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Progress in Multiscale Modeling of Silk Materials. 丝绸材料多尺度建模的进展。
IF 8.3 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 Epub Date: 2024-10-22 DOI: 10.1021/acs.biomac.4c01122
Harry D A Brough, David Cheneler, John G Hardy

As a result of their hierarchical structure and biological processing, silk fibers rank among nature's most remarkable materials. The biocompatibility of silk-based materials and the exceptional mechanical properties of certain fibers has inspired the use of silk in numerous technical and medical applications. In recent years, computational modeling has clarified the relationship between the molecular architecture and emergent properties of silk fibers and has demonstrated predictive power in studies on novel biomaterials. Here, we review advances in modeling the structure and properties of natural and synthetic silk-based materials, from early structural studies of silkworm cocoon fibers to cutting-edge atomistic simulations of spider silk nanofibrils and the recent use of machine learning models. We explore applications of modeling across length scales: from quantum mechanical studies on model peptides, to atomistic and coarse-grained molecular dynamics simulations of silk proteins, to finite element analysis of spider webs. As computational power and algorithmic efficiency continue to advance, we expect multiscale modeling to become an indispensable tool for understanding nature's most impressive fibers and developing bioinspired functional materials.

由于具有分层结构和生物加工特性,蚕丝纤维是自然界最杰出的材料之一。丝基材料的生物相容性和某些纤维的特殊机械性能激发了丝在众多技术和医疗应用中的使用。近年来,计算建模阐明了蚕丝纤维的分子结构与新兴特性之间的关系,并在新型生物材料的研究中展示了预测能力。在此,我们回顾了天然和合成丝基材料的结构和性能建模方面的进展,从早期的蚕茧纤维结构研究到蜘蛛丝纳米纤维的尖端原子模拟,以及最近对机器学习模型的使用。我们探讨了跨长度尺度建模的应用:从模型肽的量子力学研究,到丝蛋白的原子和粗粒度分子动力学模拟,再到蜘蛛网的有限元分析。随着计算能力和算法效率的不断提高,我们预计多尺度建模将成为了解自然界最令人印象深刻的纤维和开发生物启发功能材料不可或缺的工具。
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引用次数: 0
Fibrillar Hydrogel Inducing Cell Mechanotransduction for Tissue Engineering. 用于组织工程的纤维水凝胶诱导细胞机械传导。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 DOI: 10.1021/acs.biomac.4c00897
Viktoriia V Egorova, Mariia P Lavrenteva, Liubov N Makhaeva, Ekaterina A Petrova, Alina A Ushakova, Mikhail S Bozhokin, Elena F Krivoshapkina

One of the key strategies for tissue engineering is to design multifunctional bioinks that balance printability with cytocompatibility. Here, we describe fibrillar hydrogels produced by Schiff base formation between B-type gelatin and oxidized sodium alginate, followed by the incorporation of type I collagen, yielding a new gel (MyoColl). The resulting hydrogel exhibits a temperature- and mass-ratio-dependent sol-gel transition, showing variability of hydrogel properties depending on the component ratio. MyoColl composition provides a convenient platform for biofabrication in terms of shear thinning, yielding, Young's modulus, and shape accuracy. Metabolic activity tests and fluorescent microscopy of 2D hydrogel-based mouse C2C12 myoblast cell culture show significant cytocompatibility of the developed carriers. In addition, primary signs of cell mechanotransduction and myofilament formation of 3D printed MyoColl-based cell cultures were detected and described. Due to these promising results, the described hydrogel composition has shown itself as a convenient platform for muscle tissue engineering.

组织工程的关键策略之一是设计兼顾可印刷性和细胞相容性的多功能生物墨水。在这里,我们描述了通过 B 型明胶和氧化海藻酸钠之间的席夫碱形成产生的纤维状水凝胶,然后加入 I 型胶原蛋白,产生一种新的凝胶(MyoColl)。由此产生的水凝胶呈现出温度和质量比依赖性溶胶-凝胶转变,水凝胶特性随成分比例的变化而变化。MyoColl 成分在剪切稀化、屈服、杨氏模量和形状精度方面为生物制造提供了一个方便的平台。基于二维水凝胶的小鼠 C2C12 肌母细胞培养的代谢活性测试和荧光显微镜检查表明,所开发的载体具有显著的细胞相容性。此外,还检测并描述了基于三维打印 MyoColl 的细胞培养物的细胞机械传导和肌丝形成的主要迹象。由于这些令人鼓舞的结果,所描述的水凝胶组合物已证明自己是肌肉组织工程的便捷平台。
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引用次数: 0
Efficient Polymeric Nanoparticle Gene Delivery Enabled Via Tri- and Tetrafunctional Branching. 通过三官能和四官能分支实现高效聚合物纳米粒子基因递送。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 Epub Date: 2024-10-28 DOI: 10.1021/acs.biomac.4c00954
Erick E Rocher, Kathryn M Luly, Stephany Y Tzeng, Joel C Sunshine, Jordan J Green

Poly(β-amino ester) (PBAE) nanoparticles (NPs) show great promise for nonviral gene delivery. Recent studies suggest branched PBAEs (BPBAEs) offer advantages over linear counterparts, but the effect of polymer structure has not been well investigated across many chemical constituents. Here, a library of BPBAEs was synthesized with tri- and tetrafunctional branching. These polymers self-assemble with DNA to form highly cationic, monodisperse NPs with notably small size (∼50 nm). Optimal transfection occurred with polymer structures that featured moderate PBAE branching, enabling complete DNA encapsulation, rapid NP uptake, and robust expression at low DNA doses and polymer amounts. Optimized NPs enabled efficient DNA delivery to diverse cell types in vitro while maintaining high cellular viability, demonstrating significant improvements over a well-performing linear PBAE counterpart. BPBAEs also facilitated efficient mRNA and siRNA delivery, highlighting the versatility of these structures and demonstrating the broad utility of BPBAE NPs as vectors for nucleic acid delivery.

聚(β-氨基酯)(PBAE)纳米粒子(NPs)在非病毒基因递送方面前景广阔。最近的研究表明,支化聚(β-氨基酯)比线性聚(β-氨基酯)更具优势,但对聚合物结构对多种化学成分的影响尚未进行深入研究。在这里,我们合成了一个具有三官能团和四官能团分支的 BPBAEs 库。这些聚合物能与 DNA 自组装,形成高度阳离子、单分散的 NPs,且尺寸极小(50 nm)。具有适度 PBAE 分支的聚合物结构可实现最佳转染效果,从而在 DNA 剂量和聚合物用量较低的情况下实现 DNA 的完全包裹、NP 的快速吸收和强健表达。优化后的 NP 能在体外将 DNA 有效地输送到不同类型的细胞,同时保持较高的细胞活力,与性能良好的线性 PBAE 相比有了显著改善。BPBAEs 还有助于高效递送 mRNA 和 siRNA,突出了这些结构的多功能性,证明了 BPBAE NPs 作为核酸递送载体的广泛用途。
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引用次数: 0
Interaction of Arginine-Rich Surfactant-like Peptide Nanotubes with Liposomes. 富精氨酸表面活性剂类肽纳米管与脂质体的相互作用
IF 8.3 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 Epub Date: 2024-10-29 DOI: 10.1021/acs.biomac.4c01072
Valeria Castelletto, Jani Seitsonen, Lucas R de Mello, Ian W Hamley

The interaction of the surfactant-like peptide (SLP) R3L12 bearing three cationic arginine residues with model liposomes is investigated in aqueous solution at various pH values, under conditions for which the SLP self-assembles into nanotubes. The structure of liposomes of model anionic lipid DPPG [1,2-dipalmitoyl-sn-glycero-3-phospho-rac-(1-glycerol)], or zwitterionic lipid DPPE [1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine] is probed using small-angle X-ray scattering and cryogenic-transmission electron microscopy. The unilamellar vesicles of DPPG are significantly restructured in the presence of R3L12, especially at low pH, and multilamellar vesicles of DPPE are also restructured under these conditions. The SLP promotes the release of cargo encapsulated in the vesicles as probed by calcein fluorescence, with notably higher release for anionic DPPG vesicles. Laurdan fluorescence experiments to probe membrane fluidity (lipid chain ordering) show that R3L12 destabilizes the lipid gel phase, especially for anionic DPPG. This model nanotube-forming SLP has promise as a pH-sensitive release system for vesicle-encapsulated cargo.

研究了在不同 pH 值的水溶液中,带有三个阳离子精氨酸残基的表面活性剂样肽(SLP)R3L12 与模型脂质体之间的相互作用。使用小角 X 射线散射和低温透射电子显微镜探测了阴离子脂质 DPPG [1,2-二棕榈酰-sn-甘油-3-磷-rac-(1-甘油)] 或齐聚糖脂质 DPPE [1,2-二棕榈酰-sn-甘油-3-磷乙醇胺] 模型脂质体的结构。在 R3L12 的存在下,DPPG 的单纤毛膜囊泡发生了明显的重组,尤其是在低 pH 值条件下,DPPE 的多纤毛膜囊泡也在这些条件下发生了重组。通过钙蓝蛋白荧光探测,SLP 可促进囊泡中包裹的货物释放,阴离子 DPPG 囊泡的释放量明显更高。探测膜流动性(脂链有序性)的劳尔登荧光实验表明,R3L12 会破坏脂质凝胶相的稳定性,尤其是阴离子 DPPG。这种纳米管形成的 SLP 模型有望成为囊泡包裹货物的 pH 值敏感释放系统。
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引用次数: 0
Nacre-Inspired Nanocomposites from Natural Polypeptide ε-Poly-l-Lysine and Natural Clay Montmorillonite: Remarkable Reinforcing Effect at Low Polymer Content and Its Mechanism. 天然多肽 ε-Poly-l-Lysine 与天然粘土蒙脱石的纳米复合材料:低聚合物含量下的显著增强效果及其机理。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 Epub Date: 2024-10-28 DOI: 10.1021/acs.biomac.4c00451
Kazunori Ushimaru, Azusa Togo, Naoto Kamiuchi, Ryota Watanabe, Keita Sakakibara, Yasuko Saito, Akio Kumagai, Shun Sato, Tokuma Fukuoka

Nanocomposites composed of the cationic polypeptide ε-poly-l-lysine (ε-PL) and natural sodium montmorillonite (MMT) were prepared and evaluated. These MMT/ε-PL composites formed highly ordered nanostructures resembling natural nacreous layers by a simple process. Scanning electron microscopy (SEM) and X-ray diffraction (XRD) analyses confirmed that a small amount of ε-PL remarkably enhanced the MMT orientation in the composites. This MMT orientation-enhancing effect of ε-PL was more pronounced than that of poly(vinyl alcohol) (PVA), which is one of the most popular ingredients of MMT-based composites. The orientation enhancement provided by ε-PL was primarily driven by ionic interactions and responsible for high mechanical properties at low polymer content. This remarkable reinforcing effect of ε-PL on MMT at a low polymer content will help to develop high-performance and sustainable nacreous composites. In addition, it improves our understanding of the reinforcing mechanism of natural nacre, which exhibits excellent mechanical properties even with relatively small amounts of organic component.

制备并评估了由阳离子多肽ε-聚赖氨酸(ε-PL)和天然蒙脱石钠(MMT)组成的纳米复合材料。通过简单的工艺,这些 MMT/ε-PL 复合材料形成了高度有序的纳米结构,类似于天然珍珠层。扫描电子显微镜(SEM)和 X 射线衍射(XRD)分析证实,少量的 ε-PL 显著增强了复合材料中 MMT 的取向。与聚乙烯醇(PVA)相比,ε-PL 对 MMT 取向的增强作用更为明显,而聚乙烯醇是 MMT 基复合材料中最常用的成分之一。ε-PL的取向增强作用主要是由离子相互作用驱动的,因此在聚合物含量较低的情况下也具有较高的力学性能。在聚合物含量较低的情况下,ε-PL 对 MMT 的明显增强作用将有助于开发高性能和可持续的珍珠质复合材料。此外,它还增进了我们对天然珍珠质的增强机理的了解,即使有机成分含量相对较少,天然珍珠质也能表现出优异的力学性能。
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引用次数: 0
Polysaccharide-Based Injectable Hydrogel Loaded with Quercetin Promotes Scarless Healing of Burn Wounds by Reducing Inflammation. 含有槲皮素的多糖注射水凝胶通过减轻炎症促进烧伤伤口的无疤痕愈合
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 Epub Date: 2024-10-28 DOI: 10.1021/acs.biomac.4c01276
Dandan Xing, Yangrui Du, Kang Dai, Shiying Lang, Yangjing Bai, Gongyan Liu

Moisture loss, infection, and severe inflammatory reactions are the primary factors affecting burn wound healing and leading to scar formation. Herein, we developed a quercetin-loaded polysaccharide-based injectable hydrogel (named PECE). The PECE consists of oxidized sodium alginate (OAlg) coupled with chitosan (CS) via Schiff bases and electrostatic interactions, while Que is incorporated via hydrogen bonding. Benefiting from the hydroxyl and carboxyl groups, PECE features distinguished moisturizing ability. Additionally, the sustained release of Que imparts remarkable antibacterial activity against Escherichia coli and Staphylococcus aureus. Likewise, PECE demonstrates favorable in vitro anti-inflammatory capacity as released Que significantly downregulates pro-inflammatory factors (IL-6 and TNF-α) secreted by RAW 264.7 macrophages. More importantly, in a rat model of deep second-degree burn wounds, PECE effectively inhibits wound infection, reduces inflammation, and promotes angiogenesis and collagen deposition, ultimately minimizing scar formation. Overall, this work presents a promising strategy for scarless healing of burn wounds.

水分流失、感染和严重的炎症反应是影响烧伤创面愈合并导致疤痕形成的主要因素。在此,我们开发了一种负载槲皮素的多糖类可注射水凝胶(命名为 PECE)。PECE 由氧化海藻酸钠(OAlg)与壳聚糖(CS)通过希夫碱和静电作用结合而成,而阙则通过氢键结合。得益于羟基和羧基,PECE 具有出色的保湿能力。此外,Que 的持续释放对大肠杆菌和金黄色葡萄球菌具有显著的抗菌活性。同样,PECE 还具有良好的体外抗炎能力,因为释放的阙能显著降低 RAW 264.7 巨噬细胞分泌的促炎因子(IL-6 和 TNF-α)。更重要的是,在大鼠二度深度烧伤模型中,PECE 能有效抑制伤口感染,减轻炎症反应,促进血管生成和胶原蛋白沉积,最终减少疤痕的形成。总之,这项研究为烧伤创面的无疤痕愈合提供了一种前景广阔的策略。
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引用次数: 0
Effect of Fucoidan on Conformation of Xanthan Gum and Its Tribo-Rheological Properties. 褐藻糖胶对黄原胶构象及其三流变特性的影响
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 Epub Date: 2024-10-16 DOI: 10.1021/acs.biomac.4c00973
Juneha Bak, Byoungseung Yoo

This study sought to explore the rheological and tribological properties of fucoidan-xanthan gum (XG) mixtures at different fucoidan concentrations. A conformational transition of XG from disordered to ordered forms was observed with an increasing fucoidan concentration, as determined by intrinsic viscosity measurements and Fourier transform infrared analysis. All mixtures exhibited non-Newtonian flow behavior with the yield stress. The mixture sample with 0.5% fucoidan displayed higher apparent viscosity at 100 s-1, yield stress, and viscoelastic moduli values than XG alone, suggesting viscoelastic synergism between the two biopolymers. However, these values exhibited a decreasing trend with higher fucoidan concentrations (0.5-2.0%), indicating a nullification of synergism. While XG alone exhibited antithixotropic behavior, fucoidan-XG mixtures showed thixotropic behavior, most pronounced at 1.0% fucoidan. A decreasing trend was observed in the maximum friction coefficient as the fucoidan concentration increased, indicating better lubricant properties. Collectively, our findings may enable widespread adoption and application of fucoidan in various industries.

本研究旨在探索不同褐藻糖胶浓度下褐藻糖胶-黄原胶(XG)混合物的流变学和摩擦学特性。通过固有粘度测量和傅立叶变换红外分析,观察到随着褐藻糖胶浓度的增加,XG从无序构象转变为有序构象。所有混合物在屈服应力作用下都表现出非牛顿流体特性。含有 0.5% 褐藻糖胶的混合物样品在 100 s-1 时的表观粘度、屈服应力和粘弹性模量值均高于单独的 XG,这表明两种生物聚合物之间存在粘弹性协同作用。然而,随着褐藻糖胶浓度的增加(0.5-2.0%),这些值呈下降趋势,表明协同作用失效。单独的 XG 具有反触变性,而褐藻糖胶-XG 混合物则具有触变性,在褐藻糖胶浓度为 1.0% 时最为明显。随着褐藻糖胶浓度的增加,最大摩擦系数呈下降趋势,这表明褐藻糖胶具有更好的润滑特性。总之,我们的研究结果可使褐藻糖胶在各行各业得到广泛的采用和应用。
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引用次数: 0
Recent Advances in Degradable Biomedical Polymers for Prevention, Diagnosis and Treatment of Diseases. 用于疾病预防、诊断和治疗的可降解生物医学聚合物的最新进展。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 Epub Date: 2024-10-17 DOI: 10.1021/acs.biomac.4c01193
Siting Zhang, Huapan Fang, Huayu Tian

Biomedical polymers play a key role in preventing, diagnosing, and treating diseases, showcasing a wide range of applications. Their unique advantages, such as rich source, good biocompatibility, and excellent modifiability, make them ideal biomaterials for drug delivery, biomedical imaging, and tissue engineering. However, conventional biomedical polymers suffer from poor degradation in vivo, increasing the risks of bioaccumulation and potential toxicity. To address these issues, degradable biomedical polymers can serve as an alternative strategy in biomedicine. Degradable biomedical polymers can efficiently relieve bioaccumulation in vivo and effectively reduce patient burden in disease management. This review comprehensively introduces the classification and properties of biomedical polymers and the recent research progress of degradable biomedical polymers in various diseases. Through an in-depth analysis of their classification, properties, and applications, we aim to provide strong guidance for promoting basic research and clinical translation of degradable biomedical polymers.

生物医用聚合物在预防、诊断和治疗疾病方面发挥着关键作用,应用范围十分广泛。生物医用聚合物具有来源丰富、生物相容性好、可改性强等独特优势,是药物输送、生物医学成像和组织工程的理想生物材料。然而,传统的生物医学聚合物在体内降解性差,增加了生物蓄积和潜在毒性的风险。为解决这些问题,可降解生物医学聚合物可作为生物医学的替代策略。可降解生物医用聚合物可有效缓解体内生物蓄积性,并在疾病治疗中有效减轻患者负担。本综述全面介绍了生物医用聚合物的分类和特性,以及可降解生物医用聚合物在各种疾病中的最新研究进展。通过对可降解生物医用高分子材料的分类、性能和应用的深入分析,旨在为促进可降解生物医用高分子材料的基础研究和临床转化提供有力的指导。
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引用次数: 0
Peptides as Targeting Agents and Therapeutics: A Brief Overview. 肽作为靶向药物和治疗剂:简介。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 Epub Date: 2024-10-24 DOI: 10.1021/acs.biomac.4c00518
Jalissa L Warthen, Michael J Lueckheide

The controllability and specificity of peptides make them ideal for targeting therapeutic delivery systems and as therapeutic agents that interfere with the essential functions of pathogens and tumors. Peptides can also mimic natural protein structures or parts thereof, agonize receptors, and be conjugated to other molecules that will self-assemble. In this short Review, we discuss research from the last ten years into peptide use in three arenas: the treatment of cancer, the treatment of pathogens, and the targeting of specific organs and organelles. These studies demonstrate the successful application of targeting and therapeutic peptides in vitro and in vivo and show the promising range of applications peptides can have going forward.

肽的可控性和特异性使其成为靶向治疗给药系统和干扰病原体和肿瘤基本功能的治疗剂的理想选择。肽还可以模仿天然蛋白质结构或其中的部分结构,激动受体,并与其他分子结合,从而实现自我组装。在这篇简短的综述中,我们将讨论过去十年中有关肽在三个领域中应用的研究:癌症治疗、病原体治疗以及特定器官和细胞器的靶向治疗。这些研究证明了靶向肽和治疗肽在体外和体内的成功应用,并展示了肽在未来的应用前景。
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引用次数: 0
Photocrosslinkable, Low-Affinity Affibodies Show Improved Transport and Retention in 3D Tumor Spheroids. 可光交联的低亲和力抗体在三维肿瘤球体内显示出更好的运输和保留能力
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 Epub Date: 2024-10-25 DOI: 10.1021/acs.biomac.4c01225
Bryce M Bower, Shane D Curry, Andrew P Goodwin, Jennifer N Cha

The efficacy of affinity-based treatments for cancer and other diseases is often limited by poor distribution throughout the targeted tissue. Although lower-affinity antibodies will penetrate more uniformly, these often reach lower concentrations because of their rapid clearance from the tissue. To increase retention and improve distribution, we created low-affinity photocrosslinkable affibodies that can diffuse into dense tumor matrices with limited tumor barrier formation and then be photocrosslinked in place to cell receptors to increase retention. In testing with 3D tumor spheroids, the addition of a 50 nM photocrosslinkable affibody showed a similar level of accumulation at the edges of the spheroid but a higher level near the middle of the spheroid than the wild-type (non-photocrosslinkable) affibody. These results show that target affinity affects protein transport in tumor microenvironments and that covalently cross-linking the ligands to cells may improve both their transport and retention.

亲和性疗法治疗癌症和其他疾病的疗效往往受到靶组织分布不均的限制。虽然低亲和力抗体能更均匀地渗透,但由于它们能迅速从组织中清除,因此浓度往往较低。为了提高保留率和改善分布,我们创造了低亲和力光交联亲和体,它们可以扩散到致密的肿瘤基质中,肿瘤屏障形成有限,然后与细胞受体光交联以提高保留率。在三维肿瘤球体测试中,加入 50 nM 的光交联亲和体后,球体边缘的聚集水平与野生型(非光交联)亲和体相似,但靠近球体中部的聚集水平更高。这些结果表明,靶亲和力会影响蛋白质在肿瘤微环境中的转运,将配体共价交联到细胞上可能会改善它们的转运和保留。
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引用次数: 0
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