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2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro最新文献

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A periodic optical flow model for cardiac gated images 心脏门控图像的周期光流模型
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193149
Ling Li, Xiaofeng Niu, Yongyi Yang
For the purpose of motion-compensated processing we propose a temporal modeling approach for determining the image motion in a gated cardiac sequence, wherein the inherent image motion is periodic over time. To exploit the periodic nature of the cardiac motion, we use a Fourier harmonic representation to describe the motion field for the entire sequence. We then determine the motion field by estimating the parameters of this representation model. This joint estimation approach can take advantage of the statistics of all the available image data in the sequence. In the experiments, we applied the proposed approach to motioncompensated 4D reconstruction of gated cardiac SPECT images. Our results demonstrate that it could achieve robust estimation of the motion field and lead to improved image reconstruction despite the presence of strong imaging noise.
为了运动补偿处理的目的,我们提出了一种时间建模方法来确定门控心脏序列中的图像运动,其中固有的图像运动是周期性的。为了利用心脏运动的周期性,我们使用傅立叶谐波表示来描述整个序列的运动场。然后,我们通过估计该表示模型的参数来确定运动场。这种联合估计方法可以利用序列中所有可用图像数据的统计信息。在实验中,我们将该方法应用于门控心脏SPECT图像的运动补偿4D重建。我们的研究结果表明,尽管存在强成像噪声,但它可以实现对运动场的鲁棒估计,并导致改进的图像重建。
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引用次数: 2
Analyzing multi-fiber reconstruction in high angular resolution diffusion imaging using the tensor distribution function 利用张量分布函数分析高角分辨扩散成像中多光纤的重建
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193328
L. Zhan, A. Leow, Siwei Zhu, M. Chiang, M. Barysheva, A. Toga, K. Mcmahon, G. Zubicaray, M. Wright, P. Thompson
High-angular resolution diffusion imaging (HARDI) can reconstruct fiber pathways in the brain with extraordinary detail, identifying anatomical features and connections not seen with conventional MRI. HARDI overcomes several limitations of standard diffusion tensor imaging, which fails to model diffusion correctly in regions where fibers cross or mix. As HARDI can accurately resolve sharp signal peaks in angular space where fibers cross, we studied how many gradients are required in practice to compute accurate orientation density functions, to better understand the trade-off between longer scanning times and more angular precision. We computed orientation density functions analytically from tensor distribution functions (TDFs) which model the HARDI signal at each point as a unit-mass probability density on the 6D manifold of symmetric positive definite tensors. In simulated two-fiber systems with varying Rician noise, we assessed how many diffusion-sensitized gradients were sufficient to (1) accurately resolve the diffusion profile, and (2) measure the exponential isotropy (EI), a TDF-derived measure of fiber integrity that exploits the full multidirectional HARDI signal. At lower SNR, the reconstruction accuracy, measured using the Kullback-Leibler divergence, rapidly increased with additional gradients, and EI estimation accuracy plateaued at around 70 gradients.
高角度分辨率扩散成像(HARDI)可以非常详细地重建大脑中的纤维通路,识别传统MRI看不到的解剖特征和连接。HARDI克服了标准扩散张量成像的几个限制,不能正确地模拟纤维交叉或混合区域的扩散。由于HARDI可以准确地分辨光纤交叉的角空间中的尖锐信号峰值,我们研究了在实践中需要多少梯度来计算准确的方向密度函数,以更好地理解更长扫描时间和更高角精度之间的权衡。我们从张量分布函数(tdf)解析计算方向密度函数,该函数将每个点的HARDI信号建模为对称正定张量的6D流形上的单位质量概率密度。在具有不同噪声的模拟双光纤系统中,我们评估了多少扩散敏感梯度足以(1)准确解析扩散剖面,(2)测量指数各向同性(EI),这是一种利用全多向HARDI信号的tdf衍生的光纤完整性度量。在较低信噪比下,利用Kullback-Leibler散度测量的重建精度随着梯度的增加而迅速增加,EI估计精度在70梯度左右趋于稳定。
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引用次数: 11
Automatic embryonic stem cells detection and counting method in fluorescence microscopy images 荧光显微镜图像中胚胎干细胞的自动检测和计数方法
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193170
G. M. Faustino, M. Gattass, S. Rehen, C. Lucena
In this paper, we propose an automatic embryonic stem cell detection and counting method for fluorescence microscopy images. We handle with pluripotent stem cells cultured in vitro. Our approach uses the luminance information to generate a graph-based image representation. Next, a graph mining process is used to detect the cells. The proposed method was extensively tested on a database of 92 images and specialists validated the results. We obtained an average precision, recall and F-measure of 93.97%, 92.04% and 92.87%, respectively.
在本文中,我们提出了一种胚胎干细胞荧光显微镜图像自动检测和计数方法。我们处理体外培养的多能干细胞。我们的方法使用亮度信息来生成基于图形的图像表示。接下来,使用图挖掘过程来检测单元。该方法在一个包含92张图像的数据库上进行了广泛的测试,专家验证了结果。平均精密度、召回率和f测量值分别为93.97%、92.04%和92.87%。
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引用次数: 51
Robust vessel registration and tracking of microscope video images in tumor resection neurosurgery 肿瘤切除神经外科中显微镜视频图像的鲁棒血管配准与跟踪
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193234
S. Ding, M. Miga, R. Thompson, B. Dawant
This paper proposes a new method designed to track operative microscope video images recorded during tumor resection neurosurgery. Two steps are involved in this method. The first uses feature vectors constructed from color information of video images and shape information of selected vessels to find homologous points in consecutive frames. The second uses smoothing thin-plate splines (TPS) to interpolate the transformation computed with the vessels over the entire image. This approach only requires several pairs of starting and ending points selected on segments of vessels in the first frame of a video sequence. Then, the proposed method tracks the identified vessels automatically, rapidly, and robustly, even when surgical instruments obscure parts of the image frames.
本文提出了一种神经外科肿瘤切除过程中手术显微镜视频图像跟踪的新方法。这个方法包括两个步骤。第一种方法是利用视频图像的颜色信息和所选血管的形状信息构造特征向量,在连续的帧中寻找同源点。第二种方法使用平滑薄板样条(TPS)插值计算出的血管在整个图像上的变换。这种方法只需要在视频序列的第一帧的血管片段上选择几对起点和终点。然后,该方法可以自动、快速、鲁棒地跟踪已识别的血管,即使手术器械模糊了图像帧的部分。
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引用次数: 5
In vivo examination of human lipomas with freehand elastography - Preliminary results 用徒手弹性成像对人脂肪瘤的体内检查-初步结果
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193264
E. Brusseau, O. Basset
In the context of ultrasound elastography, we recently developed a 2D strain estimation method to image the deformation of a medium during its compression with the probe. This technique was proved to provide good-quality strain images with data acquired in a freehand configuration on elastography-dedicated phantoms and ex vivo dog tissue lesions. In this study, the application to in vivo human benign tumors is presented. The initial results obtained demonstrate that our method is able to provide easily interpretable deformation images in clinical conditions.
在超声弹性成像的背景下,我们最近开发了一种二维应变估计方法来成像介质在其压缩过程中的变形与探头。该技术已被证明可以提供高质量的应变图像,数据采集于弹性成像专用的徒手配置和离体狗组织病变。在本研究中,介绍了其在人体内良性肿瘤中的应用。初步结果表明,我们的方法能够在临床条件下提供易于解释的变形图像。
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引用次数: 1
Spatio-temporal image registration for respiratory motion correction in PET imaging PET成像中呼吸运动校正的时空图像配准
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193075
Wenjia Bai, M. Brady
Positron emission tomography (PET) is a molecular imaging technique which is now widely established as a powerful tool for diagnosing a variety of cancers. However, PET images are substantially degraded by respiratory motion to the extent that this may adversely impact upon subsequent diagnosis and patientmanagement. A spatio-temporal image registration algorithm is proposed to align the moving images and correct for motion. Compared to the conventional spatial registration, the proposed algorithm has the potential to yield more accurate motion. Experimental results show that motion correction using the spatio-temporal registration algorithm significantly improves the PET image quality.
正电子发射断层扫描(PET)是一种分子成像技术,目前已被广泛确立为诊断各种癌症的有力工具。然而,由于呼吸运动,PET图像会大大降低,这可能会对随后的诊断和患者管理产生不利影响。提出了一种用于运动图像对齐和运动校正的时空图像配准算法。与传统的空间配准相比,该算法具有产生更精确运动的潜力。实验结果表明,采用时空配准算法进行运动校正后,PET图像质量得到了显著提高。
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引用次数: 9
Image-based structure-to-function correlation of tissue engineering scaffolds 基于图像的组织工程支架结构-功能相关性研究
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193117
S. Rajagopalan, R. Robb
Tissue engineering is an interdisciplinary effort aimed at the repair and regeneration of biological tissues through the application and control of cells, porous scaffolds and growth factors. While there is a general intuitive consensus on the influence of scaffold architecture on the regeneration of tissues, the specific magnitude of these architectural indices are loosely defined. This paper investigates the application of image-based metrology and traditional wet-lab studies to understand cellular responses and phenotype expression to scaffold microarchitecture. Unraveling the symbiotic structure-to-function relationship of scaffolds might have profound implications leading to the deployment of benchside tissue analogs to the clinical bedside.
组织工程是一门跨学科的研究,旨在通过应用和控制细胞、多孔支架和生长因子来修复和再生生物组织。虽然对支架结构对组织再生的影响有一个普遍的直觉共识,但这些结构指标的具体大小是松散定义的。本文研究了基于图像的计量学和传统湿实验室研究的应用,以了解细胞对支架微结构的反应和表型表达。揭示支架的共生结构-功能关系可能具有深远的意义,导致将台式组织类似物部署到临床床边。
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引用次数: 1
Learning disease severity for capsule endoscopy images 了解疾病严重程度的胶囊内窥镜图像
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193306
R. Kumar, P. Rajan, Srdan Bejakovic, S. Seshamani, G. Mullin, T. Dassopoulos, Gregory Hager
Wireless capsule endoscopy (CE) is increasing being used to assess several gastrointestinal(GI) diseases and disorders. Current clinical methods are based on subjective evaluation of images. In this paper, we develop a method for ranking lesions appearing in CE images. This ranking is based on pairwise comparisons among representative images supplied by an expert. With such sparse pairwise rank information for a small number of images, we investigate methods for creating and evaluating global ranking functions. In experiments with CE images, we train statistical classifiers using color and edge feature descriptors extracted frommanually annotated regions of interest. Experiments on a data set using Crohn's disease lesions for lesion severity are presented with the developed ranking functions achieve high accuracy rates.
无线胶囊内窥镜(CE)越来越多地用于评估几种胃肠道(GI)疾病和失调。目前的临床方法是基于对图像的主观评价。在本文中,我们开发了一种方法来排序病变出现在CE图像。这个排名是基于专家提供的代表性图像的两两比较。利用少量图像的稀疏成对排序信息,我们研究了创建和评估全局排序函数的方法。在CE图像的实验中,我们使用从手动注释的感兴趣区域提取的颜色和边缘特征描述符来训练统计分类器。在克罗恩病病变严重程度的数据集上进行了实验,所开发的排序函数达到了较高的准确率。
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引用次数: 11
Strategies to jointly optimize spect collimator and reconstruction parameters for a detection task 针对一项检测任务,联合优化视像准直器和重建参数的策略
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193067
Lili Zhou, S. Kulkarni, Bin Liu, G. Gindi
In systems like SPECT, raw data is obtained by the imaging system and then reconstructed and viewed by a human observer. We compare two approaches to optimizing SPECT for a detection task with a known signal in a statistically varying background. In a sequential approach, we optimize the collimator using an ideal observer applied to the sinogram. We then optimize the regularization of the reconstruction using a human-emulating channelized Hotelling observer (CHO). In a second approach, we use the CHO to jointly optimize the collimator and regularization. The performance of the joint approach exceeds that of the sequential approach. The collimator properties from the joint approach are closer to that of a commercial collimator than those of the sequential approach. Thus using the “best” collimator derived by an ideal observer leads to suboptimal net detection performance.
在像SPECT这样的系统中,原始数据由成像系统获得,然后由人类观察者重建和查看。我们比较了两种方法来优化SPECT检测任务与一个已知的信号在统计变化的背景。在顺序方法中,我们使用应用于正弦图的理想观测器来优化准直器。然后,我们使用仿人信道化霍特林观测器(CHO)优化重构的正则化。在第二种方法中,我们使用CHO来联合优化准直器和正则化。联合方法的性能优于顺序方法。联合方法的准直器性质比顺序方法的准直器性质更接近于商用准直器的性质。因此,使用由理想观测器导出的“最佳”准直器会导致次优的网络检测性能。
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引用次数: 10
Ultrastructural mapping of neural circuitry: A computational framework 神经回路的超微结构映射:一个计算框架
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193257
James R. Anderson, B. Jones, Jia-Hui Yang, M. V. Shaw, C. Watt, P. Koshevoy, J. Spaltenstein, E. Jurrus, K. Venkataraju, R. Whitaker, D. Mastronarde, T. Tasdizen, R. Marc
Complete mapping of neuronal networks requires data acquisition at synaptic resolution with canonical coverage of tissues and robust neuronal classification. Transmission electron microscopy (TEM) remains the optimal tool for network mapping. However, capturing high resolution, large, serial section TEM (ssTEM) image volumes is complicated by the need to precisely mosaic distorted image tiles and subsequently register distorted mosaics. Moreover, most cell or tissue class markers are not optimized for TEM imaging. We present a complete framework for neuronal reconstruction at ultrastructural resolution, allowing the elucidation of complete neuronal circuits. This workflow combines TEM-compliant small molecule profiling with automated image tile mosaicking, automated slice-to-slice image registration and terabyte-scale image browsing for volume annotation. Networks that previously would require decades of assembly can now be completed in months, enabling large-scale connectivity analyses of both new and legacy data. Additionally, these approaches can be extended to other tissue or biological network systems.
完整的神经元网络映射需要在突触分辨率上获取数据,具有典型的组织覆盖和强大的神经元分类。透射电子显微镜(TEM)仍然是网络测绘的最佳工具。然而,由于需要精确地拼接扭曲的图像块并随后对扭曲的拼接进行配准,因此捕获高分辨率,大,串行切片TEM (system)图像体积变得复杂。此外,大多数细胞或组织类标记物不适合TEM成像。我们提出了一个完整的框架,神经元重建在超微结构分辨率,允许完整的神经元电路的阐明。该工作流程结合了符合tem标准的小分子分析、自动图像拼接、自动切片到切片图像配准和tb级图像浏览,以进行体积注释。以前需要数十年组装的网络现在可以在几个月内完成,从而可以对新数据和遗留数据进行大规模连接分析。此外,这些方法可以扩展到其他组织或生物网络系统。
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引用次数: 4
期刊
2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro
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