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A hydrolyzed N-propionylthiosuccinimide linker is cleaved by metastable fragmentation, increasing reliability of conjugation site identification in conjugate vaccines 水解的 N-丙酰基硫代琥珀酰亚胺连接体可通过可转移碎片裂解,从而提高了共轭疫苗中共轭部位识别的可靠性。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-21 DOI: 10.1002/rcm.9859
Pablo E. Ramos-Bermúdez, Satomy Pousa, Paulo Carvalho, Rodrigo Soares Caldeira Brant, Michel Batista, Hironobu Hojo, Hilda E. Garay, Abel Roscoe, Alina Rodríguez Mallón, Vladimir Besada, Toshifumi Takao, Luis Javier González

RATIONALE

Conjugation sites are a quality attribute of conjugate vaccines. Proteolysis of bioconjugates synthesized by maleimide–thiol chemistry generates type 2 peptides with a hydrolyzed thiosuccinimide linker containing information on the conjugation sites. A mass spectrometry (MS)-cleavable linker could make the identification of conjugation sites by MS more reliable.

METHODS

Four synthetic type 2 peptides with a hydrolyzed thiosuccinimide linker were analyzed by matrix-assisted laser desorption ionization (MALDI) MS/MS with and without collision gas. These peptides were also partially labeled with 18O in the linker to confirm the proposed fragmentation mechanism. A conjugate vaccine with the hydrolyzed thiosuccinimide linker was reduced and S-alkylated, digested with trypsin and analyzed by liquid chromatography–MS/MS using collision-induced dissociation (CID) and higher-energy collisional dissociation (HCD) fragmentation methods at a normalized collision energy of 30.

RESULTS

A metastable fragmentation preferentially cleaves the newly formed pseudopeptide bond within the hydrolyzed thiosuccinimide linker of type 2 peptides to yield P + 71 and C + 98 ions. These ions make the assignment of conjugation sites more reliable. Partial 18O-labeling and MS/MS analysis confirmed the proposed structures. CID produces these ions as the two most intense signals more favorably than HCD. The latter also yields these ions, guarantees better sequence coverage and promotes other fragmentations in the linker.

CONCLUSIONS

Hydrolyzed thiosuccinimide linker is cleavable in MALDI and electrospray ionization MS/MS analysis by a gas-phase metastable fragmentation. The resulting fragment ions (P + 71 and C + 98) make the identification of conjugation sites more reliable. These results could be extended to self-hydrolyzing maleimides, which efficiently stabilize the thiosuccinimide linker upon hydrolysis, in antibody–drug conjugates.

理由共轭位点是共轭疫苗的一个质量属性。通过马来酰亚胺-硫醇化学合成的生物共轭物经蛋白水解后产生 2 型肽,水解后的硫代丁二酰亚胺连接体含有共轭位点信息。质谱(MS)可清除连接体可使质谱鉴定共轭位点更加可靠:方法:用基质辅助激光解吸电离(MALDI)质谱/质谱分析了带有水解硫代丁二酰亚胺连接体的四种合成 2 型肽,包括使用碰撞气体和不使用碰撞气体的情况。这些肽还在连接体中用 18O 进行了部分标记,以证实所提出的碎裂机制。水解硫代丁二酰亚胺连接体的共轭疫苗经还原和 S-烷基化后,用胰蛋白酶消化,并使用液相色谱-MS/MS,在归一化碰撞能量为 30 的条件下,采用碰撞诱导解离(CID)和高能碰撞解离(HCD)碎裂方法进行分析:结果:可转移的碎片优先裂解水解的硫代琥珀酰亚胺连接体中新形成的假肽键,产生 P + 71 和 C + 98 离子。这些离子使共轭位点的确定更加可靠。部分 18O 标记和 MS/MS 分析证实了所提出的结构。与 HCD 相比,CID 产生的这些离子是两个最强烈的信号。后者也能产生这些离子,保证了更好的序列覆盖率,并促进了连接体中的其他碎片:结论:在 MALDI 和电喷雾电离 MS/MS 分析中,水解的硫代丁二酰亚胺连接体可通过气相易变碎片裂解。由此产生的碎片离子(P + 71 和 C + 98)使共轭位点的鉴定更加可靠。这些结果可以推广到抗体-药物共轭物中的自水解马来酰亚胺中,水解后的马来酰亚胺能有效稳定硫代丁二酰亚胺连接体。
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引用次数: 0
Structural characterization and screening of chemical markers of alkaloids in Aconiti lateralis radix Praeparata and its processed products by UHPLC/Q-TOF-MS/MS and GNPS combining multivariate statistical methods based on the clinic 通过超高效液相色谱/Q-TOF-MS/MS 和 GNPS,结合基于临床的多元统计方法,对 Aconiti lateralis radix Praeparata 及其加工品中生物碱的化学标记进行结构表征和筛选。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-18 DOI: 10.1002/rcm.9857
Jun Xiang, Qi Zhang, Qian Fan, Zekun Zhang, Haibo Huang, Aizhi Wu, Li Rong, Yumei Wang, Cuixian Zhang

Rational

Aconiti Lateralis Radix Praeparata (AC) is a traditional Chinese medicine with a long history of use. However, the current research on the material basis of AC and its processed products is still not comprehensive, especially the changes in lipo-diterpenoid alkaloids (LDAs) that can be hydrolyzed into diester-diterpenoid alkaloids in AC before and after processing. This study aimed to provide material basis guidance for the clinical use of AC and its processed products by comprehensively analyzing the changes in substances between AC and its processed products.

Methods

An ultra-high-performance liquid chromatography with quadrupole time-of-flight mass spectrometry (UHPLC/Q-TOF-MS/MS) approach was optimized to chemical profiling. The MS data were processed using molecular networking combined with the in-house library database to fast characterize the compounds. Multivariate statistical methods were adopted to determine the dissimilarities of components in AC and its processed products.

Results

A total of 310 compounds were tentatively identified from AC, including 109 potential new alkaloids, of which 98 were potential novel LPAs. A metabolomics approach was applied to find the characteristic marker components. As a result, 52 potential chemical markers were selected to distinguish the AC samples of different extraction methods and 42 potential chemical markers for differentiating between AC and its processed products were selected.

Conclusion

The results indicate that UHPLC/Q-TOF-MS/MS and Global Natural Products Social Molecular Networking coupled with multivariate analysis strategies was a powerful tool to rapidly identify and screen the chemical markers of alkaloids between the AC samples and its processed products. These results also indicate that the toxicity of water extracts of AC and its processed products were decreased. This research not only guides the clinical safe use of AC and its processed products, but also extends the application of the molecular networking strategy in traditional herbal medicine.

理由附子(AC)是一种传统中药,具有悠久的使用历史。然而,目前对阿胶及其加工品的物质基础研究尚不全面,尤其是对阿胶中可水解成二酯二萜生物碱的脂二萜生物碱(LDAs)在加工前后的变化研究尚少。本研究旨在通过全面分析交流及其加工品的物质变化,为交流及其加工品的临床使用提供物质基础指导:方法:优化了超高效液相色谱-四极杆飞行时间质谱(UHPLC/Q-TOF-MS/MS)的化学分析方法。质谱数据经分子网络处理后与内部库数据库相结合,可快速确定化合物的特征。采用多元统计方法确定交流电及其加工产品中成分的相似性:结果:从 AC 中初步鉴定出了 310 种化合物,包括 109 种潜在的新生物碱,其中 98 种是潜在的新型 LPA。采用代谢组学方法寻找特征标记成分。结果,选出了 52 个潜在的化学标记物来区分不同提取方法的 AC 样品,并选出了 42 个潜在的化学标记物来区分 AC 及其加工产品:结果表明,UHPLC/Q-TOF-MS/MS 和全球天然产品社会分子网络以及多元分析策略是快速鉴定和筛选 AC 样品及其加工产品中生物碱化学标记物的有力工具。这些结果还表明,AC 水提取物及其加工产品的毒性均有所降低。这项研究不仅为交流及其加工品的临床安全使用提供了指导,还拓展了分子网络策略在传统草药中的应用。
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引用次数: 0
A stepwise surface ionization method for ion mobility spectrometry 用于离子迁移谱分析的逐步表面电离法。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-15 DOI: 10.1002/rcm.9862
Jianhua Lin, Xiaoguang Gao, Jian Jia, Xiuli He

Rationale

The detection of organic nitrogen compounds in exhaled breath is expected to provide an early warning of diseases such as kidney disease. Detecting these trace disease markers in exhaled breath with complex composition and high moisture content is a challenge. Surface ionization (SI) shows a highly selective ionization of organic nitrogen compounds, and it is a good candidate for breath analysis combined with ion mobility spectrometry (IMS).

Methods

A stepwise SI method of low-temperature adsorption/high-temperature ionization was proposed, and trimethylamine (TMA) was detected when combined with an ion mobility spectrometer. TMA at different concentrations and humidity levels and spiked in human breath was detected to evaluate the method's properties.

Results

TMA with concentrations from 2 to 200 ppb was detected. The peak intensity of the TMA characteristic ions was linearly related to the “e” exponent of the concentration with a curve fit of 0.996. A standard deviation of less than 0.306% was obtained with 10 replicate analyses of 10 ppb TMA. The signal intensity difference between dry and wet (relative humidity > 93%) TMA samples is only 2.7%, and the recovery rate of the sample was 106.819%.

Conclusions

SI-IMS based on the stepwise SI method has the advantages of low ionization temperature, high detection sensitivity, strong resistance to humidity interference, and good repeatability. It is a promising method for detecting organic nitrogen compounds in exhaled breath.

理由:检测呼出气体中的有机氮化合物有望为肾病等疾病提供早期预警。在成分复杂、水分含量高的呼出气体中检测这些痕量疾病标记物是一项挑战。表面电离(SI)对有机氮化合物具有高度选择性,是结合离子迁移谱(IMS)进行呼气分析的理想方法:方法:提出了一种低温吸附/高温电离的分步 SI 方法,并结合离子迁移谱仪检测了三甲胺(TMA)。检测了不同浓度和湿度水平的三甲胺,并在人体呼气中进行了添加,以评估该方法的特性:结果:检测到的 TMA 浓度为 2 至 200 ppb。TMA 特征离子的峰值强度与浓度的 "e "指数呈线性关系,曲线拟合值为 0.996。对 10 ppb TMA 进行 10 次重复分析后,标准偏差小于 0.306%。干燥和潮湿(相对湿度大于 93%)的 TMA 样品之间的信号强度差仅为 2.7%,样品的回收率为 106.819%:基于分步 SI 法的 SI-IMS 具有电离温度低、检测灵敏度高、抗湿度干扰能力强、重复性好等优点。它是一种检测呼气中有机氮化合物的有效方法。
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引用次数: 0
Using dopants in the atmospheric pressure chemical ionization ion source to determine the site of protonation by ion mobility spectrometry 在常压化学电离离子源中使用掺杂剂,通过离子迁移率光谱法确定质子化位置。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-15 DOI: 10.1002/rcm.9858
Younes Valadbeigi, Fatemeh Mirzahosseini, Vahideh Ilbeigi, Stefan Matejcik

Rationale

Compounds like caffeine metabolites with more than one proton acceptor site can produce a mixture of isomeric protonated ions (protomers) in electrospray ionization and atmospheric pressure chemical ionization (APCI) ion sources. Discrimination between the protomers is of interest as the charge location influences ion structure and chemical and physical properties.

Methods

Protonation of caffeine in an APCI ion source was studied using ion mobility spectrometry. The hydronium ions, H3O+(H2O)n, are the main reactant ions in the APCI ion source. Different dopant gases including NO2, NH3, and CH3NH2 were used to produce new reactant ions NO+, NH4+, and CH3NH3+, respectively. Density functional theory was employed to explain the experimental results and calculate the energies of the ionization reactions.

Results

The ion mobility spectrum of caffeine showed three peaks. In the presence of NO2 dopant and NO+ reactant ion, caffeine was ionized via charge transfer and formation of M+ ion. As NH3 and CH3NH2 are stronger bases than H2O, the reactant ions NH4+ and CH3NH3+ selectively protonated the more basic site of caffeine, that is, the imidazole nitrogen. Using these dopants, we could attribute the first ion mobility peak to M+ ion, the second peak to the protonation of caffeine at the carbonyl oxygen atom, and the third peak to the protonation of the imidazole nitrogen atom. The calculated collisional cross-sections of M+ and the protomers of caffeine confirmed the peaks' assignment.

Conclusions

The criterion for the selection of an appropriate dopant is that its proton affinity (PA) should be between those of the proton acceptor sites of the molecule studied.

原理:在电喷雾电离和常压化学电离(APCI)离子源中,像咖啡因代谢物这样具有一个以上质子接受位点的化合物会产生异构质子化离子(原生体)混合物。由于电荷位置会影响离子结构以及化学和物理性质,因此区分质子原体非常重要:方法:使用离子迁移谱法研究了咖啡因在 APCI 离子源中的质子化。氢离子 H3O+(H2O)n 是 APCI 离子源中的主要反应离子。使用不同的掺杂气体(包括 NO2、NH3 和 CH3NH2)分别生成新的反应离子 NO+、NH4 + 和 CH3NH3 +。采用密度泛函理论解释了实验结果,并计算了电离反应的能量:咖啡因的离子迁移谱显示出三个峰。在 NO2 掺杂剂和 NO+ 反应离子存在的情况下,咖啡因通过电荷转移电离并形成 M+ 离子。由于 NH3 和 CH3NH2 是比 H2O 更强的碱,反应离子 NH4 + 和 CH3NH3 + 选择性地质子化了咖啡因中碱性更强的位点,即咪唑氮。利用这些掺杂剂,我们可以将第一个离子迁移率峰归因于 M+ 离子,第二个峰归因于咖啡因在羰基氧原子上的质子化,第三个峰归因于咪唑氮原子的质子化。计算得出的 M+ 和咖啡因原生质体的碰撞截面证实了这些峰的归属:选择合适掺杂剂的标准是其质子亲和力(PA)应介于所研究分子的质子接受位点之间。
{"title":"Using dopants in the atmospheric pressure chemical ionization ion source to determine the site of protonation by ion mobility spectrometry","authors":"Younes Valadbeigi,&nbsp;Fatemeh Mirzahosseini,&nbsp;Vahideh Ilbeigi,&nbsp;Stefan Matejcik","doi":"10.1002/rcm.9858","DOIUrl":"10.1002/rcm.9858","url":null,"abstract":"<div>\u0000 \u0000 <section>\u0000 \u0000 <h3> Rationale</h3>\u0000 \u0000 <p>Compounds like caffeine metabolites with more than one proton acceptor site can produce a mixture of isomeric protonated ions (protomers) in electrospray ionization and atmospheric pressure chemical ionization (APCI) ion sources. Discrimination between the protomers is of interest as the charge location influences ion structure and chemical and physical properties.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>Protonation of caffeine in an APCI ion source was studied using ion mobility spectrometry. The hydronium ions, H<sub>3</sub>O<sup>+</sup>(H<sub>2</sub>O)<sub><i>n</i></sub>, are the main reactant ions in the APCI ion source. Different dopant gases including NO<sub>2</sub>, NH<sub>3</sub>, and CH<sub>3</sub>NH<sub>2</sub> were used to produce new reactant ions NO<sup>+</sup>, NH<sub>4</sub><sup>+</sup>, and CH<sub>3</sub>NH<sub>3</sub><sup>+</sup>, respectively. Density functional theory was employed to explain the experimental results and calculate the energies of the ionization reactions.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>The ion mobility spectrum of caffeine showed three peaks. In the presence of NO<sub>2</sub> dopant and NO<sup>+</sup> reactant ion, caffeine was ionized via charge transfer and formation of M<sup>+</sup> ion. As NH<sub>3</sub> and CH<sub>3</sub>NH<sub>2</sub> are stronger bases than H<sub>2</sub>O, the reactant ions NH<sub>4</sub><sup>+</sup> and CH<sub>3</sub>NH<sub>3</sub><sup>+</sup> selectively protonated the more basic site of caffeine, that is, the imidazole nitrogen. Using these dopants, we could attribute the first ion mobility peak to M<sup>+</sup> ion, the second peak to the protonation of caffeine at the carbonyl oxygen atom, and the third peak to the protonation of the imidazole nitrogen atom. The calculated collisional cross-sections of M<sup>+</sup> and the protomers of caffeine confirmed the peaks' assignment.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusions</h3>\u0000 \u0000 <p>The criterion for the selection of an appropriate dopant is that its proton affinity (PA) should be between those of the proton acceptor sites of the molecule studied.</p>\u0000 </section>\u0000 </div>","PeriodicalId":225,"journal":{"name":"Rapid Communications in Mass Spectrometry","volume":"38 18","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141615395","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Application of matrix-assisted laser desorption/ionization in the studies of phosphotungstic acid 基质辅助激光解吸/电离技术在磷钨酸研究中的应用。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-14 DOI: 10.1002/rcm.9870
Irina V. Minenkova, Viacheslav V. Lebedev, Alexey K. Buryak

Rationale

Phosphorotungstic acid (PTA) has many applications, especially in the field of catalysis, due to its structural properties. However, the structure of PTA is studied mainly using theoretical methods. Matrix-assisted laser desorption/ionization (MALDI) has the potential to be an effective method for the experimental study of heteropolyacids. Limitations of MALDI are the high molecular weight of the particles and the complex distribution of isotopic peak intensities. Both problems can be solved by automatically identifying observed signals by generating hypothetical molecular formulas and estimating their isotopic distributions.

Methods

Phosphotungstic acid was studied under conditions of laser desorption/ionization in the absence and in the presence of the matrix. Three types of matrices were used: 2,5-dihydroxybenzoic acid in water, α-cyano-4-hydroxycinnamic acid in acetonitrile, and sinapic acid (SA) in tetrahydrofuran. Part of the peaks in the resulting mass spectra was identified using in-house developed software that implements the automated isotopic distribution brute force.

Results

The most informative mass spectra were obtained using SA as the matrix, which enabled the detection of particles containing PTA dimers for the first time. The compositions of particles incorporating PTA dimers were determined in an automated manner and can be written as [H3PW12O40]2·2H2O (m/z = 5791.2 Da) and [H3PW12O40]2·4H2O (m/z = 5836.5 Da). Other observed species included (WO3)n·PO3, HPO2·(WO3)n, and WO2·(WO3)n clusters, with the latter containing W in mixed oxidation states.

Conclusions

The combined use of MALDI and an automated identification procedure provided valuable experimental data on the structure and fragmentation of phosphotungstic acid. To the best of our knowledge, this study was the first to report on particles containing phosphotungstic acid dimers.

理由磷钨酸(PTA)因其结构特性而有很多应用,特别是在催化领域。然而,对 PTA 结构的研究主要采用理论方法。基质辅助激光解吸/电离(MALDI)有可能成为实验研究杂多酸的有效方法。MALDI 的局限性在于颗粒的高分子量和同位素峰强度的复杂分布。通过生成假设的分子式并估算其同位素分布,自动识别观察到的信号,可以解决这两个问题:方法:在无基质和有基质的激光解吸/电离条件下对磷钨酸进行了研究。使用了三种基质:水溶液中的 2,5-二羟基苯甲酸、乙腈中的α-氰基-4-羟基肉桂酸和四氢呋喃中的山奈酸(SA)。质谱中的部分峰值是通过内部开发的软件识别的,该软件实现了自动同位素分布蛮力:结果:以 SA 为基质得到的质谱信息量最大,首次检测到了含有 PTA 二聚体的颗粒。含有 PTA 二聚体的颗粒的成分是自动测定的,可写成 [H3PW12O40]2-2H2O (m/z = 5791.2 Da) 和 [H3PW12O40]2-4H2O (m/z = 5836.5 Da)。观察到的其他物种包括 (WO3)n-PO3-、HPO2-(WO3)n 和 WO2-(WO3)n 簇,后者含有混合氧化态的 W:MALDI 和自动识别程序的结合使用为磷钨酸的结构和碎片提供了宝贵的实验数据。据我们所知,这项研究首次报道了含有磷钨酸二聚体的颗粒。
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引用次数: 0
Developing δ15N and δ13C isoscapes using whole blood from Magellanic penguins, Spheniscus magellanicus 利用麦哲伦企鹅(Spheniscus magellanicus)的全血绘制δ15N 和 δ13C等值线。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-11 DOI: 10.1002/rcm.9860
Juliana F. Gonzalez, Noela Sánchez-Carnero, Esteban Frere, Pablo Yorio, Javier E. Ciancio

Rationale

Understanding the migration of marine animals is hindered by the limitations of traditional tracking methods. It is therefore crucial to develop alternative methods. Stable isotope-based tracking has proven useful for this task, although it requires detailed isoscapes in the focal area. Here, we present predator-based isoscapes of the coastal zone of the Patagonian Shelf Large Marine Ecosystem (PSLME), which offers a novel tool for geolocation.

Methods

Whole-blood samples from breeding Magellanic penguins nesting at 11 colonies were used to create δ15N and δ13C isoscapes. Isotopic values were assigned to random positions inside their corresponding foraging area. Spatial analysis and data interpolation resulted in δ15N and δ13C isoscapes for the coastal zone of the PSLME, which were validated through cross-validation.

Results

The isoscapes mean standard error ranged from 0.05 to 0.41 for δ15N and from 0.07 to 0.3 for δ13C, similar to the error range of the mass spectrometer used for measuring isotope ratios. Predictive surfaces reflected the latitudinal trends, with δ13C and δ15N values increasing northwards. δ13C values showed a strong latitudinal gradient, while δ15N values had two distinct domains, with higher values in the north. The error surface indicated the highest certainty within 130 km from the shore and within the reported Magellanic penguin foraging areas.

Conclusions

Both isoscapes revealed strong spatial variation. The δ13C isoscape showed a latitudinal gradient, consistent with patterns in other oceans. The δ15N isoscape clearly separated northern and southern colonies, likely influenced by nitrogen sources. The error obtained fell within the measurement error ranges, adding credibility to the models.

理由传统追踪方法的局限性阻碍了对海洋动物洄游的了解。因此,开发替代方法至关重要。基于稳定同位素的追踪方法已被证明可用于这项任务,不过它需要重点区域的详细等值线图。在这里,我们展示了巴塔哥尼亚大陆架大型海洋生态系统(PSLME)沿海地区基于捕食者的等值线图,为地理定位提供了一种新工具:方法:利用在 11 个繁殖地筑巢的繁殖麦哲伦企鹅的全血样本来绘制 δ15N 和 δ13C 等值线图。同位素值被分配到相应觅食区域内的随机位置。通过空间分析和数据插值,得出了 PSLME 沿海地区的 δ15N 和 δ13C 等值线,并通过交叉验证进行了验证:δ15N和δ13C等值线的平均标准误差分别为0.05-0.41和0.07-0.3,与用于测量同位素比值的质谱仪的误差范围相似。预测表面反映了纬度趋势,δ13C 和 δ15N值向北增加。δ13C值显示出很强的纬度梯度,而δ15N值有两个明显的区域,北部的数值较高。误差面显示,在距离海岸 130 千米范围内,以及在报告的麦哲伦企鹅觅食区内,确定性最高:结论:两种等值线均显示出强烈的空间变化。δ13C等值线图显示了纬度梯度,这与其他海洋的模式一致。δ15N等值线明显区分了北部和南部群落,这可能是受氮源的影响。得到的误差在测量误差范围之内,增加了模型的可信度。
{"title":"Developing δ15N and δ13C isoscapes using whole blood from Magellanic penguins, Spheniscus magellanicus","authors":"Juliana F. Gonzalez,&nbsp;Noela Sánchez-Carnero,&nbsp;Esteban Frere,&nbsp;Pablo Yorio,&nbsp;Javier E. Ciancio","doi":"10.1002/rcm.9860","DOIUrl":"10.1002/rcm.9860","url":null,"abstract":"<div>\u0000 \u0000 <section>\u0000 \u0000 <h3> Rationale</h3>\u0000 \u0000 <p>Understanding the migration of marine animals is hindered by the limitations of traditional tracking methods. It is therefore crucial to develop alternative methods. Stable isotope-based tracking has proven useful for this task, although it requires detailed isoscapes in the focal area. Here, we present predator-based isoscapes of the coastal zone of the Patagonian Shelf Large Marine Ecosystem (PSLME), which offers a novel tool for geolocation.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>Whole-blood samples from breeding Magellanic penguins nesting at 11 colonies were used to create δ<sup>15</sup>N and δ<sup>13</sup>C isoscapes. Isotopic values were assigned to random positions inside their corresponding foraging area. Spatial analysis and data interpolation resulted in δ<sup>15</sup>N and δ<sup>13</sup>C isoscapes for the coastal zone of the PSLME, which were validated through cross-validation.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>The isoscapes mean standard error ranged from 0.05 to 0.41 for δ<sup>15</sup>N and from 0.07 to 0.3 for δ<sup>13</sup>C, similar to the error range of the mass spectrometer used for measuring isotope ratios. Predictive surfaces reflected the latitudinal trends, with δ<sup>13</sup>C and δ<sup>15</sup>N values increasing northwards. δ<sup>13</sup>C values showed a strong latitudinal gradient, while δ<sup>15</sup>N values had two distinct domains, with higher values in the north. The error surface indicated the highest certainty within 130 km from the shore and within the reported Magellanic penguin foraging areas.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusions</h3>\u0000 \u0000 <p>Both isoscapes revealed strong spatial variation. The δ<sup>13</sup>C isoscape showed a latitudinal gradient, consistent with patterns in other oceans. The δ<sup>15</sup>N isoscape clearly separated northern and southern colonies, likely influenced by nitrogen sources. The error obtained fell within the measurement error ranges, adding credibility to the models.</p>\u0000 </section>\u0000 </div>","PeriodicalId":225,"journal":{"name":"Rapid Communications in Mass Spectrometry","volume":"38 18","pages":""},"PeriodicalIF":1.8,"publicationDate":"2024-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141578478","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development and validation of an ultrafast method of quantification of rivaroxaban in human serum using laser diode thermal desorption coupled to triple quadrupole mass spectrometry 利用激光二极管热解吸附耦合三重四极杆质谱法开发并验证人血清中利伐沙班的超快速定量方法。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-11 DOI: 10.1002/rcm.9855
Mégane Moreau, Serge Auger, Pierre Picard, Jean Lacoursière, Pedro A. Segura

Rationale

Rivaroxaban is an anticoagulant prescribed to patients who are at risk of medical conditions such as deep-vein thrombosis, pulmonary embolisms, and strokes caused by blood clots. The administration of this drug is monitored to adjust the dosage and evaluate patients' blood concentration. Rapid quantification of this drug in plasma could make it possible to ensure that the dose present in the blood of patients does not represent a danger for the medical intervention to be carried out.

Methods

Liquid chromatography–tandem mass spectrometry is usually employed to quantify rivaroxaban in blood, plasma, and serum. Here, an alternative method of analysis based on laser diode thermal desorption–triple quadrupole mass spectrometry (LDTD-QqQMS) was developed and comprehensively validated. This new method allows the quantification of rivaroxaban in less than 13 s from sample to sample. The extraction of rivaroxaban in human serum was done by a salting-out liquid–liquid extraction with acetonitrile and a saturated sodium chloride solution.

Results

The proposed method allows the quantification of rivaroxaban in less than 13 s from sample to sample. During validation, all criteria were respected. The accuracy was <15% of the nominal value, the precision was <15%CV, and the recovery was ≥89.9%. There were no observed carryover or matrix effects. Analysis of the extracted samples established the stability of dry (24 h) and wet samples (1 week) when samples cannot be analyzed immediately, a considerable advantage in a clinical setting.

Conclusions

This method improves sample throughput by more than 1200% compared to liquid chromatography–tandem mass spectrometry methods of analysis of rivaroxaban and decreases analysis costs by reducing solvent consumption and instrument time.

理由利伐沙班是一种抗凝血剂,适用于因血栓导致深静脉血栓、肺栓塞和中风等疾病的高危患者。对这种药物的用药进行监测,以调整剂量和评估患者的血液浓度。对血浆中的这种药物进行快速定量,可以确保患者血液中的剂量不会对将要进行的医疗干预造成危险:方法:通常采用液相色谱-串联质谱法对血液、血浆和血清中的利伐沙班进行定量。本文开发了一种基于激光二极管热脱附-三重四极杆质谱(LDTD-QqQMS)的替代分析方法,并进行了全面验证。这种新方法可在不到 13 秒的时间内对不同样品中的利伐沙班进行定量。用乙腈和饱和氯化钠溶液进行盐析液-液萃取,提取人血清中的利伐沙班:结果:所提出的方法可以在13秒内对不同样品中的利伐沙班进行定量。在验证过程中,所有标准都得到了遵守。结果:所提出的方法可在 13 分钟内对每个样品进行利伐沙班定量:与液相色谱-串联质谱分析利伐沙班的方法相比,该方法提高了 1200% 以上的样品处理量,并通过减少溶剂消耗和仪器使用时间降低了分析成本。
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引用次数: 0
Improved high-performance liquid chromatography tandem mass spectrometry method for quantification of infliximab in pediatric plasma and its application in therapeutic drug monitoring 改进的高效液相色谱串联质谱法用于定量检测儿科血浆中的英夫利昔单抗及其在治疗药物监测中的应用。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-10 DOI: 10.1002/rcm.9865
Boran Yu, Siyao Jin, Jiaqi Han, Xiaona Li, Jiamin Xu, Ning Sun, Liang Sun, Xiaoling Wang, Libo Zhao

Rationale

The application of infliximab (IFX) to immune-mediated disease is limited by the significant individual variability and associated clinical nonresponse, emphasizing the importance of therapeutic drug monitoring (TDM). Because of the cross-reactivity, limited linear range, and high costs, the clinical application of the previous reported methods was limited. Here, an improved high-performance liquid chromatography tandem mass spectrometry (HPLC-MS/MS) method was developed to address the issues.

Methods

This study developed an improved bioanalytical HPLC-MS/MS method coupling nanosurface and molecular-orientation limited proteolysis technology. The commercially available compound P14R was selected as the internal standard. This method was developed with fewer volume of reagents and was thoroughly validated. The validated method was applied to TDM in pediatric inflammatory bowel disease (IBD).

Results

Chromatography was performed using a Shim-pack GISS-HP C18 metal-free column (3 μm, 2.1 × 100 mm) with a gradient elution of 0.1% formic acid in water and acetonitrile at 0.4 mL/min. Detection and quantitation were performed using electrospray ionization (ESI) and multiple reaction monitoring in the positive ion mode. The method was validated to demonstrate its selectivity, linearity, accuracy, precision, recovery, matrix effect, and stability. The method exhibited a linear dynamic range of 0.3–100 μg/mL, with intra- and inter-day precision and relative errors below 15%. The recovery and matrix effect were measured as 87.28%–89.72% and 41.98%–67.17%, respectively, which were effectively compensated by the internal standard. A total of 32 samples collected from 24 pediatric patients with IBD were analyzed using the validated method, and only 46.9% achieved the reported targeted trough level.

Conclusion

This study developed an improved HPLC-MS/MS method for the quantitative determination of IFX concentration in human plasma. The accurate, reliable, and cost-effective method was validated and utilized in the analysis of clinical samples. The results confirmed the importance of TDM on IFX and the clinical application prospects of the improved method.

理由:英夫利昔单抗(IFX)在免疫介导疾病中的应用受限于显著的个体差异和相关的临床无应答,这就强调了治疗药物监测(TDM)的重要性。由于交叉反应、有限的线性范围和高昂的成本,以前报道的方法在临床上的应用受到了限制。为了解决这些问题,本研究开发了一种改进的高效液相色谱串联质谱(HPLC-MS/MS)方法:本研究开发了一种改进的生物分析 HPLC-MS/MS 方法,该方法结合了纳米表面和分子取向限制蛋白水解技术。选择市售化合物 P14R 作为内标物。该方法试剂用量较少,并通过了全面验证。将验证后的方法应用于小儿炎症性肠病(IBD)的TDM:采用 Shim-pack GISS-HP C18 无金属色谱柱(3 μm,2.1 × 100 mm),以 0.1% 甲酸水溶液和乙腈为流动相进行梯度洗脱,流速为 0.4 mL/min。采用电喷雾离子化(ESI)和正离子模式下的多反应监测进行检测和定量。对该方法的选择性、线性、准确度、精密度、回收率、基质效应和稳定性进行了验证。该方法的线性动态范围为 0.3-100 μg/mL,日内和日间精密度和相对误差均低于 15%。方法的回收率为87.28%~89.72%,基质效应为41.98%~67.17%,内标物有效地补偿了回收率和基质效应。使用验证方法分析了从24名儿科IBD患者处采集的32份样本,只有46.9%的样本达到了报告的目标谷值水平:本研究开发了一种改进的 HPLC-MS/MS 方法,用于定量测定人血浆中的 IFX 浓度。该方法准确、可靠、经济高效,已在临床样本分析中得到验证和应用。结果证实了TDM对IFX的重要性以及改进方法的临床应用前景。
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引用次数: 0
Using peptide barcodes for simultaneous profiling of protein expression from mRNA 使用肽条形码同步分析 mRNA 蛋白表达。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-07 DOI: 10.1002/rcm.9867
Shun Kumano, Kazuki Tanaka, Rena Akahori, Akiko Yanagiya, Akihiro Nojima

Rationale

mRNA technology has begun to play a significant role in the areas of therapeutic intervention and vaccine development. However, optimizing the mRNA sequence that influences protein expression levels is a resource-intensive and time-consuming process. This study introduces a new method to accelerate the selection of sequences of mRNA for optimal protein expression.

Methods

We designed the mRNA sequences in such a way that a unique peptide barcode, corresponding to each mRNA sequence, is attached to the expressed protein. These barcodes, cleaved off by a protease and simultaneously quantified by mass spectrometry, reflect the protein expression, enabling a parallel analysis. We validated this method using two mRNAs, each with different untranslated regions (UTRs) but encoding enhanced green fluorescence protein (eGFP), and investigated whether the peptide barcodes could analyze the differential eGFP expression levels.

Results

The fluorescence intensity of eGFP, a marker of its expression level, has shown noticeable changes between the two UTR sequences in mRNA-transfected cells when measured using flow cytometry. This suggests alterations in the expression level of eGFP due to the influence of different UTR sequences. Furthermore, the quantified amount of peptide barcodes that were released from eGFP showed consistent patterns with these changes.

Conclusions

The experimental findings suggest that peptide barcodes serve as a valuable tool for assessing protein expression levels. The process of mRNA sequence selection, aimed at maximizing protein expression, can be enhanced by the parallel analysis of peptide barcodes using mass spectrometry.

理由:mRNA 技术已开始在治疗干预和疫苗开发领域发挥重要作用。然而,优化影响蛋白质表达水平的 mRNA 序列是一个资源密集且耗时的过程。本研究介绍了一种新方法,可加快选择最佳蛋白质表达的 mRNA 序列:我们在设计 mRNA 序列时,将与每个 mRNA 序列相对应的独特肽条形码附在表达的蛋白质上。这些条形码经蛋白酶裂解后,同时用质谱仪定量,从而反映蛋白质的表达情况,实现平行分析。我们使用两种mRNA验证了这种方法,每种mRNA都有不同的非翻译区(UTR),但都编码增强型绿色荧光蛋白(eGFP),并研究了肽条形码是否能分析不同的eGFP表达水平:结果:在使用流式细胞仪测量经 mRNA 转染的细胞中 eGFP 的荧光强度(其表达水平的标记)时,两个 UTR 序列之间出现了明显的变化。这表明 eGFP 的表达水平受到不同 UTR 序列的影响而发生了变化。此外,从 eGFP 中释放的肽条形码的量化量也显示出与这些变化一致的模式:实验结果表明,肽条形码是评估蛋白质表达水平的重要工具。利用质谱对肽条形码进行平行分析,可以加强旨在最大限度提高蛋白质表达量的 mRNA 序列选择过程。
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引用次数: 0
Gas chromatography–mass spectrometry determination of nicotine and cotinine in urine: A study of the effect of passive smoking 尿液中尼古丁和可替宁的气相色谱-质谱测定:被动吸烟的影响研究。
IF 1.8 3区 化学 Q4 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-07-07 DOI: 10.1002/rcm.9864
Adamantios Krokos, Amvrosios Orfanidis, Orthodoxia Mastrogianni, Foteini Mitsa, Maria Avgeri, Maria Eboriadou, Georgios Theodoridis, Nikolaos Raikos
<div> <section> <h3> Rationale</h3> <p>Recent data suggest that passive smoking has a risk comparable to active smoking. Passive smoking is considered dangerous in children and is suspected as a cause of asthma. However, some reports are opposing such claims, indicating the need for solid results and large-scale studies. This scientific work aims to develop a method for the determination of nicotine (NCOT) and major nicotine's metabolite cotinine (COT) in urine samples, using gas chromatography–mass spectrometry (GC–MS).</p> </section> <section> <h3> Methods</h3> <p>Analysis was performed using a gas chromatograph Agilent Technologies 7890A with an MS 5975C inert XL, EI/CI MSD with Triple-Axis detector. For sample preparation, liquid–liquid extraction was applied after an optimization study with different extraction media. Eventually, 1 mL of dichloromethane was selected for the extraction of 0.5 mL of urine. Suitable chromatographic conditions were found for the rapid and accurate determination of NCOT and COT. Injection of 2 μL was performed using GC–MS, and selected ion monitoring (SIM) analysis was performed with the following ions (<i>m/z</i>): 162 (quantifier ion) and 84, 133, 161 qualifier ions for NCOT, and 176 (quantifier ion) and 98, 118, 119, 147 qualifier ions for COT. Nicotine-D4 (NCOT-D4) and cotinine-D3 (COT-D3) were used as internal standards with quantifier ions 101 and 166, respectively. The retention time (Rt) for NCOT was 7.557 min and 9.743 min for COT.</p> </section> <section> <h3> Results</h3> <p>The method was validated following international principles, assessing characteristics such as absolute recovery, carryover, linearity, specificity, selectivity, accuracy, precision, and stability. The method showed a linear dynamic range from 0.5 to 50 ng/mL, and the limits of detection and quantification were for both NCOT and COT 0.2 and 0.5 ng/mL, respectively. Validation results were found satisfactory. Finally, the method was applied to the analysis of 60 clinical pediatric samples obtained from Aristotle University's pediatric clinic to check for possible exposure to smoke. Concentration levels ranged between 0.5 and 16.2 ng/mL for NCOT and between 1.0 and 25.1 ng/mL for COT.</p> </section> <section> <h3> Conclusions</h3> <p>A rapid, sensitive, accurate, and simple method was developed and used as a tool for the confirmation of passive smoking in children. It is the first method applied to the analysis of such samples belonging to nonsmokers of young age. The total runtime of the GC–MS analysis was short (20 min), and the pretreatment protocol was simple, giving the ability for analysis of a large number of s
理由最新数据表明,被动吸烟的风险与主动吸烟相当。被动吸烟对儿童很危险,被怀疑是导致哮喘的原因之一。然而,一些报告对这种说法提出了反对意见,这表明需要可靠的结果和大规模的研究。这项科研工作旨在开发一种利用气相色谱-质谱法(GC-MS)测定尿样中尼古丁(NCOT)和尼古丁的主要代谢物可替宁(COT)的方法:分析采用 Agilent Technologies 7890A 气相色谱仪,配有 MS 5975C 惰性 XL、EI/CI MSD 和三轴检测器。样品制备采用液液萃取法,在对不同的萃取介质进行优化研究后,采用了液液萃取法。最终选择 1 mL 二氯甲烷萃取 0.5 mL 尿液。找到了快速准确测定 NCOT 和 COT 的合适色谱条件。使用气相色谱-质谱仪进样 2 μL,用以下离子(m/z)进行选择离子监测(SIM)分析:NCOT:162(定量离子)和 84、133、161 个定性离子;COT:176(定量离子)和 98、118、119、147 个定性离子。尼古丁-D4(NCOT-D4)和可替宁-D3(COT-D3)用作内标,定量离子分别为 101 和 166。NCOT 的保留时间(Rt)为 7.557 分钟,COT 为 9.743 分钟:该方法按照国际原则进行了验证,评估了绝对回收率、携带率、线性、特异性、选择性、准确度、精密度和稳定性等特征。该方法的线性动态范围为 0.5 至 50 纳克/毫升,NCOT 和 COT 的检出限和定量限分别为 0.2 和 0.5 纳克/毫升。验证结果令人满意。最后,该方法被用于分析从亚里士多德大学儿科诊所获得的 60 份儿科临床样本,以检查是否存在烟雾暴露。NCOT的浓度水平介于0.5至16.2纳克/毫升之间,COT的浓度水平介于1.0至25.1纳克/毫升之间:该方法快速、灵敏、准确且简单,可用于确认儿童是否被动吸烟。这是第一种用于分析非吸烟者幼年被动吸烟样本的方法。气相色谱-质谱分析的总运行时间很短(20 分钟),预处理方案也很简单,因此可以对大量样品进行日常分析。
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引用次数: 0
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Rapid Communications in Mass Spectrometry
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