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Changes in plant hormones and transcriptome behind the three pistils formation in wheat 小麦三雌蕊形成背后植物激素和转录组的变化
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-21 DOI: 10.1016/j.sajb.2024.10.034
Tao Li , Yichao Wu , Ruiyang Lan , Mingli Liao , Zhenyong Chen , Shuhong Wei , Zhengsong Peng , Zaijun Yang
Auxin and gibberellin significantly influence plant pistil development, but their specific roles in the formation of the three pistils trait in wheat are still unclear. To investigate the effects of auxin and gibberellin on the three pistils trait in wheat, we measured the contents of auxin and gibberellin in young spikes from three pistils wheat (TP and CM28TP) and single pistil wheat (CM28) at three stages. We also performed transcriptome sequencing. A total of 14 different auxins and 7 different gibberellins were detected from all samples, among which the contents of IAA-Glc and GA19 showed significant differences among different samples. The transcriptome sequencing yielded over 1.28 billion clean reads and 3.2 million transcripts. A total of 2,018 and 6,163 differentially expressed genes (DEGs) were identified from the comparisons of CM28 vs CM28TP and CM28 vs TP, respectively. Through the correlation analysis between auxin, gibberellin, and DEGs, 4 ARF genes, 3 AMI genes, and 3 DELLA genes were identified. These results suggest that IAA-Glc, GA19, and the 10 key genes were crucial factors in the formation of three pistils trait. Further analysis showed that ARF expression level and GA contents were negatively correlated with three pistils trait, while DELLA expression level and auxin contents were positively correlated. This study suggests that auxin and gibberellin signal transduction have an antagonistic relationship during wheat flower development, influencing the formation of the three pistils. This discovery helps further understanding of the mechanism behind the formation of the three pistils trait and provides theoretical support for the cultivation of high-yield wheat.
辅助素和赤霉素对植物雌蕊的发育有显著影响,但它们在小麦三雌蕊性状形成过程中的具体作用尚不清楚。为了研究辅助素和赤霉素对小麦三雌蕊性状的影响,我们测定了三雌蕊小麦(TP 和 CM28TP)和单雌蕊小麦(CM28)三个阶段幼穗中辅助素和赤霉素的含量。我们还进行了转录组测序。所有样品中共检测到 14 种不同的辅助素和 7 种不同的赤霉素,其中 IAA-Glc 和 GA19 的含量在不同样品间存在显著差异。转录组测序获得了超过 12.8 亿个纯净读数和 320 万个转录本。通过比较 CM28 与 CM28TP 和 CM28 与 TP,分别发现了 2,018 和 6,163 个差异表达基因(DEGs)。通过对辅助素、赤霉素和 DEGs 之间的相关性分析,发现了 4 个 ARF 基因、3 个 AMI 基因和 3 个 DELLA 基因。这些结果表明,IAA-Glc、GA19 和 10 个关键基因是形成三雌蕊性状的关键因素。进一步分析表明,ARF表达水平和GA含量与三雌蕊性状呈负相关,而DELLA表达水平和辅素含量呈正相关。该研究表明,在小麦花的发育过程中,辅助素和赤霉素信号转导存在拮抗关系,影响了三雌蕊的形成。这一发现有助于进一步了解三雌蕊性状形成的机理,为小麦高产栽培提供理论支持。
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引用次数: 0
Sennosides A and B could contribute to the antimicrobial efficiency of Senna alexandrina Mill. against pathogenic bacteria in vitro and in vivo models 番泻苷 A 和 B 在体外和体内模型中有助于提高番泻叶对病原菌的抗菌效率
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-21 DOI: 10.1016/j.sajb.2024.10.029
Kumaraguru Gowtham , Govindhan Thiruppathi , Muthusamy Balasubramanian , Malaiyandi Jayanthi , Palanisamy Sundararaj , Shanmugam Girija
The search of new antimicrobial compounds is increasing in due with increasing bacterial infections. Discovering effective antibacterial medications is crucial for improving healthcare and combating bacterial infections. Senna alexandrina Mill. known as Tinnevelly senna, used as herbal extract in traditional medicine and found be rich in anthraquinone glycosides like sennoside A (SA) and sennoside B (SB), shows significant biological activity as a potential therapeutic agent. This study assessed the antibacterial effects of senna extracts on Gram-negative Pseudomonas aeruginosa and Gram-positive Staphylococcus aureus bacteria, both in vitro and in vivo. HPLC analysis identified sennosides as the major compounds in senna extracts, with the highest concentration found in the leaves, followed by the pods, flowers, stems, and roots. The leaf extract showed the highest sennoside content (SA 27.21 mg/g and SB 29.1 mg/g) compared to other plant parts. FT-IR analysis confirmed the presence of sennosides through the detection of carboxylic acids and OH functional groups in S. alexandrina extracts. Extracts rich in sennosides displayed potent in vitro antibacterial activity (1000 µg/mL) by generating ROS, penetrating and becoming disruptive to bacterial functions. Similarly, in Caenorhabditis elegans model, they inhibited bacterial growth and colonization and enhanced physiological functions in the worms. Senna extract (1000 µg/mL) improved intestinal barrier's structural stability in C. elegans by outcompeting pathogenic bacteria and prolonged survival rates of those infected with P. aeruginosa and S. aureus to 56.6 % and 62.4 %, respectively, confirming the potent antibacterial efficacy of senna leaf methanolic extracts due to their high sennoside content in both in vitro and in vivo models.
随着细菌感染的增加,对新型抗菌化合物的研究也在不断增加。发现有效的抗菌药物对于改善医疗保健和抗击细菌感染至关重要。番泻叶(Senna alexandrina Mill.)被称为 Tinnevelly 番泻叶,在传统医学中用作草药提取物,富含番泻苷 A(SA)和番泻苷 B(SB)等蒽醌苷类化合物,具有显著的生物活性,是一种潜在的治疗药物。本研究评估了番泻叶提取物在体外和体内对革兰氏阴性绿脓杆菌和革兰氏阳性金黄色葡萄球菌的抗菌作用。高效液相色谱分析确定番泻叶提取物中的主要化合物是番泻苷,其中叶的浓度最高,其次是豆荚、花、茎和根。与其他植物部分相比,叶提取物中的番泻苷含量最高(SA 27.21 mg/g,SB 29.1 mg/g)。傅立叶变换红外分析通过检测 S. alexandrina 提取物中的羧酸和羟基官能团证实了番泻苷的存在。富含番泻苷的萃取物通过产生 ROS、渗透并破坏细菌功能,显示出强大的体外抗菌活性(1000 µg/mL)。同样,在秀丽隐杆线虫模型中,它们抑制了细菌的生长和定植,并增强了蠕虫的生理功能。番泻叶提取物(1000 µg/mL)通过对抗致病菌,改善了秀丽隐杆线虫肠道屏障结构的稳定性,并将铜绿假单胞菌和金黄色葡萄球菌感染者的存活率分别延长至 56.6% 和 62.4%,这证实了番泻叶甲醇提取物在体外和体内模型中的高番泻苷含量具有强大的抗菌功效。
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引用次数: 0
Eucalyptus globulus essential oil as food preservative: Chemical composition, antimicrobial (in vitro and in situ), antibiofilm and insecticidal potential 作为食品防腐剂的蓝桉精油:化学成分、抗菌(体外和原位)、抗生物膜和杀虫潜力
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-19 DOI: 10.1016/j.sajb.2024.10.022
Miroslava Kačániová , Natália Čmiková , Nenad L. Vukovic , Zhaojun Ban , Alessandro Bianchi , Stefania Garzoli , Rania Ben Saad , Anis Ben Hsouna , Joel Horacio Elizondo-Luévano , Milena D. Vukic
The use of species within the Eucalyptus genus has been widespread in traditional medicine practices globally. However, concerns regarding safety and toxicity data have been prominent due to the extensive use of its essential oil, which is widely regarded for its medicinal properties and various applications. This research aimed to analyze the chemical makeup of Eucalyptus globulus essential oil (EGEO) and explore its antibacterial and insecticidal properties both in laboratory settings and real-life scenarios. Gas chromatography/mass spectrometry (GC/MS) was employed to identify the chemical constituents of EGEO, revealing 1,8-cineole (86.1 %), ο-Cymene (4.9 %), α-Pinene (3.8 %), γ-Terpinene (2.2 %), and α-Terpinene (1.6 %) as the primary components. The disc diffusion method demonstrated EGEOʼs strongest antimicrobial activity against Micrococcus luteus (p < 0.05), while minimal inhibition concentration tests indicated notable effectiveness against Streptococcus pneumoniae (MIC50 2.25 mg/mL and MIC90 2.79 mg/mL). In situ antibacterial assessments using white radish and pear food models showed heightened activity compared to contact application, particularly with the highest concentration (500 µg/L), yielding optimal results against Pseudomonas putida (p < 0.05). Additionally, the study investigated EGEO's antibiofilm properties against Salmonella enterica using mass spectrometry and the crystal violet method. In terms of insecticidal action, EGEO at 100 % concentration resulted in the mortality of 90 % of Harmonia axyridis individuals. This comprehensive investigation contributes to a deeper understanding of both the chemical composition and biological activities of Eucalyptus globulus essential oil, highlighting its potential as a source of natural compounds with promising therapeutic properties.
桉树属植物在全球传统医学中的应用非常广泛。然而,由于其精油的广泛使用,其安全性和毒性数据一直备受关注。本研究旨在分析蓝桉精油(EGEO)的化学成分,并在实验室环境和现实生活中探索其抗菌和杀虫特性。研究采用气相色谱/质谱法(GC/MS)鉴定了 EGEO 的化学成分,结果显示 1,8-蒎烯(86.1%)、ο-百里香烯(4.9%)、α-蒎烯(3.8%)、γ-萜品烯(2.2%)和α-萜品烯(1.6%)为主要成分。碟片扩散法显示,EGEO 对黄体微球菌具有最强的抗菌活性(p < 0.05),而最小抑菌浓度测试表明,EGEO 对肺炎链球菌具有显著效果(MIC50 为 2.25 毫克/毫升,MIC90 为 2.79 毫克/毫升)。使用白萝卜和梨食品模型进行的原位抗菌评估显示,与接触应用相比,该物质的活性更高,尤其是在最高浓度(500 微克/升)下,对假单孢菌的抗菌效果最佳(p < 0.05)。此外,研究还使用质谱法和水晶紫法调查了 EGEO 对肠炎沙门氏菌的抗生物膜特性。在杀虫作用方面,浓度为 100 % 的 EGEO 可导致 90 % 的 Harmonia axyridis 死亡。这项全面的研究有助于加深对蓝桉精油化学成分和生物活性的了解,凸显了蓝桉精油作为一种具有治疗功效的天然化合物来源的潜力。
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引用次数: 0
Identification and characterization of sequence variants from a de novo-assembled partial pan-genome of cactus pear (Opuntia L.) 从新组装的仙人掌梨(Opuntia L.)部分泛基因组中鉴定序列变体并确定其特征
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-19 DOI: 10.1016/j.sajb.2024.10.023
Mathabatha F. Maleka , Tsholofelo J. Modise , Morné G. Du Plessis , Gesine M. Coetzer
Members of the genus Opuntia exhibit extensive morphological variation that is seemingly linked to their propensity for occupying extreme environments all over the world. The plants are very important to the agriculture industry as they have many health-promoting nutritional and bioactive compounds. Also, as succulents, they are interesting because they develop peculiar stems – which, however, fulfil the role of leaves – that enable the storage of copious amounts of water. Yet, little is known about the genomes of Opuntia species although having such data can give insight into the genetic diversity that regulates the observed morphological variation as well as the molecular processes responsible for the development of succulent leaves. The current study aimed to sequence and de novo assemble a partial reference genome of Opuntia that would be used to find sequence variants for differentiating species and cultivars of this important agricultural crop. Illumina sequencing was performed on 10 cultivars that represented two species (Opuntia ficus-indica and O. robusta) within the South African Opuntia germplasm. Sequence assembly of 214 million filtered high-quality reads generated a 657 Mbp partial pan-genome that represented ∼30 % of a predicted O. ficus-indica genome. Functional annotation of the assembled sequences at different bioinformatic databases revealed many genes relating to diverse developmental pathways as well as water storage. Further, sequence variants including some 60,000 simple sequence repeats (SSRs) and 118,000 biallelic single nucleotide polymorphisms (SNPs) were discovered by mapping reads of each cultivar against the assembled partial reference pan-genome of Opuntia. While the identified number of SNPs is significant it, however, corresponded to moderate and higher frequency variants only (minor allele frequency [MAF] > 0.2). Also, a random selection of 1,000 SNPs genotyped across all specimens were able to differentiate the 10 cultivars and two species studied herein. Overall, the current study reports the first partial reference pan-genome of Opuntia specimens. The generated data should serve as a valuable genetic resource for future studies seeking to analyze diversity-related phenomena or elucidate the molecular development and growth of Opuntia specimens.
欧庞蒂亚属的成员表现出广泛的形态变异,这似乎与它们喜欢占据世界各地的极端环境有关。这些植物对农业非常重要,因为它们含有许多促进健康的营养和生物活性化合物。此外,作为肉质植物,它们的有趣之处还在于它们长出了奇特的茎--不过,这些茎也起到了叶子的作用--能够储存大量的水分。然而,人们对欧蓬蒂亚(Opuntia)物种的基因组知之甚少,尽管掌握这些数据可以深入了解调节所观察到的形态变异的遗传多样性,以及多汁叶片发育的分子过程。目前的研究旨在对欧蓬蒂亚(Opuntia)的部分参考基因组进行测序和从头组装,用于发现序列变异,以区分这种重要农作物的物种和栽培品种。对南非欧蓬蒂亚种质中代表两个物种(Opuntia ficus-indica 和 O. robusta)的 10 个栽培品种进行了 Illumina 测序。对 2.14 亿条高质量读数进行了序列组装,生成了 657 Mbp 的部分泛基因组,占预测的 O. ficus-indica 基因组的 30%。在不同的生物信息数据库中对组装序列进行功能注释,发现了许多与不同发育途径和储水有关的基因。此外,通过将每个栽培品种的读数与已组装好的部分欧庞蒂亚参考泛基因组进行映射,发现了包括约 60,000 个简单序列重复序列(SSR)和 118,000 个双唇单核苷酸多态性(SNPs)在内的序列变异。虽然发现的 SNPs 数量可观,但仅对应于中等和较高频率的变异(小等位基因频率 [MAF] > 0.2)。此外,在所有标本中随机选择的 1,000 个 SNP 基因分型能够区分本文研究的 10 个栽培品种和 2 个物种。总之,本研究报告了首个欧庞蒂亚(Opuntia)标本的部分参考泛基因组。所生成的数据可作为宝贵的遗传资源,用于今后分析多样性相关现象或阐明欧蓬植物标本分子发育和生长的研究。
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引用次数: 0
Differential effects of foliar and seed priming glycine betaine application on quinoa physiology under varying salinity level 不同盐度条件下叶面喷施甘氨酸甜菜碱和种子喷施甘氨酸甜菜碱对藜麦生理机能的不同影响
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-19 DOI: 10.1016/j.sajb.2024.10.009
Azize Vali , Hossein Zahedi , Akbar Alipour , Younes Sharghi , Mohammad Reza Naeini
Rising soil salinity hinders global crop yields by damaging plants, threatening food security. This study assessed glycine betaine (GB) application methods (foliar, seed priming) and salinity levels (0, 60, 120, 180 mM NaCl) on quinoa over two seasons. For ionic homeostasis, seed priming improved K+/Na+ ratio by 10–15 % at low salinity, while foliar was 12–18 % more effective at high salinity. Seed priming remained 10–15 % superior for roots. Foliar enhanced osmolytes by 12–16 % at low salinity, but seed priming had 16–20 % stronger effects at high salinity. Under low salinity, seed priming provided 8–12 % better protection for chlorophyll and photosynthetic efficiency. At high salinity, foliar GB was 10–15 % best for chlorophyll, seed priming 12–16 % more effective for photosynthetic rate, and foliar GB had an 8–10 % edge for Fv/Fm. GB reduced MDA by 8–12 % at low salinity, 12–16 % with seed priming at medium salinity in 2023, and 16–20 % with foliar in 2024. At high salinity, seed priming decreased MDA by 20–25 % in 2023, while foliar showed a 24–28 % reduction. GB moderately enhanced antioxidants by 8–12 % under mild stress, but seed priming and foliar differed 16–20 % in effectiveness under severe stress. For nutrients, seed priming had a 12–16 % advantage for nitrogen at medium salinity in 2023, while foliar excelled with a 16–20 % increase under high stress in 2024. Seed priming was 16–20 % better for phosphorus at high salinity in 2023, but foliar had 20–25 % superior results in 2024. These findings highlight complex plant responses to GB-salinity interactions, with optimal methods varying by trait, stress level, and environmental conditions.
不断上升的土壤盐度会损害植物,从而阻碍全球作物产量,威胁粮食安全。本研究评估了甘氨酸甜菜碱(GB)在藜麦上两季的施用方法(叶面喷施、种子打底)和盐度水平(0、60、120、180 mM NaCl)。就离子平衡而言,在低盐度条件下,种子底肥可将 K+/Na+ 比率提高 10-15%,而在高盐度条件下,叶面喷施的效果提高 12-18%。种子引种对根系的影响仍为 10-15 %。在低盐度条件下,叶面喷施可提高渗透溶质 12-16%,但在高盐度条件下,种子喷施的效果要强 16-20%。在低盐度条件下,种子底肥对叶绿素和光合作用效率的保护作用提高了 8-12%。在高盐度条件下,叶面喷施 GB 对叶绿素的保护效果好 10-15%,种子喷施对光合速率的保护效果好 12-16%,叶面喷施 GB 对 Fv/Fm 的保护效果好 8-10%。在低盐度条件下,GB 能使 MDA 减少 8-12%;在 2023 年的中等盐度条件下,种子诱导 GB 能使 MDA 减少 12-16%;在 2024 年,叶面喷施 GB 能使 MDA 减少 16-20%。在高盐度条件下,2023 年,种子引种可使 MDA 减少 20-25%,而叶面喷施则减少 24-28%。在轻度胁迫下,GB 能适度提高抗氧化剂 8-12 %,但在严重胁迫下,种子处理和叶面喷施的效果相差 16-20 %。养分方面,在 2023 年中等盐度条件下,种子催肥在氮素方面的优势为 12-16%,而在 2024 年高度胁迫条件下,叶面肥的优势为 16-20%。2023 年,在高盐度条件下,种子催肥对磷的效果提高了 16-20%,但在 2024 年,叶面肥的效果提高了 20-25%。这些发现凸显了植物对 GB 盐度相互作用的复杂反应,最佳方法因性状、胁迫水平和环境条件而异。
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引用次数: 0
Antioxidant potential and cytotoxicity of Cordyceps militaris in vitro culture extracts 冬虫夏草体外培养提取物的抗氧化潜力和细胞毒性
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-18 DOI: 10.1016/j.sajb.2024.09.066
Macuil-Tlachino Victor , Olivo-Vidal Zendy , Gutiérrez-Rebolledo Gabriel , Gómez y Gómez Yolanda de las Mercedez , Jiménez-Martínez Cristian , Hernández Delgado Natalia , Sánchez-Chino Xariss M
Cordyceps militaris is an entomopathogenic fungus with therapeutic potential in humans. The focus is on its hydroalcoholic extracts, which were obtained from biomass cultured in vitro in molasses. The media were subjected to a colourimetric chemical screening, an in vitro antioxidant potential evaluation by DPPH, ABTS and FRAP, and a cytotoxicity test by MTT assay. The results evidenced the presence of reducing sugars, alkaloids, coumarins, cardiac glycosides, and sesquiterpene lactones in both extracts. Additionally, tannins and quinones were identified exclusively in EHM. EHG exhibited a higher concentration of phenolic compounds (6.6 µg GAE/mg), while EHM demonstrated a higher concentration of phytates (40 µg PAE/mg), and both exhibited similar amounts of saponins (2.55±0.18 µg DGE/mg).
The antioxidant potential of the extracts was assessed using the DPPH, ABTS and FRAP assays. The results demonstrated that EHG exhibited a greater effect in both assays, with 60.98 % and 80.70 % inhibition, respectively. In contrast, no significant difference was observed in the DPPH assay, with an average inhibition of 77.83 %. Both extracts exhibited no cytotoxicity at the concentrations tested, demonstrating 100 % viability (LC50 > 300 µg/mL). It was concluded that the use of different carbon sources in both enriched media for the in vitro culture of C. militaris resulted in a modified chemical profile of the obtained biomass, which exhibited greater phytochemical complexity when cultured with molasses. In contrast, the biomass cultured with glucose showed a notable antioxidant potential in vitro, and no extract exhibited cytotoxicity in the tested cell lines.
冬虫夏草是一种昆虫病原真菌,对人类具有治疗潜力。研究的重点是其水醇提取物,这些提取物是从糖蜜中体外培养的生物质中获得的。对培养基进行了比色化学筛选,通过 DPPH、ABTS 和 FRAP 进行了体外抗氧化潜力评估,并通过 MTT 试验进行了细胞毒性测试。结果表明,两种提取物中都含有还原糖、生物碱、香豆素、强心苷和倍半萜内酯。此外,鞣质和醌类物质只在 EHM 中被发现。EHG 的酚类化合物浓度较高(6.6 µg GAE/mg),而 EHM 的植酸盐浓度较高(40 µg PAE/mg),两者的皂甙含量相似(2.55±0.18 µg DGE/mg)。结果表明,EHG 在这两项检测中都表现出更强的效果,抑制率分别为 60.98 % 和 80.70 %。相比之下,在 DPPH 试验中没有观察到明显的差异,平均抑制率为 77.83%。两种提取物在测试浓度下均无细胞毒性,显示出 100 % 的存活率(LC50 > 300 µg/mL)。结论是,在两种富集培养基中使用不同的碳源来体外培养 C. militaris,会改变所获得生物质的化学成分。相比之下,用葡萄糖培养的生物质在体外显示出显著的抗氧化潜力,而且没有提取物在测试的细胞系中显示出细胞毒性。
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引用次数: 0
Essential oil from Ocimum viride exerts caspase-3 interceded apoptosis in human leukemia HL-60 cells 虎杖精油在人类白血病 HL-60 细胞中发挥 caspase-3 介导的细胞凋亡作用
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-18 DOI: 10.1016/j.sajb.2024.10.021
Madhunika Agrawal , A.K. Saxena , Satyam Kumar Agrawal
The present study discusses the apoptotic potential of essential oil from whole plant of Ocimum viride (EOV) against human promyelocytic leukemia HL-60 cells. IC50 value of EOV on HL-60 cells was 0.087, 0.0503, and 0.034 µl/ml respectively at 6, 12, and 24 h. Several parameters were used to access the role of EOV in inducing apoptosis in human HL-60 cancer cells, including nuclear binding fluoroprobes, electron micrographs, DNA laddering, and annexin V-FITC/PI affinity assay. Quantification of BrdU incorporation was done to determine the degree of DNA damage. It was further determined that EOV has an effect on the DNA cell cycle and mitochondria, which was observed in the form of a prominent subdivision of G0 peaks in the analysis of the DNA cell cycle, as well as a reduction in the mitochondrial membrane potential. A higher level of cytosolic cytochrome-c was associated with these events. Bcl-2 depletion and increase in ROS were also analysed. Both initiator caspases namely caspase-9 and -8 activated caspase-3 which eventually leads to apoptosis. These effects revealed that EOV has apoptosis inducing potential towards HL-60 cells and can be a promising candidate for further anticancer studies.
本研究讨论了欧加马全株精油(EOV)对人类早幼粒细胞白血病 HL-60 细胞的凋亡潜能。本研究使用了多种参数,包括核结合荧光探针、电子显微镜、DNA 梯度分析和附件素 V-FITC/PI 亲和力测定,以了解 EOV 在诱导人 HL-60 癌细胞凋亡中的作用。对 BrdU 的掺入进行定量,以确定 DNA 的损伤程度。进一步确定,EOV 对 DNA 细胞周期和线粒体有影响,具体表现为在 DNA 细胞周期分析中 G0 峰明显细分,线粒体膜电位降低。细胞色素-c水平升高与这些事件有关。还分析了 Bcl-2 的耗竭和 ROS 的增加。两种启动式 caspase(即 caspase-9 和 -8)都激活了 caspase-3,最终导致细胞凋亡。这些效应表明,EOV 具有诱导 HL-60 细胞凋亡的潜力,有望成为进一步抗癌研究的候选药物。
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引用次数: 0
Exploring therapeutic potentials of Tridax procumbens for Glioma: An in-silico approach employed network pharmacology, molecular docking, and molecular dynamics simulation 探索脑胶质瘤的治疗潜力:采用网络药理学、分子对接和分子动力学模拟的硅内法
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-18 DOI: 10.1016/j.sajb.2024.10.010
Acharya Balkrishna , Komal Devi , Vedpriya Arya , Anurag Dabas
Glioma is a frequent type of malignant brain tumor, originating from glial cells. Despite advances in understanding the molecular biology and genetics of gliomas, the treatment of high-grade gliomas remains challenging. This study focuses on the identification of potentially active compounds from the medicinal plant Tridax procumbens for the treatment of glioma. Using computational approaches such as virtual screening, ADMET profiling, network pharmacology, molecular docking, and molecular dynamics, ten potential phytocompounds were identified from a total of 106 compounds. Further analysis revealed a network of 170 common genes between the phytochemicals and disease genes, comprising 161 nodes and 2083 edges. Molecular docking experiments demonstrated that luteolin, quercetin, and 6-Hydroxyluteolin 6,3′-dimethyl ether 5-rhamnoside exhibited potential inhibitory activities against two targeted proteins, HSP90 and SRC. Luteolin with HSP90 protein and Quercetin with SRC protein complexes were found to be the highest in docking performance with the least binding affinities −10 kcal mol−1 and −9.3 kcal mol−1 respectively. Molecular dynamics simulations explored Quercetin-SRC and Luteolin-HSP90 interactions over 300 nanoseconds. Quercetin-SRC binding showed dynamic and flexible behavior with an RMSD, RMSF, and radius of gyration of 0.22 nm, 0.35 nm, and 2.12 nm, respectively, whereas Luteolin-HSP90 binding was more stable and less flexible, with an RMSD of 0.14 nm, RMSF of 0.14 nm, a radius of gyration of 1.74 nm, and maintained consistent strong interactions with specific solvent accessibility. The analysis of free binding energy in Quercetin-SRC and Luteolin-HSP90 complexes indicated highly favorable formation driven by altered interactions, with delta total values of −33.74 and −29.26 kcal/mol, respectively. Both phytochemical luteolin and quercetin showed strong inhibitory potential against HSP90 and SRC proteins, indicating their potential as effective therapeutic agent for glioma treatment. This integrated approach emphasizes the significance of these compounds in advancing treatment strategies for glioma. However, pre-clinical and clinical experimentations are required to establish the potential of T. procumbens as a treatment for glioma.
胶质瘤是一种常见的恶性脑肿瘤,源于神经胶质细胞。尽管人们对胶质瘤的分子生物学和遗传学有了更深入的了解,但治疗高级别胶质瘤仍然充满挑战。本研究的重点是从药用植物三七中鉴定出治疗胶质瘤的潜在活性化合物。利用虚拟筛选、ADMET 分析、网络药理学、分子对接和分子动力学等计算方法,从总共 106 种化合物中鉴定出了 10 种潜在的植物化合物。进一步分析发现,植物化合物与疾病基因之间存在 170 个共同基因网络,包括 161 个节点和 2083 条边。分子对接实验表明,木犀草素、槲皮素和 6-羟基木犀草素 6,3′-二甲醚 5-鼠李糖苷对两种靶蛋白 HSP90 和 SRC 具有潜在的抑制活性。研究发现,木犀草素与 HSP90 蛋白的对接性能最高,槲皮素与 SRC 蛋白的对接性能最低,其结合亲和力分别为-10 kcal mol-1 和-9.3 kcal mol-1。分子动力学模拟探索了槲皮素-SRC 和木犀草素-HSP90 在 300 纳秒内的相互作用。槲皮素-SRC 的结合表现出动态和灵活的特性,其有效差值、有效均方差和回旋半径分别为 0.22 nm、0.35 nm 和 2.12 nm;而木犀草素-HSP90 的结合则更加稳定,灵活度较低,其有效差值为 0.14 nm,有效均方差为 0.14 nm,回旋半径为 1.74 nm,并与特定的溶剂可及性保持一致的强相互作用。槲皮素-SRC 和木犀草素-HSP90 复合物的自由结合能分析表明,在相互作用改变的驱动下形成的复合物非常有利,总δ值分别为-33.74 和-29.26 kcal/mol。植物化学物质木犀草素和槲皮素对 HSP90 蛋白和 SRC 蛋白都有很强的抑制潜力,表明它们有可能成为治疗胶质瘤的有效药物。这种综合方法强调了这些化合物在推进胶质瘤治疗策略方面的重要意义。然而,还需要进行临床前和临床实验,以确定 T. procumbens 作为胶质瘤治疗药物的潜力。
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引用次数: 0
Deciphering Cronobacter sakazakii pathogenicity: Exploring virulence factors and host interactions": A short review 解密阪崎肠杆菌的致病性:探索致病因子和宿主相互作用":简评
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-18 DOI: 10.1016/j.sajb.2024.09.065
Nidhi Negi , Nittan Sharma , Harleen kaur , Rajat Lallar , Nitika Thakur
Opportunistic human pathogen called Cronobacter spp. can cause severe illnesses in immunocompromised individuals and newborns. These species are mostly responsible for disorders like meningitis, necrotizing enterocolitis, and bacteremia because they can survive in very dry foods like PIF and have also been identified in various environmental niches, including plants. These species' contamination is ascribed to biofilms, which are biotic or abiotic surface communities. Because they build biofilms on a variety of surfaces, identifying and eliminating them is extremely difficult. For the purpose of creating efficient treatment interventions and preventative measures, it is essential to comprehend the processes of virulence and the relationship between this pathogen and its host. A variety of virulence factors, such as adhesion factors, invasion proteins, biofilm formation components, and secreted toxins, contribute to Cronobacter spp. pathogenicity. Genes involved in capsule formation—such as those involved in exopolysaccharide synthesis—are essential to its pathogenicity because they are critical in desiccation resistance and resistance to host immunological defenses. Furthermore, genes that encode flagella, fimbriae, and outer membrane proteins are linked to host cell adherence and invasion. This review also explores the emerging link between Cronobacter spp. and plants, highlighting the bacterium's ability to survive and persist in the environment because Plants may act as reservoirs, contributing to the contamination of raw agricultural products, which can subsequently enter the food supply chain. Developing focused preventative measures and treatment approaches requires knowledge of the various biological as well as genetic factors that contribute to Cronobacter spp. virulence and how it affects the host. This review clarifies the effects of Cronobacter spp. on the host and investigates the genes linked to virulence in Cronobacter.
称为克罗诺杆菌属的机会性人类病原体可导致免疫力低下的人和新生儿患上严重疾病。这些菌种主要导致脑膜炎、坏死性小肠结肠炎和菌血症等疾病,因为它们可以在非常干燥的食物(如 PIF)中存活,而且还在包括植物在内的各种环境壁龛中被发现。这些物种的污染归因于生物膜,即生物或非生物表面群落。由于它们会在各种表面形成生物膜,因此识别和消除它们极其困难。为了制定有效的治疗干预措施和预防措施,必须了解这种病原体的致病过程及其与宿主之间的关系。多种致病因子,如粘附因子、侵袭蛋白、生物膜形成成分和分泌毒素,都是克罗诺杆菌属致病的原因。参与胶囊形成的基因--如参与外多糖合成的基因--对其致病性至关重要,因为这些基因在抗干燥性和抵抗宿主免疫防御方面起着关键作用。此外,编码鞭毛、纤毛和外膜蛋白的基因与宿主细胞的粘附和入侵有关。本综述还探讨了克罗诺杆菌属与植物之间新出现的联系,强调了该细菌在环境中生存和存活的能力,因为植物可能成为贮藏库,导致未加工的农产品受到污染,进而进入食品供应链。要制定有针对性的预防措施和治疗方法,就必须了解导致克罗诺杆菌属毒力的各种生物和遗传因素,以及它是如何影响宿主的。本综述阐明了克罗诺杆菌属对宿主的影响,并研究了与克罗诺杆菌毒力相关的基因。
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引用次数: 0
The role of selenium and biochar nanoparticles in alleviating cadmium stress in wheat (Triticum aestivum L.) examined via morphophysiological traits and organic acid exudation patterns 通过形态生理特征和有机酸渗出模式研究硒和生物炭纳米颗粒在缓解小麦(Triticum aestivum L.)镉胁迫中的作用
IF 2.7 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-18 DOI: 10.1016/j.sajb.2024.10.016
Mohammad K. Okla , Sahar Mumtaz , Sadia Javed , Muhammad Hamzah Saleem , Ibrahim A. Saleh , Naser Zomot , Yasmeen A. Alwasel , Mostafa A. Abdel-Maksoud , Muhammad Adnan , Shafaqat Ali
Nanotechnology is capturing great interest worldwide due to their stirring applications in various fields and also individual application of selenium (Se) and biochar nanoparticles (BC−NPs) have been studied in many literatures. However, the combined application of Se and BC−NPs is a novel approach and studied in only few studies. For this purpose, a pot experiment was conducted to examine various growth and biochemical parameters in wheat (Triticum aestivum L.) under the toxic concentration of cadmium (Cd) i.e., 50 mg kg−1 which were primed with combined application of Se and BC−NPs i.e., 10 mg L−1. Our results showed that the Cd toxicity in the soil showed a significant declined in the growth, gas exchange attributes and nutrient uptake in T. aestivum. However, Cd toxicity significantly increased oxidative stress biomarkers, organic acids, enzymatic and non-enzymatic antioxidants including their gene expression in T. aestivum. Although, the application of Se and BC−NPs showed a significant increase in the plant growth and biomass, gas exchange characteristics, nutrient uptake, enzymatic and non-enzymatic compounds and their gene expression and also decreased the oxidative stress and Cd uptake in different parts of the plant. These results open new insights for sustainable agriculture practices and hold immense promise in addressing the pressing challenges of heavy metal contamination in agricultural soils.
硒(Se)和生物炭纳米颗粒(BC-NPs)的单独应用已在许多文献中进行了研究。然而,Se 和 BC-NPs 的联合应用是一种新方法,只有少数研究对其进行了研究。为此,我们进行了一项盆栽实验,考察了小麦(Triticum aestivum L.)在镉(Cd)毒性浓度(即 50 mg kg-1)下的各种生长和生化参数。我们的研究结果表明,土壤中的镉毒性显著降低了大麦的生长、气体交换属性和养分吸收。然而,镉的毒性会明显增加大麦的氧化应激生物标志物、有机酸、酶和非酶抗氧化剂,包括它们的基因表达。尽管如此,施用 Se 和 BC-NPs 后,植物的生长和生物量、气体交换特性、养分吸收、酶和非酶化合物及其基因表达均有明显增加,植物不同部位的氧化应激和镉吸收也有所减少。这些结果为可持续农业实践提供了新的见解,并为解决农业土壤重金属污染这一紧迫挑战带来了巨大希望。
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引用次数: 0
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South African Journal of Botany
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