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2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro最新文献

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Locally constrained cubic B-spline deformations to control volume variations 局部约束的三次b样条变形控制体积变化
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193219
J. Dauguet, A. Hérard, J. Declerck, T. Delzescaux
It is implicitly assumed in most non-rigid registration methods that either corresponding structures can be found in both images, or that the regularization associated with the class of transformations chosen produce pertinent deformations elsewhere. However, when the images to register have a different contrast and resolution (e.g. in vivo / post mortem), or to minimize the deformation of some specific tissues (e.g. tumor, bones), it is necessary to have local control on the displacement field in these regions. We propose in this work an original registration method based on cubic B-spline transformations which allows to bound the variation of volume induced by the estimated transformation (variation of the determinant of the Jacobian of the transformation relatively to 1) in a predefined region. Lagrange multipliers are used to perform the constrained minimization of mutual information. We tested our method on artificial images with different tolerances on the volume variation and on one real 3D image: it performed efficiently while respecting the constraints.
在大多数非刚性配准方法中隐含地假设,要么在两个图像中都可以找到相应的结构,要么与所选变换类相关的正则化在其他地方产生相关的变形。然而,当待配准的图像具有不同的对比度和分辨率时(如体内/死后),或者为了使某些特定组织(如肿瘤、骨骼)的变形最小化,就需要对这些区域的位移场进行局部控制。在这项工作中,我们提出了一种基于三次b样条变换的原始配准方法,该方法允许在预定义区域内约束由估计变换引起的体积变化(变换的雅可比矩阵的行列式相对于1的变化)。拉格朗日乘法器用于互信息的约束最小化。我们在具有不同体积变化公差的人工图像和一个真实的3D图像上测试了我们的方法:它在尊重约束的情况下执行有效。
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引用次数: 9
3D eigenfunction expansion of sparsely sampled 2D cortical data 稀疏采样二维皮质数据的三维特征函数展开
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5192996
M. Chung, Yu-Chien Wu, A. Alexander
Various cortical measures such as cortical thickness are routinely computed along the vertices of cortical surface meshes. These metrics are used in surface-based morphometric studies. If one wishes to compare the surface-based morphometric studies to 3D volume-based studies at a voxel level, 3D interpolation of the sparsely sampled 2D cortical data is needed. In this paper, we have developed a new computational framework for explicitly representing sparsely sampled cortical data as a linear combination of eigenfunctions of the 3D Laplacian. The eigenfunctions are expressed as the product of spherical Bessel functions and spherical harmonics. The coefficients of the expansion are estimated in the least squares fashion iteratively by breaking the problem into smaller subproblems to reduce a computational bottleneck.
各种皮质测量,如皮质厚度,通常沿着皮质表面网格的顶点计算。这些指标用于基于表面的形态测量学研究。如果希望在体素水平上将基于表面的形态测量学研究与基于3D体积的研究进行比较,则需要对稀疏采样的2D皮质数据进行3D插值。在本文中,我们开发了一种新的计算框架,用于将稀疏采样的皮质数据显式表示为三维拉普拉斯特征函数的线性组合。特征函数表示为球面贝塞尔函数与球面谐波的乘积。通过将问题分解为更小的子问题,以最小二乘的方式迭代估计展开系数,以减少计算瓶颈。
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引用次数: 2
Time resolved fluorescence diffuse optical tomography using multi-resolution exponential B-splines 使用多分辨率指数b样条的时间分辨荧光漫射光学层析成像
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193007
N. Ducros, A. Silva, J. Dinten, C. Seelamantula, M. Unser, F. Peyrin
This paper deals with the problem of time-resolved fluorescence diffuse optical tomography. We propose a new reconstruction scheme based on a multi-resolution approximation of the time-resolved signals. The underlying basis functions are exponential B-splines that are matched to the decay of fluorescence signals. We illustrate the applicability of the method on phantom data.
本文研究了时间分辨荧光漫射光学层析成像问题。我们提出了一种基于时间分辨信号的多分辨率近似的重建方案。底层基函数是与荧光信号衰减相匹配的指数b样条。我们举例说明了该方法在模拟数据上的适用性。
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引用次数: 3
2D/3D registration of micro-CT data to multi-view photographs based on a 3D distance map 基于三维距离图的微ct数据与多视图照片的二维/三维配准
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193220
M. Wildeman, M. Baiker, J. Reiber, C. Löwik, M. Reinders, B. Lelieveldt
In this work we present a method for registration of a CT-derived mouse skin surface to two or more 2D, geometrically calibrated, photographs of the same animal using a similarity transformation model. We show that by using a 3D distance map, which is reconstructed from the animal skin silhouettes in the 2D photographs, and by penalizing large angle differences between distance map gradients and CT-based skin surface normals, we are able to construct a registration criterion that is robust to silhouette outliers and yields accurate results for synthetic and real data (mean skin surface distance 0.12mm and 1.35mm respectively).
在这项工作中,我们提出了一种方法,使用相似变换模型将ct衍生的小鼠皮肤表面注册到同一动物的两个或多个二维,几何校准的照片。我们表明,通过使用从2D照片中的动物皮肤轮廓重建的3D距离图,并通过对距离图梯度和基于ct的皮肤表面法线之间的大角度差异进行校正,我们能够构建一个对轮廓异常值具有鲁棒性的配准准则,并对合成和真实数据(平均皮肤表面距离分别为0.12mm和1.35mm)产生准确的结果。
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引用次数: 15
Texture-based characterization of arterialization in simulated MRI of hypervascularized liver tumors 模拟高血管化肝脏肿瘤MRI中动脉化的纹理特征
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5192991
M. Mescam, M. Kretowski, J. Bézy-Wendling
The use of quantitative imaging for the characterization of hepatic tumors in MRI can improve the diagnosis and therefore the treatment. However, image parameters remain difficult to interpret because they result from a mixture of complex processes related to pathophysiology and to acquisition. In particular, the lesion arterialization is prominent in the resulting contrast between normal and tumoral tissues in contrast-enhanced images. In order to identify this influence, we propose a multiscale model of liver dynamic contrast-enhanced MRI, consisting of a model of the organ coupled with a model of the image acquisition. A sensitivity analysis of the model to the arterial flow has enabled us to emphasize the existence of relationships between texture parameters in simulated arterial-phase MR images, and the arterialization phenomena involved in carcinogenesis.
在MRI中使用定量成像来表征肝脏肿瘤可以提高诊断,从而提高治疗。然而,图像参数仍然难以解释,因为它们是由与病理生理学和采集相关的复杂过程混合产生的。特别是,在对比增强图像中,病变动脉化在正常组织和肿瘤组织的对比中是突出的。为了确定这种影响,我们提出了一个肝脏动态对比增强MRI的多尺度模型,由器官模型和图像采集模型组成。该模型对动脉血流的敏感性分析使我们能够强调模拟动脉期MR图像中纹理参数与癌变中动脉化现象之间存在的关系。
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引用次数: 0
A-contrario localization of epileptogenic zones in SPECT images SPECT图像中致痫区的反向定位
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193111
C. Aguerrebere, P. Sprechmann, P. Musé, R. Ferrando
In refractory epilepsy, the goal of neuroimaging is to localize the region of seizure onset. Tracers that accumulate and remain fixed proportional to regional cerebral blood flow (rCBF) at the time of injection are used to obtain SPECT images of the brain activity during and between seizures. The most used technique for detecting the epileptogenic zone (EZ) is to threshold the co-registered and normalized subtraction of these two images. This method has proven to be very useful but has some disadvantages: result depends on the selected threshold and abundance of false detections. In this paper we propose an a-contrario algorithm for detecting regions of the brain with significant changes in the rCBF using two SPECT images. This new method arises from formal deduction and no arbitrary parameters are involved. Comparisons of both methodologies on six patients are presented. The proposed algorithm shows good results in all cases and is more robust than the thresholding method.
在难治性癫痫中,神经影像学的目标是定位癫痫发作的区域。示踪剂在注射时累积并保持固定比例的区域脑血流量(rCBF),用于获得癫痫发作期间和发作之间的大脑活动的SPECT图像。检测癫痫区最常用的方法是对两幅图像进行共配准和归一化相减,并对其进行阈值处理。该方法已被证明是非常有用的,但也有一些缺点:结果取决于所选择的阈值和假检测的丰度。在本文中,我们提出了一种反向算法,用于检测大脑区域与显著变化的rCBF使用两个SPECT图像。该方法由形式演绎而来,不涉及任意参数。比较两种方法在六个病人提出。该算法在所有情况下都显示出良好的结果,并且比阈值法具有更强的鲁棒性。
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引用次数: 7
Cell tracking and segmentation in electron microscopy images using graph cuts 使用图切割的电子显微镜图像中的细胞跟踪和分割
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193045
Huei-Fang Yang, Y. Choe
Understanding neural connectivity and structures in the brain requires detailed 3D anatomical models, and such an understanding is essential to the study of the nervous system. However, the reconstruction of 3D models from a large set of dense nanoscale medical images is very challenging, due to the imperfections in staining and noise in the imaging process. Manual segmentation in 2D followed by tracking the 2D contours through cross-sections to build 3D structures can be a solution, but it is impractical. In this paper, we propose an automated tracking and segmentation framework to extract 2D contours and to trace them through the z direction. The segmentation is posed as an energy minimization problem and solved via graph cuts. The energy function to be minimized contains a regional term and a boundary term. The regional term is defined over the flux of the gradient vector fields and the distance function. Our main idea is that the distance function should carry the information of the segmentation from the previous image based on the assumption that successive images have a similar segmentation. The boundary term is defined over the gray-scale intensity of the image. Experiments were conducted on nanoscale image sequences from the Serial Block Face Scanning Electron Microscope (SBF-SEM). The results show that our method can successfully track and segment densely packed cells in EM image stacks.
了解大脑中的神经连接和结构需要详细的3D解剖模型,而这样的理解对神经系统的研究至关重要。然而,由于成像过程中的染色缺陷和噪声,从大量密集的纳米医学图像中重建三维模型非常具有挑战性。在2D中进行手动分割,然后通过横截面跟踪2D轮廓以构建3D结构可以是一种解决方案,但不切实际。在本文中,我们提出了一种自动跟踪和分割框架来提取二维轮廓,并通过z方向跟踪它们。将分割作为能量最小化问题,并通过图切割来解决。要最小化的能量函数包含一个区域项和一个边界项。区域项是在梯度矢量场的通量和距离函数上定义的。我们的主要思想是,在连续图像具有相似分割的假设下,距离函数应该携带前一图像的分割信息。边界项是在图像的灰度强度上定义的。对连续块面扫描电子显微镜(SBF-SEM)的纳米级图像序列进行了实验。结果表明,该方法可以成功地跟踪和分割EM图像堆栈中密集排列的细胞。
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引用次数: 36
A new consistent image registration formulation with a B-spline deformation model 一种新的基于b样条变形模型的一致图像配准公式
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193218
Wei Feng, S. Reeves, T. Denney, S. Lloyd, L. Dell’Italia, H. Gupta
A consistent image registration formulation with B-spline deformation model is proposed. This formulation avoids the computation of the inverse of a deformation in the iterative optimization and allows the analytical computation of both gradient and Hessian of the cost function. Because of the formulation, the algorithm is computationally efficient and could potentially produce more accurate registration results. Experiments show that the proposed algorithm produces promising results while keeping the estimated deformations consistent.
提出了一种基于b样条变形模型的一致图像配准公式。该公式避免了迭代优化中变形逆的计算,并允许梯度和代价函数的Hessian的解析计算。由于该公式,该算法计算效率高,可能产生更准确的配准结果。实验表明,该算法在保持估计变形一致的情况下,取得了较好的效果。
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引用次数: 16
Endomicroscopic image retrieval and classification using invariant visual features 基于不变视觉特征的内镜图像检索与分类
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193055
Barbara André, Tom Kamiel Magda Vercauteren, A. Perchant, A. Buchner, M. Wallace, N. Ayache
This paper investigates the use of modern content based image retrieval methods to classify endomicroscopic images into two categories: neoplastic (pathological) and benign. We describe first the method that maps an image into a visual feature signature which is a numerical vector invariant with respect to some particular classes of geometric and intensity transformations. Then we explain how these signatures are used to retrieve from a database the k closest images to a new image. The classification is finally achieved through a procedure of votes weighted by a proximity criterion (weighted k-nearest neighbors). Compared with several previously published alternatives whose maximal accuracy rate is almost 67% on the database, our approach yields an accuracy of 80% and offers promising perspectives.
本文研究了使用现代基于内容的图像检索方法将内镜图像分为两类:肿瘤(病理)和良性。我们首先描述了将图像映射到视觉特征签名的方法,该特征签名是相对于某些特定类别的几何和强度变换的数值向量不变量。然后,我们解释如何使用这些签名从数据库中检索与新图像最接近的k个图像。分类最终通过一个由邻近标准(加权k近邻)加权的投票过程来实现。与之前发表的几种替代方法相比,它们在数据库上的最大准确率接近67%,我们的方法产生了80%的准确率,并提供了很有希望的前景。
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引用次数: 34
Lesion-specific coronary artery calcium quantification better predicts cardiac events 病变特异性冠状动脉钙定量能更好地预测心脏事件
Pub Date : 2009-06-28 DOI: 10.1109/ISBI.2009.5193027
Z. Qian, Idean Marvasty, Hunt Anderson, S. Rinehart, S. Voros
CT-based coronary artery calcium (CAC) scanning has been introduced as a non-invasive, low-radiation imaging technique for the assessment of the overall coronary arterial atherosclerotic burden. A three dimensional CAC volume contains significant clinically relevant information, which is unused by conventional whole-heart CAC quantification methods. In this paper, we have developed a more detailed distance-weighted lesion-specific CAC quantification framework that predicts cardiac events better than the conventional whole-heart CAC measures. This framework consists of (1) a novel lesion-specific CAC quantification tool that measures each calcific lesion's attenuation, morphologic and geometric statistics; (2) a distance-weighted event risk model to estimate the risk probability caused by each lesion, and (3) a Naive Bayesian technique for risk integration. We have tested our lesion-specific event predictor on 30 CAC positive scans (10 with events and 20 without events), and compared it with conventional whole-heart CAC scores. Experiment results showed our novel approach significantly improves the prediction accuracy, including AUC of ROC analysis was improved from 66 ∼ 68% to 75%, and sensitivities was improved by 20 ∼ 30% at the cutpoints of 80% specificity.
基于ct的冠状动脉钙(CAC)扫描作为一种无创、低辐射的成像技术被引入,用于评估冠状动脉粥样硬化的整体负担。三维CAC体积包含重要的临床相关信息,这是传统的全心CAC定量方法所没有的。在本文中,我们开发了一个更详细的距离加权病变特异性CAC量化框架,该框架比传统的全心CAC测量更好地预测心脏事件。该框架包括:(1)一种新的病变特异性CAC量化工具,用于测量每个钙化病变的衰减、形态和几何统计;(2)用距离加权事件风险模型估计各损伤引起的风险概率;(3)用朴素贝叶斯技术进行风险整合。我们在30次CAC阳性扫描(10次有事件,20次无事件)上测试了病变特异性事件预测器,并将其与传统的全心CAC评分进行了比较。实验结果表明,我们的新方法显着提高了预测精度,包括ROC分析的AUC从66 ~ 68%提高到75%,灵敏度在80%特异性的切点上提高了20 ~ 30%。
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引用次数: 6
期刊
2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro
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