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Short-term exposure to cigarette smoke upregulates cathepsin S and alters expression of tight junction ZO-1 短期暴露于香烟烟雾会上调 cathepsin S 并改变紧密连接 ZO-1 的表达。
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.03.005
A long-term exposure to cigarette smoke (CS) alters the integrity of airway epithelial barrier, contributes to lung dysfunction, and elicits the expression and activity of lung cathepsin S (CatS), a cysteine protease that participates in the remodeling of connective tissue and cell junctions. Here, we observed that a short-term (4 days) exposure of mice to CS increased the expression and activity of CatS, while the expression level of zonula occludens 1 (ZO-1), an epithelial tight junction protein that stabilizes barrier assembly, was reduced in lung tissue lysates. Present data support that proteolytically active CatS may contribute to the defect of ZO-1 in CS-exposed mice.
长期暴露于香烟烟雾(CS)会改变气道上皮屏障的完整性,导致肺功能障碍,并引起肺猫蛋白酶 S(CatS)的表达和活性,猫蛋白酶是一种参与结缔组织和细胞连接重塑的半胱氨酸蛋白酶。在这里,我们观察到小鼠短期(4 天)暴露于 CS 会增加 CatS 的表达和活性,而肺组织裂解液中上皮紧密连接蛋白 Zonula occludens 1(ZO-1)的表达水平会降低,ZO-1 可稳定屏障的组装。目前的数据支持蛋白水解活性 CatS 可能是导致暴露于 CS 的小鼠 ZO-1 缺陷的原因。
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引用次数: 0
Substrate specificity profiling of heat-sensitive serine protease from the fungus Onygena corvina 姬松茸真菌热敏丝氨酸蛋白酶的底物特异性分析。
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.07.002
Proteases catalyze hydrolysis of amide bonds within peptides and proteins, therefore they play crucial functions for organism functioning, but also in industry to facilitate numerous processes. Feather-degrading fungus Onygena corvina (O. corvina) is loaded with numerous proteases that can be utilized for variety of applications. The most active species of these enzymes is heat-sensitive serine protease (NHSSP), from O. corvina fungi and due to its potential applications in industry is an alternative to proteinase K. The uniqueness of NHSSP relies on the ability of this enzyme to hydrolyze peptides at neutral to acidic pH values between 5.0 and 8.5, with an optimum of 6.8 and a temperature activity ranging from 15 to 50 °C making NHSSP exceptionally universal enzyme.
Thus, we have performed the in-depth characterization of NHSSP substrate specificity by using a positional scanning substrate combinatorial library (PS-SCL). Afterward, we obtained a set of fluorescent substrates hydrolyzed by NHSSP that served as a leading sequence for the first tailored covalent inhibitor of this enzyme, containing a diphenylphosphonate as a warhead and MeOSuc amine protecting group. Our first inhibitor for NHSSP binds potently with target protease and is a tool for future study of this enzyme functions.
蛋白酶能催化肽和蛋白质中酰胺键的水解,因此对生物体的功能起着至关重要的作用,在工业中也能促进许多工艺流程。羽毛降解真菌 Onygena corvina(O. corvina)含有多种蛋白酶,可用于多种用途。NHSSP 的独特之处在于它能在 5.0 到 8.5 之间的中性到酸性 pH 值范围内水解肽,最适 pH 值为 6.8,温度活性范围为 15-50°C,这使得 NHSSP 成为一种特别通用的酶。因此,我们利用位置扫描底物组合库(PS-SCL)对 NHSSP 的底物特异性进行了深入表征。随后,我们获得了一组 NHSSP 可水解的荧光底物,这些荧光底物可作为首个定制的共价抑制剂的前导序列,该抑制剂含有二苯基膦酸盐作为弹头和 MeOSuc 氨基保护基团。我们的首个 NHSSP 抑制剂能与目标蛋白酶有效结合,是未来研究该酶功能的工具。
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引用次数: 0
Compensational role between cathepsins 蛋白酶之间的补偿作用。
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.04.010
Cathepsins, a family of lysosomal peptidases, play a crucial role in maintaining cellular homeostasis by regulating protein turnover and degradation as well as many specific regulatory actions that are important for proper cell function and human health. Alterations in the activity and expression of cathepsins have been observed in many diseases such as cancer, inflammation, neurodegenerative disorders, bone remodelling-related conditions and others. These changes are not exclusively harmful, but rather appear to be a compensatory response on the lack of one cathepsin in order to maintain tissue integrity. The upregulation of specific cathepsins in response to the inhibition or dysfunction of other cathepsins suggests a fine-tuned system of proteolytic balance and understanding the compensatory role of cathepsins may improve therapeutic potential of cathepsin's inhibitors. Selectively targeting one cathepsin or modulating their activity could offer new treatment strategies for a number of diseases. This review emphasises the need for comprehensive research into cathepsin biology in the context of disease. The identification of the specific cathepsins involved in compensatory responses, the elucidation of the underlying molecular mechanisms and the development of targeted interventions could lead to innovative therapeutic approaches.
蛋白酶是溶酶体肽酶的一个家族,通过调节蛋白质的周转和降解以及许多对细胞正常功能和人体健康非常重要的特定调节作用,在维持细胞稳态方面发挥着至关重要的作用。在癌症、炎症、神经退行性疾病、骨重塑相关疾病等许多疾病中都观察到了酪蛋白酶活性和表达的变化。这些变化并不完全是有害的,而似乎是缺乏一种酪蛋白以维持组织完整性的代偿反应。特定胰蛋白酶的上调是对其他胰蛋白酶被抑制或功能失调的反应,这表明存在一个微调的蛋白水解平衡系统,了解胰蛋白酶的代偿作用可提高胰蛋白酶抑制剂的治疗潜力。选择性地针对一种酪蛋白或调节其活性可为多种疾病提供新的治疗策略。这篇综述强调了对疾病背景下的噬蛋白酶生物学进行全面研究的必要性。确定参与代偿反应的特定胰蛋白酶、阐明潜在的分子机制和开发有针对性的干预措施,可带来创新的治疗方法。
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引用次数: 0
Matrix metalloproteinase landscape in the imiquimod-induced skin inflammation mouse model 咪喹莫特诱导的皮肤炎症小鼠模型中基质金属蛋白酶的分布。
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.03.011
Inflammation and autoimmunity are known as central processes in many skin diseases, including psoriasis. It is therefore important to develop pre-clinical models that describe disease-related aspects to enable testing of pharmaceutical drug candidates and formulations. A widely accepted pre-clinical model of psoriasis is the imiquimod (IMQ)-induced skin inflammation mouse model, where topically applied IMQ provokes local skin inflammation. In this study, we investigated the abundance of a subset of matrix metalloproteinases (MMPs) in skin from mice with IMQ-induced skin inflammation and skin from naïve mice using targeted proteomics. Our findings reveal a significant increase in the abundance of MMP-2, MMP-7, MMP-8, and MMP-13 after treatment with IMQ compared to the control skin, while MMP-3, MMP-9, and MMP-10 were exclusively detected in the IMQ-treated skin. The increased abundance and broader representation of MMPs in the IMQ-treated skin provide valuable insight into the pathophysiology of skin inflammation in the IMQ model, adding to previous studies on cytokine levels using conventional immunochemical methods. Specifically, the changes in the MMP profiles observed in the IMQ-treated skin resemble the MMP patterns found in skin lesions of individuals with psoriasis. Ultimately, the differences in MMP abundance under IMQ-induced inflammation as compared to non-inflamed control skin can be exploited as a model to investigate drug efficacy or performance of drug delivery systems.
众所周知,炎症和自身免疫是包括银屑病在内的许多皮肤病的核心过程。因此,必须开发能描述疾病相关方面的临床前模型,以便对候选药物和制剂进行测试。一种广为接受的银屑病临床前模型是咪喹莫特(IMQ)诱导的皮肤炎症小鼠模型。在这项研究中,我们利用靶向蛋白质组学研究了IMQ诱导的皮肤炎症小鼠和幼稚小鼠皮肤中基质金属蛋白酶(MMPs)子集的丰度。我们的研究结果表明,与对照组皮肤相比,经 IMQ 处理后,MMP-2、MMP-7、MMP-8 和 MMP-13 的丰度明显增加,而在 IMQ 处理过的皮肤中只检测到 MMP-3、MMP-9 和 MMP-10。在 IMQ 处理过的皮肤中,MMPs 的丰度增加且具有更广泛的代表性,这为了解 IMQ 模型中皮肤炎症的病理生理学提供了宝贵的信息,补充了之前使用传统免疫化学方法对细胞因子水平进行的研究。具体来说,在经 IMQ 处理的皮肤中观察到的 MMP 图谱变化与银屑病患者皮损中发现的 MMP 模式相似。最终,在 IMQ 诱导的炎症中,MMP 丰度与非炎症对照皮肤的差异可被用作研究药物疗效或给药系统性能的模型。
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引用次数: 0
Cysteine cathepsins: From diagnosis to targeted therapy of cancer 半胱氨酸胰蛋白酶:从诊断到癌症靶向治疗。
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.09.001
Ana Ercegovič Rot , Matija Hrovatin , Bor Bokalj , Ernestina Lavrih , Boris Turk
Cysteine cathepsins are a fascinating group of proteolytic enzymes that play diverse and crucial roles in numerous biological processes, both in health and disease. Understanding these proteases is essential for uncovering novel insights into the underlying mechanisms of a wide range of disorders, such as cancer. Cysteine cathepsins influence cancer biology by participating in processes such as extracellular matrix degradation, angiogenesis, immune evasion, and apoptosis. In this comprehensive review, we explore foundational research that illuminates the diverse and intricate roles of cysteine cathepsins as diagnostic markers and therapeutic targets for cancer. This review aims to provide valuable insights into the clinical relevance of cysteine cathepsins and explore their capacity to advance personalised and targeted medical interventions in oncology.
半胱氨酸蛋白酶是一组令人着迷的蛋白水解酶,在健康和疾病的众多生物过程中发挥着多种多样的关键作用。了解这些蛋白酶对于揭示癌症等多种疾病的潜在机制至关重要。半胱氨酸酪蛋白通过参与细胞外基质降解、血管生成、免疫逃避和细胞凋亡等过程来影响癌症生物学。在这篇综合性综述中,我们探讨了一些基础性研究,这些研究揭示了半胱氨酸酪蛋白作为癌症诊断标志物和治疗靶点所发挥的多样而复杂的作用。本综述旨在为半胱氨酸酪蛋白的临床相关性提供有价值的见解,并探讨它们在肿瘤学中推进个性化和靶向医疗干预的能力。
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引用次数: 0
Advances in nuclear proteostasis of metazoans 后生动物核蛋白稳态研究进展。
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.04.006
The proteostasis network and associated protein quality control (PQC) mechanisms ensure proteome functionality and are essential for cell survival. A distinctive feature of eukaryotic cells is their high degree of compartmentalization, requiring specific and adapted proteostasis networks for each compartment. The nucleus, essential for maintaining the integrity of genetic information and gene transcription, is one such compartment. While PQC mechanisms have been investigated for decades in the cytoplasm and the endoplasmic reticulum, our knowledge of nuclear PQC pathways is only emerging. Recent developments in the field have underscored the importance of spatially managing aberrant proteins within the nucleus. Upon proteotoxic stress, misfolded proteins and PQC effectors accumulate in various nuclear membrane-less organelles. Beyond bringing together effectors and substrates, the biophysical properties of these organelles allow novel PQC functions. In this review, we explore the specificity of the nuclear compartment, the effectors of the nuclear proteostasis network, and the PQC roles of nuclear membrane-less organelles in metazoans.
蛋白稳态网络和相关的蛋白质质量控制(PQC)机制确保了蛋白质组的功能,对细胞的存活至关重要。真核细胞的一个显著特点是高度区隔化,每个区隔都需要特定的、适应性强的蛋白稳态网络。对保持遗传信息和基因转录的完整性至关重要的细胞核就是这样一个区室。虽然对细胞质和内质网的 PQC 机制已经研究了几十年,但我们对细胞核 PQC 途径的了解才刚刚开始。该领域的最新进展强调了在核内对异常蛋白质进行空间管理的重要性。蛋白质毒性应激时,错误折叠的蛋白质和 PQC 效应子会在各种无核膜细胞器中积累。除了将效应物和底物聚集在一起外,这些细胞器的生物物理特性还允许 PQC 发挥新的功能。在这篇综述中,我们将探讨核区的特异性、核蛋白稳态网络的效应物以及元古宙无核膜细胞器的 PQC 作用。
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引用次数: 0
A yummy blend of homeostasis and proteolytic mechanisms 平衡与蛋白质分解机制的完美融合。
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.10.005
Chahrazade El Amri (Prof.), Dr. Carmela Giglione, Gilles Lalmanach (Prof.)
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引用次数: 0
Impact of MG132 induced-proteotoxic stress on αB-crystallin and desmin phosphorylation and O-GlcNAcylation and their partition towards cytoskeleton MG132诱导的蛋白毒性应激对αB-结晶素和desmin磷酸化和O-GlcNA酰化及其向细胞骨架分化的影响
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.04.004
Small Heat Shock Proteins are considered as the first line of defense when proteostasis fails. Among them, αB-crystallin is expressed in striated muscles in which it interacts with desmin intermediate filaments to stabilize them, maintaining cytoskeleton's integrity and muscular functionalities. Desmin is a key actor for muscle health; its targeting by αB-crystallin is thus crucial, especially in stress conditions.
αB-crystallin is phosphorylated and O-GlcNAcylated. Its phosphorylation increases consecutively to various stresses, correlated with its recruitment for cytoskeleton's safeguarding. However, phosphorylation as unique signal for cytoskeleton translocation remains controversial; indeed, O-GlcNAcylation was also proposed to be involved. Thus, there are still some gaps for a deeper comprehension of how αB-crystallin functions are finely regulated by post-translational modifications. Furthermore, desmin also bears both post-translational modifications; while desmin phosphorylation is closely linked to desmin intermediates filaments turnover, it is unclear whereas its O-GlcNAcylation could impact its proper function.
In the herein paper, we aim at identifying whether phosphorylation and/or O-GlcNAcylation are involved in αB-crystallin targeting towards cytoskeleton in proteotoxic stress induced by proteasome inhibition in C2C12 myotubes. We demonstrated that proteotoxicity led to αB-crystallin's phosphorylation and O-GlcNAcylation patterns changes, both presenting a dynamic interplay depending on protein subfraction. Importantly, both post-translational modifications showed a spatio-temporal variation correlated with αB-crystallin translocation towards cytoskeleton. In contrast, we did not detect any change of desmin phosphorylation and O-GlcNAcylation. All together, these data strongly support that αB-crystallin phosphorylation/O-GlcNAcylation interplay rather than changes on desmin is a key regulator for its cytoskeleton translocation, preserving it towards stress.
小热休克蛋白被认为是蛋白稳态失效时的第一道防线。其中,αB-结晶蛋白在横纹肌中表达,它与 Desmin 中间丝相互作用以稳定这些中间丝,从而维持细胞骨架的完整性和肌肉功能。Desmin 是肌肉健康的关键因素;因此,αB-结晶素靶向 Desmin 至关重要,尤其是在压力条件下。αB-结晶素具有磷酸化和 O-GlcNAcylated 两种功能。在各种应激条件下,αB-结晶素的磷酸化都会增加,这与αB-结晶素被用于保护细胞骨架有关。然而,磷酸化作为细胞骨架转运的独特信号仍存在争议;事实上,O-GlcNAcylation 也被认为参与其中。因此,要深入了解αB-结晶素的功能如何受到翻译后修饰的精细调控,还存在一些空白。在本文中,我们旨在确定磷酸化和/或O-GlcNAcylation是否参与αB-结晶素在蛋白酶体抑制诱导的蛋白毒性应激中靶向细胞骨架的过程。我们证实,蛋白毒性导致αB-结晶素的磷酸化和O-GlcNAcylation模式发生变化,二者根据蛋白质亚组分的不同呈现出动态的相互作用。重要的是,这两种翻译后修饰的时空变化与αB-结晶素向细胞骨架的转移相关。相反,我们没有检测到 desmin 磷酸化和 O-GlcNAcylation 的任何变化。综上所述,这些数据有力地证明了αB-结晶素磷酸化/O-GlcNA酰化之间的相互作用,而不是desmin的变化,是其向细胞骨架转位的关键调节因子,从而保护其免受应激。
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引用次数: 0
N-terminal processing by dipeptidyl peptidase 9: Cut and Go! 二肽基肽酶 9 的 N 末端处理:剪切和转运!
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.03.002
Dipeptidyl peptidase 9 (DPP9) is an intracellular amino-dipeptidase with physiological roles in the immune system, DNA repair and mitochondria homeostasis, while its deregulation is linked to cancer progression and immune-associated defects. Through its rare ability to cleave a peptide bond following the imino-acid proline, DPP9 acts as a molecular switch that regulates key proteins, such as the tumor-suppressor BRCA2. In this review we will discuss key concepts underlying the outcomes of protein processing by DPP9, including substrate turn-over by the N-degron pathway. Additionally, we will review non-enzymatic roles and the regulation of DPP9 by discussing the interactome of this protease, which includes SUMO1, Filamin A, NLRP1 and CARD8.
二肽基肽酶 9(DPP9)是一种细胞内氨基二肽酶,在免疫系统、DNA 修复和线粒体稳态中发挥着生理作用,而其失调则与癌症进展和免疫相关缺陷有关。DPP9 具有一种罕见的能力,能在亚胺酸脯氨酸之后裂解肽键,从而充当调节肿瘤抑制因子 BRCA2 等关键蛋白的分子开关。在这篇综述中,我们将讨论 DPP9 蛋白加工结果的关键概念,包括 N-降解子途径的底物翻转。此外,我们还将通过讨论这种蛋白酶的相互作用组(包括 SUMO1、Filamin A、NLRP1 和 CARD8)来回顾 DPP9 的非酶作用和调控。
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引用次数: 0
Mitochondrial proteases modulate mitochondrial stress signalling and cellular homeostasis in health and disease 线粒体蛋白酶调节线粒体应激信号以及健康和疾病中的细胞稳态。
IF 3.3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1016/j.biochi.2024.06.005
Maintenance of mitochondrial homeostasis requires a plethora of coordinated quality control and adaptations’ mechanisms in which mitochondrial proteases play a key role. Their activation or loss of function reverberate beyond local mitochondrial biochemical and metabolic remodelling into coordinated cellular pathways and stress responses that feedback onto the mitochondrial functionality and adaptability. Mitochondrial proteolysis modulates molecular and organellar quality control, metabolic adaptations, lipid homeostasis and regulates transcriptional stress responses. Defective mitochondrial proteolysis results in disease conditions most notably, mitochondrial diseases, neurodegeneration and cancer. Here, it will be discussed how mitochondrial proteases and mitochondria stress signalling impact cellular homeostasis and determine the cellular decision to survive or die, how these processes may impact disease etiopathology, and how modulation of proteolysis may offer novel therapeutic strategies.
线粒体平衡的维持需要大量协调的质量控制和适应机制,线粒体蛋白酶在其中发挥着关键作用。线粒体蛋白酶功能的激活或丧失不仅会影响线粒体的局部生化和代谢重塑,还会影响到协调的细胞通路和应激反应,从而对线粒体的功能性和适应性产生反馈作用。线粒体蛋白水解调节分子和细胞器质量控制、代谢适应、脂质平衡,并调节转录应激反应。线粒体蛋白水解缺陷会导致疾病,尤其是线粒体疾病、神经变性和癌症。这里将讨论线粒体蛋白酶和线粒体应激信号如何影响细胞的稳态并决定细胞的存亡,这些过程如何影响疾病的病因病理,以及调节蛋白分解如何提供新的治疗策略。
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引用次数: 0
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