Mungbean (Vigna radiata L. Wilczek) is a short-duration, nutritionally rich legume with high-quality proteins and micronutrients, making it an important dietary component for combating malnutrition and diversifying cereal-dominated cropping systems. However, its genetic improvement is constrained by a narrow genetic base and vulnerability to biotic and abiotic stresses. This study assessed the genetic diversity of 80 mungbean genotypes, comprising advanced breeding lines and released cultivars, across four environments (kharif, 2018; summer, 2019; kharif, 2019; summer, 2020) using 30 morphological and yield traits coupled with 164 simple sequence repeat (SSR) markers. Principal factor analysis identified eight components explaining >73 % of phenotypic variation, with yield-related traits loading strongly on PF3 in summer and PF2 in kharif and pooled analyses. Yellow mosaic disease (YMD) exhibited a consistent negative association with yield. Hierarchical cluster analysis (HCA) grouped genotypes into ten morphological clusters, whereas SSR-based unweighted neighbor-joining analysis revealed three major molecular clusters, with limited correspondence between phenotypic and molecular groupings. Average estimates of heritability and Fst were >60 % and 0.071. Population structure analyses showed similar groupings, indicating a shared ancestry among advanced genotypes, with SP1–SP3 pure and SP4 admixture. Genotypes MH 421, MH 318, MH 1314, IPM 409–4, and IPM 205–7 emerged as high-yielding and early-maturing across environments with stress-resilience. Also, this study novelly pinpoint divergent parents for heterosis and resilient cultivar breeding. Integration of multi-environment phenotyping and molecular profiling provided a robust framework for selecting genetically divergent parents to maximize heterosis and accelerate mungbean improvement. Future genomic-assisted and multi-omics approaches can exploit the identified diversity to develop high-yielding, climate-resilient, and nutritionally enhanced cultivars in legumes.
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