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Identification of polymorphism in the goat callipyge gene (CLPG) and its associations with production traits 山羊callipyge基因多态性的鉴定及其与生产性状的关系
Pub Date : 2009-12-01 DOI: 10.1017/S1479236209990544
Cao Gui-ling, L. Biao, Tang Hui, Tang Pei-rong, W. Jianmin, Jiang Yunliang
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引用次数: 1
Isolation, mapping and application of a repetitive DNA sequence in wheat (Triticum aestivum) A and B genomes. 小麦(Triticum aestivum) a和B基因组重复DNA序列的分离、定位和应用。
Pub Date : 2009-12-01 DOI: 10.1017/S1479236209990295
Zeng Zi-xian, Yang Zu-jun, Liu Cheng, Hu Li-jun, Ren Zheng-long
Simple sequence repeat (SSR) analysis was performed on five Secale species, four Triticum species and a Triticale line Fenzhi-1 using 102 pairs of microsatellite primers. A 387-bp specific DNA fragment FZ387 (GenBank accession no. EF179137) was obtained from the Triticale Fenzhi-1 with primer Xgwm614, without amplification in Secale. NCBI BLAST revealed that this FZ387 sequence had 94% and 95% similarity to part of the Gypsy Ty3-LTR retrotransposon Fatima in Triticum monoccocum (AY485644) and Triticum turgidum (AY494981), respectively. A pair of specific polymerase chain reaction (PCR) primers, FaF and FaR, was designed based on the conserved region of this FZ387 sequence. The amplification of primer pair Xgwm614F and FaR revealed that a specific 350-bp band (designation as A350) was obtained from the species containing A chromosomes. Furthermore, PCR on Langdon Chinese Spring substitution lines was performed, and the results found that this segment was located on both long and short arms of all A chromosomes. However, the amplification of primer pair FaF and Xgwm614R gave rise to a specific DNA band of about 350bp (designated AB350) from materials containing A and/or B chromosomes. The wild species of wheat and the relatives were amplified using the two pairs of primers, and revealed that only A350 and AB350 were found in Chinese Spring (CS). Sequence comparison and variation of SSR primers binding regions of FZ387 indicated that significant diversity might exist in the internal sequence of this Fatima-like element among triticeae genomes. Meanwhile, both A350 and AB350 can be used as molecular markers for the detection of A and AB genomes.
利用102对微卫星引物对5个黑麦种、4个小麦种和一个小黑麦品系汾直-1号进行了SSR分析。一个387 bp特异性DNA片段FZ387 (GenBank登录号:引物Xgwm614从小黑麦Fenzhi-1中分离得到EF179137,未在黑麦中扩增。NCBI BLAST结果显示,该FZ387序列与Triticum monococum (AY485644)和Triticum turgidum (AY494981)中Gypsy Ty3-LTR反转录转座子Fatima的部分序列相似性分别为94%和95%。基于FZ387序列的保守区,设计了一对特异性PCR引物FaF和FaR。引物对Xgwm614F和FaR的扩增结果显示,从含有a染色体的种属中获得了一条350 bp的特异条带(命名为A350)。进一步对Langdon Chinese Spring代换系进行PCR,结果发现该片段位于所有A染色体的长臂和短臂上。然而,引物对FaF和Xgwm614R的扩增在含有a和/或B染色体的材料中产生了约350bp的特定DNA带(命名为AB350)。利用这两对引物对小麦野生种及其近缘种进行扩增,结果表明,在中国春(CS)中只发现了A350和AB350。FZ387的序列比较和SSR引物结合区的变异表明,该法蒂玛样元件在小麦基因组中可能存在显著的内部序列多样性。同时,A350和AB350都可以作为A和AB基因组检测的分子标记。
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引用次数: 0
Chromosomes of Cichlasoma trimaculatum (male), Heros managuense (female) and their hybrid offspring 雄性三角鳞眼、雌性管理英雄及其杂交后代的染色体
Pub Date : 2009-12-01 DOI: 10.1017/S1479236209990118
Chen Youling, Zhang Qiu-jin, Wang Yan-yin, Mao Jian-ping
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引用次数: 0
CRS-PCR polymorphisms of the GHR gene and its relationship with milk production traits in Chinese Holstein cows 中国荷斯坦奶牛GHR基因的CRS-PCR多态性及其与产奶量性状的关系
Pub Date : 2009-12-01 DOI: 10.1017/S1479236209990283
Wang Li-juan, L. Qiuling, Wang Changfa, W. Hongmei, L. Jianbin, Gao Yun-dong, Hou Minghai, Zhong Jifeng
Single-nucleotide polymorphisms (SNPs) of exon 8 of the GHR gene were detected in Chinese Holstein cows by polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP). The results showed that exon 8 of the GHR gene digested by Tas I could be divided into two kinds of alleles and three kinds of genotypes. The frequencies of allele A and T were 0.6339 and 0.3661, respectively. The frequencies of genotypes AA, AT and TT were 0.459, 0.350 and 0.191, respectively. Sequencing showed one single nucleotide mutation T→A at 4962 bp of the gene in genotype TT when compared with genotype AA, and this mutation resulted in an amino acid change of phenylalanine (TTT)→tyrosine (TAT). The result of χ 2 testing indicated that the genotypic frequency of the GHR gene digested by Tas I did not fit with Hardy–Weinberg equilibrium in this population ( P P
采用聚合酶链反应限制性片段长度多态性(PCR-RFLP)检测了中国荷斯坦奶牛GHR基因外显子8的单核苷酸多态性(snp)。结果表明,Tas I消化的GHR基因外显子8可分为2种等位基因和3种基因型。等位基因A和T的频率分别为0.6339和0.3661。AA、AT和TT基因型频率分别为0.459、0.350和0.191。测序结果显示,与AA基因型相比,TT基因型在4962 bp处出现了单核苷酸突变T→A,导致苯丙氨酸(TTT)→酪氨酸(TAT)氨基酸发生变化。χ 2检验结果表明,Tas I消化GHR基因的基因型频率不符合该群体的Hardy-Weinberg平衡(P < 0.05)
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引用次数: 4
Karyotyping of Brassica oleracea C genome using Brassica A genomic DNA as blocking agent 以芸苔A基因组DNA为阻断剂的甘蓝C基因组核型分析
Pub Date : 2009-12-01 DOI: 10.1017/S1479236209990143
C. Xiaodan, Zhu Liquan, W. Yong, Rong Xiaoying, Lu Jun, Wang Xiao-jia
In exploring an effective and reliable karyotyping method in Brassica crop plants, Brassica oleracea was successfully karyotyped using genomic in situ hybridization (GISH). B. oleracea genomic DNA was labelled as probe using DIG-high prime mix kit, with B. rapa genomic DNA acting as blocking agent. Specific fluorescent signals were detected on each pair of homologous chromosomes, and nine pairs of chromosomes of B. oleracea were clearly identified according to the signal characteristics. A practical and accurate method for conducting karyotyping of small chromosomes has been demonstrated.
为探索一种有效、可靠的芸苔属作物核型方法,利用基因组原位杂交(GISH)技术成功地对芸苔属植物进行了核型分析。采用digi -high prime mix kit标记甘蓝基因组DNA作为探针,以甘蓝基因组DNA作为阻断剂。在每对同源染色体上检测特异性荧光信号,根据信号特征明确鉴定出甘蓝的9对染色体。已经证明了一种实用而准确的方法来进行小染色体的核型。
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引用次数: 0
Effect of nanoparticles on the bacterial community of the cucumber phyllosphere 纳米颗粒对黄瓜叶层细菌群落的影响
Pub Date : 2009-08-01 DOI: 10.1017/S1479236209990179
Chang Li-yan, W. Qi, Mei Ru-hong
With the rapid development of nanotechnology, the security of nanomaterials has been an increasing cause for concern. In this study, the impact of titanium dioxide nanoparticles (nano-TiO 2 ) on the phyllosphere bacterial community were analysed by both a culturable-dependent method and a polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE) method. The quantity of culturable phyllosphere bacteria was significantly reduced with an increased concentration of nano-TiO 2 . With increasing concentrations from 0.002 to 20 mg/ml of nano-TiO 2 , the quantity of culturable phyllosphere bacteria decreased from 1.8×10 6 to 3.1×10 5 cfu/g. The phyllosphere bacteria community was analysed by PCR-DGGE, and when the concentrations of nano-TiO 2 were higher than 0.02 mg/ml, the DGGE bands were significantly lower than in the control. Sequencing results of the bands from the DGGE gel showed that there were at least seven genera in the phyllosphere bacteria. Only one uncultured bacterium was unaffected by the concentration of nano-TiO 2 .
随着纳米技术的飞速发展,纳米材料的安全性日益引起人们的关注。本研究采用培养依赖法和聚合酶链反应变性梯度凝胶电泳(PCR-DGGE)法分析了二氧化钛纳米颗粒(纳米tio2)对层状球细菌群落的影响。随着纳米tio2浓度的增加,可培养的层球细菌数量显著减少。随着纳米tio2浓度从0.002增加到20 mg/ml,可培养的层球细菌数量从1.8×10 6减少到3.1×10 5 cfu/g。采用PCR-DGGE分析了层状球细菌群落,当纳米tio2浓度高于0.02 mg/ml时,DGGE条带明显低于对照。DGGE凝胶的条带测序结果表明,层球细菌中至少有7个属。只有一种未培养的细菌不受纳米tio2浓度的影响。
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引用次数: 2
Spatio-temporal expression analysis of two kinds of chemical communication-related proteins in the worker bee Apis cerana cerana Fabricius (Hymenoptera: Apidae). 两种化学通讯相关蛋白在工蜂(膜翅目:蜂科)中的时空表达分析。
Pub Date : 2009-08-01 DOI: 10.1017/S1479236209990209
Li Hong-liang, Z. Ya-li, Wang Hai-yan, G. Qikang, Chen Jia-an
The spatio-temporal expressed profiles of two kinds of chemical communication-related protein genes, the odorant-binding protein of Ac-ASP2 and chemosensory protein of Ac-ASP3, were identified by real-time polymerase chain reaction (PCR). Results obtained using the 2 -D DCt method showed that Ac-ASP2 was a gene coding antenna-specific protein that did not express in larvae and pupae, but had discontinuous high abundance periods at 1, 9, 15, 27 and 30 days. The expressing abundance at such periods was at least ten times higher than that at other periods. From the distribution ofAc-ASP3 mRNA observed in different tissues, the transcript levels seemed to be higher in the wings, abdomen and thorax (of order � 10 6 ), and lower in the legs, antennae and head (of order � 10 5 ). From highest to lowest, the original copy number was found in the various body parts in the following order: wings, abdomen, thorax, legs, antenna, and head. The results suggest that Ac-ASP3 has an intimate relation with the chemosensory behaviour of wings and abdomen in Apis cerana cerana.
采用实时聚合酶链反应(real-time polymerase chain reaction, PCR)技术鉴定了两种化学通讯相关蛋白基因Ac-ASP2的气味结合蛋白和Ac-ASP3的化学感觉蛋白的时空表达谱。2 -D DCt分析结果显示,Ac-ASP2是一种编码天线特异性蛋白的基因,在幼虫和蛹中均不表达,但在1、9、15、27和30 d有不连续的高丰度期。这些时期的表达丰度至少是其他时期的十倍。从不同组织中观察到的facc - asp3 mRNA的分布来看,其转录水平在翅膀、腹部和胸部(10 6目)较高,在腿、触角和头部(10 5目)较低。从高到低的顺序是:翅膀、腹部、胸腔、腿、天线、头部。结果表明,Ac-ASP3与中华蜜蜂翅膀和腹部的化学感觉行为有密切关系。
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引用次数: 1
Influence of BCG dose and age of inoculated mice on immunoprotection against tuberculosis and expression of IFN-γ/IL-4 BCG剂量和接种年龄对小鼠结核免疫保护及IFN-γ/IL-4表达的影响
Pub Date : 2009-08-01 DOI: 10.1017/S147923620999026X
Guo Huijun, Liang Baoquan, Chai Jia-qian, Chang Wei-shan, Wan Chun-yang, Liu Hongmei
BalB/C neonate mice and adult BalB/C mice were vaccinated using BCG (Bacille Calmette–Guerin). The pathogenic growth characteristics of BCG in in vitro culture on spleen cells (SPC) were observed and changes in induced expression of IFN (interferon)-γ and IL (interleukin)-4 in SPC were detected using the ELISPOT assay. The results showed that a low dose of BCG (2×103 cfu) exerted 100% immunoprotection on 7-day-old neonate mice and a high dose of BCG (4×104 cfu) exerted 75% immunoprotection. A low dose of BCG (2×103 cfu) exerted 67% immunoprotection on 35-day-old mice. It is also shown that Th1-type cell immunity dominated by IFN-γ was enhanced significantly in the neonate mice injected with a low dose of BCG (2×103 cfu), and Th2-type cell immunity dominated by IL-4 was depressed at the same time. IFN-γ and IL-4 induced by a high dosage of BCG (4×104 cfu) in neonate mice were both increased. IFN-γ and IL-4 induced by a low dose of BCG (2×103 cfu) in 35-day-old mice were also increased. The results indicate that there exists a marked correlation between immunoprotection by BCG in mice and both the immunizing dose and age of the immune animals, which might be relevant to the changes induced by BCG on Th1- and Th2-type cell immunity.
用卡介苗(Bacille Calmette-Guerin)接种BalB/C新生小鼠和成年BalB/C小鼠。观察卡介苗体外培养对脾细胞(SPC)的致病性生长特征,并采用ELISPOT法检测SPC诱导的IFN(干扰素)-γ和IL(白细胞介素)-4表达的变化。结果表明,低剂量卡介苗(2×103 cfu)对7日龄新生小鼠的免疫保护作用为100%,高剂量卡介苗(4×104 cfu)对7日龄新生小鼠的免疫保护作用为75%。低剂量卡介苗(2×103 cfu)对35日龄小鼠具有67%的免疫保护作用。低剂量BCG (2×103 cfu)可显著增强以IFN-γ为主的th1型细胞免疫,同时抑制以IL-4为主的th2型细胞免疫。高剂量BCG (4×104 cfu)诱导的新生小鼠IFN-γ和IL-4均升高。低剂量BCG (2×103 cfu)对35日龄小鼠IFN-γ和IL-4的诱导作用也有所增加。结果表明,卡介苗对小鼠的免疫保护作用与免疫剂量和免疫动物年龄均有显著的相关性,这可能与卡介苗对小鼠Th1-和th2型细胞免疫的改变有关。
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引用次数: 0
Expression of β-agarase I DagA in prokaryotic cell and its activity identification. β-琼脂酶I在原核细胞中的表达及活性鉴定。
Pub Date : 2009-08-01 DOI: 10.1017/S1479236209990210
Zhou Yan-sheng, Wang Bao-li, Q. Dong
The DagA gene and DagA(▽), which is a DagA gene encoding sequence without signal peptide, were cloned from genome DNA of Pseudoalteromonas atlantica 19262 by polymerase chain reaction (PCR). After ligation with pET21 vector, DagA and DagA(▽) were respectively expressed in Escherichia coli ER2566 using molecular chaperones DsbC and FkpA. A strain of ER2566-pET21a-DagA(▽)-DsbC was screened as a highly effective expressing system in the form of an inclusion body that had the target protein with up to 60% total bacterial protein. DagA protein was renatured and purified by dissolving it in 8 mol/l of urea, using Ni-NTA resin affinity chromatography and refolding using the urea gradient method. DagA with a molecular weight of ~30.8 kDa was identified by sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) and had the ability to digest agarose. In a pH range of 4.8–6.8, DagA maintained a bioactivity greater than 60%, with 5.8 being the optimum pH, and it exhibited activity at temperatures from 37°C to 60°C, with 55°C being the optimum temperature.
利用聚合酶链反应(PCR)从大西洋假异单胞菌19262的基因组DNA中克隆出了DagA基因和不含信号肽的DagA基因编码序列(△)。与pET21载体结扎后,DagA和DagA(△)分别在大肠杆菌ER2566中通过分子伴侣分子DsbC和FkpA表达。ER2566-pET21a-DagA(△)-DsbC菌株以包涵体形式高效表达,其目标蛋白含量高达细菌总蛋白的60%。将DagA蛋白溶解于8 mol/l尿素中,采用Ni-NTA树脂亲和层析,再利用尿素梯度法对其进行再折叠纯化。经十二烷基硫酸钠聚丙烯酰胺凝胶电泳(SDS-PAGE)鉴定,DagA分子量为~30.8 kDa,具有消化琼脂糖的能力。在4.8 ~ 6.8的pH范围内,DagA的生物活性保持在60%以上,最佳pH值为5.8;在37 ~ 60℃的温度范围内,DagA的活性保持在55℃。
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引用次数: 1
Identification and structure analysis of three tilapia species using microsatellite markers 3种罗非鱼的微卫星标记鉴定及结构分析
Pub Date : 2009-08-01 DOI: 10.1017/S1479236209990258
Song Hongmei, B. Junjie, Quan Yingchun, Li Shengjie
{"title":"Identification and structure analysis of three tilapia species using microsatellite markers","authors":"Song Hongmei, B. Junjie, Quan Yingchun, Li Shengjie","doi":"10.1017/S1479236209990258","DOIUrl":"https://doi.org/10.1017/S1479236209990258","url":null,"abstract":"","PeriodicalId":236932,"journal":{"name":"Chinese Journal of Agricultural Biotechnology","volume":"418 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124198015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
期刊
Chinese Journal of Agricultural Biotechnology
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