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Anaerobic digestates in agricultural soils: A systematic review of their effects on antibiotic resistance genes 农业土壤中的厌氧消化物:系统回顾其对抗生素抗性基因的影响。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1016/j.ram.2024.07.005
Marco Allegrini , María Celina Zabaloy
Tackling the dissemination of antibiotic resistance is one of the main global challenges. Manures from animal production are a recognized source of antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs) requiring appropriate treatment methods. One of the main approaches for manure treatment is anaerobic digestion (AD). Meta-analyses have demonstrated that AD can significantly reduce the load of ARGs. However, antibiotics, ARGs and MGEs still remain in the final product (digestate). A sustainable agricultural use of digestates under the One Health framework requires wide assessments of their effects in the soil resistome. The objective of this review was to present the state of the art of digestate effects on ARGs of agricultural soils, focusing exclusively on digestates from animal manures. A systematic review was conducted. The examination of the resulting literature indicated that although temporal decays are observed for a variety of ARGs in single-application and repeated-applications experiments, for certain ARGs the pre-treatment or control levels are not restored. However, the low number of studies and the heterogeneous experimental conditions preclude a clear understanding of the fate of ARGs in soil and their risk for agroecosystems. The inclusion of multiple MGEs and the assessment of the long-term influence of digestates on soil properties and microbial communities could be keystones for a better understanding of the risks associated with digestate-induced changes in the soil resistome.
应对抗生素耐药性的传播是全球面临的主要挑战之一。动物生产产生的粪便是公认的抗生素耐药性基因(ARGs)和移动遗传因子(MGEs)的来源,需要采用适当的处理方法。厌氧消化(AD)是粪便处理的主要方法之一。元分析表明,厌氧消化可显著减少 ARGs 的负荷。然而,抗生素、ARGs 和 MGEs 仍会残留在最终产品(沼渣)中。要在 "同一健康 "框架下实现沼渣的可持续农业利用,就必须对其在土壤抗性组中的影响进行广泛评估。本综述的目的是介绍沼渣对农业土壤ARGs影响的最新进展,重点关注来自动物粪便的沼渣。我们进行了系统性的回顾。研究结果表明,虽然在单次施用和重复施用实验中观察到了各种 ARGs 的时间衰减,但某些 ARGs 无法恢复到处理前或对照组的水平。然而,由于研究数量少,实验条件不尽相同,因此无法清楚地了解 ARGs 在土壤中的归宿及其对农业生态系统的风险。纳入多个多边环境协定以及评估沼渣对土壤特性和微生物群落的长期影响,是更好地了解沼渣引起的土壤抗性组变化的相关风险的关键。
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引用次数: 0
Investigación del perfil de resistencia a betalactámicos en cepas clínicas de Pseudomonas aeruginosa en Mexicali, 2019-2021 [调查墨西卡利铜绿假单胞菌菌株对 Beta-内酰胺类药物的耐药性概况:2019-2021 年]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1016/j.ram.2024.10.002
Ricardo Delgadillo-Valles , Dolores A. Marquez-Salazar , Donato A. Rechy-Iruretagoyena , Gerson N. Hernandez-Acevedo , Jonathan I. Arauz-Cabrera , Edwin Barrios-Villa
Pseudomonas aeruginosa is a Gram-negative bacillus capable of developing in humid environments and animal tissue. The interest in this bacterium lies in its ability to cause opportunistic diseases in patients with cystic fibrosis and healthcare-associated infections (HAIs). The objective of our study was to characterize the resistance profile of strains causing HAIs isolated in hospitals within our community, from January 2019 to December 2021. This descriptive, prospective, and cross-sectional study involved the isolation of strains from January 2019 to December 2021 at the Autonomous University of Baja California (UABC). The identification of the strains was carried out using Matrix-Assisted Laser Desorption/Ionization-Time of Flight (MALDI-TOF) mass spectrometry, and the detection of beta-lactam resistance was performed according to the criteria of the Clinical and Laboratory Standards Institute as stipulated in the CLSI M100-S27 document. A total of 649 samples were obtained from January 2019 to December 2021, including sputum (335 samples), urine (119 samples), and wounds (91 samples). Resistance to carbapenems was 38.94% for meropenem and 21.97% for imipenem. For cephalosporins, there was a 21.05% resistance rate for cefepime, 22.9% for ceftazidime, and 24.78% for ceftolozane-tazobactam. The prevalence of antimicrobial resistance has increased over time, which is attributable to both selective pressure and the evolution of the microorganisms themselves.
铜绿假单胞菌是一种革兰氏阴性杆菌,能够在潮湿环境和动物组织中生长。人们对这种细菌的兴趣在于它能引起囊性纤维化患者的机会性疾病和医疗相关感染(HAIs)。我们的研究目的是分析 2019 年 1 月至 2021 年 12 月期间在社区内的医院中分离到的导致 HAIs 的菌株的耐药性特征。这项描述性、前瞻性和横断面研究涉及从 2019 年 1 月至 2021 年 12 月在下加利福尼亚自治大学(UABC)分离的菌株。采用基质辅助激光解吸/电离-飞行时间(MALDI-TOF)质谱法对菌株进行鉴定,并根据 CLSI M100-S27 文件中规定的临床和实验室标准研究所的标准对β-内酰胺耐药性进行检测。从2019年1月至2021年12月,共采集了649份样本,包括痰(335份样本)、尿(119份样本)和伤口(91份样本)。美罗培南对碳青霉烯类的耐药率为 38.94%,亚胺培南为 21.97%。头孢菌素类药物中,头孢吡肟的耐药率为 21.05%,头孢他啶为 22.9%,头孢唑烷-他唑巴坦为 24.78%。随着时间的推移,抗菌素耐药性的发生率也在增加,这既是选择性压力造成的,也是微生物自身进化的结果。
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引用次数: 0
Incidencia de microorganismos deteriorantes de la calidad de cerveza en microcervecerías de Buenos Aires [布宜诺斯艾利斯微型啤酒厂啤酒腐败微生物的发生率]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-10-01 DOI: 10.1016/j.ram.2024.09.006
Juan I. Eizaguirre , Clara Bruzone , Ignacio Duhourq , Diego Libkind , Pablo S. Aguilar
Microbial contaminations pose a significant concern within the brewing industry, exerting negative effects on the organoleptic quality of the product and leading to substantial economic losses. The exponential proliferation of craft breweries in Argentina in recent years has heightened the demand for constant improvements in processes to ensure excellence in beer production. However, the stringency of microbiological quality controls remains a vulnerable area. This study assesses the prevalence of beer contaminants in samples from 10 breweries located in Buenos Aires City (CABA) and Greater Buenos Aires area (GBA). The results revealed the presence of microorganisms in 70% of the analyzed samples. Fifteen bacteria and 19 yeasts were successfully isolated, with bacteria belonging to the genera Acetobacter and Staphylococcus, and yeasts to the genera Saccharomyces, Lodderomyces, Candida, and Pichia. Accurately identifying these microorganisms provides producers with the necessary information for formulating action plans to improve cleaning and sanitization protocols in their facilities. This proactive approach not only has the potential to mitigate economic losses associated with microbial contamination but also contributes to maintaining and elevating quality standards in regional craft beer production.
微生物污染是酿造业的一个重大问题,会对产品的感官质量造成负面影响,并导致巨大的经济损失。近年来,阿根廷手工酿造啤酒的数量激增,这就要求不断改进工艺,以确保啤酒生产的卓越品质。然而,微生物质量控制的严格程度仍然是一个薄弱环节。本研究评估了布宜诺斯艾利斯市(CABA)和大布宜诺斯艾利斯地区(GBA)10 家啤酒厂样品中啤酒污染物的流行情况。结果显示,70% 的分析样品中都含有微生物。成功分离出 15 种细菌和 19 种酵母菌,其中细菌属于醋酸杆菌属和葡萄球菌属,酵母菌属于酵母菌属、菟丝子属、念珠菌属和毕赤菌属。准确识别这些微生物可为生产商提供必要的信息,帮助他们制定行动计划,改进设备的清洁和消毒规程。这种积极主动的方法不仅有可能减轻微生物污染带来的经济损失,还有助于保持和提高地区精酿啤酒生产的质量标准。
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引用次数: 0
Impact of Kluyveromyces marxianus VM004 culture conditions on the cell wall structure and its influence on aflatoxin B1 binding. Kluyveromyces marxianus VM004 培养条件对细胞壁结构的影响及其对黄曲霉毒素 B1 结合力的影响。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-09-20 DOI: 10.1016/j.ram.2024.07.004
Carina Pereyra, María Del Pilar Monge, Silvestre Bongiovanni, Andrea Cristofolini, Sergio Campos, Lilia Cavaglieri

The aim of this study was to determine the impact of Kluyveromyces marxianus VM004 culture conditions on the cell wall (CW) structure and its influence on aflatoxin B1 binding. The yeast was inoculated into two types of culture media: yeast extract-peptone-dextrose (YPD) broth and dried distiller's grains with solubles (DDG). The CW was extracted from the biomass produced in these media. AFB1 (150ng/ml) adsorption tests using the biomass (1×107cells/ml) and the CW (0.001g) were performed at pH 2 and pH 8. Transmission electron microscopy (TEM) evaluated the CW thickness, and infrared spectroscopy (IR) determined the CW composition. Biomass production in YPD was higher than that in DDG. Cell diameter (μm) and CW thickness (μm) increased in the DDG medium. The CW percentage obtained in DDG was higher than that in YPD. The absorbance of carbohydrates by IR was higher in YPD. pH influenced AFB1 adsorption, which was lower at pH 8. The proportion of β-glucan and chitin present in CW was higher in the YPD medium. The IR method allowed to study the CW carbohydrate variation under the influence of these carbon sources. In conclusion, the culture media composition influenced the β-glucan and chitin composition and consequently, AFB1 adsorption.

本研究旨在确定马氏酵母菌 VM004 培养条件对细胞壁(CW)结构的影响及其对黄曲霉毒素 B1 结合力的影响。将酵母接种到两种培养基中:酵母提取物-蛋白胨-葡萄糖(YPD)肉汤和带溶质的干蒸馏谷物(DDG)。从这些培养基中产生的生物量中提取 CW。透射电子显微镜(TEM)评估了 CW 的厚度,红外光谱(IR)确定了 CW 的成分。YPD 中的生物质产量高于 DDG。在 DDG 培养基中,细胞直径(μm)和 CW 厚度(μm)均有所增加。在 DDG 中获得的 CW 百分比高于在 YPD 中获得的 CW 百分比。在 YPD 培养基中,碳水化合物的红外吸光度较高。 pH 值对 AFB1 的吸附有影响,pH 值为 8 时吸附较低。 在 YPD 培养基中,CW 中的β-葡聚糖和甲壳素比例较高。红外方法有助于研究在这些碳源影响下 CW 碳水化合物的变化。总之,培养基组成影响了β-葡聚糖和甲壳素的组成,进而影响了对AFB1的吸附。
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引用次数: 0
Prokaryotes versus Eukaryotes: Which is the host and which is the guest? 原核生物与真核生物:哪个是主人,哪个是客人?
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.09.001
Guillermo Tellez-Isaias , Dante Javier Bueno
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引用次数: 0
Caracterización de una comunidad microbiana aislada de colonias de abejas melíferas [从蜜蜂群中分离出来的微生物群落的特征]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.01.001

The microbial communities within honey bee colonies contribute to the defense against pathogens. The goal of this study was to isolate, identify, and lyophilize lactic acid bacteria and bifidobacteria from the gut of nurse bees and bee bread in Apis mellifera colonies. Bacterial cultures from the intestinal content were conducted, and subsequently identified, sequenced, and lyophilized. Cross-antagonism among them was also assessed. Studies based on 16 S rRNA gene Sanger sequencing revealed that the MC3 strain had 100% identity with Bifidobacterium choladohabitans, the PP2B strain showed 99.16% similarity with Enterococcus faecium, while the PP1 strain exhibited 99.49% similarity with Lacticaseibacillus sp. and the PP1B strain showed 99.32% similarity with Lacticaseibacillus sp. There was no evidence of cross-antagonism among the strains, and the lyophilization process showed good stability and conservation. This is the first report of the isolation of B. choladohabitans from honey bee gut in Argentina, and also associates the presence of E. faecium with bee bread.

蜜蜂群落中的微生物群落有助于抵御病原体。本研究的目的是从蜜蜂群中的哺育蜂和蜜蜂面包的肠道中分离、鉴定和冻干乳酸菌和双歧杆菌。从肠道内容物中进行了细菌培养,随后进行了鉴定、测序和冻干。还对它们之间的交叉拮抗作用进行了评估。基于 16 S rRNA 基因 Sanger 测序的研究表明,MC3 菌株与胆酸双歧杆菌的相似度为 100%,PP2B 菌株与粪肠球菌的相似度为 99.16%,而 PP1 菌株与乳酸杆菌的相似度为 99.49%。菌株之间没有交叉拮抗的迹象,冻干过程显示出良好的稳定性和保存性。这是阿根廷首次从蜜蜂肠道中分离出B. Choladohabitans的报告,同时也将粪肠球菌与蜜蜂面包联系起来。
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引用次数: 0
Los fructanos de agave promueven la formación de biopelícula in vitro en el consorcio probiótico Lactobacillus delbrueckii ssp. lactis, L. delbrueckii ssp. bulgaricus y Streptococcus thermophilus [龙舌兰果糖促进益生菌联合体--德尔布鲁贝克乳杆菌、保加利亚乳杆菌和嗜热链球菌--体外生物膜的形成]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.02.002

In recent years the relationship between the intestinal microbiota, the host and chronic non-communicable diseases has brought interest into the study of its formation and maintenance in the host. Lactic acid bacteria (BAL) are Gram-positive bacteria with probiotic activity, which have been associated with many health benefits, such as decreased body fat mass and lower risk of type II diabetes mellitus. One of the main colonization mechanisms and bacteria survival strategies is the production of biofilms and the use of prebiotics as substrates to achieve a balance within intestinal microbiota. However, there is not enough evidence to demonstrate the biofilm formation in the presence of agave fructans (AF). This study aimed to evaluate in vitro the biofilm formation in a consortium of lactic acid bacteria: Lactobacillus delbrueckii ssp. lactis, Lactobacillus delbrueckii ssp. bulgaricus y Streptococcus thermophilus in the presence of AF at different concentrations: 0%, 0,1%, 4%, 8% y 16%. The addition of 0,1% of AF correlates with the best capacity for biofilm formation. The findings imply the possibility of modulating the biofilm formation of lactic acid bacteria with AF. These results can contribute positively to the host, by generating intestinal homeostasis, colonization resistance, stability to food digestion and chemical modifications of drugs and carry out beneficial functions to the health.

近年来,肠道微生物群、宿主和慢性非传染性疾病之间的关系引起了人们对其在宿主体内形成和维持的研究兴趣。乳酸菌(BAL)是具有益生菌活性的革兰氏阳性细菌,与许多健康益处有关,如减少体脂量和降低 II 型糖尿病风险。主要的定植机制和细菌生存策略之一是产生生物膜和使用益生元作为底物,以实现肠道微生物群的平衡。然而,目前还没有足够的证据证明龙舌兰果聚糖(AF)会形成生物膜。本研究旨在体外评估乳酸菌群的生物膜形成情况:乳酸杆菌、保加利亚乳杆菌和嗜热链球菌在不同浓度的龙舌兰果糖存在下的生物膜形成情况:0%, 0,1%, 4%, 8% y 16%.添加 0.1% AF 的生物膜形成能力最强。研究结果表明,添加 AF 有可能调节乳酸菌生物膜的形成。这些结果可通过产生肠道平衡、抗定植性、食物消化稳定性和药物化学修饰,对宿主做出积极贡献,并对健康产生有益的作用。
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引用次数: 0
Obtaining more contaminant-resistant variants from a native Chlorella vulgaris strain 从本地绿藻菌株中获取更多抗污染变种。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.05.005
Andrea G. Trentini , Uriel D. Salvio , Juan G. Sánchez Novoa , María D. Groppa , Juana M. Navarro Llorens , Patricia L. Marconi

Cildáñez stream (in Matanza-Riachuelo basin, Buenos Aires) is one of the most polluted watercourses of Argentina, containing a mixed contamination from agricultural and industrial wastes. The application of water bioremediation processes for this kind of effluent will require microorganisms with a high tolerance to contamination. In this sense, obtaining higher contaminant-resistant microalgae lines is widely desired. In this study, adaptive laboratory evolution (ALE) and random mutagenesis were used to obtain Chlorella vulgaris LMPA-40 strains adapted to grow in polluted water from the Cildáñez stream. The ALE process was performed by 22 successive subcultures under selective pressure (Cildáñez wastewater alone or with the addition of phenol or H2O2) while random mutagenesis was performed with UV-C radiation at 275 nm. Not all the cell lines obtained after ALE could adapt enough to overcome the stress caused by the Cildáñez wastewater, indicating that the process is quite random and depends on the stressor used. The best results were obtained for the Cildáñez wastewater adapted cells (Cild 3 strain) that were more resistant than the original strain. The concentration of protein, Chlorophyll A, Chlorophyll B, and carotenoids in the Cild 3 ALE evolved strain was higher than that of the control strain. However, this strain exhibited half of the lipid content compared to the same control strain. Interestingly, these alterations and the acquired tolerance may be reversed over time during storage. These findings suggest that the acquisition of novel cell lines could not be permanent, a fact that must be considered for future trials.

Cildáñez 河(位于布宜诺斯艾利斯 Matanza-Riachuelo 盆地)是阿根廷污染最严重的河道之一,含有农业和工业废水的混合污染。对这类污水采用水生物修复工艺需要微生物对污染有较高的耐受性。从这个意义上说,获得抗污染能力更强的微藻品系是人们的普遍期望。在这项研究中,利用实验室适应性进化(ALE)和随机诱变来获得适应在 Cildáñez 溪污染水中生长的绿球藻 LMPA-40 菌株。ALE过程是在选择性压力(单独或添加苯酚或H2O2的Cildáñez废水)下通过22次连续的亚培养进行的,而随机诱变则是在275纳米波长的UV-C辐射下进行的。并非所有经过 ALE 处理的细胞系都能适应并克服 Cildáñez 废水造成的压力,这表明诱变过程是随机的,取决于所使用的压力源。适应了 Cildáñez 废水的细胞(Cild 3 株系)获得的结果最好,它们比原来的株系更具抵抗力。Cild 3 ALE 进化株的蛋白质、叶绿素 A、叶绿素 B 和类胡萝卜素浓度高于对照株。然而,该菌株的脂质含量只有对照菌株的一半。有趣的是,这些变化和获得的耐受性可能会随着储存时间的推移而逆转。这些发现表明,新型细胞系的获得不可能是永久性的,这一点在未来的试验中必须加以考虑。
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引用次数: 0
Primer caso autóctono de fiebre manchada asociado a la Reserva Ecológica Costanera Sur, Ciudad Autónoma de Buenos Aires [与布宜诺斯艾利斯市南海岸生态保护区有关的首例自生斑疹热病例]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.06.001
Jessica Monroig , Marina de Seta , Jose Carranza , Sergio Giamperetti , Bettina Deodato , Rita Armitano , Paula Díaz Pérez , María Nazarena de Salvo , Gabriel Leonardo Cicuttin , Susana Lloveras

The first autochthonous case of rickettsiosis is reported here. The case occurred in the Costanera Sur Ecological Reserve, a protected area of the City of Buenos Aires, in August 2022, where 4 species of ticks were found, namely Amblyomma aureolatum, Ixodes auritulus sensu lato, Rhipicephalus sanguineus sensu stricto and Amblyomma triste.

The epidemiological, ecological, clinical and laboratory aspects that allowed timely diagnosis and appropriate treatment are also described.

本文报告了首例立克次体病自体病例。该病例于2022年8月发生在布宜诺斯艾利斯市的一个保护区--Costanera Sur生态保护区,在那里发现了4种蜱虫,分别是Amblyomma aureolatum、Ixodes auritulus sensu lato、Rhipicephalus sanguineus sensu stricto和Amblyomma triste。报告还介绍了流行病学、生态学、临床和实验室方面的情况,以便及时诊断和适当治疗。
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引用次数: 0
Caracterización molecular de aislamientos de Listeria monocytogenes de origen humano y alimentario en Argentina, 2018-2023 [2018-2023年阿根廷从人类和食物中分离的单核细胞增生李斯特菌的分子特征]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.03.002

Human listeriosis is an infectious disease caused by Listeria monocytogenes. The invasive form of this disease leads to a high rate of hospitalizations and fatality. The main mode of transmission is through contaminated ready-to-eat foods such as dairy, vegetables and meat products. The knowledge of the diversity and population dynamics of isolates collected from human and food sources is essential for the detection of clusters and the identification of common sites of infection. The aim of this study was the molecular characterization of L. monocytogenes isolates in Argentina. We sequenced a total of 63 isolates, 35 from human and 28 from food sources, collected between 2018 and 2023. Our genomic study divided the isolates into two lineages, four serogroups, 17 sequence types and 15 clonal complexes (CCs). The hypervirulent clone CC1 (lineage I; serogroup IVb) predominated in human and food samples. The phylogenomic analysis showed a high and possible epidemiological relationship between isolates from human and/or food sources, suggesting the presence of transmission chains in our country. These findings highlight the need to strengthen genomic surveillance of L. monocytogenes in Argentina. The identification of geographic distribution and characteristics of predominant and emerging clones from human and food sources might help to focus action plans and public health policies better directed at the control and prevention of listeriosis.

人类李斯特菌病是由单核细胞增生李斯特菌引起的一种传染病。这种疾病的侵袭性形式导致很高的住院率和死亡率。主要传播方式是通过受污染的即食食品,如乳制品、蔬菜和肉制品。了解从人类和食物中收集的分离物的多样性和种群动态,对于检测集群和确定共同的感染地点至关重要。本研究的目的是对阿根廷的单核细胞增生性酵母菌分离物进行分子鉴定。我们对 2018 年至 2023 年间收集的 63 个分离物进行了测序,其中 35 个来自人类,28 个来自食物来源。我们的基因组研究将分离物分为两个系、四个血清群、17 个序列类型和 15 个克隆复合体(CC)。在人类和食物样本中,高病毒性克隆CC1(系I;血清群IVb)占主导地位。系统发生组分析表明,来自人类和/或食物来源的分离物之间存在高度和可能的流行病学关系,表明我国存在传播链。这些发现凸显了加强阿根廷单核细胞增多症基因组监测的必要性。确定来自人类和食物来源的主要克隆和新出现克隆的地理分布和特征,可能有助于使行动计划和公共卫生政策更有针对性,从而更好地控制和预防李斯特菌病。
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引用次数: 0
期刊
Revista Argentina de microbiologia
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