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Innate and adaptive immune responses in Hepatitis C virus infections 丙型肝炎病毒感染的先天和适应性免疫反应。
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2026-01-05 DOI: 10.1016/j.virusres.2026.199685
Yutaka Kishida
The host-hepatitis C virus (HCV) interaction determines whether the acute phase of HCV infection will undergo complete resolution or progress to the development of viral persistence and, ultimately, chronic HCV infection. The host cell mechanism that fights against the virus culminates in the production of interferons (IFNs), IFN-stimulated genes, and cytokines as well as the induction of autophagy and apoptosis. Innate immune responses modulate adaptive immune responses. T cells often fail and the virus persists as a result of T-cell exhaustion and the emergence of viral escape mutations. Exhausted T cells are unable to control the virus infection. A reversal of T-cell exhaustion after treatment with direct-acting antivirals (DAAs), characterized by the enhanced proliferation of HCV-specific CD8+T cells, down-regulates programmed cell death-1 (PD-1) expression and transitions cells towards a TCF-1+CD127+ memory-like T-cell phenotype. The early initiation of treatment with DAAs during the acute phase of HCV infection is important because it reduces immune exhaustion and results in stronger HCV-specific T-cell responses after treatment, thereby reducing the risk of possible reinfection. Furthermore, since the successful treatment of HCV by DAAs does not lead to the complete reversal of T-cell exhaustion, HCV reinfections may occur. Therefore, a prophylactic vaccine is needed to avoid reinfections and achieve the global elimination of HCV infections. This review provides an overview of the current understanding of the pathophysiology behind HCV infection where the current research and treatment are pointing towards.
宿主-丙型肝炎病毒(HCV)的相互作用决定了HCV感染的急性期是否会完全消退,还是会发展为病毒持续存在,并最终发展为慢性HCV感染。宿主细胞对抗病毒的机制在产生干扰素(ifn)、干扰素刺激基因和细胞因子以及诱导自噬和凋亡中达到顶峰。先天免疫反应调节适应性免疫反应。由于T细胞衰竭和病毒逃逸突变的出现,T细胞经常失效,病毒持续存在。耗尽的T细胞无法控制病毒感染。直接作用抗病毒药物(DAAs)治疗后T细胞衰竭的逆转,其特征是hcv特异性CD8+T细胞的增殖增强,下调程序性细胞死亡-1 (PD-1)的表达,并将细胞转变为TCF-1+CD127+记忆样T细胞表型。在HCV感染的急性期早期开始DAAs治疗是很重要的,因为它可以减少免疫衰竭,并在治疗后产生更强的HCV特异性t细胞反应,从而降低可能再次感染的风险。此外,由于DAAs成功治疗HCV并不能完全逆转t细胞衰竭,HCV可能会再次感染。因此,需要一种预防性疫苗来避免再感染并实现在全球消除丙型肝炎病毒感染。这篇综述概述了当前对HCV感染背后的病理生理学的理解,以及当前研究和治疗的方向。
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引用次数: 0
Identification of novel small chemical compounds that inhibit Ebola virus VP40-mediated virus-like particle production 鉴定抑制埃博拉病毒vp40介导的病毒样颗粒产生的新型小化合物。
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2026-01-03 DOI: 10.1016/j.virusres.2026.199684
Tomoko Tsuruta , Satoshi Mizuta , Ayako Izumisawa , Jiro Yasuda , Shuzo Urata
The central role of Ebola virus (EBOV) VP40 in nascent virion assembly and budding from infected host cells makes it an important therapeutic target. Previously, we reported two novel chemical compounds (NUSU#1 and NUSU#2) that inhibit EBOV VP40-mediated virus-like particle (VLP) production. In this study, we aimed to develop and identify novel synthetic compounds derived from NUSU#1. Forty-five compounds were synthesized and examined for their effects in vitro. Through cell viability and screening assays that we previously developed and reported, five novel synthesized compounds were selected for their inhibitory effects on EBOV VP40-mediated VLP production. Although none of them showed a stronger inhibitory effect on VLP production than NUSU#1, four of the five selected compounds exhibited a statistically significant reduction in EBOV VP40-mediated VLP production compared with the control treatment using a VLP assay.
埃博拉病毒(EBOV) VP40在新生病毒粒子组装和受感染宿主细胞出芽中的核心作用使其成为重要的治疗靶点。此前,我们报道了两种抑制EBOV vp40介导的病毒样颗粒(VLP)产生的新化合物(nusu# 1和nusu# 2)。在本研究中,我们旨在开发和鉴定从NUSU#1衍生的新的合成化合物。合成了45种化合物,并对其体外作用进行了研究。通过我们之前开发和报道的细胞活力和筛选试验,我们选择了五种新的合成化合物,它们对EBOV vp40介导的VLP产生有抑制作用。虽然它们对VLP产生的抑制作用都不如nusu# 1,但与使用VLP检测的对照处理相比,5种选定化合物中有4种对EBOV vp40介导的VLP产生的抑制作用具有统计学意义。
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引用次数: 0
Beyond burden: a Quality of Care Index (QCI) assessment of hepatitis B in 204 countries, 1990-2021 超越负担:1990-2021年204个国家乙型肝炎护理质量指数评估
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2026-01-02 DOI: 10.1016/j.virusres.2025.199683
Yongzheng Hu , Xinyue Qi , Yan Jiang , Wei Jiang
Background Hepatitis B virus (HBV) remains a leading cause of cirrhosis and hepatocellular carcinoma. Improving outcomes requires effective health-system performance and equitable delivery of prevention and care.
Methods Using Global Burden of Disease 1990-2021 estimates for 204 countries/territories, we derived an HBV Quality of Care Index (QCI) from four secondary ratios (mortality-to-incidence, DALYs-to-prevalence, YLL-to-YLD, prevalence-to-incidence) using principal component analysis and rescaled it to 0-100. We assessed temporal trends, sex- and age-specific patterns, Socio-demographic Index (SDI) gradients, and inequality (slope and concentration indices), and generated projections to 2034.
Findings Global QCI increased modestly since 1990, but substantial cross-national heterogeneity persisted and widened. High-SDI settings generally achieved the highest QCI with narrowing female-male differences, whereas many low and lower-middle SDI countries stagnated or declined. QCI was consistently lower at older ages, consistent with late presentation and constrained advanced care. Projections suggest incremental gains approaching a plateau by the early 2030s, with persistent dispersion between countries through 2034.
Interpretation HBV care quality is improving but not equitably. Accelerating progress will require integrated, One Health-oriented actions: sustaining timely infant vaccination (including birth dose) and prevention of mother-to-child transmission, expanding decentralized testing with reliable linkage to affordable antiviral therapy, and strengthening primary care, supply chains, and data systems to target under-performing populations. These measures provide a pragmatic path to narrowing QCI gaps and advancing the 2030 elimination targets.
背景:乙型肝炎病毒(HBV)仍然是肝硬化和肝细胞癌的主要病因。改善结果需要有效的卫生系统绩效和公平地提供预防和护理。方法利用204个国家/地区1990-2021年全球疾病负担的估计数据,采用主成分分析从四个次要比率(死亡率与发病率、dalys与患病率、yll与yld、患病率与发病率)中得出HBV护理质量指数(QCI),并将其重新调整为0-100。我们评估了时间趋势、性别和年龄特定模式、社会人口指数(SDI)梯度和不平等(斜率和浓度指数),并生成了到2034年的预测。研究结果:自1990年以来,全球QCI适度增加,但大量的跨国异质性持续存在并扩大。高SDI环境通常实现最高的QCI,男女差异缩小,而许多低和中低SDI国家停滞不前或下降。老年患者的QCI持续较低,与晚期就诊和受限的晚期护理一致。预测表明,到本世纪30年代初,增量收益将趋于平稳,到2034年,各国之间的差距将持续存在。HBV护理质量正在改善,但不公平。加快进展需要以“同一个健康”为导向的综合行动:维持及时的婴儿疫苗接种(包括出生剂量)和预防母婴传播,扩大分散检测并与负担得起的抗病毒治疗建立可靠联系,并加强初级保健、供应链和数据系统,以目标人群为目标。这些措施为缩小质量ci差距和推进2030年消除目标提供了务实途径。
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引用次数: 0
Replication competent La Crosse virus pseudotyped VSV vector system as vaccine and serological diagnostic reagent 复制胜任型拉克罗斯病毒假型VSV载体系统作为疫苗和血清学诊断试剂。
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.virusres.2025.199676
Ianko Iankov , Arun Ammayappan , Kimberly Viker , Carla Weisend , Matthew Beard , Brandy Russell , Elitza Theel , Hideki Ebihara , Evanthia Galanis
La Crosse encephalitis virus (LACV) is the second most frequently diagnosed arboviral cause of meningoencephalitis and the most common cause of pediatric viral encephalitis in the US. Multiple factors, including climate changes and invasive mosquito species adaptation contribute to the emerging spread of LACV in new areas. There is an expanding need for broader investigation on seroprevalence, development of novel antiviral drugs and vaccines for prevention of LACV infection.
We pseudotyped replication-competent vesicular stomatitis virus (VSV) vectors with LACV surface glycoproteins using wild type (VSV-LACV) and attenuated (VSV-M51-LACV) backbones. Recombinant strains were tested as diagnostic tools in LACV serology and as potential live anti-LACV vaccine in vivo.
The attenuated VSV-M51R-LACV vector was safe after direct intracranial inoculation in mice. Intraperitoneal immunization induced strong humoral response reaching average complete neutralization titer (VN100%) of 4640 in Balb/c and 2800 in interferon type I receptor knockout transgenic (Ifnarko-CD46Ge) mice respectively. Serum antibodies from vaccinated mice efficiently neutralized LACV with average titers between 229 and 2926 for the different LACV strains. We demonstrated that virus neutralization (VN) based on LACV-pseudotyped VSV is a valuable diagnostic assay for serodiagnostics of anti-LACV response in humans. VN titers in the range of 8–4096 were detected in sera from all individuals (n = 20) with confirmed infection. The assay also detected LACV-specific antibody response in cerebrospinal fluid of patients with CNS infection. VN was adapted for detection of neutralizing antibodies extracted from dried blood spots (DBS) samples with potential application in large scale LACV serologic surveillance.
These data demonstrate that recombinant VSV-M51R-LACV is a valuable diagnostic tool as well as a promising live vaccine platform for immunoprophylaxis against LACV infection.
拉克罗斯脑炎病毒(LACV)是脑膜脑炎的第二常见虫媒病毒病因,也是美国儿童病毒性脑炎的最常见病因。气候变化和入侵蚊种适应等多种因素导致了LACV在新地区的传播。目前越来越需要更广泛地调查血清阳性率,开发新的抗病毒药物和预防LACV感染的疫苗。我们利用野生型(VSV-LACV)和减毒型(VSV- m51 -LACV)主干,设计了具有复制能力的水疱性口炎病毒(VSV)表面糖蛋白的“假型”载体。重组菌株作为LACV血清学诊断工具和潜在的体内抗LACV活疫苗进行了测试。小鼠直接颅内接种VSV-M51R-LACV减毒载体是安全的。腹腔免疫诱导强烈的体液应答,Balb/c小鼠达到平均完全中和滴度(VN100%) 4640,干扰素I型受体敲除转基因(Ifnarko-CD46Ge)小鼠达到平均完全中和滴度(VN100%) 2800。接种小鼠血清抗体能有效中和不同LACV毒株,平均滴度在229 ~ 2926之间。我们证明了基于lacv伪型VSV的病毒中和(VN)是一种有价值的血清诊断人类抗lacv反应的诊断方法。在所有确诊感染者(n=20)的血清中检测到VN滴度在8-4,096之间。该试验还检测了中枢神经系统感染患者脑脊液中lacv特异性抗体反应。VN适用于检测从干血斑(DBS)样品中提取的中和抗体,在大规模LACV血清学监测中具有潜在的应用前景。这些数据表明,重组VSV-M51R-LACV是一种有价值的诊断工具,也是一种有前景的LACV感染免疫预防活疫苗平台。
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引用次数: 0
Corrigendum to “Novel quantitative RT qPCR assay for the detection of European strains of tick borne encephalitis virus in the United Kingdom” [Virus Research Volume 362, December 2025, 199658] “在英国检测欧洲蜱传脑炎病毒株的新型定量RT - qPCR测定法”的勘误表[病毒研究卷362,2025年12月,199658]。
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.virusres.2025.199679
Mollie Curran-French , Jake D’Addiego , Stuart Dent , Gillian Slack , Kyle Perrins , Fern Jenkins , Nyah Davis , Roger Hewson
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引用次数: 0
Remdesivir as a potent antiviral against prototype and current epidemic Oropouche virus strains (BeAn19991 and PE-IAM4637) 雷姆德西韦是一种有效的抗病毒药物,用于治疗原型和当前流行的Oropouche病毒株(BeAn19991和PE-IAM4637)。
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.virusres.2025.199680
Rokusuke Yoshikawa , Yoshiyasu Ishii , Naomi Sano , Jiro Yasuda
The Oropouche virus (OROV), an orthobunyavirus transmitted by biting midges, is the causative agent of Oropouche fever, which has caused multiple outbreaks in South and Central America. During the most recent epidemic in 2023–2025, >25,000 laboratory-confirmed cases were reported in Brazil, and no licensed antivirals have been reported to be effective date. In this study, we generated a recombinant OROV-expressing enhanced green fluorescent protein (rOROV/GFP) to facilitate rapid and sensitive antiviral evaluation. Growth kinetics demonstrated that rOROV/GFP replicated less efficiently than wild-type rOROV and that the historical prototype strain (BeAn19991) exhibited higher replication efficiency than the recent epidemic isolate (PE-IAM4637) in both Vero E6 and Huh7 cells. Using this system, we evaluated the antiviral activity of ribavirin, favipiravir (T-705), and remdesivir against OROV. All three compounds inhibited OROV replication in a dose-dependent manner, with remdesivir showing the greatest potency (IC₅₀ values of 0.31 µM). Taken together, our findings highlight remdesivir as a promising candidate for the treatment of Oropouche fever caused by OROV. Furthermore, we established rOROV/GFP as a powerful tool for antiviral drug screening.
奥罗波切病毒(OROV)是一种由蚊虫传播的正布尼亚病毒,是奥罗波切热的病原体。奥罗波切热已在南美洲和中美洲引起多次暴发。在2023年至2025年的最近一次流行期间,巴西报告了2.5万多例实验室确诊病例,没有获得许可的抗病毒药物报告到生效日期。在本研究中,我们构建了表达增强型绿色荧光蛋白(rOROV/GFP)的重组orov,以促进快速、敏感的抗病毒评价。生长动力学表明,rOROV/GFP在Vero E6和Huh7细胞中的复制效率低于野生型rOROV,而历史原型菌株(BeAn19991)在Vero E6和Huh7细胞中的复制效率均高于最近流行的分离株(PE-IAM4637)。利用该系统,我们评估了利巴韦林、法匹拉韦(T-705)和瑞德西韦对OROV的抗病毒活性。所有三种化合物都以剂量依赖的方式抑制OROV复制,其中瑞德西韦显示出最大的效力(IC₅0值为0.31µM)。综上所述,我们的研究结果突出了瑞德西韦作为治疗由OROV引起的Oropouche热的有希望的候选药物。此外,我们还建立了rOROV/GFP作为抗病毒药物筛选的有力工具。
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引用次数: 0
Optimization of lipid nanoparticles loaded with ribonucleoprotein-oligonucleotide complexes for in vivo delivery of a CRISPR/Cas9 system targeting hepatitis B virus 负载核糖核蛋白-寡核苷酸复合物的脂质纳米颗粒在体内递送靶向乙型肝炎病毒的CRISPR/Cas9系统的优化
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2026-01-01 DOI: 10.1016/j.virusres.2025.199682
Rupaly Akhter , Bouchra Kitab , Mohammad Enamul Hoque Kayesh , Rina Shimizu , Haruno Onuma , Naoki Yamamoto , Shintaro Ogawa , Masaya Sugiyama , Yasuhito Tanaka , Yusuke Sato , Michinori Kohara , Kyoko Tsukiyama-Kohara
Patients with chronic hepatitis B virus (HBV) infection may benefit from clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)-based gene therapy. We previously identified a guide RNA (WJ11) that suppressed HBV replication in vitro and in vivo; however, we were unable to achieve delivery at clinically feasible doses in vivo using an adeno-associated virus (AAV) vector. Lipid nanoparticle (LNP)-based WJ11/Cas9 ribonucleoprotein-oligonucleotide complex delivery suppressed HBV replication by 2–3-fold more than did AAV-based delivery. In the present study, we investigated the HBV replication-suppressive effects of LNP/WJ11/Cas9 complexes after intravenous administration to persistently HBV genotype C-infected humanized chimeric mice. CL4H6 (ionizable lipid) LNPs were selected as the first candidate for WJ11/Cas9 delivery based on their reported high encapsulation efficiency; however, no significant anti-HBV effect was noted in serum or hepatic tissue. The ionizable lipid candidate CL4F11_ε-3 improved absolute serum HBV values to a certain degree but had no significant effect on hepatic HBV DNA or covalently closed circular (ccc)DNA levels. CL4F11_ζ-2 LNP/WJ11/Cas9, a new complex prepared through structural optimization of the ionizable lipid and heat treatment of WJ11, showed suppressive effect for serum viral load along with a reduction of hepatic HBV DNA, HBV cccDNA, HBsAg, and HBcrAg levels when compared with controls. Therefore, LNP-based delivery of this CRISPR/Cas9 formula holds promise for the treatment of chronic HBV infection.
慢性乙型肝炎病毒(HBV)感染患者可能受益于聚集性定期间隔短回文重复序列(CRISPR)/CRISPR相关蛋白9 (Cas9)基因治疗。我们之前在体外和体内发现了一种抑制HBV复制的向导RNA (WJ11);然而,我们无法使用腺相关病毒(AAV)载体实现临床可行剂量的体内递送。基于脂质纳米颗粒(LNP)的WJ11/Cas9核糖核蛋白-寡核苷酸复合物递送对HBV复制的抑制作用是基于aav递送的2-3倍。在本研究中,我们研究了LNP/WJ11/Cas9复合物在静脉给药后对持续HBV基因型c感染的人源嵌合小鼠的HBV复制抑制作用。CL4H6(可电离脂质)LNPs被选为WJ11/Cas9递送的第一个候选物,因为它们具有较高的包封效率;然而,在血清或肝组织中没有发现明显的抗hbv作用。可电离脂质候选物CL4F11_ε-3在一定程度上改善了血清HBV绝对值,但对肝脏HBV DNA或共价闭合环(ccc)DNA水平无显著影响。CL4F11_ζ-2 LNP/WJ11/Cas9是通过对WJ11的可电离脂质进行结构优化和热处理制备的新复合物,与对照组相比,该复合物具有抑制血清病毒载量的作用,同时降低了肝脏HBV DNA、HBV cccDNA、HBsAg和HBcrAg水平。因此,基于lnp的CRISPR/Cas9配方的递送有望治疗慢性HBV感染。
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引用次数: 0
Transcriptomic analysis of Crandell-Rees feline kidney cell infections with field and vaccine feline calicivirus strains 野地和疫苗猫杯状病毒株感染Crandell-Rees猫肾细胞的转录组学分析。
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2025-12-21 DOI: 10.1016/j.virusres.2025.199681
Emily Kwan, Alistair R. Legione, Carol A. Hartley, Joanne M. Devlin
Feline upper respiratory tract disease (URTD) is a significant health concern in crowded environments, such as catteries and shelters. Feline calicivirus (FCV), which is endemic in domestic cats, is a major contributor to URTD and can cause a range of diseases that vary in severity. Unlike many other caliciviruses, including human caliciviruses and noroviruses, FCV replicates efficiently in cell culture and is a well-established model for studying calicivirus-host cell interactions. In this study, RNA-sequencing was used to characterise host and viral transcription profiles in Crandell-Rees feline kidney (CRFK) cells infected with either the attenuated F9 vaccine strain or a virulent field strain associated with virulent systemic FCV (VS-FCV) disease. At six hours post-infection, both strains induced the upregulation of inflammatory and stress response pathways, while genes involved in metabolism, cell signalling, and extracellular matrix maintenance were downregulated. Between field and vaccine strains, pathways related to membrane signalling and cytoskeletal organisation were uniquely altered in the field strain, while the F9 vaccine strain distinctly altered chromatin organisation, cytokine signalling and mitochondrial metabolism. These findings demonstrate the virulence of FCV strains differentially influences host gene expression in CRFK cells, which may inform host-pathogen interactions that contribute to FCV pathogenesis and variations in disease outcomes.
猫上呼吸道疾病(URTD)在拥挤的环境中是一个重要的健康问题,如猫舍和收容所。猫杯状病毒(FCV)在家猫中流行,是造成尿路感染的主要原因,可引起一系列严重程度不同的疾病。与许多其他的杯状病毒不同,包括人类杯状病毒和诺如病毒,FCV在细胞培养中有效地复制,是研究杯状病毒与宿主细胞相互作用的成熟模型。在这项研究中,rna测序用于表征被F9减毒疫苗株或与强毒性系统性FCV (VS-FCV)疾病相关的强毒野毒株感染的CRFK细胞的宿主和病毒转录谱。在感染后6小时,两种菌株诱导炎症和应激反应途径上调,而参与代谢、细胞信号传导和细胞外基质维持的基因下调。在田间菌株和疫苗菌株之间,与膜信号传导和细胞骨架组织相关的途径在田间菌株中发生了独特的改变,而F9疫苗菌株明显改变了染色质组织、细胞因子信号传导和线粒体代谢。这些发现表明,FCV菌株的毒力对CRFK细胞中宿主基因表达的影响存在差异,这可能为宿主-病原体相互作用提供信息,从而导致FCV发病机制和疾病结局的变化。
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引用次数: 0
Characterization of minigenome systems for Hantaan and Seoul hantaviruses 汉坦病毒和首尔汉坦病毒小基因组系统的表征
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2025-12-17 DOI: 10.1016/j.virusres.2025.199678
Shilpi Jain, Punya Shrivastava-Ranjan, Joel M. Montgomery, Christina F. Spiropoulou, César G. Albariño
Some rodent-borne hantaviruses are known to cause hemorrhagic fever with renal syndrome in Europe and Asia, and hantavirus cardiopulmonary syndrome in the Americas. Despite the significant public health threat caused by hantaviruses, there are no antiviral therapeutics approved to treat hantavirus infections. One of the major limitations to study these viruses is the requirement for biosafety level 3 (BSL-3) containment. To address this concern, we previously generated a Seoul virus (SEOV) minigenome system which could be used to screen antivirals at BSL-2 level. Here, we report the development of a similar minigenome system based on the L segment of the prototype hantavirus, Hantaan virus (HTNV). In addition, we examined the activity of minigenomes based on M and S segments of SEOV and HTNV. Furthermore, we used the new HTNV minigenome system to confirm the activity of a selected group of antiviral compounds targeting the viral polymerase. All tested compounds (2′-deoxy-2′-Fluorocytidine, baloxavir, remdesivir and ribavirin) show potent anti-HTNV activity. The minigenome systems could be useful tools to study replication mechanisms and to screen antiviral compounds against hantaviruses at lower containment laboratories.
已知一些啮齿动物传播的汉坦病毒在欧洲和亚洲引起肾综合征出血热,在美洲引起汉坦病毒心肺综合征。尽管汉坦病毒对公众健康造成重大威胁,但目前还没有批准用于治疗汉坦病毒感染的抗病毒药物。研究这些病毒的主要限制之一是对生物安全3级(BSL-3)控制的要求。为了解决这一问题,我们之前创建了一个首尔病毒(SEOV)小基因组系统,可用于筛选BSL-2水平的抗病毒药物。在这里,我们报告了基于汉坦病毒原型,汉坦病毒(HTNV) L段的类似的小基因组系统的开发。此外,我们还检测了基于SEOV和HTNV的M和S片段的小基因组的活性。此外,我们使用新的HTNV小基因组系统来确认一组选定的抗病毒化合物靶向病毒聚合酶的活性。所有测试的化合物(2 ' -脱氧-2 ' -氟胞苷、巴洛韦、瑞德西韦和利巴韦林)都显示出有效的抗htnv活性。小基因组系统可能是研究复制机制和筛选抗汉坦病毒的抗病毒化合物的有用工具。
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引用次数: 0
A weakly supervised framework for automated biological assay assessment 自动化生物分析评估的弱监督框架
IF 2.7 4区 医学 Q3 VIROLOGY Pub Date : 2025-12-17 DOI: 10.1016/j.virusres.2025.199677
Hongru Jiang , Qianyu Guo , Xiao Zhi , Heng Li , Yao Chen
The quantification of biological assays, such as plaque and microbial assays is essential in virology and microbiology research. However, low-contrast images of stain-free samples are difficult to segment accurately and manual labeling is time-consuming. To address these problems, we present a weakly supervised framework for automated biological assay assessment. First, we collected and constructed weakly supervised datasets for viral plaque and microbial colony segmentation using point and bounding box annotations respectively. Then, we proposed an adaptive region-growing algorithm that generates mask annotations, reducing annotation burden. We adapted and fine-tuned automatic Segment Anything Model (SAM) to for biological specimen segmentation, demonstrating improved accuracy across diverse assay types. Moreover, we also validated our method on live cell segmentation. Finally, we applied our model in antiviral compound assessment and achieved comparable results to manual assessment. In summary, our framework provides an efficient and automated solution for biological assay quantification, reducing annotation burden while maintaining accuracy.
在病毒学和微生物学研究中,菌斑和微生物分析等生物分析的定量是必不可少的。然而,无染色样品的低对比度图像难以准确分割,人工标记耗时。为了解决这些问题,我们提出了一个弱监督框架的自动化生物分析评估。首先,我们收集并构建了弱监督数据集,分别使用点和边界框注释对病毒斑块和微生物菌落进行分割。然后,我们提出了一种自适应区域增长算法来生成掩码注释,减少了注释负担。我们调整和微调自动分割任何模型(SAM),以用于生物标本分割,证明在不同的分析类型中提高了准确性。此外,我们还验证了我们的方法在活细胞分割。最后,我们将该模型应用于抗病毒化合物的评估,获得了与人工评估相当的结果。总之,我们的框架为生物分析定量提供了一个高效和自动化的解决方案,在保持准确性的同时减少了注释负担。
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引用次数: 0
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Virus research
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