首页 > 最新文献

Veterinary microbiology最新文献

英文 中文
BoHV-1 UL3 inhibits RLR signaling response by degrading MAVS BoHV-1 UL3通过降解MAVS抑制RLR信号反应。
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-10 DOI: 10.1016/j.vetmic.2025.110791
Yanan Xu , Wenqing Ma , Hongmei Wang , Hongbin He
Bovine herpesvirus 1 (BoHV-1) infection can lead to host immunosuppression, and its tegument proteins play a critical role in suppressing antiviral immune responses. However, the mechanisms by which BoHV-1 tegument proteins modulate the RLR signaling pathway and influence the replication of bovine RNA viruses remain poorly understood. Here, we demonstrated that BoHV-1 tegument protein UL3 significantly suppresses BPIV3 infection-trigged RLR signaling response and promotes virus replication. Through in-depth mechanistic investigations, we found that UL3 upregulates the expression of Smurf2, thereby enhancing the polyubiquitination of MAVS. This modification targets MAVS for proteasomal degradation and subsequent degradation. Notably, the knockdown of Smurf2 rescues MAVS from degradation. Collectively, our findings unveil a previously uncharacterized mechanism by which BoHV-1 UL3 enables BPIV3 to evade the host innate immune surveillance system.
牛疱疹病毒1 (BoHV-1)感染可导致宿主免疫抑制,其被膜蛋白在抑制抗病毒免疫反应中起关键作用。然而,BoHV-1被膜蛋白调控RLR信号通路并影响牛RNA病毒复制的机制尚不清楚。在这里,我们证明BoHV-1被膜蛋白UL3显著抑制BPIV3感染引发的RLR信号反应并促进病毒复制。通过深入的机制研究,我们发现UL3上调Smurf2的表达,从而增强MAVS的多泛素化。这种修饰针对MAVS进行蛋白酶体降解和随后的降解。值得注意的是,Smurf2基因的敲除使MAVS免于退化。总之,我们的发现揭示了BoHV-1 UL3使BPIV3逃避宿主先天免疫监视系统的一种以前未被描述的机制。
{"title":"BoHV-1 UL3 inhibits RLR signaling response by degrading MAVS","authors":"Yanan Xu ,&nbsp;Wenqing Ma ,&nbsp;Hongmei Wang ,&nbsp;Hongbin He","doi":"10.1016/j.vetmic.2025.110791","DOIUrl":"10.1016/j.vetmic.2025.110791","url":null,"abstract":"<div><div>Bovine herpesvirus 1 (BoHV-1) infection can lead to host immunosuppression, and its tegument proteins play a critical role in suppressing antiviral immune responses. However, the mechanisms by which BoHV-1 tegument proteins modulate the RLR signaling pathway and influence the replication of bovine RNA viruses remain poorly understood. Here, we demonstrated that BoHV-1 tegument protein UL3 significantly suppresses BPIV3 infection-trigged RLR signaling response and promotes virus replication. Through in-depth mechanistic investigations, we found that UL3 upregulates the expression of Smurf2, thereby enhancing the polyubiquitination of MAVS. This modification targets MAVS for proteasomal degradation and subsequent degradation. Notably, the knockdown of Smurf2 rescues MAVS from degradation. Collectively, our findings unveil a previously uncharacterized mechanism by which BoHV-1 UL3 enables BPIV3 to evade the host innate immune surveillance system.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"312 ","pages":"Article 110791"},"PeriodicalIF":2.7,"publicationDate":"2025-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145507315","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fatal infection of a novel canine/human reassortant H3N2 influenza A virus in the zoo-housed golden monkeys 一种新型犬/人重组H3N2甲型流感病毒在动物园饲养的金丝猴中致死性感染
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-09 DOI: 10.1016/j.vetmic.2025.110792
Xia Wen , Rong Chen , Yingjun Lv , Jinzhu Geng , Jingjing Guo , Yaru Sun , Aohan Yang , Yuhao Dong , Meirong Li , Changlin Deng , Guodong Wang , Yongjie Liu
Influenza A virus (IAV) is a major pathogen that threatens human and animal health. In June 2022, seven golden monkeys (Rhinopithecus roxellana) developed flu-like symptoms in succession at a zoo in Jiangsu Province, China, with two succumbing to respiratory distress. Histopathological and immunostaining results supported a diagnosis of pulmonary infection with IAV, and a novel H3N2 canine/human reassortant virus, designated A/golden monkey/Jiangsu/1/2022 (Gm-1), was isolated from the lungs of deceased animals. Genomic sequencing revealed that the PB1 gene of Gm-1 exhibited > 97 % identity with human strains, while the remaining 7 segments originated from early local canine H3N2 virus (A/canine/Jiangsu/06/2010, JS06). To determine whether the human-origin PB1 segment conferred a virulence advantage to Gm-1, we reconstructed this reassortant event using reverse genetics, generating two reassortment viruses, rGm-1 (human-origin PB1) and rJS06 (canine-origin control). Mice infected with rGm-1 showed more severe lung pathology and elevated proinflammatory cytokine levels compared to rJS06, indicating that the human-origin PB1 enhanced viral virulence. Further analysis identified a unique cytotoxic motif (68I, 69 L and 70 V) in PB1-F2 protein of Gm-1, absent in JS06, which may contribute to increased pathogenicity. This is the first report confirming IAV infection in golden monkeys. Our finding highlight the importance of enhanced biosecurity surveillance for this endangered species.
甲型流感病毒(IAV)是威胁人类和动物健康的主要病原体。2022年6月,中国江苏省一家动物园的7只金丝猴(Rhinopithecus roxellana)相继出现流感样症状,其中两只死于呼吸窘迫。组织病理学和免疫染色结果支持IAV肺部感染的诊断,并从死亡动物的肺部分离到一种新型H3N2犬/人重组病毒,命名为a /golden monkey/江苏/1/2022 (Gm-1)。基因组测序结果显示,Gm-1的PB1基因与人H3N2病毒株具有>; 97 %的同源性,其余7个片段来源于当地早期犬H3N2病毒(A/canine/Jiangsu/06/2010, JS06)。为了确定人类起源的PB1片段是否赋予Gm-1毒力优势,我们使用反向遗传学方法重建了这一重组事件,产生了两种重组病毒,rGm-1(人类起源的PB1)和rJS06(犬源对照)。与rJS06相比,感染rGm-1的小鼠表现出更严重的肺部病理和更高的促炎细胞因子水平,表明人类来源的PB1增强了病毒的毒力。进一步分析发现Gm-1的PB1-F2蛋白中有一个独特的细胞毒性基序(68I, 69 L和70 V),而JS06中没有,这可能有助于提高致病性。这是确认金丝猴感染禽流感病毒的第一份报告。我们的发现强调了加强对这种濒危物种的生物安全监测的重要性。
{"title":"Fatal infection of a novel canine/human reassortant H3N2 influenza A virus in the zoo-housed golden monkeys","authors":"Xia Wen ,&nbsp;Rong Chen ,&nbsp;Yingjun Lv ,&nbsp;Jinzhu Geng ,&nbsp;Jingjing Guo ,&nbsp;Yaru Sun ,&nbsp;Aohan Yang ,&nbsp;Yuhao Dong ,&nbsp;Meirong Li ,&nbsp;Changlin Deng ,&nbsp;Guodong Wang ,&nbsp;Yongjie Liu","doi":"10.1016/j.vetmic.2025.110792","DOIUrl":"10.1016/j.vetmic.2025.110792","url":null,"abstract":"<div><div>Influenza A virus (IAV) is a major pathogen that threatens human and animal health. In June 2022, seven golden monkeys (<em>Rhinopithecus roxellana</em>) developed flu-like symptoms in succession at a zoo in Jiangsu Province, China, with two succumbing to respiratory distress. Histopathological and immunostaining results supported a diagnosis of pulmonary infection with IAV, and a novel H3N2 canine/human reassortant virus, designated A/golden monkey/Jiangsu/1/2022 (Gm-1), was isolated from the lungs of deceased animals. Genomic sequencing revealed that the PB1 gene of Gm-1 exhibited &gt; 97 % identity with human strains, while the remaining 7 segments originated from early local canine H3N2 virus (A/canine/Jiangsu/06/2010, JS06). To determine whether the human-origin PB1 segment conferred a virulence advantage to Gm-1, we reconstructed this reassortant event using reverse genetics, generating two reassortment viruses, rGm-1 (human-origin PB1) and rJS06 (canine-origin control). Mice infected with rGm-1 showed more severe lung pathology and elevated proinflammatory cytokine levels compared to rJS06, indicating that the human-origin PB1 enhanced viral virulence. Further analysis identified a unique cytotoxic motif (68I, 69 L and 70 V) in PB1-F2 protein of Gm-1, absent in JS06, which may contribute to increased pathogenicity. This is the first report confirming IAV infection in golden monkeys. Our finding highlight the importance of enhanced biosecurity surveillance for this endangered species.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"312 ","pages":"Article 110792"},"PeriodicalIF":2.7,"publicationDate":"2025-11-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145479342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular evaluation of zoonotic bacterial pathogens in high diversity of bats from Brazil 巴西高多样性蝙蝠中人畜共患病细菌病原体的分子评价
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-08 DOI: 10.1016/j.vetmic.2025.110780
Amanda Carvalho Rosado Ferreira , Mariana Fernandes de Moura , Isabela Maki Sato , Anna Cecília Trolesi Reis Borges Costa , Thales Quedi Furian , Marcos Rogério André , Renato Gregorin , Elaine Maria Seles Dorneles
The bats have stood out for their flexibility and adaptation to urban centers; moreover, are described as potential carriers of pathogens, which altogether raises One health concerns. Therefore, the presence of potentially pathogenic bacteria (Salmonella spp., Leptospira spp., Bartonella spp., Yersinia enterocolitica, Staphylococcus aureus, Rickettsia spp., Pasteurella multocida, Coxiella burnetii, and Listeria monocytogenes) in bat species in Brazil was investigated. A total of 283 bat liver samples belonging to 78 bat species from six Brazilian states were retrieved from the Mammal Collection of the Federal University of Lavras. DNA was extracted from liver samples and tested for the presence of the described pathogens using PCR and qPCR techniques. The results showed that 5.65 % of the bats were positive for at least one pathogen, with the most commonly observed being Salmonella spp. and Y. enterocolitica. The positive samples were mainly from Minas Gerais state, with a higher prevalence in males and aerial insectivorous species. These results highlight the importance of monitoring these mammals as potential vectors/reservoirs of zoonotic pathogens and contribute to a broader understanding of the role of bats for public and animal health.
蝙蝠因其灵活性和对城市中心的适应能力而脱颖而出;此外,它们被描述为病原体的潜在携带者,这些都引起了人们对健康的担忧。因此,我们调查了巴西蝙蝠物种中存在的潜在致病性细菌(沙门氏菌、钩端螺旋体、巴尔通体、小肠结肠炎耶尔森菌、金黄色葡萄球菌、立克次体、多杀性巴氏杆菌、伯纳氏杆菌和单核细胞增多李斯特菌)。来自巴西6个州的78种蝙蝠共283份肝脏样本来自拉夫拉斯联邦大学哺乳动物收藏。从肝脏样本中提取DNA,并使用PCR和qPCR技术检测所述病原体的存在。结果显示,5.65 %的蝙蝠至少有一种病原体呈阳性,其中最常见的是沙门氏菌和小肠结肠炎耶夫菌。阳性样本主要来自米纳斯吉拉斯州,以雄性和食虫昆虫为主。这些结果突出了监测这些哺乳动物作为人畜共患病原体的潜在媒介/宿主的重要性,并有助于更广泛地了解蝙蝠在公共和动物卫生方面的作用。
{"title":"Molecular evaluation of zoonotic bacterial pathogens in high diversity of bats from Brazil","authors":"Amanda Carvalho Rosado Ferreira ,&nbsp;Mariana Fernandes de Moura ,&nbsp;Isabela Maki Sato ,&nbsp;Anna Cecília Trolesi Reis Borges Costa ,&nbsp;Thales Quedi Furian ,&nbsp;Marcos Rogério André ,&nbsp;Renato Gregorin ,&nbsp;Elaine Maria Seles Dorneles","doi":"10.1016/j.vetmic.2025.110780","DOIUrl":"10.1016/j.vetmic.2025.110780","url":null,"abstract":"<div><div>The bats have stood out for their flexibility and adaptation to urban centers; moreover, are described as potential carriers of pathogens, which altogether raises One health concerns. Therefore, the presence of potentially pathogenic bacteria (<em>Salmonella</em> spp., <em>Leptospira</em> spp., <em>Bartonella</em> spp., <em>Yersinia enterocolitica</em>, <em>Staphylococcus aureus</em>, <em>Rickettsia</em> spp., <em>Pasteurella multocida</em>, <em>Coxiella burnetii</em>, and <em>Listeria monocytogenes</em>) in bat species in Brazil was investigated. A total of 283 bat liver samples belonging to 78 bat species from six Brazilian states were retrieved from the Mammal Collection of the Federal University of Lavras. DNA was extracted from liver samples and tested for the presence of the described pathogens using PCR and qPCR techniques. The results showed that 5.65 % of the bats were positive for at least one pathogen, with the most commonly observed being <em>Salmonella</em> spp. and <em>Y. enterocolitica</em>. The positive samples were mainly from Minas Gerais state, with a higher prevalence in males and aerial insectivorous species. These results highlight the importance of monitoring these mammals as potential vectors/reservoirs of zoonotic pathogens and contribute to a broader understanding of the role of bats for public and animal health.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"312 ","pages":"Article 110780"},"PeriodicalIF":2.7,"publicationDate":"2025-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145519021","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of transiently produced IgG linear epitopes in Senecavirus A for differentiating infected from vaccinated animals 塞内卡病毒A中瞬时产生IgG线性表位的鉴定用于区分感染动物和接种动物
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-08 DOI: 10.1016/j.vetmic.2025.110789
Lan Yang , Fandan Meng , Hanrong Zhou , Hongwei Ma , Tongqing An , Ning Jiang , Haiwei Wang , Xuehui Cai
Differentiating infected from vaccinated animals (DIVA) is critical for disease eradication and emerging infection surveillance. Senecavirus A (SVA), which causes vesicular disease and neonatal mortality in pigs, is clinically indistinguishable from foot-and-mouth disease virus (FMDV), posing significant economic risks to swine production. Therefore, a reliable DIVA diagnostic method is urgently needed for accurate SVA detection. In this study, we employed the IgG sero-dynamic curves to aid epitope discovery (IsDAED) approach, utilizing peptide microarrays to identify transiently produced IgG (TPI)-associated linear B-cell epitopes on SVA structural proteins. VP2–15 emerged as a dominant linear epitope shared across multiple infected samples, exhibiting a characteristic short-lived antibody response. In addition, sample-specific epitopes VP2–4, VP3–12, and VP1–24 were also identified. Vaccination trials revealed that VP2–15 has a diagnostic window between 7 and 42 days post-boost (dpb), with a DIVA window established beyond 60 dpb. Challenge experiments following inactivated vaccine immunization confirmed that VP2–15 reliably indicates new infections. Virus neutralization test (VNT) and in vitro blocking assays revealed that VP2–15 peptide could partially block the neutralization effect of neutralizing antibodies on SVA. Still, it could not induce neutralizing antibodies in pigs. A diagnostic kit based on a combination of peptide probes (VP2–15, VP2–4, VP3–12, and VP1–24) exhibited high sensitivity (97.9 %) and specificity (90.6 %) in clinical samples, with no cross-reactivity to FMDV. Collectively, the antigenic epitopes identified in this study enable DIVA via TPI detection, offering a valuable tool for SVA surveillance and advancing both control strategies and our understanding of host-virus interactions.
区分受感染动物与接种疫苗动物(DIVA)对于疾病根除和新发感染监测至关重要。引起猪水疱病和新生儿死亡的塞内卡病毒A (SVA)在临床上与口蹄疫病毒(FMDV)难以区分,对养猪生产构成重大经济风险。因此,迫切需要一种可靠的DIVA诊断方法来准确检测SVA。在这项研究中,我们采用IgG血清动态曲线来辅助表位发现(IsDAED)方法,利用肽微阵列识别SVA结构蛋白上瞬时产生的IgG (TPI)相关线性b细胞表位。VP2-15成为多个感染样本共享的显性线性表位,表现出特征性的短暂抗体反应。此外,还鉴定了样品特异性表位VP2-4、VP3-12和VP1-24。疫苗接种试验显示,VP2-15在增强后7至42天(dpb)之间具有诊断窗口,在60 dpb之后建立DIVA窗口。灭活疫苗免疫后的挑战实验证实,VP2-15可靠地指示新的感染。病毒中和试验(VNT)和体外阻断实验表明,VP2-15肽能部分阻断中和抗体对SVA的中和作用。然而,它不能在猪体内诱导出中和抗体。基于多肽探针(VP2-15、VP2-4、VP3-12和VP1-24)组合的诊断试剂盒在临床样品中表现出高灵敏度(97.9% %)和特异性(90.6 %),对FMDV无交叉反应。总的来说,本研究中确定的抗原表位通过TPI检测使DIVA成为可能,为SVA监测提供了有价值的工具,并推进了控制策略和我们对宿主-病毒相互作用的理解。
{"title":"Identification of transiently produced IgG linear epitopes in Senecavirus A for differentiating infected from vaccinated animals","authors":"Lan Yang ,&nbsp;Fandan Meng ,&nbsp;Hanrong Zhou ,&nbsp;Hongwei Ma ,&nbsp;Tongqing An ,&nbsp;Ning Jiang ,&nbsp;Haiwei Wang ,&nbsp;Xuehui Cai","doi":"10.1016/j.vetmic.2025.110789","DOIUrl":"10.1016/j.vetmic.2025.110789","url":null,"abstract":"<div><div>Differentiating infected from vaccinated animals (DIVA) is critical for disease eradication and emerging infection surveillance. Senecavirus A (SVA), which causes vesicular disease and neonatal mortality in pigs, is clinically indistinguishable from foot-and-mouth disease virus (FMDV), posing significant economic risks to swine production. Therefore, a reliable DIVA diagnostic method is urgently needed for accurate SVA detection. In this study, we employed the IgG sero-dynamic curves to aid epitope discovery (IsDAED) approach, utilizing peptide microarrays to identify transiently produced IgG (TPI)-associated linear B-cell epitopes on SVA structural proteins. VP2–15 emerged as a dominant linear epitope shared across multiple infected samples, exhibiting a characteristic short-lived antibody response. In addition, sample-specific epitopes VP2–4, VP3–12, and VP1–24 were also identified. Vaccination trials revealed that VP2–15 has a diagnostic window between 7 and 42 days post-boost (dpb), with a DIVA window established beyond 60 dpb. Challenge experiments following inactivated vaccine immunization confirmed that VP2–15 reliably indicates new infections. Virus neutralization test (VNT) and <em>in vitro</em> blocking assays revealed that VP2–15 peptide could partially block the neutralization effect of neutralizing antibodies on SVA. Still, it could not induce neutralizing antibodies in pigs. A diagnostic kit based on a combination of peptide probes (VP2–15, VP2–4, VP3–12, and VP1–24) exhibited high sensitivity (97.9 %) and specificity (90.6 %) in clinical samples, with no cross-reactivity to FMDV. Collectively, the antigenic epitopes identified in this study enable DIVA via TPI detection, offering a valuable tool for SVA surveillance and advancing both control strategies and our understanding of host-virus interactions.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"312 ","pages":"Article 110789"},"PeriodicalIF":2.7,"publicationDate":"2025-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145479341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Minimum inhibitory concentrations of sulfonamides and trimethoprim for veterinary pathogens: New data for old antibiotics 磺胺类药物和甲氧苄啶对兽医病原体的最低抑制浓度:旧抗生素的新数据。
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-08 DOI: 10.1016/j.vetmic.2025.110784
Nadine Ruchti , Aude A. Ferran , Andrew Mead , Ludovic Pelligand , Alexis Viel , Marine Boulanger , Gudrun Overesch
Targeted interpretation of antimicrobial susceptibility testing (AST) raw data is highly dependent on the availability of appropriate interpretative criteria, such as clinical breakpoints (CBP) or at least epidemiological cut-off values (ECOFF) as potential surrogates for CBPs. However, these criteria have not yet been defined for important first line antibiotics used to treat infections with veterinary pathogens. Therefore, the aims of our study were, (1) to produce minimum inhibitory concentration (MIC) distributions for important veterinary pathogens with trimethoprim - sulfamethoxazole 1:19 combination and with sulfamethoxazole, sulfadiazine, sulfadimethoxine, and trimethoprim alone, furthermore, (2) to estimate the proportion of microbiological resistance to sulfonamides and trimethoprim in the selected bacterial species, and lastly, (3) to propose presumptive quality control (QC) ranges for potential QC strain candidates. MIC determination was carried out by broth microdilution according to the recommendations of the European committee on antimicrobial susceptibility testing (EUCAST). For the majority of the veterinary pathogens analysed, MIC distributions for trimethoprim - sulfamethoxazole 1:19, sulfamethoxazole, and trimethoprim met the EUCAST criteria and presumptive ECOFFs could be proposed. In contrast, for sulfadiazine and sulfadimethoxine the tested concentration ranges (> 256 mg/L) were too low for generating data acceptable for estimation of presumptive ECOFFs. The presented MIC distributions form the basis for an inter-laboratory study with the goal to generate aggregated MIC data to be submitted to the EUCAST steering committee for setting missing ECOFFs for sulfonamides and trimethoprim and thereby supporting the use of these first-line antibiotics.
抗菌药物敏感性试验(AST)原始数据的靶向解释高度依赖于适当解释标准的可用性,例如临床断点(CBP)或至少流行病学临界值(ECOFF)作为CBPs的潜在替代品。然而,对于用于治疗兽医病原体感染的重要一线抗生素,这些标准尚未确定。因此,本研究的目的是:(1)获得甲氧苄啶-磺胺甲恶唑1:19联合用药以及甲氧苄唑、磺胺嘧啶、磺胺二甲氧嘧啶和甲氧苄啶单独用药对重要兽医病原菌的最低抑菌浓度(MIC)分布;(2)估计所选细菌对磺胺类药物和甲氧苄啶的微生物耐药比例;(3)对潜在的QC候选菌株提出假定的质量控制(QC)范围。MIC测定采用微量肉汤稀释法,按照欧洲药敏试验委员会(EUCAST)的建议进行。对于分析的大多数兽医病原体,甲氧苄啶-磺胺甲恶唑1:19、磺胺甲恶唑和甲氧苄啶的MIC分布符合EUCAST标准,可以提出推定ecoff。相比之下,磺胺嘧啶和磺胺二甲氧嘧啶的测试浓度范围(> - 256 mg/L)太低,无法产生可接受的数据来估计假定的ecoff。所提出的MIC分布构成了一项实验室间研究的基础,其目标是生成汇总的MIC数据,提交给EUCAST指导委员会,以确定磺胺类药物和甲氧苄啶缺失的ECOFFs,从而支持这些一线抗生素的使用。
{"title":"Minimum inhibitory concentrations of sulfonamides and trimethoprim for veterinary pathogens: New data for old antibiotics","authors":"Nadine Ruchti ,&nbsp;Aude A. Ferran ,&nbsp;Andrew Mead ,&nbsp;Ludovic Pelligand ,&nbsp;Alexis Viel ,&nbsp;Marine Boulanger ,&nbsp;Gudrun Overesch","doi":"10.1016/j.vetmic.2025.110784","DOIUrl":"10.1016/j.vetmic.2025.110784","url":null,"abstract":"<div><div>Targeted interpretation of antimicrobial susceptibility testing (AST) raw data is highly dependent on the availability of appropriate interpretative criteria, such as clinical breakpoints (CBP) or at least epidemiological cut-off values (ECOFF) as potential surrogates for CBPs. However, these criteria have not yet been defined for important first line antibiotics used to treat infections with veterinary pathogens. Therefore, the aims of our study were, (1) to produce minimum inhibitory concentration (MIC) distributions for important veterinary pathogens with trimethoprim - sulfamethoxazole 1:19 combination and with sulfamethoxazole, sulfadiazine, sulfadimethoxine, and trimethoprim alone, furthermore, (2) to estimate the proportion of microbiological resistance to sulfonamides and trimethoprim in the selected bacterial species, and lastly, (3) to propose presumptive quality control (QC) ranges for potential QC strain candidates. MIC determination was carried out by broth microdilution according to the recommendations of the European committee on antimicrobial susceptibility testing (EUCAST). For the majority of the veterinary pathogens analysed, MIC distributions for trimethoprim - sulfamethoxazole 1:19, sulfamethoxazole, and trimethoprim met the EUCAST criteria and presumptive ECOFFs could be proposed. In contrast, for sulfadiazine and sulfadimethoxine the tested concentration ranges (&gt; 256 mg/L) were too low for generating data acceptable for estimation of presumptive ECOFFs. The presented MIC distributions form the basis for an inter-laboratory study with the goal to generate aggregated MIC data to be submitted to the EUCAST steering committee for setting missing ECOFFs for sulfonamides and trimethoprim and thereby supporting the use of these first-line antibiotics.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"312 ","pages":"Article 110784"},"PeriodicalIF":2.7,"publicationDate":"2025-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145606036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unveiling the Presence of Coxiella-like bacteria in Rhipicephalus microplus Ticks from Punjab, North India: A 16S rRNA metagenomic study 揭示印度北部旁遮普省微型鼻头蜱中存在柯希拉样细菌:16S rRNA宏基因组研究
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-07 DOI: 10.1016/j.vetmic.2025.110783
Vikas Sharma , Shriya Goel , Kamlesh Bisht , Taruna Kaura , Salony Verma , Abhishek Mewara , Gagandeep Singh Grover , Manisha Biswal
In this study, using 16S rRNA gene-based metagenomics, we aimed to determine the presence of infectious bacteria in the ticks collected from Punjab state in north India. Tick samples were collected from the domesticated animals from the Patiala, Ropar, and Mohali districts of Punjab, India from February 2022- April 2022. DNA was extracted, and the library was prepared by targeting the V3–V4 hypervariable region of the 16S rRNA gene. The sequencing was conducted in Illumina using the 300 bp paired-end chemistry. Eight tick samples were analyzed from the Patiala, Ropar and Mohali districts of Punjab, India, revealing a diverse range of bacterial species within the tick microbiome. Seven out of eight samples were found to harbour Coxiella-like bacteria (46–181,607 reads; closely related to C. burnetii based on 16S rRNA [V3–V4] sequence similarity), indicating their abundance in the tick population. Furthermore, the analysis uncovered the presence of other pathogenic bacterial genera, including Staphylococcus, Streptococcus, Corynebacterium, Enterococcus, Pseudomonas, Bordetella, and Micrococcus in the tick microbiome, highlighting the abundance and diversity of infectious organisms within ticks. 16S rRNA gene-based metagenomics enables valuable insights into infectious agents in disease-transmitting vectors. Coxiella-like bacteria were found to be predominant bacterial species in the tick microbiomes in this study. The public health significance of this finding in animals and humans needs to be explored in this region. However, as 16S rRNA sequencing offers limited resolution for distinguishing closely related taxa, further confirmation using additional loci or whole-genome sequencing is warranted.
本研究采用基于16S rRNA基因的宏基因组学方法,对采集自印度北部旁遮普邦的蜱虫进行感染性细菌的检测。从2022年2月至2022年4月从印度旁遮普省的帕蒂亚拉、罗帕尔和莫哈里地区的家畜身上采集蜱虫样本。提取DNA,针对16S rRNA基因的V3-V4高变区制备文库。测序在Illumina中使用300 bp对端化学进行。对来自印度旁遮普省帕蒂亚拉、罗帕尔和莫哈里地区的8个蜱虫样本进行了分析,揭示了蜱虫微生物组中的多种细菌种类。8份样本中有7份含有科西拉样细菌(46-181,607份,基于16S rRNA [V3-V4]序列相似性,与伯纳氏蜱密切相关),表明其在蜱虫种群中的丰度。此外,分析还发现蜱虫微生物群中存在其他致病性细菌属,包括葡萄球菌、链球菌、棒状杆菌、肠球菌、假单胞菌、博德特拉菌和微球菌,突出了蜱虫体内感染性生物的丰富性和多样性。基于16S rRNA基因的宏基因组学能够对疾病传播载体中的感染因子提供有价值的见解。本研究发现,科希拉样细菌是蜱虫微生物群中的优势菌种。这一发现对动物和人类的公共卫生意义需要在该地区进行探索。然而,由于16S rRNA测序在区分密切相关的分类群方面提供了有限的分辨率,因此需要使用额外的位点或全基因组测序来进一步确认。
{"title":"Unveiling the Presence of Coxiella-like bacteria in Rhipicephalus microplus Ticks from Punjab, North India: A 16S rRNA metagenomic study","authors":"Vikas Sharma ,&nbsp;Shriya Goel ,&nbsp;Kamlesh Bisht ,&nbsp;Taruna Kaura ,&nbsp;Salony Verma ,&nbsp;Abhishek Mewara ,&nbsp;Gagandeep Singh Grover ,&nbsp;Manisha Biswal","doi":"10.1016/j.vetmic.2025.110783","DOIUrl":"10.1016/j.vetmic.2025.110783","url":null,"abstract":"<div><div>In this study, using 16S rRNA gene-based metagenomics, we aimed to determine the presence of infectious bacteria in the ticks collected from Punjab state in north India. Tick samples were collected from the domesticated animals from the Patiala, Ropar, and Mohali districts of Punjab, India from February 2022- April 2022<strong>.</strong> DNA was extracted, and the library was prepared by targeting the V3–V4 hypervariable region of the 16S rRNA gene. The sequencing was conducted in Illumina using the 300 bp paired-end chemistry. Eight tick samples were analyzed from the Patiala, Ropar and Mohali districts of Punjab, India, revealing a diverse range of bacterial species within the tick microbiome. Seven out of eight samples were found to harbour <em>Coxiella</em>-like bacteria (46–181,607 reads; closely related to <em>C. burnetii</em> based on 16S rRNA [V3–V4] sequence similarity), indicating their abundance in the tick population. Furthermore, the analysis uncovered the presence of other pathogenic bacterial genera, including <em>Staphylococcus, Streptococcus</em>, <em>Corynebacterium</em>, <em>Enterococcus</em>, <em>Pseudomonas</em>, <em>Bordetella</em>, and <em>Micrococcus</em> in the tick microbiome, highlighting the abundance and diversity of infectious organisms within ticks. 16S rRNA gene-based metagenomics enables valuable insights into infectious agents in disease-transmitting vectors. <em>Coxiella</em>-like bacteria were found to be predominant bacterial species in the tick microbiomes in this study. The public health significance of this finding in animals and humans needs to be explored in this region. However, as 16S rRNA sequencing offers limited resolution for distinguishing closely related taxa, further confirmation using additional loci or whole-genome sequencing is warranted.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"312 ","pages":"Article 110783"},"PeriodicalIF":2.7,"publicationDate":"2025-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145514301","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Serosurveillance of Crimean-Congo hemorrhagic fever virus in zoo animals, Spain, 2007–2024 2007-2024年西班牙动物园动物克里米亚-刚果出血热病毒血清监测
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-07 DOI: 10.1016/j.vetmic.2025.110787
Adrián Beato-Benítez , Moisés Gonzálvez , Kerstin Fischer , Eva Martínez-Nevado , Benjamin Gutjahr , Ricardo Navarro-López , Martin H. Groschup , Mario Torro , David Cano-Terriza , Ignacio García-Bocanegra
Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne zoonotic pathogen of significant public health concern worldwide. In Spain, CCHFV infection is considered an emerging and underdiagnosed disease. In this country, wildlife exhibits high levels of CCHFV exposure, and 20 autochthonous human cases, including six fatalities, have been officially reported in recent years. Zoos represent unique epidemiological interfaces, housing a high diversity of wildlife species in close contact with humans and serving as habitats for pathogens and tick communities. However, information on the role of captive wildlife inhabiting urban and peri-urban areas in the epidemiology of CCHFV remains limited. The aim of the present study was to evaluate the circulation of CCHFV in zoo-housed wildlife in Spain. From 2007 and 2024, serum samples from 956 zoo-housed mammals covering 173 species and 38 families were collected across 19 zoos and wildlife rescue centers in Spain through intermittent sampling. Anti-CCHFV antibodies were detected by ELISA in two white rhinoceroses (Ceratotherium simum) and one dromedary camel (Camelus dromedarius) (0.3 %; 95 % CI 0.0–0.7) sampled in the same zoo in central Spain. Virus neutralization test was performed on ELISA-positive samples, confirming the presence of specific neutralizing antibodies in one white rhinoceros. To the best of the authors’ knowledge, this is the first CCHFV surveillance in zoo-housed animals worldwide. Our results suggest low and geographically localized seropositivity for CCHFV. Including CCHFV monitoring in surveillance programs in zoos could provide valuable insights into the virus’s epidemiology in anthropogenic environments, particularly in high-risk areas.
克里米亚-刚果出血热病毒(CCHFV)是一种蜱传人畜共患病原体,在世界范围内引起重大公共卫生关注。在西班牙,CCHFV感染被认为是一种新出现的未被诊断的疾病。在这个国家,野生动物暴露于CCHFV的水平很高,近年来已正式报告了20例本地人类病例,其中6例死亡。动物园代表着独特的流行病学界面,拥有与人类密切接触的多种野生动物物种,并成为病原体和蜱虫群落的栖息地。然而,关于居住在城市和城郊地区的圈养野生动物在CCHFV流行病学中的作用的信息仍然有限。本研究的目的是评估CCHFV在西班牙动物园野生动物中的传播情况。从2007年到2024年,通过间歇性采样,从西班牙19个动物园和野生动物救援中心收集了956种动物园饲养的哺乳动物的血清样本,涵盖173个物种和38个科。ELISA法在西班牙中部同一动物园采集的2头白犀牛(Ceratotherium simum)和1头单峰骆驼(Camelus dromedarius)(0.3 %;95 % CI 0.0 ~ 0.7)中检测到cchfv抗体。对elisa阳性样品进行病毒中和试验,证实在一头白犀牛中存在特异性中和抗体。据作者所知,这是世界上首次对动物园饲养的动物进行CCHFV监测。我们的研究结果表明,CCHFV血清阳性率低且地理定位。在动物园的监测项目中包括CCHFV监测,可以为病毒在人为环境中的流行病学提供有价值的见解,特别是在高风险地区。
{"title":"Serosurveillance of Crimean-Congo hemorrhagic fever virus in zoo animals, Spain, 2007–2024","authors":"Adrián Beato-Benítez ,&nbsp;Moisés Gonzálvez ,&nbsp;Kerstin Fischer ,&nbsp;Eva Martínez-Nevado ,&nbsp;Benjamin Gutjahr ,&nbsp;Ricardo Navarro-López ,&nbsp;Martin H. Groschup ,&nbsp;Mario Torro ,&nbsp;David Cano-Terriza ,&nbsp;Ignacio García-Bocanegra","doi":"10.1016/j.vetmic.2025.110787","DOIUrl":"10.1016/j.vetmic.2025.110787","url":null,"abstract":"<div><div>Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne zoonotic pathogen of significant public health concern worldwide. In Spain, CCHFV infection is considered an emerging and underdiagnosed disease. In this country, wildlife exhibits high levels of CCHFV exposure, and 20 autochthonous human cases, including six fatalities, have been officially reported in recent years. Zoos represent unique epidemiological interfaces, housing a high diversity of wildlife species in close contact with humans and serving as habitats for pathogens and tick communities. However, information on the role of captive wildlife inhabiting urban and peri-urban areas in the epidemiology of CCHFV remains limited. The aim of the present study was to evaluate the circulation of CCHFV in zoo-housed wildlife in Spain. From 2007 and 2024, serum samples from 956 zoo-housed mammals covering 173 species and 38 families were collected across 19 zoos and wildlife rescue centers in Spain through intermittent sampling. Anti-CCHFV antibodies were detected by ELISA in two white rhinoceroses (<em>Ceratotherium simum</em>) and one dromedary camel (<em>Camelus dromedarius</em>) (0.3 %; 95 % CI 0.0–0.7) sampled in the same zoo in central Spain. Virus neutralization test was performed on ELISA-positive samples, confirming the presence of specific neutralizing antibodies in one white rhinoceros. To the best of the authors’ knowledge, this is the first CCHFV surveillance in zoo-housed animals worldwide. Our results suggest low and geographically localized seropositivity for CCHFV. Including CCHFV monitoring in surveillance programs in zoos could provide valuable insights into the virus’s epidemiology in anthropogenic environments, particularly in high-risk areas.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"312 ","pages":"Article 110787"},"PeriodicalIF":2.7,"publicationDate":"2025-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145514159","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial resistance, genomic, and public health insights into Enterococcus spp. from Australian cattle 澳大利亚牛肠球菌的抗菌素耐药性、基因组学和公共卫生见解
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-07 DOI: 10.1016/j.vetmic.2025.110788
Rebecca Abraham , Shafi Sahibzada , Terence Lee , David Jordan , Kate McMillan , Glen Mellor , Lesley Duffy , Kittitat Lugsomya , Mark O'Dea , Sam Abraham , Robert Barlow

Objectives

Enterococci are opportunistic, sometimes life-threatening pathogens with increasing antimicrobial resistance, particularly among clinical human isolates in Australia. While recent studies have ruled out pigs and chickens as major reservoirs of resistant enterococci, the role of cattle remains unclear. This study examines the antimicrobial resistance (AMR) profiles of enterococci from Australian cattle and explores the phylogenetic relationship of bovine E. faecium with isolates from other livestock and human sepsis cases.

Methods

A total of 1001 bovine faecal samples were tested, yielding E. faecium (n = 343), E. faecalis (n = 92), and E. hirae (n = 284). Minimum inhibitory concentration assays were conducted against 15 antimicrobials. A subset of 67 isolates underwent whole genome sequencing (WGS).

Results

Most isolates were wild-type to all tested antimicrobials. Resistance was most common to erythromycin in E. faecium (18.7 %), daptomycin in E. faecalis (12.1 %), and tetracycline in E. hirae (13.3 %). A single E. faecalis isolate was non-wild-type to vancomycin, and nine isolates (E. faecium n = 4, E. faecalis n = 2, E. hirae n = 3) showed linezolid resistance. However, WGS did not detect known resistance genes or mutations for vancomycin or linezolid. Phylogenetic analysis revealed that bovine E. faecium clustered with other livestock isolates and vancomycin-negative human isolates.

Conclusion

Antimicrobial resistance among enterococci from Australian cattle is low. These strains are genetically distinct from vancomycin-resistant E. faecium circulating in hospitals, suggesting that cattle are not a significant source of clinically relevant AMR enterococci in Australia.
目的肠球菌是一种机会性的,有时危及生命的病原体,具有日益增加的抗菌素耐药性,特别是在澳大利亚的临床人类分离株中。虽然最近的研究已经排除了猪和鸡是耐药肠球菌的主要宿主的可能性,但牛的作用仍不清楚。本研究检测了澳大利亚牛肠球菌的抗菌素耐药性(AMR),并探讨了牛粪肠球菌与其他牲畜和人类败血症病例分离株的系统发育关系。方法对1001份牛粪便样本进行检测,得到粪肠杆菌(n = 343)、粪肠杆菌(n = 92)和hirae肠杆菌(n = 284)。对15种抗菌素进行最低抑菌浓度测定。67株分离物进行了全基因组测序(WGS)。结果大多数分离株对所有抗菌药物均为野生型。对红霉素耐药最多的是粪肠杆菌(18.7% %)、达托霉素耐药最多的是粪肠杆菌(12.1% %)和黑肠杆菌(13.3% %)。1株粪肠球菌对万古霉素呈非野生型,9株菌株(粪肠球菌 = 4,粪肠球菌 = 2,希雷肠球菌 = 3)对利奈唑胺耐药。然而,WGS没有检测到万古霉素或利奈唑胺的已知耐药基因或突变。系统发育分析显示,牛粪肠杆菌与其他家畜分离株和万古霉素阴性的人分离株聚集在一起。结论澳大利亚牛肠球菌耐药程度较低。这些菌株在遗传上不同于医院中流传的耐万古霉素肠球菌,这表明在澳大利亚,牛并不是临床相关的AMR肠球菌的重要来源。
{"title":"Antimicrobial resistance, genomic, and public health insights into Enterococcus spp. from Australian cattle","authors":"Rebecca Abraham ,&nbsp;Shafi Sahibzada ,&nbsp;Terence Lee ,&nbsp;David Jordan ,&nbsp;Kate McMillan ,&nbsp;Glen Mellor ,&nbsp;Lesley Duffy ,&nbsp;Kittitat Lugsomya ,&nbsp;Mark O'Dea ,&nbsp;Sam Abraham ,&nbsp;Robert Barlow","doi":"10.1016/j.vetmic.2025.110788","DOIUrl":"10.1016/j.vetmic.2025.110788","url":null,"abstract":"<div><h3>Objectives</h3><div>Enterococci are opportunistic, sometimes life-threatening pathogens with increasing antimicrobial resistance, particularly among clinical human isolates in Australia. While recent studies have ruled out pigs and chickens as major reservoirs of resistant enterococci, the role of cattle remains unclear. This study examines the antimicrobial resistance (AMR) profiles of enterococci from Australian cattle and explores the phylogenetic relationship of bovine <em>E. faecium</em> with isolates from other livestock and human sepsis cases.</div></div><div><h3>Methods</h3><div>A total of 1001 bovine faecal samples were tested, yielding <em>E. faecium</em> (n = 343), <em>E. faecalis</em> (n = 92), and <em>E. hirae</em> (n = 284). Minimum inhibitory concentration assays were conducted against 15 antimicrobials. A subset of 67 isolates underwent whole genome sequencing (WGS).</div></div><div><h3>Results</h3><div>Most isolates were wild-type to all tested antimicrobials. Resistance was most common to erythromycin in <em>E. faecium</em> (18.7 %), daptomycin in <em>E. faecalis</em> (12.1 %), and tetracycline in <em>E. hirae</em> (13.3 %). A single <em>E. faecalis</em> isolate was non-wild-type to vancomycin, and nine isolates (<em>E. faecium</em> n = 4, <em>E. faecalis</em> n = 2, <em>E. hirae</em> n = 3) showed linezolid resistance. However, WGS did not detect known resistance genes or mutations for vancomycin or linezolid. Phylogenetic analysis revealed that bovine <em>E. faecium</em> clustered with other livestock isolates and vancomycin-negative human isolates.</div></div><div><h3>Conclusion</h3><div>Antimicrobial resistance among enterococci from Australian cattle is low. These strains are genetically distinct from vancomycin-resistant <em>E. faecium</em> circulating in hospitals, suggesting that cattle are not a significant source of clinically relevant AMR enterococci in Australia.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"312 ","pages":"Article 110788"},"PeriodicalIF":2.7,"publicationDate":"2025-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145615697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Decoding host immune response: circRNAs in Klebsiella variicola-infected chicken spleens 解码宿主免疫反应:水痘克雷伯菌感染鸡脾脏中的环状rna
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-07 DOI: 10.1016/j.vetmic.2025.110786
Lei Yin , Xuehuai Shen , Dongdong Yin , Hongyan Hou , Jieru Wang , Yayun Liu , Ruihong Zhao , Yin Dai , Kezong Qi , Xiaocheng Pan
A newly discovered pathogen, Klebsiella variicola (K. variicola), poses a risk to food safety due to its zoonotic potential. Circular RNAs (circRNAs) are non-coding RNAs that have been shown to have important functions in the regulation of the host response to infection by a pathogen, but whether circRNAs participate in K. variicola infection and host response remains unclear. This study used high throughput sequencing to analyze the transcriptional profiles of host circRNAs in chicken spleens in response to K. variicola infection. A total of 53 circRNAs were significantly altered, including 22 upregulated and 31 downregulated circRNAs (p < 0.05). The biological function of the differentially expressed (DE) circRNAs was determined by Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analyses. It was found that the host genes of DE circRNAs were principally involved in the innate immune and inflammatory defense responses to the bacterium. Coupled with previous mRNA and microRNA sequencing data, a competing endogenous RNA analysis was performed and we first revealed two critical ceRNA axes, circRNA_4562/miR-3537/CARD11 and circRNA_0366/miR-129–5p/ITPR2, where circRNAs act as molecular sponges to relieve miRNA-mediated repression of CARD11 (caspase recruitment domain-containing protein 11) and ITPR2 (inositol 1,4,5-trisphosphate receptor type 2), activating innate immune signaling to combat infection. These findings broaden functional insights into circRNAs in bacterial-host interplay and establish novel molecular targets for deciphering avian immune defense against K. variicola, advancing ncRNA-based anti-infective strategies.
一种新发现的病原体,水痘克雷伯氏菌(k.v ariicola),由于其人畜共患的潜力,对食品安全构成威胁。环状rna (circRNAs)是一种非编码rna,已被证明在调节宿主对病原体感染的反应中具有重要功能,但环状rna是否参与天花感染和宿主反应尚不清楚。本研究利用高通量测序技术分析了鸡脾脏中宿主环状rna对天花感染的转录谱。共有53个circrna发生显著改变,其中22个circrna上调,31个circrna下调(p <; 0.05)。通过基因本体(GO)和京都基因基因组百科全书(KEGG)途径富集分析确定了差异表达(DE)环状rna的生物学功能。我们发现DE环状rna的宿主基因主要参与了对细菌的先天免疫和炎症防御反应。结合之前的mRNA和microRNA测序数据,进行了竞争的内源性RNA分析,我们首先揭示了两个关键的ceRNA轴,circRNA_4562/miR-3537/CARD11和circRNA_0366/ miR-129-5p /ITPR2,其中circRNAs作为分子海绵,缓解mirna介导的CARD11 (caspase募集结构域蛋白11)和ITPR2(肌醇1,4,5-三磷酸受体2)的抑制,激活先天免疫信号以对抗感染。这些发现拓宽了环状rna在细菌-宿主相互作用中的功能见解,并建立了新的分子靶点来破译鸡对天花的免疫防御,推进了基于ncrna的抗感染策略。
{"title":"Decoding host immune response: circRNAs in Klebsiella variicola-infected chicken spleens","authors":"Lei Yin ,&nbsp;Xuehuai Shen ,&nbsp;Dongdong Yin ,&nbsp;Hongyan Hou ,&nbsp;Jieru Wang ,&nbsp;Yayun Liu ,&nbsp;Ruihong Zhao ,&nbsp;Yin Dai ,&nbsp;Kezong Qi ,&nbsp;Xiaocheng Pan","doi":"10.1016/j.vetmic.2025.110786","DOIUrl":"10.1016/j.vetmic.2025.110786","url":null,"abstract":"<div><div>A newly discovered pathogen, <em>Klebsiella variicola</em> (<em>K</em>. <em>variicola</em>), poses a risk to food safety due to its zoonotic potential. Circular RNAs (circRNAs) are non-coding RNAs that have been shown to have important functions in the regulation of the host response to infection by a pathogen, but whether circRNAs participate in <em>K</em>. <em>variicola</em> infection and host response remains unclear. This study used high throughput sequencing to analyze the transcriptional profiles of host circRNAs in chicken spleens in response to <em>K</em>. <em>variicola</em> infection. A total of 53 circRNAs were significantly altered, including 22 upregulated and 31 downregulated circRNAs (<em>p</em> &lt; 0.05). The biological function of the differentially expressed (DE) circRNAs was determined by Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analyses. It was found that the host genes of DE circRNAs were principally involved in the innate immune and inflammatory defense responses to the bacterium. Coupled with previous mRNA and microRNA sequencing data, a competing endogenous RNA analysis was performed and we first revealed two critical ceRNA axes, circRNA_4562/miR-3537/CARD11 and circRNA_0366/miR-129–5p/ITPR2, where circRNAs act as molecular sponges to relieve miRNA-mediated repression of CARD11 (caspase recruitment domain-containing protein 11) and ITPR2 (inositol 1,4,5-trisphosphate receptor type 2), activating innate immune signaling to combat infection. These findings broaden functional insights into circRNAs in bacterial-host interplay and establish novel molecular targets for deciphering avian immune defense against <em>K. variicola</em>, advancing ncRNA-based anti-infective strategies.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"311 ","pages":"Article 110786"},"PeriodicalIF":2.7,"publicationDate":"2025-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145466850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial resistance profiling and molecular typing of beta-2 toxin-producing Clostridium perfringens from pig-derived isolates in Xinjiang, China 新疆猪源产β -2毒素产气荚膜梭菌的耐药性分析和分子分型
IF 2.7 2区 农林科学 Q3 MICROBIOLOGY Pub Date : 2025-11-06 DOI: 10.1016/j.vetmic.2025.110785
Wang zekun , Ma wenxuan , Yang Bin , Yu yuetong , Ma zhiyuan , Zhao aiyun , Qi meng , Li jing
In this study, a total of 322 pig fecal samples were collected from various regions of Xinjiang, from which 62 Clostridium perfringens isolates were identified using both morphological and molecular methods, yielding an isolation rate of 19.3 % (62/322). All isolates were classified as type A, with 38.7 % (24/62) carrying the cpb2 gene encoding the β2-toxin. The antimicrobial susceptibility testing showed that the isolates exhibited the highest resistance rate to chloramphenicol (a phenicol), at 77.4 % (48/62). 82.3 %(51/62) displayed multidrug resistance. Molecular analysis of resistance genes revealed that lnu(P) had the highest detection rate (51.6 %, 32/62), followed by tetB(P) (50.0 %, 31/62), tetA(P) (45.2 %, 28/62), and aac(6′)-aph(2'') (45.2 %, 28/62). Among the 24 cpb2-positive C. perfringens isolates, multi-locus sequence typing (MLST) identified eight distinct sequence types (STs), including four novel STs: ST892, ST893, ST895, and ST896. ST893 was the most prevalent, accounting for 37.5 % (9/24) of cpb2-positive strains. This study provides the first comprehensive characterization of antimicrobial resistance profiles and molecular types of porcine-origin C. perfringens in Xinjiang. The identification of novel STs and resistance gene distributions offers important information for guiding regional surveillance and control strategies.
本研究从新疆不同地区收集了322份猪粪便样本,通过形态学和分子方法鉴定出62株产气荚膜梭菌,分离率为19.3 %(62/322)。所有分离株均为A型,38.7 %(24/62)携带编码β2毒素的cpb2基因。药敏试验结果显示,菌株对氯霉素的耐药率最高,为77.4% %(48/62)。82.3 %(51/62)为多药耐药;耐药基因分子分析结果显示,lnu(P)检出率最高(51.6 %,32/62),其次是tetB(P)(50.0 %,31/62)、tetA(P)(45.2 %,28/62)和aac(6′)-aph(2′)(45.2 %,28/62)。在24株cpb2阳性产气荚膜荚膜菌分离株中,多位点序列分型(MLST)鉴定出8种不同的序列类型,包括4种新的序列类型:ST892、ST893、ST895和ST896。cpb2阳性菌株中以ST893最为常见,占37.5% %(9/24)。本研究首次全面表征了新疆产气荚膜荚膜杆菌的耐药谱和分子类型。鉴定新的STs和抗性基因分布为指导区域监测和控制策略提供了重要信息。
{"title":"Antimicrobial resistance profiling and molecular typing of beta-2 toxin-producing Clostridium perfringens from pig-derived isolates in Xinjiang, China","authors":"Wang zekun ,&nbsp;Ma wenxuan ,&nbsp;Yang Bin ,&nbsp;Yu yuetong ,&nbsp;Ma zhiyuan ,&nbsp;Zhao aiyun ,&nbsp;Qi meng ,&nbsp;Li jing","doi":"10.1016/j.vetmic.2025.110785","DOIUrl":"10.1016/j.vetmic.2025.110785","url":null,"abstract":"<div><div>In this study, a total of 322 pig fecal samples were collected from various regions of Xinjiang, from which 62 <em>Clostridium perfringens</em> isolates were identified using both morphological and molecular methods, yielding an isolation rate of 19.3 % (62/322). All isolates were classified as type A, with 38.7 % (24/62) carrying the <em>cpb2</em> gene encoding the β2-toxin. The antimicrobial susceptibility testing showed that the isolates exhibited the highest resistance rate to chloramphenicol (a phenicol), at 77.4 % (48/62). 82.3 %(51/62) displayed multidrug resistance. Molecular analysis of resistance genes revealed that <em>lnu(P)</em> had the highest detection rate (51.6 %, 32/62), followed by <em>tetB(P)</em> (50.0 %, 31/62), <em>tetA(P)</em> (45.2 %, 28/62), and <em>aac(6′)-aph(2'')</em> (45.2 %, 28/62). Among the 24 <em>cpb2</em>-positive <em>C. perfringens</em> isolates, multi-locus sequence typing (MLST) identified eight distinct sequence types (STs), including four novel STs: ST892, ST893, ST895, and ST896. ST893 was the most prevalent, accounting for 37.5 % (9/24) of <em>cpb2</em>-positive strains. This study provides the first comprehensive characterization of antimicrobial resistance profiles and molecular types of porcine-origin <em>C. perfringens</em> in Xinjiang. The identification of novel STs and resistance gene distributions offers important information for guiding regional surveillance and control strategies.</div></div>","PeriodicalId":23551,"journal":{"name":"Veterinary microbiology","volume":"312 ","pages":"Article 110785"},"PeriodicalIF":2.7,"publicationDate":"2025-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145834814","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Veterinary microbiology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1