Pub Date : 2026-02-24Epub Date: 2026-02-18DOI: 10.1073/pnas.2537420123
Sean J Westwood, Samuel Frederick
{"title":"Reply to Van der Stigchel et al.: Empirical evidence that AI survey contamination is real and substantial.","authors":"Sean J Westwood, Samuel Frederick","doi":"10.1073/pnas.2537420123","DOIUrl":"https://doi.org/10.1073/pnas.2537420123","url":null,"abstract":"","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"123 8","pages":"e2537420123"},"PeriodicalIF":9.1,"publicationDate":"2026-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146220841","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-24Epub Date: 2026-02-19DOI: 10.1073/pnas.2522161123
Sarah M Kang, Dian A Putrasahan, Noel G Brizuela, Helmuth Haak, Jürgen Kröger, Jochem Marotzke, Bjorn Stevens, Jin-Song von Storch
The spatial pattern of sea surface temperature (SST) change in the tropical Pacific plays a central role in shaping global climate through its influence on atmospheric circulation, rainfall, and extreme weather. Accurately simulating this pattern is critical for reliable near-term climate projections, yet persistent discrepancies between models and observations remain. While global warming is unequivocal, satellite-era observations reveal pronounced cooling in the southeastern tropical Pacific and Southern Ocean, contrary to the warming simulated by most CMIP models. These discrepancies raise concerns about the reliability of current models in projecting near-term regional climate change. Here, we present the historical simulation with the ICON coupled model at a 5 km ocean and 10 km atmosphere grid-spacing. ICON successfully reproduces the observed SST trends, including cooling in both the Southern Ocean and the southeastern tropical Pacific. Its fidelity is enabled by the direct representation of eddy heat transport across the Antarctic Circumpolar fronts and realistic stratocumulus cloud feedbacks in the subtropical southeast Pacific. These findings highlight the importance of fine spatial resolution in capturing the mechanisms of heat uptake in the eddy-rich Southern Ocean. Our results suggest a pathway for resolving long-standing biases in historical simulations and improving confidence in near-term climate projections.
{"title":"Km-scale coupled simulation and model-observation SST trend discrepancy.","authors":"Sarah M Kang, Dian A Putrasahan, Noel G Brizuela, Helmuth Haak, Jürgen Kröger, Jochem Marotzke, Bjorn Stevens, Jin-Song von Storch","doi":"10.1073/pnas.2522161123","DOIUrl":"https://doi.org/10.1073/pnas.2522161123","url":null,"abstract":"<p><p>The spatial pattern of sea surface temperature (SST) change in the tropical Pacific plays a central role in shaping global climate through its influence on atmospheric circulation, rainfall, and extreme weather. Accurately simulating this pattern is critical for reliable near-term climate projections, yet persistent discrepancies between models and observations remain. While global warming is unequivocal, satellite-era observations reveal pronounced cooling in the southeastern tropical Pacific and Southern Ocean, contrary to the warming simulated by most CMIP models. These discrepancies raise concerns about the reliability of current models in projecting near-term regional climate change. Here, we present the historical simulation with the ICON coupled model at a 5 km ocean and 10 km atmosphere grid-spacing. ICON successfully reproduces the observed SST trends, including cooling in both the Southern Ocean and the southeastern tropical Pacific. Its fidelity is enabled by the direct representation of eddy heat transport across the Antarctic Circumpolar fronts and realistic stratocumulus cloud feedbacks in the subtropical southeast Pacific. These findings highlight the importance of fine spatial resolution in capturing the mechanisms of heat uptake in the eddy-rich Southern Ocean. Our results suggest a pathway for resolving long-standing biases in historical simulations and improving confidence in near-term climate projections.</p>","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"123 8","pages":"e2522161123"},"PeriodicalIF":9.1,"publicationDate":"2026-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146228334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-24Epub Date: 2026-02-19DOI: 10.1073/pnas.2533772123
Minghao Qiu, Christopher W Callahan, Iván Higuera-Mendieta, Lisa Rennels, Bryan Parthum, Noah S Diffenbaugh, Marshall Burke
Human-induced climate change has increased wildfire risks, associated air pollution, and health damages in North America. Despite its large potential for damage, climate-induced wildfire smoke is rarely incorporated in estimates of the societal costs of climate change. We develop an integrated framework to estimate air pollution from climate-induced wildfire smoke (fine particulate matter, PM2.5) and the associated mortality damage in the United States across different trajectories of greenhouse gas emissions and global mean surface temperature. Our framework accounts for fire-vegetation feedbacks by empirically estimating the effects of past fires on future burn probability. Under 3 °C of global warming (relative to 1850-1900), we estimate that smoke exposure will lead to 64,000 deaths annually in the United States (95% CI: 33,500 to 112,300; calculated using historical population), a 60% increase above estimated annual smoke deaths during 2011-2020. Limiting global warming to 2 °C reduces smoke-related mortality by 14% (8,900 deaths per year) relative to our estimate for 3 °C. For every additional tonne of CO2 emissions in 2025, we calculate a net present value of monetized damage (i.e., a partial social cost of carbon) of $11.2 (95%CI: [Formula: see text]$1.1 to $41.6; 2020USD) due to climate-induced wildfire smoke mortality in the United States. Incorporating wildfire smoke damages into existing nonwildfire damage estimates increases the US domestic social cost of carbon by 74%, substantially increasing the expected benefits of greenhouse gas mitigation within the United States.
{"title":"Valuing wildfire smoke-related mortality benefits from climate mitigation.","authors":"Minghao Qiu, Christopher W Callahan, Iván Higuera-Mendieta, Lisa Rennels, Bryan Parthum, Noah S Diffenbaugh, Marshall Burke","doi":"10.1073/pnas.2533772123","DOIUrl":"https://doi.org/10.1073/pnas.2533772123","url":null,"abstract":"<p><p>Human-induced climate change has increased wildfire risks, associated air pollution, and health damages in North America. Despite its large potential for damage, climate-induced wildfire smoke is rarely incorporated in estimates of the societal costs of climate change. We develop an integrated framework to estimate air pollution from climate-induced wildfire smoke (fine particulate matter, PM<sub>2.5</sub>) and the associated mortality damage in the United States across different trajectories of greenhouse gas emissions and global mean surface temperature. Our framework accounts for fire-vegetation feedbacks by empirically estimating the effects of past fires on future burn probability. Under 3 °C of global warming (relative to 1850-1900), we estimate that smoke exposure will lead to 64,000 deaths annually in the United States (95% CI: 33,500 to 112,300; calculated using historical population), a 60% increase above estimated annual smoke deaths during 2011-2020. Limiting global warming to 2 °C reduces smoke-related mortality by 14% (8,900 deaths per year) relative to our estimate for 3 °C. For every additional tonne of CO<sub>2</sub> emissions in 2025, we calculate a net present value of monetized damage (i.e., a partial social cost of carbon) of $11.2 (95%CI: [Formula: see text]$1.1 to $41.6; 2020USD) due to climate-induced wildfire smoke mortality in the United States. Incorporating wildfire smoke damages into existing nonwildfire damage estimates increases the US domestic social cost of carbon by 74%, substantially increasing the expected benefits of greenhouse gas mitigation within the United States.</p>","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"123 8","pages":"e2533772123"},"PeriodicalIF":9.1,"publicationDate":"2026-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146228490","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-24Epub Date: 2026-02-18DOI: 10.1073/pnas.2600628123
Adrian F Hernandez, Betty Diamond, Julie Liao, Andrew N March, Kent E Kester
{"title":"Seeing the forest through the trees: Harmonizing infection-associated chronic illnesses research.","authors":"Adrian F Hernandez, Betty Diamond, Julie Liao, Andrew N March, Kent E Kester","doi":"10.1073/pnas.2600628123","DOIUrl":"https://doi.org/10.1073/pnas.2600628123","url":null,"abstract":"","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"123 8","pages":"e2600628123"},"PeriodicalIF":9.1,"publicationDate":"2026-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146220829","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In early breast cancer surgery (EBC), free margins significantly decrease local recurrence in breast-conserving surgery (BCS), while metastatic status of sentinel lymph node (SLN) impacts axillary management. However, intraoperative visualization of margins and metastatic SLNs (mSLNs) remains challenging. Here, we report a second-window near-infrared (NIR-II) fluorescence probe by conjugating ICG to TROP2-targeting cyclic peptide (TTP-ICG). Our results showed that TTP-ICG specifically binds to TROP2-expressing cells in vitro and identifies TROP2-positive tumors in vivo. In addition, TTP-ICG enabled efficient intraoperative evaluation of surgical margins and visualization of mSLNs at a submillimeter level in preclinical models. Additionally, we optimized the rapid incubation imaging method (RIIM) by shortening the procedure to less than 8 min, illustrating TTP-ICG's high performance in distinguishing malignant from normal tissues/fibroadenoma lesions as well as detecting metastatic lymph nodes in a cohort of 59 patients. Thus, this TROP2-targeting probe demonstrates its significance for fluorescence imaging-guided surgery with dual applicability in EBC, providing translational potential for further clinical decision-making.
{"title":"TROP2-targeted NIR-II fluorescence imaging for visualizing surgical margins and metastatic sentinel lymph nodes in breast cancers.","authors":"Kang-Liang Lou, Jing-Wen Bai, Hong-Tan Liu, Lin-Ling Lin, Cheng-Xi Li, Yi-Yang Gao, Sheng-Jie Lin, Yi-Fei Pei, Xiao-Long Wei, Yi-Xin Chen, Yi-Yin Tang, Hong-Yu Chen, Zhi-Yao Li, Rong Guo, Shi-Cong Tang, Chuan-Liu Wu, Guo-Jun Zhang","doi":"10.1073/pnas.2519420123","DOIUrl":"https://doi.org/10.1073/pnas.2519420123","url":null,"abstract":"<p><p>In early breast cancer surgery (EBC), free margins significantly decrease local recurrence in breast-conserving surgery (BCS), while metastatic status of sentinel lymph node (SLN) impacts axillary management. However, intraoperative visualization of margins and metastatic SLNs (mSLNs) remains challenging. Here, we report a second-window near-infrared (NIR-II) fluorescence probe by conjugating ICG to TROP2-targeting cyclic peptide (TTP-ICG). Our results showed that TTP-ICG specifically binds to TROP2-expressing cells in vitro and identifies TROP2-positive tumors in vivo. In addition, TTP-ICG enabled efficient intraoperative evaluation of surgical margins and visualization of mSLNs at a submillimeter level in preclinical models. Additionally, we optimized the rapid incubation imaging method (RIIM) by shortening the procedure to less than 8 min, illustrating TTP-ICG's high performance in distinguishing malignant from normal tissues/fibroadenoma lesions as well as detecting metastatic lymph nodes in a cohort of 59 patients. Thus, this TROP2-targeting probe demonstrates its significance for fluorescence imaging-guided surgery with dual applicability in EBC, providing translational potential for further clinical decision-making.</p>","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"123 8","pages":"e2519420123"},"PeriodicalIF":9.1,"publicationDate":"2026-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146228356","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The NLRP3 inflammasome is crucial for host defense against pathogen invasion and is implicated in various inflammatory disorders. The pathogenic association and the involved mechanism between the NLRP3 inflammasome and inflammatory diseases have garnered significant attention. Here, we demonstrate that Crohn’s disease–associated SNP RNF123-R854H aggravates colitis in vivo through the NLRP3-dependent pathway. Deficiency of RNF123 also aggravates dextran sodium sulfate-induced colitis, LPS (lipopolysaccharide)-induced endotoxemia, and Alum-induced peritonitis and enhances host defense against bacterial infection via the NLRP3-dependent pathway in vivo and promotes the NLRP3 inflammasome activation in cells. We establish RNF123 as a regulator for the NLRP3 inflammasome, highlighting its implication in the NLRP3 inflammasome-driven inflammatory diseases. Mechanistically, RNF123 catalyzes unanchored K63-linked ubiquitination of NEK7, thereby preventing NEK7-mediated dissociation of the inactive cage-like NLRP3 aggregates and the subsequent NLRP3 inflammasome assembly. Additionally, we prove that K63-linked polyubiquitin chains can be specifically captured by NEK7 in vitro and inhibit the NEK7-licensed NLRP3 inflammasome assembly. We propose that NEK7-captured unanchored K63-polyubiquitin chains serve as a key determinant for the NLRP3 inflammasome activation, acting as a molecular brake to limit the excessive NLRP3 inflammasome activation and preserve immune homeostasis. Our work yields mechanistic insights into the NLRP3 inflammasome regulation and its pathogenic link to inflammatory disease.
{"title":"The Crohn’s disease–related RNF123 prevents NLRP3 inflammasome assembly by catalyzing unanchored K63-linked ubiquitination on NEK7","authors":"Feng Liu, Wanxin Zhuang, Yuan Yang, Wenting Zhao, Siyuan Li, Ziyue Zhang, Yifan Liu, Bingyu Liu, Xiaopeng Qi, Wei Zhao, Lintai Da, Chengjiang Gao","doi":"10.1073/pnas.2518759123","DOIUrl":"https://doi.org/10.1073/pnas.2518759123","url":null,"abstract":"The NLRP3 inflammasome is crucial for host defense against pathogen invasion and is implicated in various inflammatory disorders. The pathogenic association and the involved mechanism between the NLRP3 inflammasome and inflammatory diseases have garnered significant attention. Here, we demonstrate that Crohn’s disease–associated SNP RNF123-R854H aggravates colitis in vivo through the NLRP3-dependent pathway. Deficiency of RNF123 also aggravates dextran sodium sulfate-induced colitis, LPS (lipopolysaccharide)-induced endotoxemia, and Alum-induced peritonitis and enhances host defense against bacterial infection via the NLRP3-dependent pathway in vivo and promotes the NLRP3 inflammasome activation in cells. We establish RNF123 as a regulator for the NLRP3 inflammasome, highlighting its implication in the NLRP3 inflammasome-driven inflammatory diseases. Mechanistically, RNF123 catalyzes unanchored K63-linked ubiquitination of NEK7, thereby preventing NEK7-mediated dissociation of the inactive cage-like NLRP3 aggregates and the subsequent NLRP3 inflammasome assembly. Additionally, we prove that K63-linked polyubiquitin chains can be specifically captured by NEK7 in vitro and inhibit the NEK7-licensed NLRP3 inflammasome assembly. We propose that NEK7-captured unanchored K63-polyubiquitin chains serve as a key determinant for the NLRP3 inflammasome activation, acting as a molecular brake to limit the excessive NLRP3 inflammasome activation and preserve immune homeostasis. Our work yields mechanistic insights into the NLRP3 inflammasome regulation and its pathogenic link to inflammatory disease.","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"107 1","pages":""},"PeriodicalIF":11.1,"publicationDate":"2026-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146231166","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Higor Sette Pereira, Jason Luddu, Govardhan Reddy Veerareddygari, Shridhar Kiran Sanghvi, Priyanshi B. Patel, Zachary E. Robinson, M. Quadir Siddiqui, Harpreet Singh, Trushar R. Patel
The human long noncoding RNA (lncRNA) RMRP , initially identified as part of the RNase MRP complex, is linked to various human diseases. However, its structural flexibility and broader cellular roles are not well understood. Here, we offer a comprehensive analysis of RMRP ’s structure in solution, its interactions with human proteins, and its mitochondrial functions. Using small-angle X-ray scattering (SAXS), we show that RMRP adopts different Mg 2+ -dependent shapes, shifting from an extended Y-shaped form to a more compact one as Mg 2+ levels increase. We identified and characterized interactions between RMRP and the DEAD-box RNA helicases DDX5 and DDX3X, with DDX5 binding strongly and exhibiting ATP-dependent helicase activity on RMRP , while DDX3X mainly acts as an expression regulator. Both helicases are crucial for the proper mitochondrial localization of RMRP , working within a complex regulatory network. Functionally, reducing RMRP levels disrupts mitochondrial stability, leading to membrane depolarization and an increase in reactive oxygen species, without affecting cell growth. Mechanistically, RMRP specifically controls nuclear-encoded mitochondrial proteins involved in cristae structure (DNAJC11) and respiratory chain function (NDUFS8). Our results position RMRP as a structurally adaptable lncRNA that collaborates with RNA helicases to preserve mitochondrial health through specific gene regulation. These insights provide perspectives on RMRP ’s biology and the molecular mechanisms underlying RMRP -related disorders, which could inform future therapies for conditions resulting from RMRP dysfunction.
{"title":"Human lncRNA RMRP interacts with DEAD-box helicases and modulates mitochondrial function","authors":"Higor Sette Pereira, Jason Luddu, Govardhan Reddy Veerareddygari, Shridhar Kiran Sanghvi, Priyanshi B. Patel, Zachary E. Robinson, M. Quadir Siddiqui, Harpreet Singh, Trushar R. Patel","doi":"10.1073/pnas.2522583123","DOIUrl":"https://doi.org/10.1073/pnas.2522583123","url":null,"abstract":"The human long noncoding RNA (lncRNA) <jats:italic toggle=\"yes\">RMRP</jats:italic> , initially identified as part of the RNase MRP complex, is linked to various human diseases. However, its structural flexibility and broader cellular roles are not well understood. Here, we offer a comprehensive analysis of <jats:italic toggle=\"yes\">RMRP</jats:italic> ’s structure in solution, its interactions with human proteins, and its mitochondrial functions. Using small-angle X-ray scattering (SAXS), we show that <jats:italic toggle=\"yes\">RMRP</jats:italic> adopts different Mg <jats:sup>2+</jats:sup> -dependent shapes, shifting from an extended Y-shaped form to a more compact one as Mg <jats:sup>2+</jats:sup> levels increase. We identified and characterized interactions between <jats:italic toggle=\"yes\">RMRP</jats:italic> and the DEAD-box RNA helicases DDX5 and DDX3X, with DDX5 binding strongly and exhibiting ATP-dependent helicase activity on <jats:italic toggle=\"yes\">RMRP</jats:italic> , while DDX3X mainly acts as an expression regulator. Both helicases are crucial for the proper mitochondrial localization of <jats:italic toggle=\"yes\">RMRP</jats:italic> , working within a complex regulatory network. Functionally, reducing <jats:italic toggle=\"yes\">RMRP</jats:italic> levels disrupts mitochondrial stability, leading to membrane depolarization and an increase in reactive oxygen species, without affecting cell growth. Mechanistically, <jats:italic toggle=\"yes\">RMRP</jats:italic> specifically controls nuclear-encoded mitochondrial proteins involved in cristae structure (DNAJC11) and respiratory chain function (NDUFS8). Our results position <jats:italic toggle=\"yes\">RMRP</jats:italic> as a structurally adaptable lncRNA that collaborates with RNA helicases to preserve mitochondrial health through specific gene regulation. These insights provide perspectives on <jats:italic toggle=\"yes\">RMRP</jats:italic> ’s biology and the molecular mechanisms underlying <jats:italic toggle=\"yes\">RMRP</jats:italic> -related disorders, which could inform future therapies for conditions resulting from <jats:italic toggle=\"yes\">RMRP</jats:italic> dysfunction.","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"10 1","pages":""},"PeriodicalIF":11.1,"publicationDate":"2026-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146231050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pengze Yan, Triet Bui, Ernesto Rojas Jimenez, Yanan Kuang, Shidong Xu, Cloud P. Paweletz, Hodaya Haimov, Menachem Sklartz, Ofir Cohen, Sandra S. McAllister, Kornelia Polyak
Aging is a major risk factor for breast cancer, yet how it shapes tumor development, molecular phenotype, and immune evasion remains incompletely understood. Deciphering how aging influences cancer evolution is critical for improving risk assessment, prevention, and treatment. Here, using a N-nitroso-N-methylurea (NMU)-induced rat mammary tumor model that recapitulates key features of human breast cancer, we integrated bulk and single-cell transcriptomics, whole-exome sequencing, and histopathological analysis to dissect age-associated differences in mammary tumorigenesis. We found that the age at NMU exposure critically influences tumor incidence, mutational burden, molecular subtype, and the tumor immune microenvironment. Tumors arising in aged rats originated from aging luminal progenitor-like cells, exhibited increased genomic instability, reduced immune cell infiltration, and impaired antigen presentation linked to loss of heterozygosity at chromosome (Chr) 20p. The age-associated epithelial and immune changes we identified were conserved in human breast cancers, where the loss of the homologous Chr 6p region correlated with reduced lymphocyte infiltration and shorter relapse-free survival. These findings reveal that aging profoundly affects tumor-initiating cell populations and promotes immune evasion through chromosomal instability-driven defects in antigen presentation. Our work provides a molecular basis for understanding disease onset and progression that may impact efficacy of immunotherapy in older breast cancer patients.
{"title":"Aging-associated differences in mammary tumor–initiating populations and immune evasion pathways in breast cancer","authors":"Pengze Yan, Triet Bui, Ernesto Rojas Jimenez, Yanan Kuang, Shidong Xu, Cloud P. Paweletz, Hodaya Haimov, Menachem Sklartz, Ofir Cohen, Sandra S. McAllister, Kornelia Polyak","doi":"10.1073/pnas.2523254123","DOIUrl":"https://doi.org/10.1073/pnas.2523254123","url":null,"abstract":"Aging is a major risk factor for breast cancer, yet how it shapes tumor development, molecular phenotype, and immune evasion remains incompletely understood. Deciphering how aging influences cancer evolution is critical for improving risk assessment, prevention, and treatment. Here, using a N-nitroso-N-methylurea (NMU)-induced rat mammary tumor model that recapitulates key features of human breast cancer, we integrated bulk and single-cell transcriptomics, whole-exome sequencing, and histopathological analysis to dissect age-associated differences in mammary tumorigenesis. We found that the age at NMU exposure critically influences tumor incidence, mutational burden, molecular subtype, and the tumor immune microenvironment. Tumors arising in aged rats originated from aging luminal progenitor-like cells, exhibited increased genomic instability, reduced immune cell infiltration, and impaired antigen presentation linked to loss of heterozygosity at chromosome (Chr) 20p. The age-associated epithelial and immune changes we identified were conserved in human breast cancers, where the loss of the homologous Chr 6p region correlated with reduced lymphocyte infiltration and shorter relapse-free survival. These findings reveal that aging profoundly affects tumor-initiating cell populations and promotes immune evasion through chromosomal instability-driven defects in antigen presentation. Our work provides a molecular basis for understanding disease onset and progression that may impact efficacy of immunotherapy in older breast cancer patients.","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"96 1","pages":""},"PeriodicalIF":11.1,"publicationDate":"2026-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146231049","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chromatin loading of the hexameric replicative helicase MCM2–7 complex requires coordinated interactions with the origin recognition complex (ORC), CDC6, and CDT1. MCM2–7 not bound to DNA forms a single hexamer (SH) with an open DNA entry gate between MCM2 and MCM5. Two MCM2–7 SHs can be loaded sequentially to form the double hexamer (DH) that encircles the DNA duplex. Activated MCM2–7 then unwinds DNA and initiates DNA replication. Our cryoelectron microscopy analyses show that a fraction of human MCM2–7 without DNA exists as DH. Unexpectedly, we find that the MCM3 winged helix domain (WHD) docks on MCM2 in both DNA-free DH and SH, creating a safety latch across the DNA entry gate to block DNA entry into the central channel. The safety latch can be opened by ORC-CDC6 binding. Perturbing this latch by structure-based or disease-related mutations of MCM3 causes replication defects and DNA damage checkpoint activation. Shortening the MCM3 linker between the helicase domain and WHD alleviates the cell cycle defects of the latch-strengthening mutation. Our findings uncover a regulated step in MCM2–7 loading with implications for human diseases.
{"title":"A Meier–Gorlin syndrome mutation impairs the loading of the MCM2–7 complex during DNA replication initiation","authors":"Yusong Liu, Mengquan Yang, Ping Lu, Haishan Gao, Maozhou He, Yitao Wang, Ao Qi, Ting Cao, Qiuqin Zhang, Shutao Qi, Yigong Shi, Hongtao Yu","doi":"10.1073/pnas.2526022123","DOIUrl":"https://doi.org/10.1073/pnas.2526022123","url":null,"abstract":"Chromatin loading of the hexameric replicative helicase MCM2–7 complex requires coordinated interactions with the origin recognition complex (ORC), CDC6, and CDT1. MCM2–7 not bound to DNA forms a single hexamer (SH) with an open DNA entry gate between MCM2 and MCM5. Two MCM2–7 SHs can be loaded sequentially to form the double hexamer (DH) that encircles the DNA duplex. Activated MCM2–7 then unwinds DNA and initiates DNA replication. Our cryoelectron microscopy analyses show that a fraction of human MCM2–7 without DNA exists as DH. Unexpectedly, we find that the MCM3 winged helix domain (WHD) docks on MCM2 in both DNA-free DH and SH, creating a safety latch across the DNA entry gate to block DNA entry into the central channel. The safety latch can be opened by ORC-CDC6 binding. Perturbing this latch by structure-based or disease-related mutations of MCM3 causes replication defects and DNA damage checkpoint activation. Shortening the MCM3 linker between the helicase domain and WHD alleviates the cell cycle defects of the latch-strengthening mutation. Our findings uncover a regulated step in MCM2–7 loading with implications for human diseases.","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"174 1","pages":""},"PeriodicalIF":11.1,"publicationDate":"2026-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146231054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In daily life, living beings encounter a continuous stream of mixed information, which has to be disentangled by the brain to form proper representations. Using computational modeling, we demonstrate that the interplay between dendritic calcium–mediated action potentials (dCaAPs) with synaptic plasticity and rewiring can enable single neurons to successfully perform this complex task. Compared to other types of dendritic spikes, dCaAPs exhibit a high triggering threshold, large, but graded spike amplitude, with lower amplitudes for stronger synaptic inputs. We show that these properties enable neurons to successfully learn to represent discrete items from a continuous input stream by facilitating the clustering of synapses with temporally correlated presynaptic activities onto the same dendritic branch. In comparison to N-methyl-D-aspartate spikes, dendrites generating dCaAPs can form representations of individual items more efficiently, independent of the temporal order of their presentation during learning—whether randomly, sequentially, as part of a random stream of simultaneously shown input items, or even as items with shared properties. Thus, our results provide further evidence about the critical role of dCaAPs for the computational capabilities of single neurons.
在日常生活中,生物会遇到连续不断的混合信息流,这些信息流必须由大脑进行分解,以形成适当的表征。通过计算模型,我们证明树突钙介导的动作电位(dCaAPs)与突触可塑性和重布线之间的相互作用可以使单个神经元成功地完成这项复杂的任务。与其他类型的树突尖峰相比,dCaAPs具有高触发阈值,大但有梯度的尖峰振幅,当突触输入较强时,其振幅较低。我们表明,这些特性使神经元能够通过促进具有时间相关突触前活动的突触聚类到同一树突分支上,成功地学习从连续输入流中表示离散项目。与n -甲基- d -天冬氨酸峰值相比,生成dcaap的树突可以更有效地形成单个项目的表示,而不依赖于它们在学习过程中呈现的时间顺序——无论是随机的,顺序的,作为同时显示输入项目的随机流的一部分,还是作为具有共享属性的项目。因此,我们的研究结果进一步证明了dcaap对单个神经元计算能力的关键作用。
{"title":"Robust input disentanglement through dendritic calcium–mediated action potentials","authors":"Sima Hashemi, Shirin Shafiee, Christian Tetzlaff","doi":"10.1073/pnas.2515371123","DOIUrl":"https://doi.org/10.1073/pnas.2515371123","url":null,"abstract":"In daily life, living beings encounter a continuous stream of mixed information, which has to be disentangled by the brain to form proper representations. Using computational modeling, we demonstrate that the interplay between dendritic calcium–mediated action potentials (dCaAPs) with synaptic plasticity and rewiring can enable single neurons to successfully perform this complex task. Compared to other types of dendritic spikes, dCaAPs exhibit a high triggering threshold, large, but graded spike amplitude, with lower amplitudes for stronger synaptic inputs. We show that these properties enable neurons to successfully learn to represent discrete items from a continuous input stream by facilitating the clustering of synapses with temporally correlated presynaptic activities onto the same dendritic branch. In comparison to N-methyl-D-aspartate spikes, dendrites generating dCaAPs can form representations of individual items more efficiently, independent of the temporal order of their presentation during learning—whether randomly, sequentially, as part of a random stream of simultaneously shown input items, or even as items with shared properties. Thus, our results provide further evidence about the critical role of dCaAPs for the computational capabilities of single neurons.","PeriodicalId":20548,"journal":{"name":"Proceedings of the National Academy of Sciences of the United States of America","volume":"49 1","pages":""},"PeriodicalIF":11.1,"publicationDate":"2026-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146231053","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}