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E. coli as a Smart Thermo-Vector for Combating Solid Tumors: A Synergistic Heat-Induced Cancer Therapy Approach
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 DOI: 10.1021/acs.bioconjchem.5c0010210.1021/acs.bioconjchem.5c00102
Tashmeen Kaur, Neeta Devi and Deepika Sharma*, 

Heat-induced cancer therapies such as magnetic hyperthermia-based cancer therapy (MHCT) and photothermal tumor ablation (PTT) have garnered significant attention as minimally invasive new-generation cancer therapy modalities. However, solid tumors associated with hypoxia present a considerable challenge to effective cancer therapy. In this study, we took up the challenge of mitigating the limiting penetration ability of nanoparticles by integrating polydopamine-coated magnetic nanoparticles and motile anaerobic bacteria (PDBs) to function as a smart thermo-vector. The developed PDBs are capable of self-navigating hypoxic tumors and as thermo-therapy agents with the ability to induce heat through exposure to an alternating magnetic field or near-infrared laser light. The thermo-vector system exhibited a dual-functioning synergistic antitumor effect of MHCT and PTT and an outstanding tumor targeting efficiency, outperforming the conventional ‘nanoparticles only’ approach. The heat-induced cellular oxidative stress and disrupted mitochondrial function led to 80% cellular cytotoxicity within 24 h of treatment. The PDB-based approach led to complete tumor regression in c57BL/6 mice within 21 days of treatment and a tumor-free survival for 60 days without recurrence, proving the capability of the developed PDBs in combatting solid tumors.

热诱导癌症疗法,如基于磁性热疗的癌症疗法(MHCT)和光热肿瘤消融术(PTT),作为微创的新一代癌症治疗模式,已引起广泛关注。然而,与缺氧相关的实体瘤给有效的癌症治疗带来了相当大的挑战。在这项研究中,我们将多巴胺涂层的磁性纳米粒子和厌氧运动细菌(PDBs)整合在一起,使其发挥智能热载体的作用,从而克服了纳米粒子渗透能力受限的难题。所开发的厌氧细菌能够自导航缺氧肿瘤,并可作为热疗剂,通过暴露在交变磁场或近红外激光下诱导发热。该热矢量系统具有 MHCT 和 PTT 的双重协同抗肿瘤作用,肿瘤靶向效率突出,优于传统的 "仅纳米颗粒 "方法。热诱导的细胞氧化应激和线粒体功能紊乱导致治疗 24 小时内 80% 的细胞毒性。基于 PDB 的方法使 c57BL/6 小鼠的肿瘤在治疗后 21 天内完全消退,并且无瘤生存 60 天,无复发,证明了所开发的 PDB 在抗击实体瘤方面的能力。
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引用次数: 0
Transfection via RNA-Based Nanoparticles: Comparing Encapsulation vs Adsorption Approaches of RNA Incorporation.
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 Epub Date: 2025-02-25 DOI: 10.1021/acs.bioconjchem.5c00028
Amy E Laturski, Maria T Dulay, Jillian L Perry, Joseph M DeSimone

Historically, RNA delivery via nanoparticles has primarily relied on encapsulation, as demonstrated by lipid nanoparticles in SARS-CoV-2 vaccines. Concerns about RNA degradation on nanoparticle surfaces initially limited the exploration of adsorption-based approaches. However, recent advancements have renewed interest in adsorption as a viable alternative. This Viewpoint explores the approaches of RNA incorporation in nanoparticles, comparing encapsulation, adsorption, and the combination of encapsulation and adsorption, and presents a framework to guide the selection of the most suitable strategy based on general characteristics.

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引用次数: 0
A Near-Infrared Fluorescent Macromolecular Dye for Precise Identification of Glioblastoma Boundaries.
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 Epub Date: 2025-02-26 DOI: 10.1021/acs.bioconjchem.5c00019
Jiale Si, Cheng Li, Xin Chen, Qinghao Zhou, Yueming Xue, Yuanyuan Ji, Yansong Dong, Zhishen Ge

Glioblastoma (GBM) is a highly invasive tumor with poorly defined boundaries, often leaving residual tissue after surgery, which contributes to the recurrence and poor prognosis. A critical challenge in GBM treatment is the precise identification of tumor boundaries during surgery to achieve a safe and complete resection. In this study, we present a novel near-infrared fluorescent agent, IR-PEG-cRGD, that is designed to accurately delineate GBM boundaries for surgical navigation of tumor resection. IR-PEG-cRGD is successfully prepared from the cyanine dye IR-820, which is conjugated to poly(ethylene glycol) (PEG) to prolong circulation time and enhance tumor accumulation. Additionally, a glioma-targeting peptide (cRGD, cyclo(Arg-Gly-Asp-d-Phe-Cys)) is conjugated to PEG to selectively target GBM. IR-PEG-cRGD demonstrates effective targeting and enrichment in subcutaneous human-derived GBM mice models, enabling specific distinguishing of the GBM margin from the surrounding parenchyma with a high signal-to-background ratio (SBR) of 4.79. Moreover, IR-PEG-cRGD can pass across the blood-brain barrier (BBB) efficiently. These findings indicate that IR-PEG-cRGD can serve as a valuable tool for the precise intraoperative delineation of GBM boundaries, aiding in safe and complete tumor resection.

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引用次数: 0
Lipid Nanocarriers as Precision Delivery Systems for Brain Tumors.
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 Epub Date: 2025-02-12 DOI: 10.1021/acs.bioconjchem.5c00007
Roshan Keshari, Mahima Dewani, Navneet Kaur, Girijesh Kumar Patel, Sumit Kumar Singh, Pranjal Chandra, Rajendra Prasad, Rohit Srivastava

Brain tumors, particularly glioblastomas, represent the most complicated cancers to treat and manage due to their highly invasive nature and the protective barriers of the brain, including the blood-brain barrier (BBB). The efficacy of currently available treatments, viz., radiotherapy, chemotherapy, and immunotherapy, are frequently limited by major side effects, drug resistance, and restricted drug penetration into the brain. Lipid nanoparticles (LNPs) have emerged as a promising and targeted delivery system for brain tumors. Lipid nanocarriers have gained tremendous attention for brain tumor therapeutics due to multiple drug encapsulation abilities, controlled release, better biocompatibility, and ability to cross the BBB. Herein, a detailed analysis of the design, mechanisms, and therapeutic benefits of LNPs in brain tumor treatment is discussed. Moreover, we also discuss the safety issues and clinical developments of LNPs and their current and future challenges. Further, we also focused on the clinical transformation of LNPs in brain tumor therapy by eliminating side effects and engineering the LNPs to overcome the related biological barriers, which provide personalized, affordable, and low-risk treatment options.

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引用次数: 0
Copper(II) Cyclopeptides with High ROS-Mediated Cytotoxicity.
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 Epub Date: 2025-03-10 DOI: 10.1021/acs.bioconjchem.4c00561
Sonia Boga, David Bouzada, Roi Lopez-Blanco, Axel Sarmiento, Iria Salvadó, David Alvar Gil, José Brea, María Isabel Loza, Natalia Barreiro-Piñeiro, José Martínez-Costas, Silvia Mena, Gonzalo Guirado, Alice Santoro, Peter Faller, M Eugenio Vázquez, Miguel Vázquez López

Cu(II) coordination complexes are emerging as promising anticancer agents due to their ability to induce oxidative stress through reactive oxygen species (ROS) generation. In this study, we synthesized and characterized two novel Cu(II) metallopeptide systems, 1/Cu(II) and 2/Cu(II), derived from the oligocationic bipyridyl cyclopeptides 1 and 2, and designed to enhance the transport of Cu(II) into cells and increase ROS levels. Spectroscopic and electrochemical analyses confirmed the formation of stable metallopeptide species in aqueous media. Inductively coupled plasma mass spectrometry (ICP-MS) studies demonstrated that both metallopeptides significantly increase intracellular Cu(II) accumulation in NCI/ADR-RES cancer cells, highlighting their role as efficient Cu(II) transporters. Additionally, ROS generation assays revealed that 1/Cu(II) induces a substantial increase in intracellular ROS levels, supporting the hypothesis of oxidative stress-induced cytotoxicity. Cell-viability assays further confirmed that both 1/Cu(II) and 2/Cu(II) exhibit strong anticancer activity in a number of cancer cell lines, with IC50 values significantly lower than those of their free cyclopeptide counterparts or Cu(II) alone, showing an order of activity higher than that of cisplatin. Finally, molecular modeling studies provided further insights into the structural stability and coordination environment of Cu(II) within the metallopeptide complexes. These findings suggest that these Cu(II) cyclometallopeptide systems hold potential as novel metal-based therapeutic agents, leveraging Cu(II) transport and ROS increase as key strategies for cancer treatment.

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引用次数: 0
Fluorescence-Based Simple and Practical Assay Method for DNA Damage Analysis in DNA-Encoded Library Synthesis. 基于荧光的DNA编码文库合成中DNA损伤分析的简单实用方法。
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 Epub Date: 2024-12-31 DOI: 10.1021/acs.bioconjchem.4c00483
Seungyoon Kang, Gyung A Kim, Myo Naing Win, Yeongcheol Ki, Hohjai Lee, Min Su Han

The dsDNA-selective fluorescent-dye-based DNA damage assay was developed for DNA-encoded library (DEL) synthesis. For the various DEL synthesis conditions, the assay was validated through cross-checking with high-performance liquid chromatography (HPLC) analysis, and the fact was confirmed that the usage of a specific ratio of organic solvent can critically induce DNA damage. Also, the applicability of the assay was confirmed through the screening of the DNA-damaging condition of the on-DNA amide coupling reaction and Pd-catalyzed on-DNA N-arylation reaction.

建立了DNA编码文库(DEL)合成的DNA选择性荧光染料DNA损伤检测方法。针对不同的DEL合成条件,通过与高效液相色谱(HPLC)分析交叉验证,证实了使用特定比例的有机溶剂可严重诱导DNA损伤的事实。同时,通过筛选dna上酰胺偶联反应和pd催化的dna上n-芳基化反应的dna损伤条件,验证了该方法的适用性。
{"title":"Fluorescence-Based Simple and Practical Assay Method for DNA Damage Analysis in DNA-Encoded Library Synthesis.","authors":"Seungyoon Kang, Gyung A Kim, Myo Naing Win, Yeongcheol Ki, Hohjai Lee, Min Su Han","doi":"10.1021/acs.bioconjchem.4c00483","DOIUrl":"10.1021/acs.bioconjchem.4c00483","url":null,"abstract":"<p><p>The dsDNA-selective fluorescent-dye-based DNA damage assay was developed for DNA-encoded library (DEL) synthesis. For the various DEL synthesis conditions, the assay was validated through cross-checking with high-performance liquid chromatography (HPLC) analysis, and the fact was confirmed that the usage of a specific ratio of organic solvent can critically induce DNA damage. Also, the applicability of the assay was confirmed through the screening of the DNA-damaging condition of the on-DNA amide coupling reaction and Pd-catalyzed on-DNA <i>N</i>-arylation reaction.</p>","PeriodicalId":29,"journal":{"name":"Bioconjugate Chemistry","volume":" ","pages":"395-400"},"PeriodicalIF":4.0,"publicationDate":"2025-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142908733","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Functionalization of Biomimetic Polydopamine Shells Constructed onto Bismuth-Core Particles for pH-Mediated Drug Targeting to Heal Bacterial Infections.
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 Epub Date: 2025-02-12 DOI: 10.1021/acs.bioconjchem.5c00003
Md Abdur Rahman, Pinky Akter, Md Rowshanul Habib, Md Ataur Rahman, Md Mahiuddin, Md Mahbubor Rahman, Md Shahidul Islam, M A Jalil Miah, Hasan Ahmad

Nonhealing chronic bacterial infections are very challenging to both patients and the healthcare-providing system. Multimodal therapy enhances the antibiotic efficacy to treat infections via combating multidrug resistance through cumulative therapeutic effects. Functionalized polydopamine (PDA)-coated Bi particles having a core-shell structure may treat such chronic infections. We fabricated a new advanced material based on Tris-functionalized PDA and Bi using a facile three-step protocol for healing drug-resistant bacterial infections. The fabrication of Bi particles, PDA coating on Bi particles, and their Tris functionalization were confirmed by X-ray diffraction, and spectroscopic and thermogravimetric analyses. Tris-functionalized PDA-coated Bi particles, abbreviated as Bi/PDA-Tris, exhibited a higher average diameter, improved hydrophilicity, aqueous dispersity, and colloidal stability. Bi/PDA-Tris showed a delicate surface morphology, narrow size distribution, spherical shape, and core-shell structure. In vitro bovine serum albumin and hemolysis assays showed minimal protein adsorption and the desirable hemocompatibility of Bi/PDA-Tris. Antibacterial gentamicin (GM)-immobilized Bi/PDA-Tris showed pH-mediated sustained drug release kinetics under acidic conditions. The in vitro study of GM-loaded Bi/PDA-Tris particles exhibited significant bacterial growth inhibition and bactericidal activity. Tris functionalization effectively enhances the antibacterial efficacy of the PDA shell under acidic conditions to target and heal bacterial infections. This approach has introduced economic, nontoxic, easy-to-use, relatively more biocompatible Bi particles as a substituent for precise metals like Pt, Au, and Ag for the development of core-shell composite materials.

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引用次数: 0
Site-Specific Protein Modification via Reductive Amination of Genetically Encoded Aldehyde.
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 Epub Date: 2025-02-18 DOI: 10.1021/acs.bioconjchem.4c00538
Lei Zhao, Zhifen Huang, Haonan Meng, Qianzhi Liang, Xun-Cheng Su, Weimin Xuan

Aldehyde represents an extremely useful bio-orthogonal group in chemical biology and has promoted the generation of high-quality bioconjugates in therapeutics development. However, the installation of an aldehyde group on a protein and subsequent conjugation remains technically inadequate in the aspect of site choice, substrate availability, and linkage stability. Herein, we take efforts to advance the genetic incorporation of an aldehyde-containing noncanonical amino acid in E. coli and then show that reductive amination could be a useful reaction in introducing various amine-containing molecules, including peptides, into a specific site of proteins.

{"title":"Site-Specific Protein Modification via Reductive Amination of Genetically Encoded Aldehyde.","authors":"Lei Zhao, Zhifen Huang, Haonan Meng, Qianzhi Liang, Xun-Cheng Su, Weimin Xuan","doi":"10.1021/acs.bioconjchem.4c00538","DOIUrl":"10.1021/acs.bioconjchem.4c00538","url":null,"abstract":"<p><p>Aldehyde represents an extremely useful bio-orthogonal group in chemical biology and has promoted the generation of high-quality bioconjugates in therapeutics development. However, the installation of an aldehyde group on a protein and subsequent conjugation remains technically inadequate in the aspect of site choice, substrate availability, and linkage stability. Herein, we take efforts to advance the genetic incorporation of an aldehyde-containing noncanonical amino acid in <i>E. coli</i> and then show that reductive amination could be a useful reaction in introducing various amine-containing molecules, including peptides, into a specific site of proteins.</p>","PeriodicalId":29,"journal":{"name":"Bioconjugate Chemistry","volume":" ","pages":"377-382"},"PeriodicalIF":4.0,"publicationDate":"2025-03-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143439379","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lysosome-Specific Delivery of β-Glucosidase Enzyme Using Protein-Glycopolypeptide Conjugate via Protein Engineering and Bioconjugation.
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 Epub Date: 2025-02-23 DOI: 10.1021/acs.bioconjchem.4c00430
Abinash Padhy, Mani Gupta, Apurba Das, Isha Farook, Tahiti Dutta, Supratim Datta, Rupak Datta, Sayam Sen Gupta

Lysosomal enzyme replacement therapy (ERT) holds potential for treating lysosomal storage disorders, but achieving targeted delivery of deficient therapeutic enzymes remains a significant challenge. This study presents a novel approach for the lysosome-specific delivery of the β-glucosidase (B8CYA8) enzyme by covalently conjugating lysosome-targeting mannose-6-phosphate functionalized glycopolypeptides (M6P-GP). We used a protein-glycopolypeptide conjugate developed through advanced protein engineering and bioconjugation techniques. By conjugating β-glucosidase to M6P-GP that has a high affinity for the cation-independent mannose-6-phosphate receptors (CI-MPR) and lysosomal receptors, we enhance the enzyme's selective intracellular uptake and lysosome-specific localization. To attain maximum activity of the near-native enzyme after delivery, we have designed and synthesized an acetal linkage containing the pH-responsive linker maleimide-acetal-azide (MAA), which will cleave in the lysosomal acidic pH to detach the glycopolypeptide from the protein backbone. We demonstrated the efficient cellular uptake of the protein-glycopolypeptide conjugate and showed targeted lysosome delivery, leading to increased enzymatic activity compared to untreated cells. Our results proved that the approach mainly improves the specificity and efficiency of enzyme delivery, particularly into lysosomes, which may enable new methods for ERT. These findings suggest that protein-glycopolypeptide conjugates could represent a class of bioconjugates to design targeted enzyme therapies, offering a pathway to the effective treatment of Gaucher disease (GD) and potentially other related lysosomal storage disorders.

溶酶体酶替代疗法(ERT)具有治疗溶酶体贮积症的潜力,但如何有针对性地输送缺乏的治疗酶仍是一项重大挑战。本研究提出了一种新方法,通过共价连接溶酶体靶向的 6-磷酸甘露糖官能化糖多肽(M6P-GP),实现β-葡萄糖苷酶(B8CYA8)酶的溶酶体特异性递送。我们使用了一种通过先进的蛋白质工程和生物共轭技术开发的蛋白质-糖多肽共轭物。通过将β-葡萄糖苷酶与与阳离子无关的 6-磷酸甘露糖受体(CI-MPR)和溶酶体受体具有高亲和力的 M6P-GP 共轭,我们增强了酶在细胞内的选择性吸收和溶酶体特异性定位。为使近原生酶在输送后达到最大活性,我们设计并合成了一种乙缩醛连接,其中含有 pH 响应连接体马来酰亚胺-乙缩醛-氮化物(MAA),它将在溶酶体酸性 pH 下裂解,使糖多肽与蛋白质骨架分离。我们证明了细胞对蛋白质-糖多肽共轭物的高效吸收,并显示了靶向溶酶体递送,与未经处理的细胞相比,酶活性有所提高。我们的研究结果证明,这种方法主要提高了酶递送的特异性和效率,尤其是进入溶酶体的效率,这可能成为 ERT 的新方法。这些研究结果表明,蛋白质-甘氨多肽共轭物可以作为一类生物共轭物来设计靶向酶疗法,为有效治疗戈谢病(GD)和其他潜在的相关溶酶体贮积症提供了一条途径。
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引用次数: 0
Heterovalent Click Reactions on DNA Origami.
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-03-19 Epub Date: 2025-03-05 DOI: 10.1021/acs.bioconjchem.4c00552
Grant A Knappe, Jeffrey Gorman, Andrew N Bigley, Steven P Harvey, Mark Bathe

Nucleic acid nanoparticles (NANPs) fabricated by using the DNA origami method have broad utility in materials science and bioengineering. Their site-specific, heterovalent functionalization with secondary molecules such as proteins or fluorophores is a unique feature of this technology that drives its utility. Currently, however, there are few chemistries that enable fast, efficient covalent functionalization of NANPs with a broad conjugate scope and heterovalency. To address this need, we introduce synthetic methods to access inverse electron-demand Diels-Alder chemistry on NANPs. We demonstrate a broad conjugate scope, characterize application-relevant kinetics, and integrate this new chemistry with strain-promoted azide-alkyne cycloaddition chemistry to enable heterovalent click reactions on NANPs. We applied these chemistries to formulate a prototypical chemical countermeasure against chemical nerve agents. We envision this additional chemistry finding broad utility in the synthetic toolkit accessible to the nucleic acid nanotechnology community.

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引用次数: 0
期刊
Bioconjugate Chemistry
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