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Coarse-Grain Model of Ultrarigid Polymer Rods Comprising Bifunctionally Linked Peptide Bundlemers. 包含双功能连接肽束的超硬聚合物棒的粗粒模型。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-05 DOI: 10.1021/acs.biomac.4c01192
Tianren Zhang, Dai-Bei Yang, Christopher J Kloxin, Darrin J Pochan, Jeffery G Saven

Computationally designed homotetrameric helical peptide bundles have been functionalized at their N-termini to achieve supramolecular polymers, wherein individual bundles ("bundlemers") are the monomeric units. Adjacent bundles are linked via two covalent cross-links. The polymers exhibit a range of conformational properties, including formation of rigid-rods with micrometer-scale persistence lengths. Herein, a coarse-grained model is used to illuminate how molecular features affect the rod-like behavior of the polymers. With increasing affinity between bundlemer ends, a sharp transition in the persistence length is observed. Doubly linked chains exhibit larger persistence lengths and more robust formation of rigid-rod structures than singly linked chains. Chain stiffness increases with decreasing temperatures. Increasing the length of the cross-linker results in more flexible chains. This model provides insights into how molecular features control the structural properties of chains comprising doubly linked rigid bundlemers.

通过计算设计的同四聚体螺旋肽束在其 N 端被功能化,从而形成超分子聚合物,其中单个肽束("bundlemers")是单体单元。相邻的肽束通过两个共价交联连接在一起。聚合物表现出一系列构象特性,包括形成具有微米级持续长度的刚性杆。本文使用粗粒度模型来阐明分子特征如何影响聚合物的杆状行为。随着束聚合物末端之间亲和力的增加,可以观察到持久长度的急剧变化。与单链相比,双链表现出更大的持续长度和更强的刚性杆状结构形成能力。链的硬度随着温度的降低而增加。增加交联剂的长度会使链更柔韧。该模型有助于深入了解分子特征如何控制由双链刚性束膜组成的链的结构特性。
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引用次数: 0
Genetically Engineered Liposwitch-Based Nanomaterials. 基因工程脂质开关纳米材料。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-04 DOI: 10.1021/acs.biomac.4c01388
Md Shahadat Hossain, Alex Wang, Salma Anika, Zhe Zhang, Davoud Mozhdehi

Fusion of intrinsically disordered and globular proteins is a powerful strategy to create functional nanomaterials. However, the immutable nature of genetic encoding restricts the dynamic adaptability of nanostructures postexpression. To address this, we envisioned using a myristoyl switch, a protein that combines allostery and post-translational modifications─two strategies that modify protein properties without altering their sequence─to regulate intrinsically disordered protein (IDP)-driven nanoassembly. A typical myristoyl switch, allosterically activated by a stimulus, reveals a sequestered lipid for membrane association. We hypothesize that this conditional exposure of lipids can regulate the assembly of fusion proteins, a concept we term "liposwitching". We tested this by fusing recoverin, a calcium-dependent myristoyl switch, with elastin-like polypeptide, a thermoresponsive model IDP. Biophysical analyses confirmed recoverin's myristoyl-switch functionality, while dynamic light scattering and cryo-transmission electron microscopy showed distinct calcium- and lipidation-dependent phase separation and assembly. This study highlights liposwitching as a viable strategy for controlling DP-driven nanoassembly, enabling applications in synthetic biology and cellular engineering.

融合本质上无序的球状蛋白质是创造功能性纳米材料的有力策略。然而,基因编码的不可改变性限制了纳米结构在表达后的动态适应性。为了解决这个问题,我们设想使用肉豆蔻酰开关--一种结合了异构和翻译后修饰的蛋白质--两种在不改变蛋白质序列的情况下改变蛋白质特性的策略--来调节本质无序蛋白(IDP)驱动的纳米组装。典型的肉豆蔻酰开关通过刺激激活异构体,从而揭示出一种用于膜结合的螯合脂质。我们假设,这种有条件的脂质暴露可以调节融合蛋白的组装,我们将这一概念称为 "脂质开关"。我们通过将钙依赖性肉豆蔻酰开关恢复蛋白与弹性蛋白样多肽(一种热致伸缩性模型 IDP)进行融合,对这一概念进行了测试。生物物理分析证实了复原素的肉豆蔻酰开关功能,而动态光散射和冷冻透射电子显微镜则显示了明显的钙依赖性和脂化依赖性相分离和组装。这项研究强调了脂质开关是控制 DP 驱动的纳米组装的一种可行策略,可应用于合成生物学和细胞工程。
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引用次数: 0
Pectin-Based Bioplastics Functionalized with Polyphenols from Rose Oil Distillation Wastewater Exhibit Antioxidant Activity. 用玫瑰油蒸馏废水中的多酚功能化的果胶基生物塑料具有抗氧化活性。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-04 DOI: 10.1021/acs.biomac.4c00944
Marika Avitabile, Ana Aleksov, C Valeria L Giosafatto, Odile Francesca Restaino, Marija Lesjak, Nemanja Živanović, Loredana Mariniello, Nataša Simin

This study explored the potential of rose aqueous extract (RE), a byproduct of rose essential oil extraction, to enhance the properties of biobased food packaging materials. RE contained a high phenolic content (153 mg of GAE/g of dw), rich in hydroxybenzoic acids and flavonols. The antioxidant potential of RE, assessed by DPPH assay, was evaluated (IC50 = 2.85 μg/mL). Edible pectin films fortified with RE were prepared, and their mechanical, physical, and chemical characteristics were evaluated. RE addition increased the moisture content from 14 to 28%, while moisture uptake remained stable at around 10%. Zeta potential remained below -30 mV, indicating that particle aggregation and particle size decreased with higher RE concentrations. Scanning electron microscopy showed an improved homogeneity of the films. RE retained its antioxidant properties, enhancing the mechanical resistance of the films and offering protection against oxidative damage and UV radiation. These findings suggest the potential of RE in developing functional, eco-friendly food packaging.

本研究探讨了玫瑰水提取物(RE)(玫瑰精油提取的副产品)在提高生物基食品包装材料性能方面的潜力。RE 含有较高的酚类物质含量(153 毫克 GAE/克干重),其中富含羟基苯甲酸和黄酮醇。用 DPPH 法评估了 RE 的抗氧化潜力(IC50 = 2.85 μg/mL)。制备了添加 RE 的食用果胶薄膜,并对其机械、物理和化学特性进行了评估。添加 RE 后,水分含量从 14% 增加到 28%,而吸湿率则稳定在 10% 左右。Zeta 电位保持在 -30 mV 以下,表明随着 RE 浓度的升高,颗粒聚集和粒径减小。扫描电子显微镜显示薄膜的均匀性有所提高。RE 保持了其抗氧化特性,增强了薄膜的机械耐受性,并提供了抗氧化损伤和紫外线辐射的保护。这些研究结果表明了 RE 在开发功能性环保食品包装方面的潜力。
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引用次数: 0
Powdered Medical Adhesive with Long Lasting Adhesion in Water Environment. 在水环境中具有持久粘性的粉末状医用粘合剂。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-02 DOI: 10.1021/acs.biomac.4c01149
Yi Ju, Junjie Wang, Yang Lei, Yunbing Wang

Medical adhesives have been used under surgical conditions. However, it is always a big challenge to maintain long-term adhesion in a water environment. Besides, it usually takes a long time to complete the adhesion, and the operation might be complicated. In this study, tannic acid and gelatin solution under acidic conditions were mixed, flocculated, lyophilized, and crushed; thus, a powdered medical adhesive (POWDER) was prepared with long-lasting adhesion in a water environment, convenience, and low price. Tannic acid bound gelatin and maintained adhesive force primarily through hydrogen bonding and reacted with amino sulfhydryl and other amino acid residues after oxidation into aldehyde, exhibiting excellent underwater adhesion. Oxidized dextran (ODex) powder rich in an aldehyde group was introduced to provide covalent binding in the adhesive. In vitro and in vivo studies showed that POWDER could quickly adhere to various tissues in the water environment. In vitro skin adhesion experiments demonstrated that it could achieve effective adhesion in a water environment for up to 60 days. Its blood compatibility, low cytotoxicity, and biodegradability were also verified. The POWDER developed in this study is of great significance for patients who need rapid wound treatments.

医用粘合剂一直用于外科手术条件下。然而,在水环境中保持长期粘合始终是一个巨大的挑战。此外,完成粘合通常需要较长的时间,操作也可能比较复杂。本研究将单宁酸和明胶溶液在酸性条件下混合、絮凝、冻干和粉碎,从而制备出一种在水环境中具有持久粘合力、方便且价格低廉的粉末状医用粘合剂(POWDER)。单宁酸主要通过氢键结合明胶并保持粘合力,氧化后与氨基巯基和其他氨基酸残基反应成醛,表现出优异的水下粘合力。氧化葡聚糖(ODex)粉末富含醛基,可在粘合剂中提供共价结合。体外和体内研究表明,POWDER 能在水环境中快速粘附各种组织。体外皮肤粘附实验表明,它可以在水环境中实现长达 60 天的有效粘附。它的血液相容性、低细胞毒性和生物可降解性也得到了验证。这项研究中开发的 POWDER 对需要快速治疗伤口的患者具有重要意义。
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引用次数: 0
Ion-Mediated Cross-Linking of Hyaluronic Acid into Hydrogels without Chemical Modification. 离子介导透明质酸交联成水凝胶而无需化学修饰
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1021/acs.biomac.4c00985
Gayatri Prakash, Aaron J Clasky, Kunal Gadani, Mohammad Nazeri, Frank X Gu

Hyaluronic acid (HA) is a biomedically relevant polymer widely explored as a component of hydrogels. The prevailing approaches for cross-linking HA into hydrogels require chemically modifying the polymer, which can increase processing steps and complicate biocompatibility. Herein, we demonstrate an alternative approach to cross-link HA that eliminates the need for chemical modifications by leveraging the interactions between metal cations and the negatively charged, ionizable functional groups on HA. We demonstrate that HA can be cross-linked with the bivalent metal cations Mn(II), Fe(II), Co(II), Ni(II), Cu(II), Zn(II), Pd(II), and notably Mg(II). Using Mg(II) as a model, we show that ion-HA hydrogel rheological properties can be tuned by altering the HA molecular weight and concentrations of ions, NaOH, and HA. Mg(II)-HA hydrogels showed the potential for self-healing and stimulus response. Our findings lay the groundwork for developing a new class of HA-based hydrogels for use in biomedical applications and beyond.

透明质酸(HA)是一种生物医学相关聚合物,被广泛用作水凝胶的成分。将透明质酸交联成水凝胶的主流方法需要对聚合物进行化学修饰,这可能会增加加工步骤并使生物相容性复杂化。在此,我们展示了一种交联 HA 的替代方法,它利用金属阳离子与 HA 上带负电荷的可电离官能团之间的相互作用,无需进行化学修饰。我们证明了 HA 可以与二价金属阳离子 Mn(II)、Fe(II)、Co(II)、Ni(II)、Cu(II)、Zn(II)、Pd(II),尤其是 Mg(II)交联。以 Mg(II) 为模型,我们发现离子-HA 水凝胶的流变特性可以通过改变 HA 分子重量以及离子、NaOH 和 HA 的浓度来调节。镁(II)-HA 水凝胶具有自我修复和刺激响应的潜力。我们的研究结果为开发一类新的基于 HA 的水凝胶奠定了基础,这种水凝胶可用于生物医学应用及其他领域。
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引用次数: 0
Front-Tracking and Gelation in Sessile Droplet Suspensions: What Can They Tell Us about Human Blood? 无柄液滴悬浮液中的前沿跟踪和凝胶化:它们能告诉我们关于人体血液的什么信息?
IF 6.2 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-01 DOI: 10.1021/acs.biomac.4c00753
Sheila Bhatt, Peter A. Smethurst, Gil Garnier, Alexander F. Routh
Recently developed imaging techniques have been used to examine the redistribution of human red blood cells and comparator particles dispersed in carrier fluids within evaporating droplets. We demonstrate that progressive gelation initiates along an annular front, isolating a central pool that briefly remains open to particulate advection before gelation completes across the droplet center. Transition to an elastic solid is evidenced by cracking initiating proximal to front locations. The arrested flow of cellular components, termed a “halted front”, has been investigated using a time-lapse analysis “signature”. The presence of a deformable biocellular component is seen to be essential for front-halting. We show a dependence of front-halt radius on cell volume-fraction, potentially offering a low-cost means of measuring hematocrit. A simple model yields an estimate of the gel zero-shear yield-stress. This approach to understanding the drying dynamics of blood droplets may lead to a new generation of point-of-care diagnostics.
最近开发的成像技术被用于研究蒸发液滴中分散在载液中的人类红细胞和比较粒子的重新分布情况。我们证明,渐进式凝胶化是沿着环形前沿开始的,在凝胶化在液滴中心完成之前,会隔离出一个短暂开放的颗粒吸入中心池。向弹性固体的过渡表现为前沿位置附近开始出现裂纹。利用延时分析 "特征 "研究了被称为 "停止前沿 "的细胞成分停止流动的情况。我们发现,可变形生物细胞成分的存在对前沿停滞至关重要。我们展示了前停半径对细胞体积分数的依赖性,这有可能提供一种低成本的血细胞比容测量方法。一个简单的模型就能估算出凝胶零剪切屈服应力。这种了解血滴干燥动力学的方法可能会带来新一代的护理点诊断方法。
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引用次数: 0
Synthesis and Optimization of Ethylenediamine-Based Zwitterion on Polymer Side Chain for Recognizing Narrow Tumorous pH Windows. 合成并优化聚合物侧链上的乙二胺基齐聚物,用于识别狭窄的肿瘤 pH 窗口。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-31 DOI: 10.1021/acs.biomac.4c01086
Masahiro Toyoda, Yutaka Miura, Motoaki Kobayashi, Masato Tsuda, Takahiro Nomoto, Yuto Honda, Hiroyuki Nakamura, Hiroyasu Takemoto, Nobuhiro Nishiyama

Polyzwitterions that show the alternation of net charge in response to external stimuli have attracted great attention as a new class of surface-polymers on nanomedicines. However, the correlation between their detailed molecular structures and expression of antifouling properties under physiological condition remain controversial. Herein, we synthesized a series of ethylenediamine-based polyzwitterions with carboxy groups/sulfonic groups and ethylene, propylene, and butylene spacers as potential surface-polymers for nanomedicines, allowing sensitive recognition of tumor acidic environments (pH = 6.5-5.5). Then, we evaluated their structure-based characteristics, including pH-dependent cellular uptakes and intracellular distributions. Additionally, the role of conformation stability, i.e., Gibbs free energy changes, was to induce an intramolecular electrostatic interaction in the zwitterionic moieties. These results highlight the practicality of fine-tuning the design of zwitterionic moieties on polymers for the future development of nanomedicines that can recognize the narrow pH window in tumor acidic environments.

作为一种新型的纳米药物表面聚合物,在外部刺激下显示出净电荷交替的聚齐瓦特体引起了人们的极大关注。然而,它们的详细分子结构与生理条件下的防污特性之间的相关性仍存在争议。在此,我们合成了一系列以乙二胺为基础、带有羧基/磺酸基以及乙烯、丙烯和丁烯间隔物的聚齐聚醚,作为潜在的纳米药物表面聚合物,可灵敏识别肿瘤酸性环境(pH = 6.5-5.5)。然后,我们评估了它们基于结构的特性,包括与 pH 值相关的细胞吸收和细胞内分布。此外,构象稳定性(即吉布斯自由能变化)的作用是诱导齐聚物分子内的静电相互作用。这些结果凸显了微调聚合物上的齐聚物设计的实用性,有助于未来开发能识别肿瘤酸性环境中狭窄 pH 窗口的纳米药物。
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引用次数: 0
Site-Selective Zwitterionic Poly(caprolactone-carboxybetaine)-Growth Hormone Receptor Antagonist Conjugate: Synthesis and Biological Evaluation. 位点选择性聚(己内酰胺-羧基甜菜碱)-生长激素受体拮抗剂共轭物:合成与生物学评价。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-29 DOI: 10.1021/acs.biomac.4c00828
Jane Yang, Madeline B Gelb, Kyle Tamshen, Neil L Forsythe, Jeong Hoon Ko, Ellie G Puente, Emma Pelegri-O'Day, Stephen M F Jamieson, Jo K Perry, Heather D Maynard

Zwitterionic polymers have been found to be biocompatible alternatives to poly(ethylene glycol) (PEG) for conjugation to proteins. This work reports the site-selective conjugation of poly(caprolactone-carboxybetaine) (pCLZ) to human growth hormone receptor antagonist (GHA) B2036-alkyne and investigation of safety, activity, and pharmacokinetics. Azide-end-functionalized pCLZs were synthesized and conjugated to GHA B2036-alkyne via copper-catalyzed click reaction. The resulting inhibitory bioactivity concentration responses in Ba/F3-GHR cells were compared to those of PEGylated GHA B2036. IgG and IgM antibody production was tested in mice, and no measurable antibody or cytokine production was detected for the pCLZ conjugate. Using 18F-labeled PET/CT imaging, the pCLZ conjugate showed an increase in circulation time compared to that of GHA B2036. Acute toxicity of the polymer was investigated in vivo and found to be nontoxic. Ex vivo degradation of the polymer on the conjugate was investigated. The results suggest that pCLZ-GHA is a potentially safe alternative to PEG-GHA.

人们发现,在与蛋白质共轭方面,聚(乙二醇)(PEG) 之外,还有一种具有生物相容性的聚合体。本研究报告了聚(己内酯-羧基甜菜碱)(pCLZ)与人类生长激素受体拮抗剂(GHA)B2036-炔的位点选择性共轭,以及对其安全性、活性和药代动力学的研究。通过铜催化的点击反应合成了叠氮端功能化的 pCLZ,并与 GHA B2036-alkyne 共轭。在 Ba/F3-GHR 细胞中产生的抑制生物活性浓度反应与 PEG 化 GHA B2036 的抑制生物活性浓度反应进行了比较。在小鼠体内检测了 IgG 和 IgM 抗体的产生,没有检测到 pCLZ 结合物产生可测量的抗体或细胞因子。利用 18F 标记的 PET/CT 成像,pCLZ 结合物的循环时间比 GHA B2036 延长。该聚合物的急性毒性在体内进行了研究,结果表明是无毒的。还研究了共轭聚合物的体内外降解情况。结果表明,pCLZ-GHA 有可能成为 PEG-GHA 的安全替代品。
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引用次数: 0
Tumor Receptor-Mediated Morphological Transformation and In Situ Polymerization of Diacetylene-Containing Lipidated Peptide Amphiphile on Cell Membranes for Tumor Suppression. 肿瘤受体介导的形态学转变和细胞膜上含二乙炔脂质肽双亲的原位聚合用于抑制肿瘤。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-28 DOI: 10.1021/acs.biomac.4c00936
Niannian Lv, Zhuo-Ran Yang, Jing-Wen Fan, Teng Ma, Kehan Du, Huimin Qin, Hao Jiang, Jintao Zhu

In situ polymerization on cell membranes can decrease cell mobility, which may inhibit tumor growth and invasion. However, the initiation of radical polymerization traditionally requires exogenous catalysts or free radical initiators, which might cause side effects in normal tissues. Herein, we synthesized a Y-type diacetylene-containing lipidated peptide amphiphile (TCDA-KFFFFK(GRGDS)-YIGSR, Y-DLPA) targeting integrins and laminin receptors on murine mammary carcinoma 4T1 cells, which underwent nanoparticle-to-nanofiber morphological transformation and in situ polymerization on cell membranes. Specifically, the polymerized Y-DLPA induced 4T1 cell apoptosis and disturbed the substance exchange and metabolism. In vitro assays demonstrated that the polymerized Y-DLPA nanofibers decreased the migration capacity of 4T1 cells, potentially suppressing tumor invasion and metastasis. When administered locally to 4T1 tumor-bearing mice, the Y-DLPA nanoparticles formed a biomimetic extracellular matrix that effectively suppressed tumor growth. This study provides an in situ polymerization strategy that can serve as an effective drug-free biomaterial with low side effects for antitumor therapy.

细胞膜上的原位聚合可降低细胞的流动性,从而抑制肿瘤的生长和侵袭。然而,传统的自由基聚合需要外源催化剂或自由基引发剂,这可能会对正常组织产生副作用。在此,我们合成了一种以小鼠乳腺癌 4T1 细胞上的整合素和层粘连蛋白受体为靶点的含 Y 型二乙炔脂化肽双亲化合物(TCDA-KFFFFK(GRGDS)-YIGSR,Y-DLPA),它在细胞膜上发生了纳米颗粒到纳米纤维的形态转变和原位聚合。具体而言,聚合的 Y-DLPA 可诱导 4T1 细胞凋亡,并干扰其物质交换和代谢。体外实验表明,聚合的 Y-DLPA 纳米纤维降低了 4T1 细胞的迁移能力,从而可能抑制肿瘤的侵袭和转移。在对 4T1 肿瘤小鼠进行局部给药时,Y-DLPA 纳米颗粒形成的仿生细胞外基质可有效抑制肿瘤生长。这项研究提供了一种原位聚合策略,可作为一种有效的无药物、低副作用的生物材料用于抗肿瘤治疗。
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引用次数: 0
Genipap Oil as a Natural Cross-Linker for Biodegradable and Low-Ecotoxicity Porous Absorbents via Reactive Extrusion. 通过反应挤压法将 Genipap 油用作可生物降解和低毒多孔吸收剂的天然交联剂。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-25 DOI: 10.1021/acs.biomac.4c00883
Liliana B Hurtado, Mercedes Jiménez-Rosado, Maryam Nejati, Faiza Rasheed, Thomas Prade, Amparo Jiménez-Quero, Marcos A Sabino, Antonio J Capezza

Proteins derived from agroindustrial coproducts and a natural cross-linking agent (genipap oil containing genipin) were used to develop porous materials by reactive extrusion for replacing fossil-based absorbents. Incorporating genipap oil allowed the production of lightweight structures with high saline uptake (above 1000%) and competing retention capacity despite their porous nature. The mechanical response of the genipap-cross-linked materials was superior to that of the noncross-linked ones and comparable to those cross-linked using commercial genipin. The extruded products were hemocompatible and soil-biodegradable in less than 6 weeks. The compounds generated by the degradation process were not found to be toxic to the soil, showing a high bioassimilation capacity by promoting grass growth. The results demonstrate the potential of biopolymers and new green cross-linkers to produce fully renewable-based superabsorbents in hygiene products with low ecotoxicity. The study further promotes the production of these absorbents using low-cost proteins and continuous processing such as reactive extrusion.

从农用工业副产品中提取的蛋白质和一种天然交联剂(含有基因蛋白的基因油)被用来通过反应挤压法开发多孔材料,以替代化石吸收剂。加入基尼泊油后,生产出的轻质结构尽管具有多孔性,但却具有很高的盐水吸收率(超过 1000%)和竞争性截留能力。基尼泊交联材料的机械响应优于非交联材料,与使用商用基尼泊交联的材料相当。挤压产品具有血液相容性,可在 6 周内在土壤中生物降解。降解过程中产生的化合物不会对土壤产生毒性,并通过促进草的生长显示出较高的生物同化能力。研究结果表明,生物聚合物和新型绿色交联剂具有生产完全可再生的低生态毒性超级吸附剂的潜力。这项研究进一步促进了使用低成本蛋白质和连续加工(如反应挤压)生产这些吸收剂。
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引用次数: 0
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