Affinity photolabeling is a smart method to study noncovalent and transient interactions and provide a submolecular picture of the contacts between interacting partners. In this review, we will focus on the identification of peptide partners using photoaffinity labeling coupled to mass spectrometry in different contexts such as in vitro with a purified potential partner, in model systems such as model membranes, and with live cells using both targeted and nontargeted proteomics studies. Different biological partners will be described, among which glycoconjugates, oligonucleotides, peptides, proteins, and lipids, with the photoreactive label inserted either on the peptide of interest or on the potential partner. Particular attention will be paid to the observation and characterization of specific rearrangements following the photolabeling reaction, which can help characterize photoadducts and provide a better understanding of the interacting systems and environment.
{"title":"Photoaffinity labeling coupled to MS to identify peptide biological partners: Secondary reactions, for better or for worse?","authors":"Astrid Walrant, Emmanuelle Sachon","doi":"10.1002/mas.21880","DOIUrl":"10.1002/mas.21880","url":null,"abstract":"<p>Affinity photolabeling is a smart method to study noncovalent and transient interactions and provide a submolecular picture of the contacts between interacting partners. In this review, we will focus on the identification of peptide partners using photoaffinity labeling coupled to mass spectrometry in different contexts such as in vitro with a purified potential partner, in model systems such as model membranes, and with live cells using both targeted and nontargeted proteomics studies. Different biological partners will be described, among which glycoconjugates, oligonucleotides, peptides, proteins, and lipids, with the photoreactive label inserted either on the peptide of interest or on the potential partner. Particular attention will be paid to the observation and characterization of specific rearrangements following the photolabeling reaction, which can help characterize photoadducts and provide a better understanding of the interacting systems and environment.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"44 5","pages":"715-756"},"PeriodicalIF":6.6,"publicationDate":"2024-04-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mas.21880","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140584392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lung cancer is a severe disease for which better diagnostic and therapeutic approaches are urgently needed. Increasing evidence implies that aberrant protein glycosylation plays a crucial role in the pathogenesis and progression of lung cancer. Differences in glycosylation patterns have been previously observed between healthy and cancerous samples as well as between different lung cancer subtypes, which suggests untapped diagnostic potential. In addition, understanding the changes mediated by glycosylation may shed light on possible novel therapeutic targets and personalized treatment strategies for lung cancer patients. Mass spectrometry based glycomics and glycoproteomics have emerged as powerful tools for in‐depth characterization of changes in protein glycosylation, providing valuable insights into the molecular basis of lung cancer. This paper reviews the literature on the analysis of protein glycosylation in lung cancer using mass spectrometry, which is dominated by manuscripts published over the past 5 years. Studies analyzing N‐glycosylation, O‐glycosylation, and glycosaminoglycan patterns in tissue, serum, plasma, and rare biological samples of lung cancer patients are highlighted. The current knowledge on the potential utility of glycan and glycoprotein biomarkers is also discussed.
{"title":"Protein glycosylation in lung cancer from a mass spectrometry perspective","authors":"Mirjam Balbisi, Simon Sugár, Lilla Turiák","doi":"10.1002/mas.21882","DOIUrl":"https://doi.org/10.1002/mas.21882","url":null,"abstract":"Lung cancer is a severe disease for which better diagnostic and therapeutic approaches are urgently needed. Increasing evidence implies that aberrant protein glycosylation plays a crucial role in the pathogenesis and progression of lung cancer. Differences in glycosylation patterns have been previously observed between healthy and cancerous samples as well as between different lung cancer subtypes, which suggests untapped diagnostic potential. In addition, understanding the changes mediated by glycosylation may shed light on possible novel therapeutic targets and personalized treatment strategies for lung cancer patients. Mass spectrometry based glycomics and glycoproteomics have emerged as powerful tools for in‐depth characterization of changes in protein glycosylation, providing valuable insights into the molecular basis of lung cancer. This paper reviews the literature on the analysis of protein glycosylation in lung cancer using mass spectrometry, which is dominated by manuscripts published over the past 5 years. Studies analyzing <jats:italic>N</jats:italic>‐glycosylation, <jats:italic>O</jats:italic>‐glycosylation, and glycosaminoglycan patterns in tissue, serum, plasma, and rare biological samples of lung cancer patients are highlighted. The current knowledge on the potential utility of glycan and glycoprotein biomarkers is also discussed.","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"43 1","pages":""},"PeriodicalIF":6.6,"publicationDate":"2024-04-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140584383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Stanislav I. Pekov, Denis S. Bormotov, Svetlana I. Bocharova, Anatoly A. Sorokin, Maria M. Derkach, Igor A. Popov
Ambient ionization mass spectrometry was proved to be a powerful tool for oncological surgery. Still, it remains a translational technique on the way from laboratory to clinic. Brain surgery is the most sensitive to resection accuracy field since the balance between completeness of resection and minimization of nerve fiber damage determines patient outcome and quality of life. In this review, we summarize efforts made to develop various intraoperative support techniques for oncological neurosurgery and discuss difficulties arising on the way to clinical implementation of mass spectrometry-guided brain surgery.
{"title":"Mass spectrometry for neurosurgery: Intraoperative support in decision-making","authors":"Stanislav I. Pekov, Denis S. Bormotov, Svetlana I. Bocharova, Anatoly A. Sorokin, Maria M. Derkach, Igor A. Popov","doi":"10.1002/mas.21883","DOIUrl":"10.1002/mas.21883","url":null,"abstract":"<p>Ambient ionization mass spectrometry was proved to be a powerful tool for oncological surgery. Still, it remains a translational technique on the way from laboratory to clinic. Brain surgery is the most sensitive to resection accuracy field since the balance between completeness of resection and minimization of nerve fiber damage determines patient outcome and quality of life. In this review, we summarize efforts made to develop various intraoperative support techniques for oncological neurosurgery and discuss difficulties arising on the way to clinical implementation of mass spectrometry-guided brain surgery.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"44 1","pages":"62-73"},"PeriodicalIF":6.6,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140584061","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Young mass spectrometrists special issue","authors":"","doi":"10.1002/mas.21884","DOIUrl":"10.1002/mas.21884","url":null,"abstract":"","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"43 4","pages":""},"PeriodicalIF":6.6,"publicationDate":"2024-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140583900","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Zwitterionic ring-expansion polymerization (ZREP) is a polymerization method in which a cyclic monomer is converted into a cyclic polymer through a zwitterionic intermediate. In this review, we explored the ZREP of various cyclic polymers and how mass spectrometry assists in identifying the product architectures and understanding their intricate reaction mechanism. For the majority of polymers (from a few thousand to a few million Da) matrix-assisted laser desorption/ionization time-of-flight mass spectrometry is the most effective mass spectrometry technique to determine the true molecular weight (MW) of the resultant product, but only when the dispersity is low (approximately below 1.2). The key topics covered in this study were the ZREP of cyclic polyesters, cyclic polyamides, and cyclic ethers. In addition, this study also addresses a number of other preliminary topics, including the ZREP of cyclic polycarbonates, cyclic polysiloxanes, and cyclic poly(alkylene phosphates). The purity and efficiency of those syntheses largely depend on the catalyst. Among several catalysts, N-heterocyclic carbenes have exhibited high efficiency in the synthesis of cyclic polyesters and polyamides, whereas tris(pentafluorophenyl)borane [B(C6F5)3] is the most optimal catalyst for cyclic polyether synthesis.
{"title":"Understanding zwitterionic ring-expansion polymerization through mass spectrometry","authors":"Mahi Ahmad, Scott M. Grayson","doi":"10.1002/mas.21877","DOIUrl":"10.1002/mas.21877","url":null,"abstract":"<p>Zwitterionic ring-expansion polymerization (ZREP) is a polymerization method in which a cyclic monomer is converted into a cyclic polymer through a zwitterionic intermediate. In this review, we explored the ZREP of various cyclic polymers and how mass spectrometry assists in identifying the product architectures and understanding their intricate reaction mechanism. For the majority of polymers (from a few thousand to a few million Da) matrix-assisted laser desorption/ionization time-of-flight mass spectrometry is the most effective mass spectrometry technique to determine the true molecular weight (MW) of the resultant product, but only when the dispersity is low (approximately below 1.2). The key topics covered in this study were the ZREP of cyclic polyesters, cyclic polyamides, and cyclic ethers. In addition, this study also addresses a number of other preliminary topics, including the ZREP of cyclic polycarbonates, cyclic polysiloxanes, and cyclic poly(alkylene phosphates). The purity and efficiency of those syntheses largely depend on the catalyst. Among several catalysts, <i>N</i>-heterocyclic carbenes have exhibited high efficiency in the synthesis of cyclic polyesters and polyamides, whereas tris(pentafluorophenyl)borane [B(C<sub>6</sub>F<sub>5</sub>)<sub>3</sub>] is the most optimal catalyst for cyclic polyether synthesis.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"44 6","pages":"918-946"},"PeriodicalIF":6.6,"publicationDate":"2024-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/epdf/10.1002/mas.21877","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140331346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"My journey in life and chemistry","authors":"Veronica M. Bierbaum","doi":"10.1002/mas.21879","DOIUrl":"10.1002/mas.21879","url":null,"abstract":"","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"44 2","pages":"93-100"},"PeriodicalIF":6.6,"publicationDate":"2024-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140292304","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Special issue of Dr. Veronica Bierbaum for her contributions to fundamental chemistry in mass spectrometry","authors":"","doi":"10.1002/mas.21878","DOIUrl":"10.1002/mas.21878","url":null,"abstract":"","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"44 2","pages":"91-92"},"PeriodicalIF":6.6,"publicationDate":"2024-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140178766","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
McKenna J. Redding, Scott M. Grayson, Laurence Charles
Mass spectrometry (MS) has become an essential technique to characterize dendrimers as it proved efficient at tackling analytical challenges raised by their peculiar onion-like structure. Owing to their chemical diversity, this review covers benefits of MS methods as a function of dendrimer classes, discussing advantages and limitations of ionization techniques, tandem mass spectrometry (MS/MS) strategies to determine the structure of defective species, as well as most recently demonstrated capabilities of ion mobility spectrometry (IMS) in the field. Complementarily, the well-defined structure of these macromolecules offers major advantages in the development of MS-based method, as reported in a second section reviewing uses of dendrimers as MS and IMS calibration standards and as multifunctional charge inversion reagents in gas phase ion/ion reactions.
质谱法（MS）已成为表征树枝状聚合物的重要技术，因为事实证明它能有效地解决树枝状聚合物独特的洋葱状结构所带来的分析难题。由于树枝状聚合物的化学性质多种多样，本综述将根据树枝状聚合物的类别介绍质谱方法的优势，讨论电离技术的优势和局限性、确定缺陷物种结构的串联质谱（MS/MS）策略以及离子迁移谱（IMS）在该领域的最新功能。作为补充，这些大分子的明确结构为开发基于 MS 的方法提供了重大优势，第二部分回顾了树枝状聚合物作为 MS 和 IMS 校准标准以及气相离子/离子反应中多功能电荷反转试剂的用途。
{"title":"Mass spectrometry of dendrimers","authors":"McKenna J. Redding, Scott M. Grayson, Laurence Charles","doi":"10.1002/mas.21876","DOIUrl":"10.1002/mas.21876","url":null,"abstract":"<p>Mass spectrometry (MS) has become an essential technique to characterize dendrimers as it proved efficient at tackling analytical challenges raised by their peculiar onion-like structure. Owing to their chemical diversity, this review covers benefits of MS methods as a function of dendrimer classes, discussing advantages and limitations of ionization techniques, tandem mass spectrometry (MS/MS) strategies to determine the structure of defective species, as well as most recently demonstrated capabilities of ion mobility spectrometry (IMS) in the field. Complementarily, the well-defined structure of these macromolecules offers major advantages in the development of MS-based method, as reported in a second section reviewing uses of dendrimers as MS and IMS calibration standards and as multifunctional charge inversion reagents in gas phase ion/ion reactions.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"44 5","pages":"682-714"},"PeriodicalIF":6.6,"publicationDate":"2024-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mas.21876","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140172255","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Celebrating the remarkable career of Prof. Catherine Fenselau","authors":"Daniele Fabris","doi":"10.1002/mas.21875","DOIUrl":"10.1002/mas.21875","url":null,"abstract":"","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"43 4","pages":"723-724"},"PeriodicalIF":6.6,"publicationDate":"2024-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140058258","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
<p>Chatterjee, S. and Zaia, J., 2022. Proteomics-based mass spectrometry profiling of SARS-CoV-2 infection from human nasopharyngeal samples. <i>Mass Spectrometry Reviews</i>, <i>43</i>(1):193–229. [DOI: 10.1002/mas.21813]</p><p>1. Page 2 – In the sentence “…as a disease with ambiguous etiology (Y. Huang et al., 2020)” the correct in-text citation should be “C. Huang et al., 2019” [Huang C, Wang Y, Li X, et al. 2020. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. <i>Lancet</i> (London, England) 395(10223):497–506.]</p><p>2. Page 3 – “, blood (Li, Liu, et al., 2021;” the correct in-text citation should be “L. Li et al., 2021” [Li, L., et al., Analysis of viral load in different specimen types and serum antibody levels of COVID-19 patients. <i>Journal of Translational Medicine</i>, 2021. <b>19</b>(1):30]</p><p>3. Page 3 – “, feces (Li, Liu, et al., 2021; Wang, Xu, et al., 2020)–the in-text citation Wang, Xu, et al., 2020 is changed to “W. Wang et al., 2020” to avoid confusion with another similar in-text citation [Wang W, Xu Y, Gao R, et al. 2020. Detection of SARS-CoV-2 in different types of clinical specimens. <i>Jama</i> 323(18):1843–1844.]</p><p>4. Page 3 – “…glycan shield mechanisms (Bagdonaite & Wandall, 2018; Li, Liu, et al., 2021;” the in-text citation Li, Liu, et al., 2021 should be “L. Li et al., 2021” [Li, L., et al., Analysis of viral load in different specimen types and serum antibody levels of COVID-19 patients. <i>Journal of Translational Medicine</i>, 2021. <b>19</b>(1):30]</p><p>5. Page 17 – “…SARS-CoV-2 interaction with the host cell receptor (Yang, Hughes, et al., 2020)”, the correct citation is “Yang Y, Du Y, Kaltashov IA. 2020. The utility of native MS for understanding the mechanism of action of repurposed therapeutics in COVID-19: heparin as a disruptor of the SARS-CoV-2 interaction with its host cell receptor. <i>Analytical Chemistry</i> 92(16):10930–10934.”</p><p>6. Page 18 – “…of the S-protein (Gstottner et al., 2021; Watanabe, Berndsen, et al., 2020; Yang, Hughes, et al., 2020)” – the citation Yang, Hughes, et al., 2020 should be Yang J, Wang W, Chen Z, et al. 2020. A vaccine targeting the RBD of the S protein of SARS-CoV-2 induces protective immunity. <i>Nature</i> 586(7830):572–577.</p><p>7. Page 18 – “…that allows the first viral entry into the host cells (Gong et al., 2021; Shajahan, Archer-Hartmann, et al., 2021)”—the citation Shajahan, Archer-Hartmann, et al., 2021 should be Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021. Glycosylation of SARS-CoV-2: structural and functional insights. <i>Analytical and Bioanalytical Chemistry</i> 413(29):7179-7193.</p><p>8. Page 20 – “…reported by Group-based Prediction System 5.0; Wang, Xu, et al., 2020).” The citation should be Wang C, Xu H, Lin S, et al. 2020. GPS 5.0: an update on the prediction of kinase-specific phosphorylation sites in proteins. <i>Genomics, Proteomics & Bioinformatics</i> 18(1):72–80.</p><p>9. Page 20 –
查特吉，S.和扎亚，J., 2022。基于蛋白质组学的人鼻咽样本SARS-CoV-2感染的质谱分析质谱分析，43(1):193-229。(DOI: 10.1002 / mas.21813) 1。第2页-在“…as a disease with ambiguous etiology （Y. Huang et al., 2020）”这句话中，正确的引文应该是“C。黄超，王勇，李鑫，等。2020. [j]。武汉市新型冠状病毒感染患者临床特征分析[2]《柳叶刀》（英国，伦敦）395(10223):497-506。第3页-“，blood （Li, Liu, et ., 2021;）”，正确的文内引文应为“L。李磊，等。2021”[j] .新型冠状病毒病不同标本类型病毒载量及血清抗体水平分析。转化医学杂志，2021。19(1): 30) 3。第3页-“粪便”(Li， Liu等，2021；Wang, Xu, et al., 2020)——文中引用Wang， Xu, et al.， 2020改为“W。Wang et al., 2020”，以避免与另一个类似的文本引用混淆[王伟，徐勇，高锐，等。2020.]不同类型临床标本中SARS-CoV-2的检测。《美国医学会杂志》323年(18):1843 - 1844。4。第3页-“…聚糖屏蔽机制(Bagdonaite &；Wandall, 2018;Li, Liu, et al., 2021；”文本引文Li， Liu, et al.， 2021应该是“L。李磊，等。2021”[j] .新型冠状病毒病不同标本类型病毒载量及血清抗体水平分析。转化医学杂志，2021。19(1): 30) 5。第17页-“…SARS-CoV-2与宿主细胞受体的相互作用（Yang, Hughes, et al., 2020）”，正确的引文是“Yang Y, Du Y, Kaltashov IA。2020. 天然质谱对理解COVID-19重新用途疗法的作用机制的效用：肝素作为SARS-CoV-2与其宿主细胞受体相互作用的干扰物。分析化学92(16):10930-10934。第18页-“s蛋白的…”(Gstottner et al., 2021；Watanabe， Berndsen等，2020；Yang, Hughes, et al., 2020)——引用Yang， Hughes, et al.， 2020应该是杨健，王伟，陈忠等。2020。一种针对SARS-CoV-2 S蛋白RBD的疫苗可诱导保护性免疫。自然586(7830):572 - 577.7。第18页-“…允许第一个病毒进入宿主细胞(Gong et al., 2021；-引用Shajahan， Archer-Hartmann等，2021应该是Shajahan A， Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021。SARS-CoV-2的糖基化：结构和功能的见解。生物化学学报，30(3):379 - 379。第20页-“…由基于组的预测系统5.0报告；Wang， Xu等，2020)。引语应为王超，徐华，林生等。2020。GPS 5.0：蛋白质中激酶特异性磷酸化位点预测的最新进展。基因组学、蛋白质组学生物信息学18(1):72 - 80.9。第20页-“病毒和宿主细胞膜的…”(Hoffmann et al., 2020；Shajahan， Archer-Hartmann等，2021)- Shajahan引文应该是Shajahan A， Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021。SARS-CoV-2的糖基化：结构和功能的见解。分析与生物分析化学[j] .北京：北京大学学报（自然科学版）。第20页-“…治疗发展（Du et al., 2009；…Yang, Hughes, et al., 2020；…）”Yang， Hughes引文应为杨健，王伟，陈忠等。2020。一种针对SARS-CoV-2 S蛋白RBD的疫苗可诱导保护性免疫。自然586(7830):572 - 577.11。第21页（两个实例）和第25页（两个实例）-“Shajahan, Archer-Hartmann, et, 2021”引文应为Shajahan A， Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021。SARS-CoV-2的糖基化：结构和功能的见解。生物化学学报，30(3):379 - 379。第24页（2个实例）和第25页（1个实例）-“Watanabe, Berndsen, et al.（2020）”引文应为Watanabe Y， Allen JD, Wrapp D, McLellan JS, Crispin M. 2020。SARS-CoV-2刺突的位点特异性聚糖分析。科学（纽约，NY） 369(6501): 330-333.13。第25页——“……降低病毒的传染性（Wang, Xu, et al., 2020）”——引文应该是Wang， L., Wang，和H. Zhuang， SARS-CoV-2突变体的传染性和抗原性的分析和表征。信号转导和靶向治疗2020。5(1): 1 - 2.14。第26页（两个例子）-“(H。C. Huang et al., 2021)”——引文应为黄健，王迪，Shipman RD，朱忠，刘勇，李磊。双功能化Ti-IMAC材料可同时富集和分离SARS-CoV-2刺突蛋白中性和唾液糖肽。分析与生物分析化学，13(29):7295-7303.15。第26页-“在另一项研究中，W. Wang, Xu et al.（2020）分析…”引文应该是Wang D， Baudys J, Bundy JL, Solano M, Keppel T, Barr JR. 2020。利用特征离子触发电子转移/高能碰撞解离（EThcD）质谱法对SARS-CoV-2刺突蛋白聚糖补体进行综合分析。 分析化学，21(2):1473 - 14739。夏嘉汉，阿杰-哈特曼S， Supekar NT, Gleinich AS, Heiss C, Azadi P.[21]。SARS-CoV-2人受体血管紧张素转换酶2 N-和o -糖基化的综合表征糖生物学31(4):410-424”在手稿中没有使用。正确的参考文献和相应的正文参考文献应为“Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021。SARS-CoV-2的糖基化：结构和功能的见解。分析与生物分析化学[j] .化学工程学报，2012,30(4):379 - 379。参考文献第35页Varki A， Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH，编辑。糖生物学要点[互联网]。第3版。冷泉港（纽约）：冷泉港实验室出版社；2015
{"title":"Erratum to “Proteomics-based mass spectrometry profiling of SARS-CoV-2 infection from human nasopharyngeal samples”","authors":"","doi":"10.1002/mas.21874","DOIUrl":"10.1002/mas.21874","url":null,"abstract":"<p>Chatterjee, S. and Zaia, J., 2022. Proteomics-based mass spectrometry profiling of SARS-CoV-2 infection from human nasopharyngeal samples. <i>Mass Spectrometry Reviews</i>, <i>43</i>(1):193–229. [DOI: 10.1002/mas.21813]</p><p>1. Page 2 – In the sentence “…as a disease with ambiguous etiology (Y. Huang et al., 2020)” the correct in-text citation should be “C. Huang et al., 2019” [Huang C, Wang Y, Li X, et al. 2020. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. <i>Lancet</i> (London, England) 395(10223):497–506.]</p><p>2. Page 3 – “, blood (Li, Liu, et al., 2021;” the correct in-text citation should be “L. Li et al., 2021” [Li, L., et al., Analysis of viral load in different specimen types and serum antibody levels of COVID-19 patients. <i>Journal of Translational Medicine</i>, 2021. <b>19</b>(1):30]</p><p>3. Page 3 – “, feces (Li, Liu, et al., 2021; Wang, Xu, et al., 2020)–the in-text citation Wang, Xu, et al., 2020 is changed to “W. Wang et al., 2020” to avoid confusion with another similar in-text citation [Wang W, Xu Y, Gao R, et al. 2020. Detection of SARS-CoV-2 in different types of clinical specimens. <i>Jama</i> 323(18):1843–1844.]</p><p>4. Page 3 – “…glycan shield mechanisms (Bagdonaite & Wandall, 2018; Li, Liu, et al., 2021;” the in-text citation Li, Liu, et al., 2021 should be “L. Li et al., 2021” [Li, L., et al., Analysis of viral load in different specimen types and serum antibody levels of COVID-19 patients. <i>Journal of Translational Medicine</i>, 2021. <b>19</b>(1):30]</p><p>5. Page 17 – “…SARS-CoV-2 interaction with the host cell receptor (Yang, Hughes, et al., 2020)”, the correct citation is “Yang Y, Du Y, Kaltashov IA. 2020. The utility of native MS for understanding the mechanism of action of repurposed therapeutics in COVID-19: heparin as a disruptor of the SARS-CoV-2 interaction with its host cell receptor. <i>Analytical Chemistry</i> 92(16):10930–10934.”</p><p>6. Page 18 – “…of the S-protein (Gstottner et al., 2021; Watanabe, Berndsen, et al., 2020; Yang, Hughes, et al., 2020)” – the citation Yang, Hughes, et al., 2020 should be Yang J, Wang W, Chen Z, et al. 2020. A vaccine targeting the RBD of the S protein of SARS-CoV-2 induces protective immunity. <i>Nature</i> 586(7830):572–577.</p><p>7. Page 18 – “…that allows the first viral entry into the host cells (Gong et al., 2021; Shajahan, Archer-Hartmann, et al., 2021)”—the citation Shajahan, Archer-Hartmann, et al., 2021 should be Shajahan A, Pepi LE, Rouhani DS, Heiss C, Azadi P. 2021. Glycosylation of SARS-CoV-2: structural and functional insights. <i>Analytical and Bioanalytical Chemistry</i> 413(29):7179-7193.</p><p>8. Page 20 – “…reported by Group-based Prediction System 5.0; Wang, Xu, et al., 2020).” The citation should be Wang C, Xu H, Lin S, et al. 2020. GPS 5.0: an update on the prediction of kinase-specific phosphorylation sites in proteins. <i>Genomics, Proteomics & Bioinformatics</i> 18(1):72–80.</p><p>9. Page 20 – ","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"44 3","pages":"539-540"},"PeriodicalIF":6.6,"publicationDate":"2024-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mas.21874","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139929179","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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