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Genetic diversity and genetic structure of local pear cultivars in Xinjiang based on SNP markers 基于SNP标记的新疆地方梨栽培品种的遗传多样性和遗传结构
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-06 DOI: 10.1016/j.sajb.2024.10.025
Qingrui Bi , Dongsheng Cui , Guoquan Fan , Shikui Zhang , Shaopeng Wang , Yingying Niu , Shirong Zhao

Background

Xinjiang is rich in pear varieties, and the genetic relationships among some local cultivars are not clear, which leads to classification controversy. To improve the breeding efficiency of high-quality cultivars, the genetic diversity and genetic structure of these cultivars were accurately evaluated. In this study, single nucleotide polymorphism (SNP) marker technology was used to study the genetic diversity and genetic structure of some local pear cultivars in Xinjiang, aiming to provide reference information for genetic improvement and hybrid combination selection of pear cultivars.

Results

In this study, 8,895,117 high-quality SNP loci were successfully developed and used for genetic diversity analysis. The results showed that the genetic differentiation among Xinjiang local pears was low, but nucleotide diversity was high with an average π value of 0. 0043. The tested cultivars were divided into five subgroups for genetic structure analysis. During the period of 4 to 7 million years, the number of pear populations was the largest, and pears developed rapidly during this period.

Conclusions

The genetic background of Xinjiang local pear cultivars is complex, the polymorphism is low, and the degree of uncertainty is high. The results of this study help to objectively evaluate excellent germplasm resources, effectively improve breeding efficiency, and help researchers set more scientific breeding goals.
背景新疆梨品种丰富,部分地方栽培品种之间的遗传关系不明确,导致分类争议。为了提高优质品种的育种效率,需要准确评价这些品种的遗传多样性和遗传结构。本研究利用单核苷酸多态性(SNP)标记技术研究了新疆部分地方梨栽培品种的遗传多样性和遗传结构,旨在为梨栽培品种的遗传改良和杂交组合选择提供参考信息。结果表明,新疆本地梨的遗传分化程度较低,但核苷酸多样性较高,平均π值为 0.受试品种被分为五个亚组进行遗传结构分析。结论 新疆地方梨品种的遗传背景复杂,多态性低,不确定性高。本研究结果有助于客观评价优良种质资源,有效提高育种效率,帮助科研人员制定更加科学的育种目标。
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引用次数: 0
Three Mediterranean species from natural plant communities (Ceratonia siliqua, Pistacia lentiscus, and Olea europaea var. sylvestris): phenolic acids, flavonoids, and biological activities 自然植物群落中的三种地中海物种(Ceratonia siliqua、Pistacia lentiscus 和 Olea europaea var.
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-06 DOI: 10.1016/j.sajb.2024.10.056
Ikbel Kayel , Badiaa Essghaier , Mohamed Ali Benabderrahim , Rocío Rodríguez-Arcos , Ana Jiménez-Araujo , Rafael Guillén-Bejarano , Hédia Hannachi
This study focuses on the phytochemical analysis of the leaves of three Mediterranean species from natural community native to Tunisia. A separated and a mixed leaves extracts were prepared using three species (Ceratonia siliqua L. (C), Pistacia lentiscus L. (L) and Olea europaea L. var. sylvestris or oleaster (O)). Four leaves hydroethanolic extracts including C, L, O and mixed extract coded MCLO (1/3, 1/3, 1/3) were used. The total polyphenols, flavonoids and condensed tannins were determined by colorimetric method. The identification of phenolic profile was performed HPLC-DAD/MS analysis. The antioxidant activity was evaluated by two tests and the antimicrobial activity was done against some clinical microbial pathogens. Results showed that the mixture MCLO extract gave the highest free radical-scavenging activity (IC50 = 0.057 g/mL) and showed an amount of 35.347 mg GAE /g DM of total polyphenols content. As well, the MCLO exhibited significant antibacterial and antifungal activities against the tested pathogen strains except of Candida albicans. Likewise, the MCLO possesses lysozyme activity against Staphylococcus aureus (282.66 AU/mL/min) and showed the highest percentage of inhibition on biofilm formation (97.28%). A total of 14, 11 and 8 phenolic compounds were identified in C, L and O extracts, respectively. Though, in the mixture MCLO extract, 21 phenolic compounds were identified. The high biological activities found with the mixture extract could be related to the three distinguished phenolics acids; trigalloyl-glc (261.10 µg/mL), trigalloylquinic acid (254.68 µg/mL), and digalloyl-glc (225.21 µg/mL). These finding highlights the improvement of the biological activities of carob, lentisk and oleaster using mixed leaves extracts.
本研究的重点是对原产于突尼斯自然群落的三种地中海物种的叶子进行植物化学分析。使用三个物种(Ceratonia siliqua L.(C)、Pistacia lentiscus L.(L)和 Olea europaea L. var.使用了四种叶片水乙醇提取物,包括 C、L、O 和混合提取物(代号 MCLO(1/3、1/3、1/3))。采用比色法测定总多酚、黄酮类化合物和缩合单宁。酚类物质的鉴定采用 HPLC-DAD/MS 分析法。抗氧化活性通过两项测试进行评估,抗菌活性则针对一些临床微生物病原体。结果显示,混合 MCLO 提取物的自由基清除活性最高(IC50 = 0.057 g/mL),多酚总含量为 35.347 mg GAE /g DM。此外,除白色念珠菌外,MCLO 对测试的病原体菌株具有显著的抗菌和抗真菌活性。同样,MCLO 对金黄色葡萄球菌具有溶菌酶活性(282.66 AU/mL/min),对生物膜形成的抑制率最高(97.28%)。在 C、L 和 O 提取物中分别鉴定出了 14、11 和 8 种酚类化合物。而在 MCLO 混合提取物中,则发现了 21 种酚类化合物。在混合提取物中发现的高生物活性可能与三种不同的酚酸有关:三甲氧基-glc(261.10 微克/毫升)、三甲氧基奎宁酸(254.68 微克/毫升)和二甲氧基-glc(225.21 微克/毫升)。这些发现突出表明,使用混合叶提取物可以提高角豆树、扁桃树和油松的生物活性。
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引用次数: 0
Antibacterial activity and synergistic interaction between Artemisia roxburghiana Wall. ex Besser extracts and synthetic antibiotics against resistant clinical isolates 罗布麻蒿(Artemisia roxburghiana Wall.
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-04 DOI: 10.1016/j.sajb.2024.10.035
Syeda Masooma Ali, Sara-Tun-Nisa, Humaira Fatima, Ihsan-ul-Haq
Antimicrobial resistance has imposed a huge challenge by complicating the treatment with existing antibiotics, so searching for novel sources to combat antibacterial resistance is crucial. Therefore, the current study was designed to explore Artemisia roxburghiana Wall. ex Besser as a possible solution to reform antimicrobial resistance. Leaf and stem n-hexane (nH), ethyl acetate (EA), methanol (M), and distilled water (DW) extracts were prepared by successive solvent extraction using ultrasonication-assisted maceration. Chromogenic assays estimated phenolic and flavonoid content along with antioxidant capacitance. Therapeutically significant polyphenols were quantified by reverse-phase high-pressure liquid chromatography (RP-HPLC). Preliminary resistance screening of antibiotics and antibacterial activity of the extracts was executed by disc diffusion and microbroth dilution methods. The checkerboard method, time-kill kinetics, and protein content determination validated the synergistic activity of extracts. Results showed maximum percentage yield in stem DW extract (7.705 %), and highest phenolic and flavonoid content in leaf EA extract with values of 67.47 ± 1.39 and 64.68 ± 1.09 μg gallic acid and quercetin equivalent/ mg extract respectively. Stem DW and M showed the highest antioxidant power and reducing potential with values of 129.34 ± 1.49 and 135.25 ± 0.02 μg ascorbic acid equivalent/ mg extract respectively. Noteworthy quantities of syringic acid (0.539 ± 0.035–16.557±0.38 µg/mg), plumbogen (11.330 ± 0.12 µg/mg) and emodin (0.103 ± 0.002–1.373 ± 0.023 µg/mg) were assessed in extracts through RP-HPLC. Primary profiling of antibiotics revealed resistance of pathogens towards cefixime. Synergistic studies showed total and partial synergy between extracts and clinical isolates. Moreover, a potentiation in the susceptibility of cefixime (2-8-fold reduction in concentration) was observed in time-kill kinetic studies. There was a significant decline in bacterial growth and protein content when treated in combinations at fractional inhibitory concentration index (FICI) compared to cefixime/extracts alone treated isolates. This research has appraised A. roxburghiana as a potential novel candidate for combating bacterial resistance.
抗菌药耐药性是一个巨大的挑战,它使现有抗生素的治疗变得复杂,因此寻找新的抗菌药来源至关重要。因此,本研究旨在探索一种可能解决抗菌药耐药性问题的方法--罗布麻蒿(Artemisia roxburghiana Wall.使用超声辅助浸渍法通过连续溶剂萃取制备了叶和茎正己烷(nH)、乙酸乙酯(EA)、甲醇(M)和蒸馏水(DW)提取物。色原测定估计了酚类和类黄酮的含量以及抗氧化能力。通过反相高压液相色谱法(RP-HPLC)对具有治疗意义的多酚进行了定量。抗生素耐药性和提取物抗菌活性的初步筛选是通过盘扩散和微流稀释法进行的。棋盘格法、时间杀伤动力学和蛋白质含量测定验证了提取物的协同活性。结果表明,茎 DW 提取物的产量百分比最高(7.705%),叶 EA 提取物的酚和类黄酮含量最高,分别为 67.47 ± 1.39 和 64.68 ± 1.09 μg 没食子酸和槲皮素当量/毫克提取物。茎干 DW 和 M 的抗氧化能力和还原潜力最高,分别为 129.34 ± 1.49 和 135.25 ± 0.02 μg 抗坏血酸当量/毫克提取物。通过 RP-HPLC 法,评估了提取物中值得注意的丁香酸(0.539 ± 0.035-16.557±0.38 μg/mg)、苦参碱(11.330 ± 0.12 μg/mg)和大黄素(0.103 ± 0.002-1.373 ± 0.023 μg/mg)的含量。抗生素的初级分析表明病原体对头孢克肟具有抗药性。协同作用研究表明,提取物与临床分离物之间存在完全和部分协同作用。此外,在时间杀灭动力学研究中观察到头孢克肟的药敏性增强(浓度降低 2 至 8 倍)。与头孢克肟/提取物单独处理分离物相比,在分数抑制浓度指数(FICI)下进行组合处理时,细菌的生长和蛋白质含量都有明显下降。这项研究认为 A. roxburghiana 是一种潜在的抗细菌耐药性新候选药物。
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引用次数: 0
Flora and biological spectrum of a savanna enclave within the semiarid Caatinga Dominion in Ceará state, Northeastern Brazil 巴西东北部塞阿拉州半干旱卡廷加领地内一块稀树草原飞地的植物区系和生物谱系
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-04 DOI: 10.1016/j.sajb.2024.10.033
Brenda Luana Muniz Gonçalves , Gabriel Venâncio Cruz , Maria Amanda Nobre Lisboa , Leonardo Vitor Alves da Silva , Maria Girlene dos Santos Queiroz , Alana de Oliveira Silva , Maria Rayssa Alves Teixeira , Maria Arlene Pessoa da Silva , Valéria da Silva Sampaio , Leonardo Silvestre Gomes Rocha , João Tavares Calixto Júnior
Inside the Brazilian semiarid region (Caatinga Dominion), there are enclaves of vegetation from another bioma (Cerrado) that appear as scattered patches, mainly present on the tops of plateaus and in areas locally called "tabuleiros". Aiming for a better understanding of the floristic composition to support conservation strategies, a survey of the vascular flora and an analysis of the biological spectrum were conducted in the Serra do Boqueirão (southern state of Ceará, Brazilian Northeastern), an area of significant ecological and regional landscape value. Monthly botanical collections were carried out over 23 months in two distinct areas (with and without rocky outcrops – PAR and AAR), and soil samples were also collected for analysis. Species were classified in the Raunkiaer's life forms, modified according to Braun-Blanquet. The chi-square test and a detrended correspondence analysis (DCA) were performed to compare the areas, along with a similarity test to observe comparisons with other savanna areas in the Caatinga and core areas in Brazil. One hundred and seven species were identified in 92 genera and 40 families. Fabaceae (24 spp.), Malvaceae (8 spp.), and Rubiaceae (6 spp.) were the richest families. The biological spectrum showed a predominance of phanerophytes (52.3 %) and therophytes (25.2 %), forms characteristic of the tree-shrub physiognomy with annual herbs. Statistical analysis indicated that the biological spectrum differs from Raunkiaer's normal, as well as the two areas differ from each other (χ2 = 25.87, p < 0.0001). A high concentration of aluminum was observed in the area with the presence of species characteristic of the Cerrado s.s. such as Curatella americana and Qualea parviflora, and the similarity test indicated greater resemblance to Caatinga areas geographically closer to the study area. These results highlight the presence of a savanna vegetation enclave with a strong penetration of surrounding Caatinga species, emphasizing the role of historical and environmental factors of the vegetation in the area and indicating the need for conservation strategies.
在巴西半干旱地区(Caatinga Dominion),有来自另一个生物群落(Cerrado)的植被飞地,这些飞地以零星斑块的形式出现,主要分布在高原顶部和当地称为 "tabuleiros "的地区。为了更好地了解植物组成以支持保护战略,我们在具有重要生态和区域景观价值的 Serra do Boqueirão(巴西东北部塞阿拉州南部)进行了维管植物区系调查和生物谱分析。在 23 个月的时间里,每月在两个不同的区域(有岩石露头和无岩石露头--PAR 和 AAR)进行植物采集,并采集土壤样本进行分析。物种按照 Raunkiaer 的生命形式进行分类,并根据 Braun-Blanquet 进行了修改。对这些地区进行了卡方检验(chi-square test)和去趋势对应分析(DCA),并进行了相似性检验,以观察与卡廷加其他热带稀树草原地区和巴西核心地区的比较。共鉴定出 92 属 40 科 177 种植物。豆科(24 种)、锦葵科(8 种)和茜草科(6 种)是物种最丰富的科。生物谱显示,主要是扇叶植物(52.3%)和食叶植物(25.2%),它们是一年生草本植物的乔灌木形态特征。统计分析表明,生物谱与 Raunkiaer 的正常值不同,两个地区之间也存在差异(χ2 = 25.87,p < 0.0001)。铝浓度较高的地区有 Cerrado s.s.的特征物种,如 Curatella americana 和 Qualea parviflora。这些结果凸显了热带稀树草原植被飞地的存在,其周围的 Caatinga 物种具有很强的渗透性,强调了该地区植被的历史和环境因素的作用,并表明需要采取保护战略。
{"title":"Flora and biological spectrum of a savanna enclave within the semiarid Caatinga Dominion in Ceará state, Northeastern Brazil","authors":"Brenda Luana Muniz Gonçalves ,&nbsp;Gabriel Venâncio Cruz ,&nbsp;Maria Amanda Nobre Lisboa ,&nbsp;Leonardo Vitor Alves da Silva ,&nbsp;Maria Girlene dos Santos Queiroz ,&nbsp;Alana de Oliveira Silva ,&nbsp;Maria Rayssa Alves Teixeira ,&nbsp;Maria Arlene Pessoa da Silva ,&nbsp;Valéria da Silva Sampaio ,&nbsp;Leonardo Silvestre Gomes Rocha ,&nbsp;João Tavares Calixto Júnior","doi":"10.1016/j.sajb.2024.10.033","DOIUrl":"10.1016/j.sajb.2024.10.033","url":null,"abstract":"<div><div>Inside the Brazilian semiarid region (Caatinga Dominion), there are enclaves of vegetation from another bioma (Cerrado) that appear as scattered patches, mainly present on the tops of plateaus and in areas locally called \"tabuleiros\". Aiming for a better understanding of the floristic composition to support conservation strategies, a survey of the vascular flora and an analysis of the biological spectrum were conducted in the Serra do Boqueirão (southern state of Ceará, Brazilian Northeastern), an area of significant ecological and regional landscape value. Monthly botanical collections were carried out over 23 months in two distinct areas (with and without rocky outcrops – PAR and AAR), and soil samples were also collected for analysis. Species were classified in the Raunkiaer's life forms, modified according to Braun-Blanquet. The chi-square test and a detrended correspondence analysis (DCA) were performed to compare the areas, along with a similarity test to observe comparisons with other savanna areas in the Caatinga and core areas in Brazil. One hundred and seven species were identified in 92 genera and 40 families. Fabaceae (24 spp.), Malvaceae (8 spp.), and Rubiaceae (6 spp.) were the richest families. The biological spectrum showed a predominance of phanerophytes (52.3 %) and therophytes (25.2 %), forms characteristic of the tree-shrub physiognomy with annual herbs. Statistical analysis indicated that the biological spectrum differs from Raunkiaer's normal, as well as the two areas differ from each other (χ2 = 25.87, <em>p</em> &lt; 0.0001). A high concentration of aluminum was observed in the area with the presence of species characteristic of the Cerrado s.s. such as <em>Curatella americana</em> and <em>Qualea parviflora</em>, and the similarity test indicated greater resemblance to Caatinga areas geographically closer to the study area. These results highlight the presence of a savanna vegetation enclave with a strong penetration of surrounding Caatinga species, emphasizing the role of historical and environmental factors of the vegetation in the area and indicating the need for conservation strategies.</div></div>","PeriodicalId":21919,"journal":{"name":"South African Journal of Botany","volume":null,"pages":null},"PeriodicalIF":2.7,"publicationDate":"2024-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142578397","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diabetic foot ulcer healing potential of Tagetes erecta L. flower extract on successive administration in alloxan-induced diabetic rats via modulation of liver functions 万寿菊花提取物通过调节肝功能对阿脲诱导的糖尿病大鼠连续给药后的糖尿病足溃疡愈合潜力
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-04 DOI: 10.1016/j.sajb.2024.10.051
Naveen Singh , Anjna Sharma , Vivek Sharma , Ravinesh Mishra , Nitin Verma
Diabetes mellitus is a prevalent endocrine disorder characterized by inadequate insulin production by the pancreas or improper utilization of insulin by the body, which imposes severe health complications, including cardiovascular, kidney, and neurological disorders with a high potential of foot ulcers. Globally, diabetes is responsible for over 70 % of limb amputations. Alloxan was used to induce diabetes in rats while foot ulcers were induced by the excision method in diabetic rats. Diabetes was confirmed by measuring the parameters like blood glucose, body weight changes, urine excretion, and other biomarker levels after oral administration of Tagetes erecta L. flower extract (TEFE) at different doses. During the work, it was observed that TEFE demonstrated a dose-dependent effect on blood sugar level from 370.2 mg/dl to 113.00 mg/dl and healing of diabetic foot ulcers in a 13 days animal model (p < 0.01). There is significant decline in SGOT, SPGT and ALP levels when compared with diseased group animals. Decrease in wound size was observed when TEFE was administered to diabetic foot ulcer rats. These exciting results steered to enumerate the possible role of TEFE in Diabetes mellitus through a panel of mechanisms of action like inhibition of free radical generation, modulation of liver enzymes and metabolism of glucose etc. The above findings support the hypoglycaemic and diabetic foot ulcer healing potential of TEFE. Moreover, further investigation is required to completely understand the possible mechanism of TEFE.
糖尿病是一种常见的内分泌疾病,其特点是胰腺分泌的胰岛素不足或机体对胰岛素的利用不当,从而引发严重的健康并发症,包括心血管、肾脏和神经系统疾病,并极易导致足部溃疡。在全球范围内,超过 70% 的截肢是由糖尿病引起的。我们用阿脲诱导大鼠患上糖尿病,同时用切除法诱导糖尿病大鼠出现足部溃疡。在口服不同剂量的直立万寿菊花提取物(TEFE)后,通过测量血糖、体重变化、尿液排泄和其他生物标志物水平等参数来确认糖尿病。在研究过程中观察到,在一个为期 13 天的动物模型中,TEFE 对血糖水平从 370.2 毫克/分升降至 113.00 毫克/分升以及糖尿病足溃疡的愈合具有剂量依赖性影响(p < 0.01)。与患病组动物相比,SGOT、SPGT 和 ALP 水平明显下降。给糖尿病足溃疡大鼠注射 TEFE 后,观察到伤口面积缩小。这些令人兴奋的结果表明,TEFE 可通过一系列作用机制,如抑制自由基生成、调节肝酶和葡萄糖代谢等,对糖尿病发挥可能的作用。上述研究结果支持 TEFE 的降血糖和糖尿病足溃疡愈合潜力。此外,要完全了解 TEFE 的可能机制,还需要进一步的研究。
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引用次数: 0
Drought-induced mortality of an endemic leaf succulent, Argyroderma delaetii, in a South African biodiversity hotspot 干旱导致南非生物多样性热点地区特有的肉质叶植物 Argyroderma delaetii 死亡
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-02 DOI: 10.1016/j.sajb.2024.10.046
Kerry-Anne Grey , Natasha L. Atkinson
The biodiversity of the Knersvlakte, located in the Succulent Karoo biodiversity hotspot of South Africa, is predicted to experience an increase in severe drought events during this century. This region harbours a high diversity of endemic leaf succulents and it is unclear whether these will be resistant or vulnerable to drought as experimental and observational studies for this are few and contradictory. This study quantifies the effect of a recent drought in the Knersvlakte on the survival of juvenile and reproductively mature individuals of a quartz plain-adapted leaf succulent, Argyroderma delaetii. The progression of the drought and an experimental watering treatment was quantified using a Standard Precipitation Index from May 2017 to May 2018. The effect of the drought and the watering treatment on the survival of A. delaetii was determined by monitoring individuals using repeat photography for one year. The mortality of individuals in each treatment and life stage was derived from the photographs and a comparative survival analysis was used to quantify the threat posed by the drought conditions. The results indicate that the Knersvlakte experienced severe drying during the 2017 drought in relation to historical records and a median rainfall year. This decreased A. delaetii survival probability three-fold when compared to mortality in a median rainfall year. Mortality was likely driven by an interplay between carbon starvation and hydraulic failure in the leaf succulent due to leaf water reserves not being replenished by the reliable winter rains of the Succulent Karoo, to which this species is adapted. The larger, reproductively mature individuals were more resistant to drought-induced mortality than the smaller juveniles, likely because the mature individuals are significantly larger than juveniles with higher water storage capacity and reduced risk of passing critical osmotic thresholds, allowing for maintained photosynthesis through the drought.
据预测,位于南非多汁卡鲁生物多样性热点地区的 Knersvlakte 的生物多样性在本世纪将经历更严重的干旱事件。该地区特有的多肉叶类植物种类繁多,目前还不清楚这些植物是抗旱还是易旱,因为这方面的实验和观察研究很少,而且相互矛盾。本研究量化了最近在克纳斯湖(Knersvlakte)发生的干旱对适应石英平原的叶肉植物 Argyroderma delaetii 的幼苗和繁殖成熟个体存活率的影响。从2017年5月到2018年5月,干旱和试验性浇水处理的进展情况使用标准降水指数进行了量化。干旱和浇水处理对 A. delaetii 存活率的影响是通过使用重复摄影监测个体一年来确定的。从照片中得出每个处理和生命阶段中个体的死亡率,并使用生存率比较分析来量化干旱条件造成的威胁。结果表明,与历史记录和降雨量中位数年份相比,2017 年干旱期间 Knersvlakte 经历了严重的干旱。与降雨量中位数年份的死亡率相比,这使A. delaetii的存活概率降低了三倍。死亡的原因可能是碳饥饿和叶肉植物水力衰竭之间的相互作用,因为叶片的水分储备没有得到该物种所适应的多汁卡鲁可靠冬雨的补充。体型较大、繁殖成熟的个体比体型较小的幼体更能抵御干旱引起的死亡,这可能是因为成熟个体比幼体大得多,储水能力更强,通过临界渗透阈值的风险也更小,从而可以在干旱期间保持光合作用。
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引用次数: 0
Comprehensive analysis of the oligopeptide transporter gene family in maize: Genome-wide identification, structural characterization, and stress-responsive expression 玉米寡肽转运体基因家族的全面分析:全基因组鉴定、结构特征和胁迫响应表达
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-02 DOI: 10.1016/j.sajb.2024.10.004
Md.Golam Rabby , Fang Li , Tao Yang , Md.Sohel Mia , Rui Li , Zhangtao Zhang , Chao Xia , Md.Ashrafuzzaman Zahid , Md.Mahmudul Hasan
Oligopeptide transporter (OPT) proteins are integral proteins in cell membranes that perform a crucial role in cellular metal homeostasis, mineral uptake, transport of small peptides and abiotic stress tolerance. Hence, in-depth evolutionary, structural, molecular and expression analysis could guide in exploring the mechanism of how these transporters contribute to nutrient balance and abiotic stress tolerance in maize. Following a series of bioinformatic analyses, eight OPTs in maize were identified. These transporters showed significant variations in molecular weight, and have one to five introns, 11 to 15 motifs, 11 to 18 transmembrane domains, multiple beta-strands, multiple alpha and transmembrane helices. ZmOPT1, 5, and 6 are plasma membranes and the rest are endoplasmic reticulum localized. All ZmOPTs are distributed in six different chromosomes having significant phytohormone-responsive cis-elements might be due to their great roles in hormonal regulation in maize. The significant transport activity of these transporters plays a great role in biological processes, cellular components and molecular functions in maize during gene ontology analysis. Co-expression of five genes among eight OPTs with 56 genes might be due to their great role in regulating other genes in multiple signaling pathways or vice-versa. Significant tissue-specific and drought, salinity, nitrogen starvation, and heat stress induced in silico expression following real time PCR validation of ZmOPT1, 7, and 8 genes might guide to elucidate the potential roles of these transporters in specific tissues and abiotic stress tolerance. Hence, the findings of the research might guide plant biologists to develop new varieties of maize having higher efficiency of peptide and metal ion transport, balance, and abiotic stress tolerance. Findings of these structural and expression analyzes might guide the plant biologist for single transgenesis, or developing and transforming programming-based synthetic genetic circuits in maize for advancing research in peptide transport, metal hemostasis, and increasing abiotic stress tolerance in maize.
寡肽转运体(OPT)蛋白是细胞膜上不可或缺的蛋白质,在细胞金属平衡、矿物质吸收、小肽转运和非生物胁迫耐受性方面发挥着至关重要的作用。因此,深入的进化、结构、分子和表达分析有助于探索这些转运蛋白如何促进玉米的营养平衡和非生物胁迫耐受性。经过一系列生物信息学分析,确定了玉米中的 8 个 OPTs。这些转运体的分子量有显著差异,具有 1 至 5 个内含子、11 至 15 个基序、11 至 18 个跨膜结构域、多个 beta 链、多个 alpha 和跨膜螺旋。ZmOPT1、5 和 6 位于质膜,其余则位于内质网。所有 ZmOPTs 都分布在六条不同的染色体上,具有重要的植物激素反应顺式元件,这可能是因为它们在玉米激素调节中发挥了重要作用。在基因本体分析中,这些转运体的重要转运活性在玉米的生物过程、细胞组分和分子功能中发挥了重要作用。8 个 OPTs 中有 5 个基因与 56 个基因共表达,这可能是由于它们在多种信号通路中对其他基因起着重要的调控作用,反之亦然。对 ZmOPT1、7 和 8 基因进行实时 PCR 验证后发现,这些转运体在特定组织和非生物胁迫耐受性中具有显著的组织特异性和干旱、盐度、氮饥饿和热胁迫诱导的硅表达,这可能有助于阐明这些转运体在特定组织和非生物胁迫耐受性中的潜在作用。因此,研究结果可能会指导植物生物学家开发出具有更高的肽和金属离子转运效率、平衡和非生物胁迫耐受性的玉米新品种。这些结构和表达分析结果可能会指导植物生物学家进行单一转基因,或开发和改造基于编程的玉米合成遗传线路,以推进玉米多肽转运、金属止血和提高非生物胁迫耐受性方面的研究。
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引用次数: 0
A comprehensive review on ethno-pharmacological and phytochemical properties of selected species of genus Ophioglossum 关于 Ophioglossum 属部分物种的民族药理学和植物化学特性的全面综述
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-02 DOI: 10.1016/j.sajb.2024.10.040
Abdul Manan Yousaf , Sehrish Imran , Yamin Bibi , Muhammad Hasnain , Muhammad Imran Yousaf , Abdul Qayyum
There are roughly 100 species of Ophioglossum, Helminthostachys, Cheiroglossa, and Botrychium in the family Ophioglossaceae, which consists of these four genera. Due to the numerous therapeutic benefits of the phytochemical compositions found in Ophioglossum species, these plants are frequently utilized to cure a variety of ailments. This review includes a thorough analysis of the Ethnomedicines, phytochemistry, and pharmacological uses of the genus Ophioglossum, a member of the Ophioglossaceae family that includes 45–50 recognized species and is well known for its wide range of traditional uses, including food, folk medicine, wound healing, menstrual disorders, tissue repair properties, skin ulcers, anti-wrinkling, epistaxis, aphrodisiac, eye blepharitis. A thorough literature search from this study was conducted using several web searches as well as online records, including PubMed, Web of Science, Scopus, and Google Scholar etc. This genus demonstrates distinct benefits in both medicine and food. Ophioglossum species have been found to contain bioactive substances like flavonoids, homoflavonoids, flavonols, rhamnopyranoside, kaempferol total phenolics, proxy fatty acids, thermalic acids, ophioglonol, glucopyranoside, and pedunculosumosides that are responsible for the spectacular biological activities that have been observed in them including antioxidant, antimicrobial, anti-inflammatory, anti-HBV activity, wound healing, Insecticidal property, Alopecia treatment antidiarrheal and spasmolytic effect. This review discusses the significance of various Ophioglossum species in terms of their traditional medicinal applications, phytochemical makeup, and prospective pharmacological activities. In terms of pharmacology, this genus is less studied than other ferns because some of its species are rare. Therefore, more research should concentrate on the preservation, cultivation, and sustainable use of Ophioglossum species. Additionally, there is a humungous need to investigate this genus' biological activities.
由这四个属组成的 Ophioglossaceae 科中大约有 100 种 Ophioglossum、Helminthostachys、Cheiroglossa 和 Botrychium。由于 Ophioglossum 植物中的植物化学成分具有多种治疗功效,这些植物经常被用来治疗各种疾病。本综述全面分析了 Ophioglossum 属的民族医药、植物化学和药理用途。Ophioglossum 属属于 Ophioglossaceae(鹅掌楸科),包括 45-50 个公认的物种,以其广泛的传统用途而闻名,包括食品、民间医药、伤口愈合、月经紊乱、组织修复特性、皮肤溃疡、抗皱、鼻衄、壮阳、眼睑炎等。本研究使用多种网络搜索和在线记录进行了全面的文献检索,包括 PubMed、Web of Science、Scopus 和 Google Scholar 等。该属植物在医药和食品方面都具有独特的功效。已发现 Ophioglossum 种类含有生物活性物质,如黄酮类、同黄酮类、黄酮醇、鼠李糖苷、山柰酚总酚类、代脂肪酸、热酸、ophioglonol、葡萄糖苷、这些成分具有惊人的生物活性,包括抗氧化、抗菌、消炎、抗乙肝病毒、伤口愈合、杀虫、治疗脱发、止泻和解痉作用。本综述讨论了各种 Ophioglossum 物种在传统药用、植物化学成分和未来药理活性方面的意义。在药理学方面,该属植物的研究少于其他蕨类植物,因为其中一些物种比较罕见。因此,更多的研究应集中在 Ophioglossum 物种的保存、栽培和可持续利用方面。此外,还亟需对该属植物的生物活性进行研究。
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引用次数: 0
Extracts of Southern African aquatic and wetland plant species as effective tyrosinase inhibitors 作为有效酪氨酸酶抑制剂的南部非洲水生和湿地植物物种提取物
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-02 DOI: 10.1016/j.sajb.2024.10.041
Namrita Lall , Karina Mariam Szuman , Bonani Madikizela , Anna-Mari Kok , Marco Nuno De Canha
South Africa harvests approximately 19 500 tonnes of medicinal plants annually for the treatment of various ailments and an additional 6000 tonnes is exported globally for the development and design of cosmetic and medicinal products. South Africa is home to 30 freshwater and marine ecological regions, however, medicinal plant species from these semi-aquatic and aquatic habitats are largely understudied in comparison to other biomes. The lack of knowledge and reported pharmacological activity of these species may be hindering the potential contribution to the herbal medicine and personal care markets. South Africa is Africa's largest market for cosmetic and personal care products and in 2018 this sector reported 3.2 billion US dollars in revenue. Eighteen (18) Southern African freshwater aquatic and wetland plant species were selected and screened for their potential as cosmeceutical ingredients by investigating their antibacterial, anti-tyrosinase and cytotoxicity. The extracts of Erythrina zeyheri and Plantago longissima exhibited antimycobaterial activity with MIC values of 125 µg/mL. Two extracts of the genus Cyperus, C. marginatus and C. sexangularis showed tyrosinase inhibition with IC50 values of 75.03 and 64.26 µg/mL, respectively. Carex rhodesiaca and Gunnera perpensa both exhibited dual antimicrobial activity against Cutibacterium acnes with MIC values of 250 and 125 µg/mL, respectively and anti-tyrosinase activity with IC50 values of 64.71 and 70.43 µg/mL. Persicaria senegalensis exhibited anti-tyrosinase activity with an IC50 of 71.59 µg/mL. Fractionation of P. senegalensis yielded F14 with an IC50 of 68.77 µg/mL against tyrosinase enzyme activity. Purification of F3 yielded (24S)-Stigmast-5,22(E)-dien-3-β-ol which is the first report of this compound from this species. This study provides scientific validation of the traditional use of the selected species and provides proof of concept for further investigations of these extracts as potential active ingredients in the personal care sector.
南非每年收获约 19500 吨药用植物,用于治疗各种疾病,另有 6000 吨出口到全球,用于化妆品和药用产品的开发和设计。南非拥有 30 个淡水和海洋生态区,但与其他生物群落相比,这些半水生和水生栖息地的药用植物物种在很大程度上未得到充分研究。对这些物种的了解和药理活性报告的缺乏可能会阻碍其对草药和个人护理市场的潜在贡献。南非是非洲最大的化妆品和个人护理产品市场,2018 年该行业收入达 32 亿美元。研究人员选择了十八(18)种南部非洲淡水水生和湿地植物,通过研究其抗菌、抗酪氨酸酶和细胞毒性,筛选出其作为药妆成分的潜力。Erythrina zeyheri 和 Plantago longissima 的提取物具有抗霉菌活性,其 MIC 值为 125 µg/mL。C. marginatus 和 C. sexangularis 的两种提取物对酪氨酸酶有抑制作用,IC50 值分别为 75.03 和 64.26 µg/mL。Carex rhodesiaca 和 Gunnera perpensa 对痤疮丙酸杆菌具有双重抗菌活性,其 MIC 值分别为 250 微克/毫升和 125 微克/毫升,抗酪氨酸酶活性的 IC50 值分别为 64.71 微克/毫升和 70.43 微克/毫升。塞内加尔柿具有抗酪氨酸酶活性,其 IC50 值为 71.59 µg/mL。对 P. senegalensis 进行分馏后得到 F14,其抗酪氨酸酶活性的 IC50 值为 68.77 µg/mL。纯化 F3 得到了(24S)-Stigmast-5,22(E)-dien-3-β-ol,这是该物种首次报道这种化合物。这项研究从科学角度验证了所选物种的传统用途,并为进一步研究这些提取物作为个人护理领域潜在活性成分的概念提供了证明。
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引用次数: 0
Retraction notice: Proteomic modulation by arsenic and microplastic toxicity in the presence of iron oxide nanoparticles in wheat (Triticum aestivum L.) seedlings 撤稿通知:小麦幼苗在氧化铁纳米颗粒存在下的砷和微塑料毒性的蛋白质组调控
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-01 DOI: 10.1016/j.sajb.2024.08.038
Rana M. Alshegaihi , Aishah Alatawi , Maryam M. Alomran , Fatma Mohamed Ameen Khalil , Ammara Saleem
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引用次数: 0
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South African Journal of Botany
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