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Caracterización molecular de aislamientos de Listeria monocytogenes de origen humano y alimentario en Argentina, 2018-2023 [2018-2023年阿根廷从人类和食物中分离的单核细胞增生李斯特菌的分子特征]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.03.002

Human listeriosis is an infectious disease caused by Listeria monocytogenes. The invasive form of this disease leads to a high rate of hospitalizations and fatality. The main mode of transmission is through contaminated ready-to-eat foods such as dairy, vegetables and meat products. The knowledge of the diversity and population dynamics of isolates collected from human and food sources is essential for the detection of clusters and the identification of common sites of infection. The aim of this study was the molecular characterization of L. monocytogenes isolates in Argentina. We sequenced a total of 63 isolates, 35 from human and 28 from food sources, collected between 2018 and 2023. Our genomic study divided the isolates into two lineages, four serogroups, 17 sequence types and 15 clonal complexes (CCs). The hypervirulent clone CC1 (lineage I; serogroup IVb) predominated in human and food samples. The phylogenomic analysis showed a high and possible epidemiological relationship between isolates from human and/or food sources, suggesting the presence of transmission chains in our country. These findings highlight the need to strengthen genomic surveillance of L. monocytogenes in Argentina. The identification of geographic distribution and characteristics of predominant and emerging clones from human and food sources might help to focus action plans and public health policies better directed at the control and prevention of listeriosis.

人类李斯特菌病是由单核细胞增生李斯特菌引起的一种传染病。这种疾病的侵袭性形式导致很高的住院率和死亡率。主要传播方式是通过受污染的即食食品,如乳制品、蔬菜和肉制品。了解从人类和食物中收集的分离物的多样性和种群动态,对于检测集群和确定共同的感染地点至关重要。本研究的目的是对阿根廷的单核细胞增生性酵母菌分离物进行分子鉴定。我们对 2018 年至 2023 年间收集的 63 个分离物进行了测序,其中 35 个来自人类,28 个来自食物来源。我们的基因组研究将分离物分为两个系、四个血清群、17 个序列类型和 15 个克隆复合体(CC)。在人类和食物样本中,高病毒性克隆CC1(系I;血清群IVb)占主导地位。系统发生组分析表明,来自人类和/或食物来源的分离物之间存在高度和可能的流行病学关系,表明我国存在传播链。这些发现凸显了加强阿根廷单核细胞增多症基因组监测的必要性。确定来自人类和食物来源的主要克隆和新出现克隆的地理分布和特征,可能有助于使行动计划和公共卫生政策更有针对性,从而更好地控制和预防李斯特菌病。
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引用次数: 0
Los fructanos de agave promueven la formación de biopelícula in vitro en el consorcio probiótico Lactobacillus delbrueckii ssp. lactis, L. delbrueckii ssp. bulgaricus y Streptococcus thermophilus [龙舌兰果糖促进益生菌联合体--德尔布鲁贝克乳杆菌、保加利亚乳杆菌和嗜热链球菌--体外生物膜的形成]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.02.002

In recent years the relationship between the intestinal microbiota, the host and chronic non-communicable diseases has brought interest into the study of its formation and maintenance in the host. Lactic acid bacteria (BAL) are Gram-positive bacteria with probiotic activity, which have been associated with many health benefits, such as decreased body fat mass and lower risk of type II diabetes mellitus. One of the main colonization mechanisms and bacteria survival strategies is the production of biofilms and the use of prebiotics as substrates to achieve a balance within intestinal microbiota. However, there is not enough evidence to demonstrate the biofilm formation in the presence of agave fructans (AF). This study aimed to evaluate in vitro the biofilm formation in a consortium of lactic acid bacteria: Lactobacillus delbrueckii ssp. lactis, Lactobacillus delbrueckii ssp. bulgaricus y Streptococcus thermophilus in the presence of AF at different concentrations: 0%, 0,1%, 4%, 8% y 16%. The addition of 0,1% of AF correlates with the best capacity for biofilm formation. The findings imply the possibility of modulating the biofilm formation of lactic acid bacteria with AF. These results can contribute positively to the host, by generating intestinal homeostasis, colonization resistance, stability to food digestion and chemical modifications of drugs and carry out beneficial functions to the health.

近年来,肠道微生物群、宿主和慢性非传染性疾病之间的关系引起了人们对其在宿主体内形成和维持的研究兴趣。乳酸菌(BAL)是具有益生菌活性的革兰氏阳性细菌,与许多健康益处有关,如减少体脂量和降低 II 型糖尿病风险。主要的定植机制和细菌生存策略之一是产生生物膜和使用益生元作为底物,以实现肠道微生物群的平衡。然而,目前还没有足够的证据证明龙舌兰果聚糖(AF)会形成生物膜。本研究旨在体外评估乳酸菌群的生物膜形成情况:乳酸杆菌、保加利亚乳杆菌和嗜热链球菌在不同浓度的龙舌兰果糖存在下的生物膜形成情况:0%, 0,1%, 4%, 8% y 16%.添加 0.1% AF 的生物膜形成能力最强。研究结果表明,添加 AF 有可能调节乳酸菌生物膜的形成。这些结果可通过产生肠道平衡、抗定植性、食物消化稳定性和药物化学修饰,对宿主做出积极贡献,并对健康产生有益的作用。
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引用次数: 0
Primer caso autóctono de fiebre manchada asociado a la Reserva Ecológica Costanera Sur, Ciudad Autónoma de Buenos Aires [与布宜诺斯艾利斯市南海岸生态保护区有关的首例自生斑疹热病例]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.06.001
Jessica Monroig , Marina de Seta , Jose Carranza , Sergio Giamperetti , Bettina Deodato , Rita Armitano , Paula Díaz Pérez , María Nazarena de Salvo , Gabriel Leonardo Cicuttin , Susana Lloveras

The first autochthonous case of rickettsiosis is reported here. The case occurred in the Costanera Sur Ecological Reserve, a protected area of the City of Buenos Aires, in August 2022, where 4 species of ticks were found, namely Amblyomma aureolatum, Ixodes auritulus sensu lato, Rhipicephalus sanguineus sensu stricto and Amblyomma triste.

The epidemiological, ecological, clinical and laboratory aspects that allowed timely diagnosis and appropriate treatment are also described.

本文报告了首例立克次体病自体病例。该病例于2022年8月发生在布宜诺斯艾利斯市的一个保护区--Costanera Sur生态保护区,在那里发现了4种蜱虫,分别是Amblyomma aureolatum、Ixodes auritulus sensu lato、Rhipicephalus sanguineus sensu stricto和Amblyomma triste。报告还介绍了流行病学、生态学、临床和实验室方面的情况,以便及时诊断和适当治疗。
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引用次数: 0
Obtaining more contaminant-resistant variants from a native Chlorella vulgaris strain 从本地绿藻菌株中获取更多抗污染变种。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.05.005
Andrea G. Trentini , Uriel D. Salvio , Juan G. Sánchez Novoa , María D. Groppa , Juana M. Navarro Llorens , Patricia L. Marconi

Cildáñez stream (in Matanza-Riachuelo basin, Buenos Aires) is one of the most polluted watercourses of Argentina, containing a mixed contamination from agricultural and industrial wastes. The application of water bioremediation processes for this kind of effluent will require microorganisms with a high tolerance to contamination. In this sense, obtaining higher contaminant-resistant microalgae lines is widely desired. In this study, adaptive laboratory evolution (ALE) and random mutagenesis were used to obtain Chlorella vulgaris LMPA-40 strains adapted to grow in polluted water from the Cildáñez stream. The ALE process was performed by 22 successive subcultures under selective pressure (Cildáñez wastewater alone or with the addition of phenol or H2O2) while random mutagenesis was performed with UV-C radiation at 275 nm. Not all the cell lines obtained after ALE could adapt enough to overcome the stress caused by the Cildáñez wastewater, indicating that the process is quite random and depends on the stressor used. The best results were obtained for the Cildáñez wastewater adapted cells (Cild 3 strain) that were more resistant than the original strain. The concentration of protein, Chlorophyll A, Chlorophyll B, and carotenoids in the Cild 3 ALE evolved strain was higher than that of the control strain. However, this strain exhibited half of the lipid content compared to the same control strain. Interestingly, these alterations and the acquired tolerance may be reversed over time during storage. These findings suggest that the acquisition of novel cell lines could not be permanent, a fact that must be considered for future trials.

Cildáñez 河(位于布宜诺斯艾利斯 Matanza-Riachuelo 盆地)是阿根廷污染最严重的河道之一,含有农业和工业废水的混合污染。对这类污水采用水生物修复工艺需要微生物对污染有较高的耐受性。从这个意义上说,获得抗污染能力更强的微藻品系是人们的普遍期望。在这项研究中,利用实验室适应性进化(ALE)和随机诱变来获得适应在 Cildáñez 溪污染水中生长的绿球藻 LMPA-40 菌株。ALE过程是在选择性压力(单独或添加苯酚或H2O2的Cildáñez废水)下通过22次连续的亚培养进行的,而随机诱变则是在275纳米波长的UV-C辐射下进行的。并非所有经过 ALE 处理的细胞系都能适应并克服 Cildáñez 废水造成的压力,这表明诱变过程是随机的,取决于所使用的压力源。适应了 Cildáñez 废水的细胞(Cild 3 株系)获得的结果最好,它们比原来的株系更具抵抗力。Cild 3 ALE 进化株的蛋白质、叶绿素 A、叶绿素 B 和类胡萝卜素浓度高于对照株。然而,该菌株的脂质含量只有对照菌株的一半。有趣的是,这些变化和获得的耐受性可能会随着储存时间的推移而逆转。这些发现表明,新型细胞系的获得不可能是永久性的,这一点在未来的试验中必须加以考虑。
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引用次数: 0
Are Mycoplasma pneumoniae coinfections frequent in COVID-19 patients? A systematic review COVID-19 患者是否经常合并肺炎支原体感染?系统综述。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.05.002

Understanding the proportion of SARS-CoV-2 patients with Mycoplasma pneumoniae coinfection is crucial for treating patients suffering from coronavirus disease (COVID-19), help to ensure responsible use of antibiotics and minimize the negative consequences of overuse. In addition, this knowledge could have an impact on empirical antibiotic management guidelines for patients with COVID-19. This systematic review aimed to identify the prevalence of M. pneumoniae in patients with coronavirus disease 2019 (COVID-19).

A bibliographic search of studies published in Spanish or English was conducted using the PubMed search engine. Fourteen articles from different continents (America, Asia and Europe) were included, involving a total of 5855 patients in these studies. The mean age of COVID-19 patients with M. pneumoniae was 48 years old (range 1–107), most of whom were male. The detection of laboratory-confirmed M. pneumoniae infection varied between 0 and 33.3%. Most of patients referred fever, cough, and dyspnea, and received empirical antibiotic treatment. Bacterial coinfection was not associated with increased ICU admission and mortality. The prevalence of coinfection showed extremely dissimilar figures according to the population studied and diagnostic criteria. However, it is important to develop Latin American studies, given the heterogeneity observed in the studies conducted in different countries. Standardized definitions should be developed in order to be able to assess the impact of coinfections in patients with a diagnosis of COVID-19.

了解 SARS-CoV-2 患者合并肺炎支原体感染的比例对于治疗冠状病毒病(COVID-19)患者至关重要,有助于确保负责任地使用抗生素,并将过度使用抗生素的负面影响降至最低。此外,这方面的知识还可能对COVID-19患者的经验性抗生素管理指南产生影响。本系统综述旨在确定2019年冠状病毒病(COVID-19)患者中肺炎霉菌的流行情况。我们使用 PubMed 搜索引擎对西班牙文或英文发表的研究进行了文献检索。共收录了来自不同大洲(美洲、亚洲和欧洲)的14篇文章,这些研究共涉及5855名患者。COVID-19 肺炎双球菌患者的平均年龄为 48 岁(1-107 岁不等),其中大部分为男性。实验室确诊的肺炎双球菌感染率介于 0% 与 33.3% 之间。大多数患者都伴有发热、咳嗽和呼吸困难,并接受了经验性抗生素治疗。细菌合并感染与入住重症监护室和死亡率的增加无关。根据所研究人群和诊断标准的不同,合并感染的流行率显示出了极为不同的数字。然而,鉴于在不同国家进行的研究中观察到的异质性,在拉丁美洲开展研究非常重要。应制定标准化的定义,以便能够评估合并感染对确诊为 COVID-19 的患者的影响。
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引用次数: 0
Arthrobacter sp. UMCV2, and its compound N,N-dimethylhexadecilamine promote nodulation in Medicago truncatula by Sinorhizobium medicae 节杆菌 UMCV2 及其化合物 N,N-二甲基十六烷基二胺可促进药用中部单胞菌(Sinorhizobium medicae)在蔓生美智子(Medicago truncatula)中的结球作用。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.03.004

The actinobacterium Arthrobacter sp. UMCV2 promotes plant growth through the emission of N,N-dimethylhexadecilamine (DMHDA). The MedicagoSinorhizobium nodulation has been employed to study symbiotic nitrogen fixation by rhizobia in nodulating Fabaceae. Herein, we isolated three Sinorhizobium medicae strains that were used to induce nodules in Medicago truncatula. The co-inoculation of M. truncatula with Arthrobacter sp. strain UMCV2 produced a higher number of effective nodules than inoculation with only Sinorhizobium strains. Similarly, the exposure of inoculated M. truncatula to DMHDA produced a greater number of effective nodules compared to non-exposed plants. Thus, we conclude that Arthrobacter sp. UMCV2 promotes nodulation, and propose that this effect is produced, at least partly, via DMHDA emission.

放线菌 Arthrobacter sp. UMCV2 通过释放 N,N-二甲基十六胺(DMHDA)促进植物生长。人们利用美达甘子-星状单胞菌(Medicago-Sinorhizobium)的结节来研究根瘤菌在豆科植物结节中的共生固氮作用。在此,我们分离了三株药用中尼氏菌(Sinorhizobium medicae),用于诱导美智子(Medicago truncatula)结瘤。与只接种单胞菌菌株相比,共同接种节杆菌菌株 UMCV2 能产生更多的有效结核。同样,接种后的 M. truncatula 与未接种的植物相比,暴露于 DMHDA 会产生更多的有效瘤。因此,我们得出结论:节杆菌 UMCV2 能促进结瘤,并认为这种效应至少部分是通过 DMHDA 的释放产生的。
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引用次数: 0
Cyanobacteria in soils under dryland agricultural production systems 旱地农业生产系统土壤中的蓝藻。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.03.003
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引用次数: 0
Risk factors and mortality of candidemia in a children's public hospital in Sao Paulo, Brazil 巴西圣保罗一家公立儿童医院念珠菌病的风险因素和死亡率。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2023.09.002

Candida bloodstream infections in children are of special concern in neonatal and pediatric intensive care and patients with comorbidities. This study aimed to estimate the incidence and risk factors associated with mortality in candidemia cases occurring in a public children's hospital in Ribeirao Preto, Brazil. It is a retrospective transversal study. Every patient under the age of 18 admitted to the study facility from January 1, 2013, to December 31, 2019, was considered potentially eligible to be included if they had candidemia. We collected clinical data from medical records. We included 113 blood cultures yielding positive results for Candida. The incidence rate was 2.12 per 1000 admissions. The most common Candida species was Candida parapsilosis. Septic shock during the candidemia episode was the only clinical outcome associated with a relative risk-adjusted (RRa) of 2.77 with an interval >1 (1.12–6.85). Our findings show that the incidence rate and mortality rates of candidemia are in line with those in other children's services in Brazil. We found a global mortality rate of 28.31% (32/113) from candidemia episodes. We highlight the predominance of non-albicans Candida species including C. parapsilosis. Septic shock was the most important factor showing a significant risk of mortality.

儿童念珠菌血流感染是新生儿和儿科重症监护以及合并症患者特别关注的问题。本研究旨在估算巴西里贝拉普雷图一家公立儿童医院念珠菌血症病例的发病率和与死亡率相关的风险因素。这是一项回顾性横向研究。2013年1月1日至2019年12月31日期间,研究机构收治的所有18岁以下患者,只要患有念珠菌血症,都有可能被纳入研究范围。我们从病历中收集了临床数据。我们纳入了 113 例血液培养结果呈念珠菌阳性的患者。发病率为每 1000 例住院患者中有 2.12 例。最常见的念珠菌为副丝状念珠菌。念珠菌血症期间的脓毒性休克是唯一与相对风险调整 (RRa) 2.77 相关的临床结果,风险调整区间为>1(1.12-6.85)。我们的研究结果表明,念珠菌血症的发病率和死亡率与巴西其他儿童医疗机构的情况一致。我们发现,念珠菌血症病例的总死亡率为 28.31%(32/113)。我们强调,非阿氏念珠菌属念珠菌包括副丝状念珠菌占主导地位。脓毒性休克是导致死亡的最重要因素。
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引用次数: 0
Emergence of lineage III of Shigella sonnei ST152 belonging to a high-risk clone harboring the blaCTX-M-15 gene in Peru 秘鲁出现了属于携带 blaCTX-M-15 基因的高风险克隆的子代志贺氏菌 ST152 第三系。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.02.007

Multidrug-resistant Shigella sonnei ST152, global lineage III, is a high-risk clone, whose dissemination has limited therapeutic options for shigellosis. This study aimed to characterize two isolates of S. sonnei, which were recovered in Lima, Peru, during November 2019, exhibiting resistance to extended-spectrum cephalosporins and quinolones, and concurrently harboring blaCTX-M-15 and qnrS1 genes, in addition to mutations in gyrA-S83L. These isolates were resistant to ceftriaxone, ciprofloxacin and trimethoprim/sulfamethoxazole. The molecular analysis showed that both isolates belonged to lineage III, sublineages IIIa and IIIb. The blaCTX-M-15 gene was located in the same genetic platform as qnrS1, flanked upstream by ISKpn19, on a conjugative plasmid belonging to the IncI-γ group. To the best of our knowledge, this would be the first report on S. sonnei isolates carrying the blaCTX-M-15 gene in Peru. The global dissemination of S. sonnei ST152, co-resistant to β-lactams and quinolones, could lead to a worrisome scenario in the event of potential acquisition of genetic resistance mechanisms to azithromycin.

具有多重耐药性的宋内志贺菌 ST152(全球Ⅲ系)是一种高风险克隆,其传播限制了志贺菌病的治疗方案。本研究旨在描述2019年11月在秘鲁利马发现的两株子代志贺氏菌分离株的特征,这两株分离株表现出对广谱头孢菌素和喹诺酮类药物的耐药性,同时携带blaCTX-M-15和qnrS1基因,此外gyrA-S83L也发生了突变。这些分离物对头孢曲松、环丙沙星和三甲双胍/磺胺甲噁唑具有抗药性。分子分析表明,这两个分离株属于 III 系,IIIa 和 IIIb 亚系。blaCTX-M-15 基因与 qnrS1 位于同一基因平台,其上游侧翼为 ISKpn19,位于属于 IncI-γ 组的共轭质粒上。据我们所知,这是秘鲁首次报道携带 blaCTX-M-15 基因的 S. sonnei 分离物。对β-内酰胺类药物和喹诺酮类药物共同耐药的S. sonnei ST152在全球范围内的传播,可能会导致对阿奇霉素产生基因耐药机制,从而引发令人担忧的局面。
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引用次数: 0
Compilation of regulations and procedures for monitoring filamentous fungi in hospital environments 医院环境中丝状真菌监测规定和程序汇编。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.ram.2024.02.001

Air and surfaces in the hospital environment are a potential source of exposure to filamentous fungi (FF) that could cause invasive fungal diseases (IFD) in severely immunocompromised patients. The prevalent FF in IFD are species from the genera Aspergillus, Fusarium, Scedosporium, and those within the order Mucorales. We have compiled regulations and described the procedures used in the clinical mycology laboratory to assess the presence of FF in areas at risk for the development of IFD. The infection control committees of each establishment implement hospital policies to regulate and control processes aimed at preventing infections. Fungal load monitoring is an important step in this process to validate air quality in order to ensure a clean and protected environment for severely immunocompromised patients.

医院环境中的空气和物体表面是丝状真菌(FF)的潜在接触源,可导致免疫力严重低下的病人患上侵袭性真菌病(IFD)。IFD 中常见的 FF 是曲霉属、镰刀菌属、镰孢属和粘菌目中的真菌。我们汇编了相关规定,并介绍了临床真菌学实验室用于评估 IFD 高危地区 FF 存在情况的程序。每个机构的感染控制委员会都会执行医院政策,以规范和控制旨在预防感染的流程。真菌负荷监测是这一过程中验证空气质量的重要步骤,以确保为免疫力严重低下的患者提供清洁和受保护的环境。
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引用次数: 0
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Revista Argentina de microbiologia
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