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Redirecting the host immune response to bacterial infection with antibody-recruiting molecules (ARMs) 用抗体招募分子(ARMs)重定向宿主对细菌感染的免疫反应。
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-03-20 DOI: 10.1016/j.cbpa.2025.102585
Priscilla Dzigba , Megan A. Seth , Mallary C. Greenlee-Wacker , Benjamin M. Swarts
The increasing prevalence of antibiotic resistance, the stagnation of antibiotic development, and the adaptive capacity of bacteria to subvert the host immune response combine to pose significant global health concerns. Consequently, there is an urgent need to develop alternative therapeutic approaches to combat bacterial infections. Antibody-recruiting molecules (ARMs), which are bispecific small molecules that recruit endogenous antibodies to pathogenic cells or viruses, offer a promising avenue to harness the host immune system to target various diseases. In this review, we cover ARM strategies that have been developed for bacterial pathogens, including Gram-positive bacteria, Gram-negative bacteria, and mycobacteria, and we discuss the prospects and challenges of utilizing ARMs as alternatives to traditional antibiotic therapies.
抗生素耐药性的日益普遍,抗生素开发的停滞不前,以及细菌破坏宿主免疫反应的适应能力,共同构成了重大的全球健康问题。因此,迫切需要开发替代治疗方法来对抗细菌感染。抗体招募分子(ARMs)是一种双特异性小分子,可招募针对致病细胞或病毒的内源性抗体,为利用宿主免疫系统靶向各种疾病提供了一条有希望的途径。在这篇综述中,我们介绍了针对细菌病原体(包括革兰氏阳性菌、革兰氏阴性菌和分枝杆菌)开发的ARM策略,并讨论了利用ARM作为传统抗生素治疗的替代方案的前景和挑战。
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引用次数: 0
Noncytotoxic catalytic enzyme functional mimics including cyanide poisoning antidotes 非细胞毒性催化酶功能模拟物,包括氰化物中毒解毒剂
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-03-12 DOI: 10.1016/j.cbpa.2025.102584
Sigridur G. Suman
Functional mimics of enzymes have a long history with bioinorganic chemists. Early motivation for creating these mimics was strongly based on the study of the enzyme reaction mechanisms. In more recent times, interest in functional mimics has expanded to catalytic metallodrugs, where the mimics are deliberately designed for specific catalytic reactions intended for therapeutic purposes. In vivo, noncytotoxic catalysis targets reactions designed to activate prodrugs. Natural or de novo proteins were developed for artificial enzyme catalysis of Diels–Alder reactions, or as artificial oxygenase mimics. Novel sulfur-rich catalytic superoxide dismutase (SOD) mimics were discovered as antioxidants. Detoxification of elevated levels of cyanide where the natural rhodanese enzyme becomes inefficient in turnover rates and bioavailability is particularly attractive for sulfur-rich molybdenum clusters. This brief overview includes metal catalysts performing abiotic reactions in vivo disguised by attachment to cell surfaces, as artificial enzymes, and interesting new sulfur-rich complexes performing SOD reactions or neutralizing cyanide.
酶的功能模拟在生物无机化学家中有着悠久的历史。创建这些模仿物的早期动机是基于对酶反应机制的研究。在最近的时代,对功能模拟的兴趣已经扩展到催化金属药物,其中模拟被故意设计用于治疗目的的特定催化反应。在体内,非细胞毒性催化作用针对旨在激活前药的反应。天然或新生蛋白被开发用于Diels-Alder反应的人工酶催化,或作为人工加氧酶模拟物。新的富硫催化超氧化物歧化酶(SOD)模拟物被发现作为抗氧化剂。当天然罗丹斯酶在周转率和生物利用度方面变得低效时,对氰化物水平升高的解毒对富含硫的钼簇特别有吸引力。本文简要介绍了通过附着在细胞表面进行体内非生物反应的金属催化剂,如人工酶,以及进行SOD反应或中和氰化物的有趣的新型富硫配合物。
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引用次数: 0
Stimuli-responsive synthetic ionophores for therapeutic applications 刺激反应性合成离子载体的治疗应用
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-03-03 DOI: 10.1016/j.cbpa.2025.102582
Sandip Chattopadhayay, Pinaki Talukdar
Nature endowed different structurally and functionally complex transmembrane transporters to flux the ions to maintain the healthy functions of the cells by turning on or turning off the ion flow in the presence of external stimuli. Mimicking this stimuli-responsive behavior of natural transporters using synthetic analogs is currently an ongoing interest in the scientific community. This short review highlights the recent development of synthetic responsive ionophore systems. This includes pH, light, redox, enzyme, and multi-stimuli-controlled ionophores systems that have the potential to be utilized in different biomedical applications ranging from antibacterial activity to anticancer activity.
大自然赋予不同结构和功能复杂的跨膜转运体在外界刺激下通过开启或关闭离子流来输送离子,维持细胞的健康功能。利用合成类似物模拟天然转运体的这种刺激反应行为是目前科学界持续关注的问题。本文简要介绍了近年来合成响应性离子载体系统的研究进展。这包括pH、光、氧化还原、酶和多刺激控制的离子载体系统,这些系统具有从抗菌活性到抗癌活性等不同生物医学应用的潜力。
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引用次数: 0
Corrigendum to “Enabling structural biological electron paramagnetic resonance spectroscopy in membrane proteins through spin labelling” Curr Opin Chem Biol 84 (2025) 102564 “通过自旋标记在膜蛋白中启用结构生物电子顺磁共振波谱”的勘误表《化学生物》84 (2025)102564
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-26 DOI: 10.1016/j.cbpa.2025.102583
Anokhi Shah , Joshua L. Wort , Yue Ma , Christos Pliotas
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引用次数: 0
Lipid probes to study ion channels 脂质探针研究离子通道
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-19 DOI: 10.1016/j.cbpa.2025.102581
Helene Jahn , Show-Ling Shyng , Carsten Schultz
Lipids can have specific interaction partners and act as small molecule regulators of proteins, especially for transmembrane proteins. Transmembrane proteins, such as ion channels, can be influenced by lipids in four ways; lipids can be direct ligands, localize effector proteins or domains, affect protein–protein interaction, or change the biophysical properties of the surrounding membrane. In this article, we will give examples of how lipids directly interact with ion channels and address the complex aspect of indirect regulation via lipids of the surrounding membrane bilayer. In addition, we discuss current and propose future molecular tools and experiments elucidating the many roles lipids play in ion channel function.
脂质可以有特定的相互作用伙伴,并作为蛋白质的小分子调节剂,特别是跨膜蛋白质。跨膜蛋白,如离子通道,可以通过四种方式受到脂质影响;脂质可以是直接的配体,定位效应蛋白或结构域,影响蛋白-蛋白相互作用,或改变周围膜的生物物理性质。在本文中,我们将举例说明脂质如何直接与离子通道相互作用,并解决通过周围膜双分子层脂质间接调节的复杂方面。此外,我们还讨论了目前的分子工具和实验,并提出了未来的建议,以阐明脂质在离子通道功能中的许多作用。
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引用次数: 0
Illuminating antifungal mode of action and resistance with fluorescent probes 荧光探针阐明抗真菌作用方式及耐药性
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-17 DOI: 10.1016/j.cbpa.2025.102570
Moriah Jospe-Kaufman, Micha Fridman
The rise in fungal infections, driven by pathogens resistant to the limited scope of antifungal agents available, poses an increasing threat to global health and the economy. Addressing this challenge requires a thorough understanding of the mechanisms of antifungal agents and the development of advanced resistance diagnostic methods. This opinion manuscript highlights recent advancements in antifungal research, with a focus on chemical biology approaches, particularly the development of fluorescent probes derived from various antifungal agents. These probes reveal new aspects of antifungal activity and provide deeper insights into modes of action and resistance mechanisms. Live cell imaging of fungal pathogens labeled with these probes has uncovered novel strategies to enhance antifungal efficacy, understand virulence factors, and detect resistance. These unique small-molecule tools offer powerful new avenues for addressing the fungal infections crisis, harnessing chemical biology approaches to develop innovative solutions to the global challenges posed by fungi.
由于病原体对有限范围的可用抗真菌药物具有耐药性,真菌感染的增加对全球健康和经济构成越来越大的威胁。解决这一挑战需要彻底了解抗真菌药物的机制和开发先进的耐药性诊断方法。这份意见稿强调了抗真菌研究的最新进展,重点是化学生物学方法,特别是来自各种抗真菌剂的荧光探针的发展。这些探针揭示了抗真菌活性的新方面,并为作用模式和耐药机制提供了更深入的见解。用这些探针标记的真菌病原体的活细胞成像揭示了增强抗真菌功效、了解毒力因素和检测耐药性的新策略。这些独特的小分子工具为解决真菌感染危机提供了强大的新途径,利用化学生物学方法开发创新的解决方案,以应对真菌带来的全球挑战。
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引用次数: 0
Recent advances in high-throughput screening methods for small molecule modulators in bacteria 细菌小分子调节剂高通量筛选方法研究进展
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-14 DOI: 10.1016/j.cbpa.2025.102571
Hannah G. Addis , Erin E. Carlson
Bacterial infections, especially those that are resistant to antibiotics, constitute an increasing threat to public health. Deeper understanding about the systems that govern resistant infections, followed by the design of new therapies is crucial to minimizing morbidity and mortality due to antibacterial resistance. To this end, the discovery of small molecules capable of modulating bacterial processes is an important goal. Herein, we summarize recent developments in high-throughput screening, including the use of in vitro biochemical assays, reporter fusion read-out methods, and live cell phenotypic assays in bacteria. We also highlight key advantages and disadvantages of each assay type, as well as exciting new innovations.
细菌感染,特别是对抗生素具有耐药性的细菌感染,对公众健康构成日益严重的威胁。更深入地了解控制耐药感染的系统,然后设计新的治疗方法,对于最大限度地减少由于抗菌药物耐药性引起的发病率和死亡率至关重要。为此,发现能够调节细菌过程的小分子是一个重要的目标。在此,我们总结了高通量筛选的最新进展,包括体外生化分析、报告融合读出方法和细菌活细胞表型分析的使用。我们还强调了每种检测类型的主要优点和缺点,以及令人兴奋的新创新。
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引用次数: 0
Optogenetic engineering for ion channel modulation 离子通道调制的光基因工程
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-03 DOI: 10.1016/j.cbpa.2025.102569
Tianlu Wang , Tatsuki Nonomura , Tien-Hung Lan , Yubin Zhou
Optogenetics, which integrates photonics and genetic engineering to control protein activity and cellular processes, has transformed biomedical research. Its precise spatiotemporal control, minimal invasiveness, and tunable reversibility have spurred its widespread adoption in both basic and clinical research. Optogenetic techniques have been applied to partially restore vision in blind patients and are being actively explored as innovative treatments for neurological, psychiatric, cardiac, and immunological disorders. Microbial channelrhodopsins (ChRs) allow precise manipulation of neuronal and cardiac activities, while vertebrate rhodopsins offer unique opportunities for ion channel modulation through G-protein-coupled receptor (GPCR) pathways. Plant-derived photoswitchable domains can also be engineered into ion channels to confer photosensitivity. This review summarizes the latest progress in engineering genetically encoded light-sensitive ion channel actuators and modulators (GELICAMs) with diverse ion selectivity and spectral sensitivity. We further discuss the potential applications and challenges of these tools in advancing biomedical research and therapeutic interventions.
光遗传学结合了光子学和基因工程来控制蛋白质活性和细胞过程,已经改变了生物医学研究。其精确的时空控制、最小的侵入性和可调的可逆性促使其在基础和临床研究中广泛采用。光遗传技术已被应用于部分恢复失明患者的视力,并正在积极探索作为神经、精神、心脏和免疫疾病的创新治疗方法。微生物通道紫红质(ChRs)允许精确操纵神经元和心脏活动,而脊椎动物的紫红质通过g蛋白偶联受体(GPCR)途径为离子通道调节提供了独特的机会。植物衍生的光开关结构域也可以被设计成离子通道来赋予光敏性。本文综述了具有不同离子选择性和光谱灵敏度的基因编码光敏离子通道致动器和调制器(GELICAMs)的最新研究进展。我们进一步讨论了这些工具在推进生物医学研究和治疗干预方面的潜在应用和挑战。
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引用次数: 0
Developing photoactivated artificial enzymes for sustainable fuel production 开发用于可持续燃料生产的光激活人工酶。
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.cbpa.2024.102553
Ashlee E. Wertz , Hannah S. Shafaat
Enzymes catalyze molecular reactions with remarkable efficiency and selectivity under mild conditions. Photoactivated enzymes make use of a light-absorbing chromophore to drive chemical transformations, ideally using sunlight as an energy source. The direct attachment of a chromophore to native enzymes is advantageous, as information on the underlying catalytic mechanisms can be obtained. Artificial enzyme development seeks to mimic natural enzymes to generate valuable products with high efficiency in a simplified, robust framework. Light-initiated artificial enzymatic catalysis combines these strategies and represents a promising avenue for sustainable generation of value-added products. Furthermore, while early systems often combined three components for catalysis-- the enzyme, a photosensitizer, and a sacrificial electron donor-- we describe an adaptation of this approach in which the chromophore is immobilized on the enzyme, removing the need for diffusional collision. The latter is advantageous as it provides deeper insight into the catalytic mechanism and facilitates further optimization of the designed construct. In this opinion, we highlight several examples of light-driven, artificial metalloenzymes, and suggest that ongoing and future efforts should leverage prior mechanistic studies on native enzymes as a foundation for strategic design of next-generation photoactivated protein-based catalysts.
酶在温和条件下催化分子反应具有显著的效率和选择性。光激活酶利用吸收光的发色团来驱动化学转化,理想情况下使用阳光作为能量来源。发色团与天然酶的直接连接是有利的,因为可以获得有关潜在催化机制的信息。人工酶的发展旨在模仿天然酶,在简化、健壮的框架内高效地产生有价值的产品。光引发的人工酶催化结合了这些策略,代表了可持续产生增值产品的有前途的途径。此外,虽然早期的系统通常结合三种成分进行催化-酶,光敏剂和牺牲电子供体-我们描述了这种方法的适应性,其中发色团固定在酶上,消除了扩散碰撞的需要。后者是有利的,因为它提供了对催化机制的更深入的了解,并有利于进一步优化所设计的结构。在这种观点下,我们强调了几个光驱动的人工金属酶的例子,并建议正在进行的和未来的努力应该利用现有的天然酶的机制研究作为下一代光激活蛋白催化剂战略设计的基础。
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引用次数: 0
Bacterial peptidoglycan as a living polymer 细菌肽聚糖是一种活的聚合物。
IF 6.9 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.cbpa.2024.102562
Amr M. El-Araby, Jed F. Fisher, Shahriar Mobashery
The peptidoglycan manifests as a multifaceted component of the bacterial cell wall. Throughout the lifecycle of the bacterium, the peptidoglycan is deconstructed, rebuilt, and remodeled for bacterial cell growth and replication. Degradation products of the peptidoglycan serve as precursors for cell-wall building blocks via recycling processes and as signaling molecules. Cell-wall recycling and de novo cell-wall synthesis converge biochemically at the cytoplasmic compartment. Peptidoglycan biochemistry is finely tuned to maintain the polymer's functions and is intimately connected to antibiotic-resistance mechanisms. Cell-wall-modifying enzymes present a unique opportunity for the discovery of antibiotics and antibiotic adjuvants. The unique chemical template of the peptidoglycan has been a target of numerous chemical biology approaches for investigating its functions and modulation. In this review, we highlight the current perspective on peptidoglycan research. We present recent efforts to understand the peptidoglycan as a functional component of antibiotic resistance, and as a target for antimicrobial therapy.
肽聚糖是细菌细胞壁的多层面组成部分。在细菌的整个生命周期中,肽聚糖被分解、重建和重塑,以促进细菌细胞的生长和复制。肽聚糖的降解产物通过再循环过程成为细胞壁结构单元的前体和信号分子。细胞壁再循环和细胞壁从头合成在细胞质区进行生化交汇。肽聚糖的生物化学经过精细调整,以维持聚合物的功能,并与抗生素耐药性机制密切相关。细胞壁修饰酶为发现抗生素和抗生素佐剂提供了一个独特的机会。肽聚糖的独特化学模板一直是众多化学生物学方法研究其功能和调节的目标。在本综述中,我们将重点介绍肽聚糖研究的现状。我们介绍了最近为了解肽聚糖作为抗生素耐药性功能成分和抗菌治疗靶点所做的努力。
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引用次数: 0
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Current Opinion in Chemical Biology
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