首页 > 最新文献

2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro最新文献

英文 中文
Direct adaptive algorithms for CT reconstruction CT重建的直接自适应算法
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193013
J. Shtok, Michael Elad, M. Zibulevsky
This work concerns with linear and spatially-adaptive direct reconstruction algorithms for 2-D parallel-beam transmission tomography, extending the Filtered Back-Projection (FBP). The standard apodized Ram-Lak filter kernel is replaced with a bank of statistically trained 2-D convolution kernels, leading to improved reconstruction results. Two types of filter training procedures are considered. The first deals with reconstruction from noisy and truncated projections in a predefined region of interest, for images from a known family. In the second algorithm, termed SPADES, the training aims at improving the impulse response properties of the overall projection-reconstruction scheme. In this algorithm, the degree of smoothing applied to the reconstructed image is spatially controlled by a switch rule. Both methods are shown by simulations to operate well and lead to substantially improved reconstruction results.
这项工作涉及二维平行光束透射断层扫描的线性和空间自适应直接重建算法,扩展了滤波反投影(FBP)。用一组经过统计训练的二维卷积核取代标准的apodized Ram-Lak滤波器核,从而改善了重建结果。考虑了两种类型的过滤器训练程序。第一种方法是在预定义的感兴趣区域对已知家族的图像进行噪声和截断投影的重建。在第二种算法中,称为SPADES,训练的目的是提高整个投影重建方案的脉冲响应特性。在该算法中,重构图像的平滑程度由切换规则在空间上控制。仿真结果表明,两种方法均运行良好,重建效果显著提高。
{"title":"Direct adaptive algorithms for CT reconstruction","authors":"J. Shtok, Michael Elad, M. Zibulevsky","doi":"10.1109/ISBI.2009.5193013","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5193013","url":null,"abstract":"This work concerns with linear and spatially-adaptive direct reconstruction algorithms for 2-D parallel-beam transmission tomography, extending the Filtered Back-Projection (FBP). The standard apodized Ram-Lak filter kernel is replaced with a bank of statistically trained 2-D convolution kernels, leading to improved reconstruction results. Two types of filter training procedures are considered. The first deals with reconstruction from noisy and truncated projections in a predefined region of interest, for images from a known family. In the second algorithm, termed SPADES, the training aims at improving the impulse response properties of the overall projection-reconstruction scheme. In this algorithm, the degree of smoothing applied to the reconstructed image is spatially controlled by a switch rule. Both methods are shown by simulations to operate well and lead to substantially improved reconstruction results.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127116674","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Registration of contours of brain structures through a heat-kernel representation of shape 通过形状的热核表示来注册大脑结构的轮廓
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193209
Jonathan Bates, Y. Wang, Xiuwen Liu, W. Mio
We develop an algorithm for the registration of surfaces representing the contours of various subcortical structures of the human brain. We employ a scale-space representation of shape based on the heat kernel, which only depends on the intrinsic geometry of the surfaces. The multi-scale representation is used in conjunction with the non-linear Iterative Closest Point algorithm based on thin-plate-spline warps to establish point correspondences between shapes. The method is applied to the registration of the contours of four subcortical structures: the hippocampus, caudate nucleus, putamen, and third ventricle.
我们开发了一种算法,用于注册代表人类大脑各种皮层下结构轮廓的表面。我们采用基于热核的形状的尺度空间表示,它只依赖于表面的固有几何形状。将多尺度表示与基于薄板样条翘曲的非线性迭代最近点算法相结合,建立形状之间的点对应关系。该方法应用于海马、尾状核、壳核和第三脑室四个皮质下结构的轮廓配准。
{"title":"Registration of contours of brain structures through a heat-kernel representation of shape","authors":"Jonathan Bates, Y. Wang, Xiuwen Liu, W. Mio","doi":"10.1109/ISBI.2009.5193209","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5193209","url":null,"abstract":"We develop an algorithm for the registration of surfaces representing the contours of various subcortical structures of the human brain. We employ a scale-space representation of shape based on the heat kernel, which only depends on the intrinsic geometry of the surfaces. The multi-scale representation is used in conjunction with the non-linear Iterative Closest Point algorithm based on thin-plate-spline warps to establish point correspondences between shapes. The method is applied to the registration of the contours of four subcortical structures: the hippocampus, caudate nucleus, putamen, and third ventricle.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"10 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133033976","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Ternary Quartic approach for positive 4th order diffusion tensors revisited 重新讨论正四阶扩散张量的三元四次方法
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193123
Aurobrata Ghosh, Maher Moakher, R. Deriche
In Diffusion Magnetic Resonance Imaging (D-MRI), the 2nd order diffusion tensor has given rise to a widely used tool — Diffusion Tensor Imaging (DTI). However, it is known that DTI is limited to a single prominent diffusion direction and is inaccurate in regions of complex fiber structures such as crossings. Various other approaches have been introduced to recover such complex tissue micro-geometries, one of which is Higher Order Cartesian Tensors. Estimating a positive diffusion function has also been emphasised mathematically, since diffusion is a physical quantity. Recently there have been efforts to estimate 4th order diffusion tensors from Diffusion Weighted Images (DWIs), which are capable of describing crossing configurations with the added property of a positive diffusion function. We take up one such, the Ternary Quartic approach, and reformulate the estimation equation to facilitate the estimation of the non-negative 4th order diffusion tensor. With our modified approach we test on synthetic, phantom and real data and confirm previous results.
在扩散磁共振成像(D-MRI)中,二阶扩散张量产生了一种广泛使用的工具——扩散张量成像(DTI)。然而,众所周知,DTI仅限于单一的突出扩散方向,并且在复杂的纤维结构区域(如交叉点)是不准确的。已经引入了各种其他方法来恢复这种复杂的组织微观几何,其中之一是高阶笛卡尔张量。由于扩散是一个物理量,因此在数学上也强调了对正扩散函数的估计。近年来,人们一直在努力从扩散加权图像(dwi)中估计四阶扩散张量,它能够描述具有正扩散函数附加性质的交叉构型。我们采用一种这样的方法,三元四次方法,并重新制定估计方程,以方便估计非负四阶扩散张量。通过改进后的方法,我们对合成数据、模拟数据和真实数据进行了测试,并确认了之前的结果。
{"title":"Ternary Quartic approach for positive 4th order diffusion tensors revisited","authors":"Aurobrata Ghosh, Maher Moakher, R. Deriche","doi":"10.1109/ISBI.2009.5193123","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5193123","url":null,"abstract":"In Diffusion Magnetic Resonance Imaging (D-MRI), the 2nd order diffusion tensor has given rise to a widely used tool — Diffusion Tensor Imaging (DTI). However, it is known that DTI is limited to a single prominent diffusion direction and is inaccurate in regions of complex fiber structures such as crossings. Various other approaches have been introduced to recover such complex tissue micro-geometries, one of which is Higher Order Cartesian Tensors. Estimating a positive diffusion function has also been emphasised mathematically, since diffusion is a physical quantity. Recently there have been efforts to estimate 4th order diffusion tensors from Diffusion Weighted Images (DWIs), which are capable of describing crossing configurations with the added property of a positive diffusion function. We take up one such, the Ternary Quartic approach, and reformulate the estimation equation to facilitate the estimation of the non-negative 4th order diffusion tensor. With our modified approach we test on synthetic, phantom and real data and confirm previous results.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130145617","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 29
Feature extraction from cancer images using local phase congruency: A reliable source of image descriptors 使用局部相位一致性的癌症图像特征提取:图像描述符的可靠来源
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193281
T. Szilágyi, M. Brady
The (semi-) automatic detection of significant (feature) points is a key task in in vivo assessment of cancer staging and progression. However, this is a challenging task due to the relatively poor signal-to-noise, limited resolution and variable intensity of medical images. We propose to use phase congruence (PC), the Morrone and Owens (1987) feature model, to extract local descriptors. We overcome the limitations of the currently accepted PC measure, estimate PC without using an image energy weighting factor. We show that: (i) relative phase values from a single scale are not equivalent to phase values from PC, and should not be used to assess local image structure; and (ii) our approach results in higher specificity to features of interest, and lower sensitivity to noise, as demonstrated in in vitro microscopy (e.g. tumour microvessels) and in vivo pre-clinical pancreatic cancer images.
重要(特征)点的(半)自动检测是体内评估癌症分期和进展的关键任务。然而,由于医学图像相对较差的信噪比、有限的分辨率和可变的强度,这是一项具有挑战性的任务。我们建议使用相同余(PC),即Morrone和Owens(1987)的特征模型来提取局部描述符。我们克服了目前公认的PC测量的局限性,在不使用图像能量加权因子的情况下估计PC。我们发现:(i)来自单个尺度的相对相位值与来自PC的相位值不相等,不应用于评估局部图像结构;(ii)我们的方法对感兴趣的特征具有更高的特异性,对噪声的敏感性较低,正如体外显微镜(例如肿瘤微血管)和体内临床前胰腺癌图像所证明的那样。
{"title":"Feature extraction from cancer images using local phase congruency: A reliable source of image descriptors","authors":"T. Szilágyi, M. Brady","doi":"10.1109/ISBI.2009.5193281","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5193281","url":null,"abstract":"The (semi-) automatic detection of significant (feature) points is a key task in in vivo assessment of cancer staging and progression. However, this is a challenging task due to the relatively poor signal-to-noise, limited resolution and variable intensity of medical images. We propose to use phase congruence (PC), the Morrone and Owens (1987) feature model, to extract local descriptors. We overcome the limitations of the currently accepted PC measure, estimate PC without using an image energy weighting factor. We show that: (i) relative phase values from a single scale are not equivalent to phase values from PC, and should not be used to assess local image structure; and (ii) our approach results in higher specificity to features of interest, and lower sensitivity to noise, as demonstrated in in vitro microscopy (e.g. tumour microvessels) and in vivo pre-clinical pancreatic cancer images.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"4 1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123897632","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
Zero-order-free image reconstruction in digital holographic microscopy 数字全息显微术中的无零阶图像重建
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193018
C. Seelamantula, N. Pavillon, C. Depeursinge, M. Unser
We address the problem of zero-order-free image reconstruction in digital holographic microscopy. We show how the goal can be achieved by confining the object-wave modulation to one quadrant of the frequency domain, and by maintaining a reference-wave intensity higher than that of the object. The proposed technique is nonlinear, noniterative, and leads to exact reconstruction in the absence of noise. We also provide experimental results on holograms of yew pollen grains to validate the theoretical results.
我们解决了零阶无图像重建的问题,在数字全息显微镜。我们展示了如何通过将对象波调制限制在频域的一个象限,并通过保持参考波强度高于对象的强度来实现目标。该方法是非线性的、非迭代的,可以在没有噪声的情况下精确重建。我们还提供了红豆杉花粉颗粒全息图的实验结果来验证理论结果。
{"title":"Zero-order-free image reconstruction in digital holographic microscopy","authors":"C. Seelamantula, N. Pavillon, C. Depeursinge, M. Unser","doi":"10.1109/ISBI.2009.5193018","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5193018","url":null,"abstract":"We address the problem of zero-order-free image reconstruction in digital holographic microscopy. We show how the goal can be achieved by confining the object-wave modulation to one quadrant of the frequency domain, and by maintaining a reference-wave intensity higher than that of the object. The proposed technique is nonlinear, noniterative, and leads to exact reconstruction in the absence of noise. We also provide experimental results on holograms of yew pollen grains to validate the theoretical results.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"18 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121396598","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
A new interactive method for coronary arteries segmentation based on tubular anisotropy 基于小管各向异性的交互式冠状动脉分割新方法
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5192978
Fethallah Benmansour, L. Cohen
In this paper we present a new interactive method for tubular structure extraction. The main application and motivation for this work is vessel tracking in 3D medical images. The basic tools are minimal paths solved using the fast marching algorithm. This leads to interactive tools for the physician by clicking on a small number of points in order to obtain a minimal path between two points or a set of paths in the case of a tree structure. Our method is based on a variant of the minimal path method that models the vessel as a centerline and surface by adding one dimension for the local radius around the centerline. The crucial step of our method is the definition of the local metrics to minimize (based on the local orientation using a Riemannian Metric). This approach is made available for the physician using an Object Oriented Language (OOL) interface. We show results on two CT cardiac images for coronary arteries segmentation.
本文提出了一种新的管状结构提取交互方法。这项工作的主要应用和动机是三维医学图像中的血管跟踪。基本工具是使用快速行进算法求解最小路径。这就为医生提供了交互式工具,通过点击少量的点来获得两点之间的最小路径,或者在树形结构的情况下获得一组路径。我们的方法是基于最小路径方法的一种变体,该方法通过为中心线周围的局部半径添加一个维度,将船舶建模为中心线和表面。我们方法的关键步骤是定义要最小化的局部度量(基于使用黎曼度量的局部方向)。这种方法可以通过面向对象语言(OOL)接口提供给医生。我们展示了冠状动脉分割的两个CT心脏图像的结果。
{"title":"A new interactive method for coronary arteries segmentation based on tubular anisotropy","authors":"Fethallah Benmansour, L. Cohen","doi":"10.1109/ISBI.2009.5192978","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5192978","url":null,"abstract":"In this paper we present a new interactive method for tubular structure extraction. The main application and motivation for this work is vessel tracking in 3D medical images. The basic tools are minimal paths solved using the fast marching algorithm. This leads to interactive tools for the physician by clicking on a small number of points in order to obtain a minimal path between two points or a set of paths in the case of a tree structure. Our method is based on a variant of the minimal path method that models the vessel as a centerline and surface by adding one dimension for the local radius around the centerline. The crucial step of our method is the definition of the local metrics to minimize (based on the local orientation using a Riemannian Metric). This approach is made available for the physician using an Object Oriented Language (OOL) interface. We show results on two CT cardiac images for coronary arteries segmentation.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129317250","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
An active surface model for volumetric image segmentation 一种用于体积图像分割的活动曲面模型
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193317
N. El-Zehiry, Adel Said Elmaghraby
In this paper, we introduce a graph cut based active surface model that incorporates graph cuts optimization tools with implicit surface representation to solve the segmentation problem. We will introduce a discrete formulation of the surface evolution problem, prove that the discrete energy function is graph representable and propose how to optimize it using graph cuts. The advantage of this model is two fold: First, Graph cuts are mostly global optimization tools which makes the model very robust and not sensitive to initialization, moreover, the dynamic labeling associated with graph cuts optimization tools makes the model very fast. Second, the implicit representation of the surface makes it robust to topology changes.
本文介绍了一种基于图割的活动曲面模型,该模型结合了图割优化工具和隐式曲面表示来解决分割问题。我们将引入曲面演化问题的离散公式,证明离散能量函数是图可表示的,并提出如何使用图切割对其进行优化。该模型的优点有两个方面:首先,图切主要是全局优化工具,这使得模型非常鲁棒,对初始化不敏感;此外,与图切优化工具相关的动态标记使得模型非常快速。其次,表面的隐式表示使其对拓扑变化具有鲁棒性。
{"title":"An active surface model for volumetric image segmentation","authors":"N. El-Zehiry, Adel Said Elmaghraby","doi":"10.1109/ISBI.2009.5193317","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5193317","url":null,"abstract":"In this paper, we introduce a graph cut based active surface model that incorporates graph cuts optimization tools with implicit surface representation to solve the segmentation problem. We will introduce a discrete formulation of the surface evolution problem, prove that the discrete energy function is graph representable and propose how to optimize it using graph cuts. The advantage of this model is two fold: First, Graph cuts are mostly global optimization tools which makes the model very robust and not sensitive to initialization, moreover, the dynamic labeling associated with graph cuts optimization tools makes the model very fast. Second, the implicit representation of the surface makes it robust to topology changes.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"6 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128734374","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Sparse representation of deformable 3D organs 可变形三维器官的稀疏表示
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193195
Dan Wang, A. Tewfik
Parametric representation of deformable object with complex surface has been a challenge in various medical applications for its demanding resource consumptions. This paper proposed an efficient algorithm to construct a compact basis for a sequence of deformed 3D organ, in which those surfaces can be sparsely represented with a small number of parameters. The key idea in this paper is to explore the correlations among the deformed surfaces of an organ and extract the principle basis for representation and reconstruction. Both theoretical analysis and extensive simulations verified that the presented algorithm yields a three-order magnitude reduction in computational and storage complexity relative to traditional approaches while maintaining high precision for surface reconstruction. The proposed algorithm can be used for organ deformation tracking and optimal sampling strategy design.
具有复杂表面的可变形物体的参数化表示由于其对资源的要求很高,在各种医学应用中一直是一个挑战。本文提出了一种构造三维变形器官序列的紧凑基的有效算法,该序列的曲面可以用少量参数稀疏表示。本文的核心思想是探索器官变形表面之间的相互关系,并提取表征和重建的原则依据。理论分析和大量仿真验证了该算法与传统方法相比,计算和存储复杂度降低了三个数量级,同时保持了表面重建的高精度。该算法可用于器官变形跟踪和最优采样策略设计。
{"title":"Sparse representation of deformable 3D organs","authors":"Dan Wang, A. Tewfik","doi":"10.1109/ISBI.2009.5193195","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5193195","url":null,"abstract":"Parametric representation of deformable object with complex surface has been a challenge in various medical applications for its demanding resource consumptions. This paper proposed an efficient algorithm to construct a compact basis for a sequence of deformed 3D organ, in which those surfaces can be sparsely represented with a small number of parameters. The key idea in this paper is to explore the correlations among the deformed surfaces of an organ and extract the principle basis for representation and reconstruction. Both theoretical analysis and extensive simulations verified that the presented algorithm yields a three-order magnitude reduction in computational and storage complexity relative to traditional approaches while maintaining high precision for surface reconstruction. The proposed algorithm can be used for organ deformation tracking and optimal sampling strategy design.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128744576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Detecting brain shift during deep brain stimulation surgery using intra-operative data and functional atlases: A preliminary study 利用术中数据和功能图谱检测深部脑刺激手术中的脑转移:一项初步研究
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193059
S. Pallavaram, P. D'haese, M. Remple, J. Neimat, C. Kao, Rui Li, P. Konrad, B. Dawant
Recently, many groups have reported on the occurrence of brain shift in stereotactic surgery and its impact on the procedure. A shift of deep brain structures by only a few millimeters can potentially increase the number of required microelectrode and/or macroelectrode tracks. This can cause complications and potentially affect implantation accuracy. Detecting intra-operative brain shift and, more significantly correcting for it intra-operatively can thus impact the procedure and its outcome. In this study, we have used intra-operative stimulation response data to assess brain shift. Using a shift free functional atlas containing therapeutic response to stimulation (efficacy) data from a population of patients we build statistical efficacy maps on new patients. We then compare the information provided by the maps with the actual intra-operative responses of those patients to detect brain shift. Our preliminary results show that by maximizing the correlation between statistical maps and intra-operative observations, it may be possible to detect intra-operative brain shift and potentially correct for it.
近年来,许多研究小组报道了立体定向手术中脑转移的发生及其对手术过程的影响。大脑深部结构仅发生几毫米的移动就可能增加所需的微电极和/或大电极轨迹的数量。这可能会导致并发症,并可能影响植入的准确性。检测术中脑转移,更重要的是在术中纠正它,因此可以影响手术及其结果。在这项研究中,我们使用术中刺激反应数据来评估脑转移。使用包含来自患者群体的对刺激的治疗反应(疗效)数据的无移位功能图谱,我们建立了新患者的统计疗效图。然后,我们将这些图提供的信息与这些患者的实际术中反应进行比较,以检测脑转移。我们的初步结果表明,通过最大化统计图与术中观察之间的相关性,有可能检测术中脑转移并可能对其进行纠正。
{"title":"Detecting brain shift during deep brain stimulation surgery using intra-operative data and functional atlases: A preliminary study","authors":"S. Pallavaram, P. D'haese, M. Remple, J. Neimat, C. Kao, Rui Li, P. Konrad, B. Dawant","doi":"10.1109/ISBI.2009.5193059","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5193059","url":null,"abstract":"Recently, many groups have reported on the occurrence of brain shift in stereotactic surgery and its impact on the procedure. A shift of deep brain structures by only a few millimeters can potentially increase the number of required microelectrode and/or macroelectrode tracks. This can cause complications and potentially affect implantation accuracy. Detecting intra-operative brain shift and, more significantly correcting for it intra-operatively can thus impact the procedure and its outcome. In this study, we have used intra-operative stimulation response data to assess brain shift. Using a shift free functional atlas containing therapeutic response to stimulation (efficacy) data from a population of patients we build statistical efficacy maps on new patients. We then compare the information provided by the maps with the actual intra-operative responses of those patients to detect brain shift. Our preliminary results show that by maximizing the correlation between statistical maps and intra-operative observations, it may be possible to detect intra-operative brain shift and potentially correct for it.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"64 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115827464","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Improving M/EEG source localizationwith an inter-condition sparse prior 利用条件间稀疏先验改进M/EEG源定位
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193003
Alexandre Gramfort, M. Kowalski
The inverse problem with distributed dipoles models in M/EEG is strongly ill-posed requiring to set priors on the solution. Most common priors are based on a convenient ℓ2 norm. However such methods are known to smear the estimated distribution of cortical currents. In order to provide sparser solutions, other norms than ℓ2 have been proposed in the literature, but they often do not pass the test of real data. Here we propose to perform the inverse problem on multiple experimental conditions simultaneously and to constrain the corresponding active regions to be different, while preserving the robust ℓ2 prior over space and time. This approach is based on a mixed norm that sets a ℓ1 prior between conditions. The optimization is performed with an efficient iterative algorithm able to handle highly sampled distributed models. The method is evaluated on two synthetic datasets reproducing the organization of the primary somatosensory cortex (S1) and the primary visual cortex (V1), and validated with MEG somatosensory data.
具有分布偶极子模型的脑电反问题是强不适定的,需要对解设置先验。最常见的先验是基于一个方便的l2范数。然而,已知这种方法会涂抹估计的皮质电流分布。为了提供更稀疏的解,文献中已经提出了其他规范,但它们往往不能通过实际数据的检验。在此,我们提出在多个实验条件下同时执行反问题,并约束相应的活动区域不同,同时保持在空间和时间上的鲁棒性。这种方法是基于一个混合范数,它在条件之间设置了一个v1先验。优化是通过一种有效的迭代算法来实现的,该算法能够处理高采样的分布式模型。在再现初级体感皮层(S1)和初级视觉皮层(V1)组织的两个合成数据集上对该方法进行了评估,并用MEG体感数据对该方法进行了验证。
{"title":"Improving M/EEG source localizationwith an inter-condition sparse prior","authors":"Alexandre Gramfort, M. Kowalski","doi":"10.1109/ISBI.2009.5193003","DOIUrl":"https://doi.org/10.1109/ISBI.2009.5193003","url":null,"abstract":"The inverse problem with distributed dipoles models in M/EEG is strongly ill-posed requiring to set priors on the solution. Most common priors are based on a convenient ℓ2 norm. However such methods are known to smear the estimated distribution of cortical currents. In order to provide sparser solutions, other norms than ℓ2 have been proposed in the literature, but they often do not pass the test of real data. Here we propose to perform the inverse problem on multiple experimental conditions simultaneously and to constrain the corresponding active regions to be different, while preserving the robust ℓ2 prior over space and time. This approach is based on a mixed norm that sets a ℓ1 prior between conditions. The optimization is performed with an efficient iterative algorithm able to handle highly sampled distributed models. The method is evaluated on two synthetic datasets reproducing the organization of the primary somatosensory cortex (S1) and the primary visual cortex (V1), and validated with MEG somatosensory data.","PeriodicalId":272938,"journal":{"name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","volume":"134 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116336171","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 22
期刊
2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1