TALE (Three Amino acid Loop Extension) homeodomain transcription factors are key conserved elements in eukaryotic developmental patterning. In plants, this superclass divides into the KNOX and BELL families, which are essential for regulating meristem maintenance, organogenesis, and tissue identity. Recent advances show that TALE proteins are intricately involved in plant reproductive processes, including gametophyte differentiation, embryonic axis formation, and floral organogenesis. They function as molecular scaffolds, integrating spatiotemporal signals and hormonal signaling like auxin, cytokinin, and gibberellin to control phase transitions and reproductive cell fate determination. The lineage-specific expansions and domain rearrangements of TALE genes across bryophytes, gymnosperms, and angiosperms indicate repeated co-option and neofunctionalization throughout land plant evolution. Emerging insights from epigenomics and protein interactomes reveal that TALE complexes modulate cell type-specific transcriptional responses. This review synthesizes current understanding of TALE-mediated regulatory networks during plant reproductive development and presents a conceptual framework for investigating their roles in developmental plasticity and stress-responsive fertility. We also highlight opportunities to utilize TALE-based regulatory modules to develop climate-resilient crops through multi-omics and genome editing approaches. Decoding the reproductive logic embedded in TALE networks offers transformative potential for reprogramming plant development in an era of agricultural and ecological uncertainty.
TALE (Three Amino acid Loop Extension)同源结构域转录因子是真核生物发育模式中的关键保守元件。在植物中,这个超类分为KNOX和BELL家族,它们对分生组织维持、器官发生和组织特性的调节至关重要。近年来的研究表明,TALE蛋白复杂地参与了植物的生殖过程,包括配子体分化、胚轴形成和花器官发生。它们作为分子支架,整合生长素、细胞分裂素和赤霉素等时空信号和激素信号,控制相变和生殖细胞命运的决定。在苔藓植物、裸子植物和被子植物中,TALE基因的谱系特异性扩展和结构域重排表明,在陆地植物的进化过程中,TALE基因重复的共选择和新功能化。来自表观基因组学和蛋白质相互作用组的新见解揭示了TALE复合物调节细胞类型特异性转录反应。本文综述了目前对植物生殖发育过程中tale介导的调控网络的理解,并提出了一个研究其在发育可塑性和应激性生育中的作用的概念框架。我们还强调了利用基于tale的调控模块通过多组学和基因组编辑方法开发气候适应型作物的机会。在农业和生态不确定的时代,解码嵌入在TALE网络中的生殖逻辑为重新编程植物发育提供了变革性的潜力。
{"title":"TALE Homeodomain Proteins in Plant Reproductive Development and Environmental Stress Resilience.","authors":"Xiaoping Niu, Xinni Jiang, Haoran Li, Rongjuan Qin, Yuan Qin","doi":"10.1111/pce.70272","DOIUrl":"https://doi.org/10.1111/pce.70272","url":null,"abstract":"<p><p>TALE (Three Amino acid Loop Extension) homeodomain transcription factors are key conserved elements in eukaryotic developmental patterning. In plants, this superclass divides into the KNOX and BELL families, which are essential for regulating meristem maintenance, organogenesis, and tissue identity. Recent advances show that TALE proteins are intricately involved in plant reproductive processes, including gametophyte differentiation, embryonic axis formation, and floral organogenesis. They function as molecular scaffolds, integrating spatiotemporal signals and hormonal signaling like auxin, cytokinin, and gibberellin to control phase transitions and reproductive cell fate determination. The lineage-specific expansions and domain rearrangements of TALE genes across bryophytes, gymnosperms, and angiosperms indicate repeated co-option and neofunctionalization throughout land plant evolution. Emerging insights from epigenomics and protein interactomes reveal that TALE complexes modulate cell type-specific transcriptional responses. This review synthesizes current understanding of TALE-mediated regulatory networks during plant reproductive development and presents a conceptual framework for investigating their roles in developmental plasticity and stress-responsive fertility. We also highlight opportunities to utilize TALE-based regulatory modules to develop climate-resilient crops through multi-omics and genome editing approaches. Decoding the reproductive logic embedded in TALE networks offers transformative potential for reprogramming plant development in an era of agricultural and ecological uncertainty.</p>","PeriodicalId":222,"journal":{"name":"Plant, Cell & Environment","volume":" ","pages":""},"PeriodicalIF":6.3,"publicationDate":"2025-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145480261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tetraploid Thinopyrum elongatum represents a valuable tertiary genetic pool for wheat improvement, harbouring numerous valuable agronomic traits. Our previous study identified Yr4EL, which confers all-stage resistance to stripe rust, was initially characterized from the tetraploid Th. elongatum chromosome (chr) 4E. To further fine-map Yr4EL, we generated 140 chr 4E structural variants using 60Co-γ irradiation, ph1b-induced, and double monosomy centromere breakage-fusion methods. All variants were cytogenetically characterized using genomic in situ hybridization and fluorescence in situ hybridization. These variants comprised 90 distinct chr 4E structural variants, including 20 fragment deletions, 14 large segment translocations, 19 whole-arm translocations, 10 chr 4E insertion translocations, and 27 terminal small fragment translocations. A high-resolution chr 4E physical map was constructed using molecular markers, delineated into 15 distinct bins. Subsequently, the diploid Th. elongatum reference genome (ASM1179987v1) enabled the fine-mapping of Yr4EL to a 1.8 Mb interval within the distal chr 4EL. Transcriptomic profiling, evolutionary analysis, and qRT-PCR validation identified five genes that might be the Yr4EL candidate. In addition, we deployed Yr4EL into susceptible common wheat varieties, conferring effective stripe rust resistance without a yield penalty, demonstrating its high potential value for wheat breeding programmes.
{"title":"Fine Mapping of the All-Stage Stripe Rust Resistance Gene Yr4EL and Its Utilization in Wheat Resistance Breeding.","authors":"Biran Gong, Hao Zhang, Yuxing Lu, Linfeng Chen, Wei Zhu, Lili Xu, Dandan Wu, Yiran Cheng, Yi Wang, Jian Zeng, Xing Fan, Lina Sha, Haiqin Zhang, Guoyue Chen, Yonghong Zhou, Yinghui Li, Houyang Kang","doi":"10.1111/pce.70278","DOIUrl":"https://doi.org/10.1111/pce.70278","url":null,"abstract":"<p><p>Tetraploid Thinopyrum elongatum represents a valuable tertiary genetic pool for wheat improvement, harbouring numerous valuable agronomic traits. Our previous study identified Yr4EL, which confers all-stage resistance to stripe rust, was initially characterized from the tetraploid Th. elongatum chromosome (chr) 4E. To further fine-map Yr4EL, we generated 140 chr 4E structural variants using <sup>60</sup>Co-γ irradiation, ph1b-induced, and double monosomy centromere breakage-fusion methods. All variants were cytogenetically characterized using genomic in situ hybridization and fluorescence in situ hybridization. These variants comprised 90 distinct chr 4E structural variants, including 20 fragment deletions, 14 large segment translocations, 19 whole-arm translocations, 10 chr 4E insertion translocations, and 27 terminal small fragment translocations. A high-resolution chr 4E physical map was constructed using molecular markers, delineated into 15 distinct bins. Subsequently, the diploid Th. elongatum reference genome (ASM1179987v1) enabled the fine-mapping of Yr4EL to a 1.8 Mb interval within the distal chr 4EL. Transcriptomic profiling, evolutionary analysis, and qRT-PCR validation identified five genes that might be the Yr4EL candidate. In addition, we deployed Yr4EL into susceptible common wheat varieties, conferring effective stripe rust resistance without a yield penalty, demonstrating its high potential value for wheat breeding programmes.</p>","PeriodicalId":222,"journal":{"name":"Plant, Cell & Environment","volume":" ","pages":""},"PeriodicalIF":6.3,"publicationDate":"2025-11-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145480256","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Non-photochemical quenching (NPQ) is a vital photoprotective mechanism in plants, facilitating the dissipation of excess excitation energy as heat within photosystem II. Combined over expression photoprotection proteins, violaxanthin de-epoxidase (VDE), photosystem II subunit S protein (PsbS) and zeaxanthin epoxidase (ZEP) can accelerate the dynamics of photoprotection during the transition of leaves from sun to shade. However, not all transgenic plants exhibited increased efficiency of dynamic photosynthesis and growth performance in previous studies. To investigate the impact of Arabidopsis VDE, PsbS and ZEP genes (VPZ) on rice, we generated rice transgenic plants. The VPZ lines showed comparable NPQ induction and relaxation rate to those reported in previous studies, enhancing their photoprotective capacity. Nevertheless, they exhibit growth retardation, decreased photosynthetic capacity and reduced biomass accumulation under different light regimes and field conditions. This negative impact on the VPZ rice lines may be caused by the alterations to photochemical quenching under normal light conditions. Alleviating or eliminating the potential factor might help to enhance the growth and biomass accumulation in the VPZ lines.
{"title":"Accelerated Relaxation of Photoprotection Impairs Growth and Biomass Accumulation in Rice.","authors":"Yongxing Zheng, Zhiyuan Li, Junhang An, Yanyun Shi, Lichao Chen, Wei Li, Junrui Zhu, Haitao Chen, Sihan Sun, Xiumei Xu, Dandan Lu, Lixin Zhang","doi":"10.1111/pce.70245","DOIUrl":"https://doi.org/10.1111/pce.70245","url":null,"abstract":"<p><p>Non-photochemical quenching (NPQ) is a vital photoprotective mechanism in plants, facilitating the dissipation of excess excitation energy as heat within photosystem II. Combined over expression photoprotection proteins, violaxanthin de-epoxidase (VDE), photosystem II subunit S protein (PsbS) and zeaxanthin epoxidase (ZEP) can accelerate the dynamics of photoprotection during the transition of leaves from sun to shade. However, not all transgenic plants exhibited increased efficiency of dynamic photosynthesis and growth performance in previous studies. To investigate the impact of Arabidopsis VDE, PsbS and ZEP genes (VPZ) on rice, we generated rice transgenic plants. The VPZ lines showed comparable NPQ induction and relaxation rate to those reported in previous studies, enhancing their photoprotective capacity. Nevertheless, they exhibit growth retardation, decreased photosynthetic capacity and reduced biomass accumulation under different light regimes and field conditions. This negative impact on the VPZ rice lines may be caused by the alterations to photochemical quenching under normal light conditions. Alleviating or eliminating the potential factor might help to enhance the growth and biomass accumulation in the VPZ lines.</p>","PeriodicalId":222,"journal":{"name":"Plant, Cell & Environment","volume":" ","pages":""},"PeriodicalIF":6.3,"publicationDate":"2025-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145443414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Abscisic acid (ABA) receptors (PYR) are essential components of the ABA signalling pathway. This study reported wheat PYR gene, TaPYR10, in modulating plant adaptation to drought stress. TaPYR10 contains conserved PYR motifs and targeted nucleus. TaPYR10 transcripts were upregulated in response to drought stress, attributing to the drought response-associated cis-elements that regulate gene transcription. Using Y-2H, BiFC, Co-IP and in vitro pull-down assays, the study revealed interactions among TaPYR10, PP2C phosphatase member TaPP2C30, SnRK2 kinase member TaSnRK2.10 and transcription factor TaNF-YC1 using specific conserved domains, suggesting that TaPYR10 constitutes a regulatory pathway with these partners (i.e., TaPYR10-TaPP2C30-TaSnRK2.10-TaNF-YC1). TaPYR10, TaSnRK2.10 and TaNF-YC1 positively whereas TaPP2C30 negatively regulated drought adaptation by modulating osmotic stress-associated physiological processes. TaNF-YC1 activated the transcription of a suite of stress-responsive genes, including the S-type anion channel gene TaSLAC1-3, delta-pyrroline-5-carboxylate synthetase (P5CS) gene TaP5CR1, superoxide dismutase (SOD) gene TaSOD4, catalase (CAT) gene TaCAT2 and the PIN-FORMED gene TaPIN6, which contributed to the TaPYR10 regulatory pathway-modulated drought response. TaPYR10 transcripts were positively correlated with yield in a wheat variety panel under drought conditions, with haplotype TaPYR10-Hap1 conferring increased target transcripts and drought tolerance. Overall, our findings provide novel insights into plant drought response mediated by the TaPYR10 signalling pathway.
{"title":"TaPYR10 Coordinates Abscisic Acid Sensing and Downstream Gene Activation to Deliver Drought Resilience and Yield Benefits in Wheat.","authors":"Yingjia Zhao, Jingting Zhang, Chengjin Guo, Yanyang Zhang, Wanqiang Xu, Ziyi Wang, Jiaqi Zhang, Xinxin Shi, Kai Xiao","doi":"10.1111/pce.70275","DOIUrl":"https://doi.org/10.1111/pce.70275","url":null,"abstract":"<p><p>Abscisic acid (ABA) receptors (PYR) are essential components of the ABA signalling pathway. This study reported wheat PYR gene, TaPYR10, in modulating plant adaptation to drought stress. TaPYR10 contains conserved PYR motifs and targeted nucleus. TaPYR10 transcripts were upregulated in response to drought stress, attributing to the drought response-associated cis-elements that regulate gene transcription. Using Y-2H, BiFC, Co-IP and in vitro pull-down assays, the study revealed interactions among TaPYR10, PP2C phosphatase member TaPP2C30, SnRK2 kinase member TaSnRK2.10 and transcription factor TaNF-YC1 using specific conserved domains, suggesting that TaPYR10 constitutes a regulatory pathway with these partners (i.e., TaPYR10-TaPP2C30-TaSnRK2.10-TaNF-YC1). TaPYR10, TaSnRK2.10 and TaNF-YC1 positively whereas TaPP2C30 negatively regulated drought adaptation by modulating osmotic stress-associated physiological processes. TaNF-YC1 activated the transcription of a suite of stress-responsive genes, including the S-type anion channel gene TaSLAC1-3, delta-pyrroline-5-carboxylate synthetase (P5CS) gene TaP5CR1, superoxide dismutase (SOD) gene TaSOD4, catalase (CAT) gene TaCAT2 and the PIN-FORMED gene TaPIN6, which contributed to the TaPYR10 regulatory pathway-modulated drought response. TaPYR10 transcripts were positively correlated with yield in a wheat variety panel under drought conditions, with haplotype TaPYR10-Hap1 conferring increased target transcripts and drought tolerance. Overall, our findings provide novel insights into plant drought response mediated by the TaPYR10 signalling pathway.</p>","PeriodicalId":222,"journal":{"name":"Plant, Cell & Environment","volume":" ","pages":""},"PeriodicalIF":6.3,"publicationDate":"2025-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145436670","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jhong-He Yu, Jo-Wei Allison Hsieh, Zhifeng Wang, Jia Wei, Quanzi Li, Ying-Lan Chen, Ying-Chung Jimmy Lin
The cover image is based on the article Decoding Xylem Development in Flowering Plants: Insights From Single-Cell Transcriptomics by Jhong-He Yu et al., https://doi.org/10.1111/pce.70169.