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Complex systems in ecology: a guided tour with large Lotka–Volterra models and random matrices 生态学中的复杂系统:大型 Lotka-Volterra 模型和随机矩阵导览
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-03-06 DOI: 10.1098/rspa.2023.0284
Imane Akjouj, Matthieu Barbier, Maxime Clenet, Walid Hachem, Mylène Maïda, François Massol, Jamal Najim, Viet Chi Tran

Ecosystems represent archetypal complex dynamical systems, often modelled by coupled differential equations of the formdxidt=xiϕi(x1,,xN),where N represents the number of species and xi, the abundance of species i. Among these families of coupled differential equations, Lotka–Volterra (LV) equations, corresponding toϕi(x1,,xN)=rixi+(Γx)i,play a privileged role, as the LV model represents an acceptable trade-off between complexity and tractability. Here, ri is the intrinsic growth of species i and Γ stands for the interaction matrix: Γij represents the effect of species j over species i. For large N, estimating matrix Γ is often an overwhelming task and an alternative is to draw Γ at random, parameterizing its statistical distribution by a limited number of model features. Dealing with large random matrices, we naturally rely on random matrix theory (RMT). The aim of this review article is to present an overview of the work at the junction of theoretical ecology and large RMT. It is intended to an interdisciplinary audience spanning theoretical ecology, complex systems, statistical physics and mathematical biology.

生态系统是典型的复杂动力系统,通常由形式为dxidt=xiji(x1,...,xN)的耦合微分方程模拟,其中 N 代表物种数量,xi 代表物种 i 的丰度。在这些耦合微分方程族中,Lotka-Volterra(LV)方程(对应于 ji(x1,...,xN)=ri-xi+(Γx)i)发挥着重要作用,因为 LV 模型在复杂性和可操作性之间进行了可接受的权衡。这里,ri 是物种 i 的内在增长,Γ 代表相互作用矩阵:Γij表示物种 j 对物种 i 的影响。对于大 N,估计矩阵Γ往往是一项艰巨的任务,另一种方法是随机绘制Γ,通过有限的模型特征参数化其统计分布。处理大型随机矩阵时,我们自然要依赖随机矩阵理论(RMT)。这篇综述文章旨在概述理论生态学与大型随机矩阵理论交界处的工作。文章面向跨学科读者,涵盖理论生态学、复杂系统、统计物理学和数学生物学。
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引用次数: 0
Connecting continuum poroelasticity with discrete synthetic vascular trees for modelling liver tissue 连接连续气孔弹性与离散合成血管树以模拟肝脏组织
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-03-06 DOI: 10.1098/rspa.2023.0421
Adnan Ebrahem, Etienne Jessen, Marco F. P. ten Eikelder, Tarun Gangwar, Michał Mika, Dominik Schillinger

The modelling of liver tissue across multiple length scales constitutes a significant challenge, primarily due to the multiphysics coupling of mechanical response and perfusion within the complex multiscale vascularization of the organ. In this paper, we present a modelling framework that connects continuum poroelasticity and discrete vascular tree structures to model liver tissue across disparate levels of the perfusion hierarchy. The connection is achieved through a series of modelling decisions, which include source terms in the pressure equation to model inflow from the supplying tree, pressure boundary conditions to model outflow into the draining tree, and contact conditions to model surrounding tissue. We investigate the numerical behaviour of our framework and apply it to a patient-specific full-scale liver problem that demonstrates its potential to help assess surgical liver resection procedures.

对肝脏组织进行多长度尺度建模是一项重大挑战,这主要是由于在器官复杂的多尺度血管中,机械响应和灌注存在多物理耦合。在本文中,我们提出了一个建模框架,该框架将连续气孔弹性和离散血管树结构连接起来,为肝脏组织建立了一个跨越不同灌注层次的模型。这种连接是通过一系列建模决策实现的,其中包括压力方程中的源项,以模拟来自供应树的流入;压力边界条件,以模拟流入排水树的流出;以及接触条件,以模拟周围组织。我们对框架的数值行为进行了研究,并将其应用于针对特定患者的全尺寸肝脏问题,以展示其帮助评估外科肝脏切除手术的潜力。
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引用次数: 0
Multichannel scattering for the Schrödinger equation on a line with different thresholds at both infinities 线性上薛定谔方程的多通道散射,两个无限点的阈值不同
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-03-06 DOI: 10.1098/rspa.2023.0847
Peter O. Kazinski, Petr S. Korolev

The multichannel scattering problem for the stationary Schrödinger equation on a line with different thresholds at both infinities is investigated. The analytical structure of the Jost solutions and of the transition matrix relating the Jost solutions as functions of the spectral parameter is described. Unitarity of the scattering matrix is proved in the general case when some of the scattering channels can be closed and the thresholds can be different at left and right infinities on the line. The symmetry relations of the S-matrix are established. The condition determining the bound states is obtained. The asymptotics of the Jost functions and of the transition matrix are derived for a large spectral parameter.

研究了直线上静止薛定谔方程的多通道散射问题,该方程在两个无限点上具有不同的阈值。描述了约斯特解的分析结构以及与约斯特解相关的过渡矩阵作为谱参数函数的分析结构。在某些散射通道可能是封闭的,且线上左右无穷远处的阈值可能不同的一般情况下,证明了散射矩阵的单一性。建立了 S 矩阵的对称关系。得到了决定束缚态的条件。推导了大谱参数下乔斯特函数和过渡矩阵的渐近线。
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引用次数: 0
Axisymmetric vibration and stability of dielectric-elastic tubular bilayer system 介电弹性管状双层体系的轴对称振动与稳定性
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-03-06 DOI: 10.1098/rspa.2023.0727
Ahmad Almamo, Yipin Su, Weiqiu Chen, Huiming Wang

Modern transducers and actuators may have functional layers with multi-field coupling and some elastic layers. This paper considers a tubular bilayer system consisting of a thin dielectric tube coated with a thick elastic layer. We study the nonlinear electromechanical response and the linear axisymmetric vibration of the system subject to different applied voltages and inner/outer pressures within the framework of the general nonlinear theory of electro-elasticity, the related linear incremental theory, and by considering the continuity conditions at the interface. We investigate instability behaviour using the same basic formulae. The state-space method provides efficient and accurate free vibration analysis, considering the dynamic response at the lowest frequencies, so we can neglect the viscous and damping effects, which is well suited to this problem. New results indicate that the bilayer system improves its frequency capability and stability compared to the monolayer dielectric tube. The thick outer elastic layer stiffens the bilayer system against axisymmetric bifurcation, bulging and necking instabilities. It also performs better in front of axisymmetric instability, increasing the system’s capability to receive or produce higher voltages, especially for long waves.This work thoroughly explains bilayer functional systems’ behaviour when exposed to extreme environments such as high voltage or pressure.

现代传感器和致动器可能具有多场耦合功能层和一些弹性层。本文研究了一个管状双层系统,该系统由一个薄介质管和一个厚弹性层组成。我们在电弹性一般非线性理论和相关线性增量理论的框架内,通过考虑界面的连续性条件,研究了系统在不同外加电压和内外压力作用下的非线性机电响应和线性轴对称振动。我们使用相同的基本公式研究不稳定性行为。状态空间法提供了高效准确的自由振动分析,考虑了最低频率的动态响应,因此我们可以忽略粘性和阻尼效应,这非常适合这个问题。新结果表明,与单层介质管相比,双层系统提高了频率能力和稳定性。厚的外弹性层增强了双层系统的刚度,使其能够抵御轴对称分岔、鼓胀和缩颈等不稳定性。这项研究彻底解释了双层功能系统在暴露于高电压或高压等极端环境时的行为。
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引用次数: 0
Generating new gravitational solutions by matrix multiplication 通过矩阵乘法生成新的引力解
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-03-06 DOI: 10.1098/rspa.2023.0857
M. Cristina Câmara, Gabriel Lopes Cardoso

Explicit solutions to the nonlinear field equations of some gravitational theories can be obtained, by means of a Riemann–Hilbert approach, from a canonical Wiener–Hopf factorization of certain matrix functions called monodromy matrices. In this paper, we describe other types of factorization from which solutions can be constructed in a similar way. Our approach is based on an invariance problem, which does not constitute a Riemann–Hilbert problem and allows to construct solutions that could not have been obtained by Wiener–Hopf factorization of a monodromy matrix. It gives rise to a novel solution generating method based on matrix multiplications. We show, in particular, that new solutions can be obtained by multiplicative deformation of the canonical Wiener–Hopf factorization, provided the latter exists, and that one can superpose such solutions. Examples of applications include Kasner, Einstein–Rosen wave and gravitational pulse wave solutions.

某些引力理论的非线性场方程的显式解可以通过黎曼-希尔伯特(Riemann-Hilbert)方法,从称为单色矩阵(monodromy matrices)的某些矩阵函数的典型维纳-霍普夫(Wiener-Hopf)因式分解中获得。在本文中,我们将介绍其他类型的因式分解,从中可以用类似的方法构建解。我们的方法基于一个不变量问题,它并不构成黎曼-希尔伯特(Riemann-Hilbert)问题,而且可以构建单色矩阵的 Wiener-Hopf 因式分解无法获得的解。它催生了一种基于矩阵乘法的新型解生成方法。我们特别指出,只要存在典型的维纳-霍普夫因式分解,就可以通过乘法变形得到新的解,而且可以叠加这些解。应用实例包括卡斯纳波、爱因斯坦-罗森波和引力脉冲波的求解。
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引用次数: 0
Asymptotic numerical method for hyperelasticity and elastoplasticity: a review 超弹性和弹塑性的渐近数值方法:综述
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-03-06 DOI: 10.1098/rspa.2023.0714
Michel Potier-Ferry

The literature about the asymptotic numerical method (ANM) is reviewed in this paper as well as its application to hyperelasticity and elastoplasticity. ANM is a generic continuation method based on the computation of Taylor series for solving nonlinear partial differential equations. Modern techniques of high-order differentiation provide simple tools for computing these power series, the corresponding algorithms for finite strain elasticity and elastoplasticity being summarized here. Taylor series is not only a computation tool, but it contains also useful information about the structure of the considered solution curve. The paper ends with a short historical account about the development of this numerical method.

本文综述了有关渐近数值法(ANM)的文献及其在超弹性和弹塑性中的应用。渐近数值法是一种基于泰勒级数计算的通用延续方法,用于求解非线性偏微分方程。现代的高阶微分技术为计算这些幂级数提供了简单的工具,本文总结了有限应变弹性和弹塑性的相应算法。泰勒级数不仅是一种计算工具,还包含有关所考虑的解曲线结构的有用信息。本文最后简要介绍了这种数值方法的发展历史。
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引用次数: 0
Unstable cores are the source of instability in chemical reaction networks 不稳定的核心是化学反应网络不稳定的根源
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-03-06 DOI: 10.1098/rspa.2023.0694
Nicola Vassena, Peter F. Stadler

In biochemical networks, complex dynamical features such as superlinear growth and oscillations are classically considered a consequence of autocatalysis. For the large class of parameter-rich kinetic models, which includes generalized mass action kinetics and Michaelis–Menten kinetics, we show that certain submatrices of the stoichiometric matrix, so-called unstable cores, are sufficient for a reaction network to admit instability and potentially give rise to such complex dynamical behaviour. The determinant of the submatrix distinguishes unstable-positive feedbacks, with a single real-positive eigenvalue, and unstable-negative feedbacks without real-positive eigenvalues. Autocatalytic cores turn out to be exactly the unstable-positive feedbacks that are Metzler matrices. Thus there are sources of dynamical instability in chemical networks that are unrelated to autocatalysis. We use such intuition to design non-autocatalytic biochemical networks with superlinear growth and oscillations.

在生化网络中,超线性增长和振荡等复杂动力学特征通常被认为是自催化作用的结果。对于包括广义质量作用动力学和迈克尔-门顿动力学在内的一大类参数丰富的动力学模型,我们表明,化学计量矩阵的某些子矩阵,即所谓的不稳定核心,足以使反应网络具有不稳定性,并有可能产生这种复杂的动力学行为。子矩阵的行列式区分了具有单一实正特征值的不稳定正反馈和不具有实正特征值的不稳定负反馈。自催化核心正是梅兹勒矩阵的不稳定正反馈。因此,化学网络中存在与自催化无关的动态不稳定源。我们利用这种直觉来设计具有超线性增长和振荡的非自动催化生化网络。
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引用次数: 0
A theory of stochastic fluvial landscape evolution 随机河流地貌演变理论
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-02-07 DOI: 10.1098/rspa.2023.0456
G. G. Roberts, O. Wani
Geometries of eroding landscapes contain important information about geologic, climatic, biotic and geomorphic processes. They are also characterized by variability, which makes disentangling their origins challenging. Observations and physical models of fluvial processes, which set the pace of erosion on most continents, emphasize complexity and variability. By contrast, the spectral content of longitudinal river profiles and similarity of geometries at scales greater than approximately 100 km highlight relatively simple emergent properties. A general challenge then, addressed in this manuscript, is development of a theory of landscape evolution that embraces such scale-dependent insights. We do so by incorporating randomness and probability into a theory of fluvial erosion. First, we explore the use of stochastic differential equations of the Langevin type, and the Fokker–Planck equation, for predicting migration of erosional fronts. Second, analytical approaches incorporating distributions of driving forces, critical thresholds and associated proxies are developed. Finally, a linear programming approach is introduced, that, at its core, treats evolution of longitudinal profiles as a Markovian stochastic problem. The theory is developed essentially from first principles and incorporates physics governing fluvial erosion. We explore predictions of this theory, including the natural growth of discontinuities and scale-dependent evolution, including local complexity and emergent simplicity.
侵蚀地貌的几何形状包含有关地质、气候、生物和地貌过程的重要信息。侵蚀地貌还具有多变性的特点,这就给厘清侵蚀地貌的起源带来了挑战。大多数大陆的侵蚀过程都是由河川过程决定的,对河川过程的观测和物理模型都强调其复杂性和多变性。相比之下,河流纵向剖面的频谱内容和大于约 100 公里尺度的几何形状的相似性则突出了相对简单的新兴特性。因此,本手稿所要解决的一个普遍挑战,就是发展一种景观演化理论,将这些与尺度相关的见解纳入其中。为此,我们将随机性和概率纳入了河流侵蚀理论。首先,我们探讨了如何利用朗格文随机微分方程和福克-普朗克方程来预测侵蚀前沿的迁移。其次,我们开发了包含驱动力分布、临界阈值和相关代用指标的分析方法。最后,介绍了一种线性规划方法,其核心是将纵向剖面的演变视为马尔可夫随机问题。该理论基本上是从第一性原理出发,并结合了控制河川侵蚀的物理学原理。我们探讨了这一理论的预测结果,包括不连续性的自然增长和规模依赖性演变,包括局部复杂性和出现的简单性。
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引用次数: 0
Nonlinear acoustics of an aperture under grazing flow 放牧流下孔隙的非线性声学特性
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-02-07 DOI: 10.1098/rspa.2023.0718
Alexander K. Stoychev, Tiemo Pedergnana, Nicolas Noiray
This work presents a mathematical model of a dynamically forced, acoustically compact aperture subject to one-sided mean grazing flow in two or three dimensions. By contrast to other simplified theoretical representations of a grazed aperture, the one proposed in this contribution considers some of the nonlinear effects a reduced order model should naturally inherit from the conservation equations governing the primary system’s dynamics. Furthermore, unlike other nonlinear developments, this one is able to reproduce the acoustic forcing amplitude dependence of the fundamental-frequency-based impedance, measured in recent experiments, without relying on empirical parameters. This nonlinear model offers further insight into the dominant physical mechanisms determining the aforementioned behaviour and allows reasonable a priori estimates of the aeroacoustic dynamics of the aperture. This could be used as a building block of more sophisticated systems or for the derivation of even simpler representations suitable for acoustic network modelling.
这项研究提出了一个在二维或三维空间中受到单侧平均掠流作用的动态受迫声学紧凑孔径的数学模型。与其他放牧光圈的简化理论表述相比,本论文提出的模型考虑了一些非线性效应,这些效应是一个低阶模型应自然地从支配主系统动力学的守恒方程中继承的。此外,与其他非线性模型不同的是,该模型能够再现基频阻抗的声学强迫振幅依赖性,而不依赖于最近的实验所测得的经验参数。这一非线性模型有助于进一步了解决定上述行为的主要物理机制,并可对孔径的气声动力学进行合理的先验估计。它可以作为更复杂系统的构件,或用于推导适合声学网络建模的更简单的表示方法。
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引用次数: 0
Unifying temperature definition in atomistic and field representations of conservation laws 统一守恒定律原子表征和场表征中的温度定义
IF 3.5 3区 综合性期刊 Q1 Mathematics Pub Date : 2024-02-07 DOI: 10.1098/rspa.2023.0606
Youping Chen
In this work, a field representation of the conservation law of linear momentum is derived from the atomistic, using the theory of distributions as the mathematical tool, and expressed in terms of temperature field by defining temperature as a derived quantity as that in molecular kinetic theory and atomistic simulations. The formulation leads to a unified atomistic and continuum description of temperature and a new linear momentum equation that, supplemented by an interatomic potential, completely governs thermal and mechanical processes across scales from the atomic to the continuum. The conservation equation can be used to solve atomistic trajectories for systems at finite temperatures, as well as the evolution of field quantities in space and time, with atomic or multiscale resolution. Four sets of numerical examples are presented to demonstrate the efficacy of the formulation in capturing the effect of temperature and thermal fluctuations, including phonon density of states, thermally activated dislocation motion, dislocation formation during epitaxial processes, and attenuation of longitudinal acoustic waves as a result of their interaction with thermal phonons.
在这项工作中,利用分布理论作为数学工具,从原子论推导出了线性动量守恒定律的场表示法,并通过将温度定义为分子动理论和原子模拟中的导出量来表示温度场。通过这种表述方法,可以对温度进行统一的原子和连续描述,并建立一个新的线性动量方程,辅以原子间势能,可以完全控制从原子到连续尺度的热过程和机械过程。该守恒方程可用于求解有限温度下系统的原子轨迹,以及具有原子或多尺度分辨率的场量在空间和时间上的演化。本文介绍了四组数值示例,展示了该公式在捕捉温度和热波动影响方面的功效,包括声子态密度、热激活的位错运动、外延过程中的位错形成,以及纵向声波与热声子相互作用产生的衰减。
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引用次数: 0
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Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences
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