首页 > 最新文献

Biomacromolecules最新文献

英文 中文
Exploring the Interaction of Human α-Synuclein with Polyethylene Nanoplastics: Insights from Computational Modeling and Experimental Corroboration. 探索人类α-突触核蛋白与聚乙烯纳米塑料的相互作用:计算建模和实验证实的启示。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-23 DOI: 10.1021/acs.biomac.4c00918
Neha Tripathi, Florent Saudrais, Mona Rysak, Laura Pieri, Serge Pin, Guido Roma, Jean-Philippe Renault, Yves Boulard

Plastics, particularly microplastics (MPs) and nanoplastics (NP), have become major environmental and health concerns due to their high chemical stability. The highly hydrophobic plastics enter living organisms through reversible interactions with biomolecules, forming biocoronas. Following recent reports on plastics breaching the blood-brain barrier, the binding behavior of human α-synuclein (hαSn) with polyethylene-based (PE) plastics was evaluated by using molecular dynamics simulations and experimental methods. The results provided three important findings: (i) hαSn transitions from an open helical to a compact conformation, enhancing intramolecular interactions, (ii) nonoxidized PE NPs (NPnonox) rapidly adsorb hαSn, as supported by experimental data from dynamic light scattering and adsorption isotherms, altering its structure, and (iii) the oxidized NP (NPox) failed to capture hαSn. These interactions were dominated by the N-terminal domain of hαSn, with major contributions from hydrophobic amino acids. These findings raise concerns about the potential pharmacological effects of NP-protein interactions on human health.

塑料,尤其是微塑料(MPs)和纳米塑料(NP),因其化学稳定性高,已成为环境和健康方面的主要问题。高疏水性塑料通过与生物大分子的可逆相互作用进入生物体内,形成生物噬菌体。继最近有关塑料突破血脑屏障的报道之后,我们利用分子动力学模拟和实验方法评估了人类α-突触核蛋白(hαSn)与聚乙烯基(PE)塑料的结合行为。研究结果提供了三个重要发现:(i) hαSn 从开放螺旋构象转变为紧凑构象,增强了分子内相互作用;(ii) 非氧化聚乙烯 NP(NPnonox)迅速吸附 hαSn,动态光散射和吸附等温线的实验数据证明了这一点,并改变了其结构;(iii) 氧化 NP(NPox)未能捕获 hαSn。这些相互作用由 hαSn 的 N 端结构域主导,疏水性氨基酸对其有主要贡献。这些发现引起了人们对 NP 蛋白相互作用对人类健康的潜在药理作用的关注。
{"title":"Exploring the Interaction of Human α-Synuclein with Polyethylene Nanoplastics: Insights from Computational Modeling and Experimental Corroboration.","authors":"Neha Tripathi, Florent Saudrais, Mona Rysak, Laura Pieri, Serge Pin, Guido Roma, Jean-Philippe Renault, Yves Boulard","doi":"10.1021/acs.biomac.4c00918","DOIUrl":"https://doi.org/10.1021/acs.biomac.4c00918","url":null,"abstract":"<p><p>Plastics, particularly microplastics (MPs) and nanoplastics (NP), have become major environmental and health concerns due to their high chemical stability. The highly hydrophobic plastics enter living organisms through reversible interactions with biomolecules, forming biocoronas. Following recent reports on plastics breaching the blood-brain barrier, the binding behavior of human α-synuclein (hαSn) with polyethylene-based (PE) plastics was evaluated by using molecular dynamics simulations and experimental methods. The results provided three important findings: (i) hαSn transitions from an open helical to a compact conformation, enhancing intramolecular interactions, (ii) nonoxidized PE NPs (NPnonox) rapidly adsorb hαSn, as supported by experimental data from dynamic light scattering and adsorption isotherms, altering its structure, and (iii) the oxidized NP (NPox) failed to capture hαSn. These interactions were dominated by the N-terminal domain of hαSn, with major contributions from hydrophobic amino acids. These findings raise concerns about the potential pharmacological effects of NP-protein interactions on human health.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":""},"PeriodicalIF":5.5,"publicationDate":"2024-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142491089","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of Secondary Amine and Molecular Weight on the Biological Activities of Cationic Amphipathic Antimicrobial Macromolecules. 仲胺和分子量对阳离子两性抗菌大分子生物活性的影响
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-14 Epub Date: 2024-09-23 DOI: 10.1021/acs.biomac.4c01137
Zeyu Shao, Hao Luo, Thi Hanh Quyen Nguyen, Edgar H H Wong

Cationic amphipathic antimicrobial agents inspired by antimicrobial peptides (AMPs) have shown potential in combating multidrug-resistant bacteria because of minimal resistance development. Here, this study focuses on the development of novel cationic amphipathic macromolecules in the form of dendrons and polymers with different molecular weights that employ secondary amine piperidine derivative as the cationic moiety. Generally, secondary amine compounds, especially at low molecular weights, have stronger bacteriostatic, bactericidal, and inner membrane disruption abilities than those of their primary amine counterparts. Low molecular weight D2 dendrons with two cationic centers and one hydrophobic dodecyl chain produce outstanding synergistic activity with the antibiotic rifampicin against Escherichia coli, where one-eighth of the standalone dose of D2 dendrons could reduce the concentration of rifampicin required by up to 4000-fold. The low molecular weight compounds are also less toxic and therefore have higher therapeutic index values compared to compounds with larger molecular weights. This study thus reveals key information that may inform the design of future synthetic AMPs and mimics, specifically, the design of low-molecular-weight compounds with secondary amine as the cationic center to achieve high antimicrobial potency and biocompatibility.

受抗菌肽(AMPs)的启发,阳离子两性抗菌剂因其最小的耐药性发展而在抗击多重耐药细菌方面显示出潜力。本研究的重点是开发新型阳离子两性大分子,其形式为树枝状和不同分子量的聚合物,采用仲胺哌啶衍生物作为阳离子分子。一般来说,仲胺化合物,尤其是低分子量的仲胺化合物,比其对应的伯胺化合物具有更强的抑菌、杀菌和破坏内膜的能力。具有两个阳离子中心和一个疏水性十二烷基链的低分子量 D2 树枝状化合物与抗生素利福平对大肠杆菌具有出色的协同活性。与分子量较大的化合物相比,低分子量化合物的毒性也较低,因此治疗指数值较高。因此,这项研究揭示了一些关键信息,可为未来合成 AMP 和模拟物的设计提供参考,特别是设计以仲胺为阳离子中心的低分子量化合物,以实现高抗菌效力和生物相容性。
{"title":"Effects of Secondary Amine and Molecular Weight on the Biological Activities of Cationic Amphipathic Antimicrobial Macromolecules.","authors":"Zeyu Shao, Hao Luo, Thi Hanh Quyen Nguyen, Edgar H H Wong","doi":"10.1021/acs.biomac.4c01137","DOIUrl":"10.1021/acs.biomac.4c01137","url":null,"abstract":"<p><p>Cationic amphipathic antimicrobial agents inspired by antimicrobial peptides (AMPs) have shown potential in combating multidrug-resistant bacteria because of minimal resistance development. Here, this study focuses on the development of novel cationic amphipathic macromolecules in the form of dendrons and polymers with different molecular weights that employ secondary amine piperidine derivative as the cationic moiety. Generally, secondary amine compounds, especially at low molecular weights, have stronger bacteriostatic, bactericidal, and inner membrane disruption abilities than those of their primary amine counterparts. Low molecular weight <b>D2</b> dendrons with two cationic centers and one hydrophobic dodecyl chain produce outstanding synergistic activity with the antibiotic rifampicin against <i>Escherichia coli</i>, where one-eighth of the standalone dose of <b>D2</b> dendrons could reduce the concentration of rifampicin required by up to 4000-fold. The low molecular weight compounds are also less toxic and therefore have higher therapeutic index values compared to compounds with larger molecular weights. This study thus reveals key information that may inform the design of future synthetic AMPs and mimics, specifically, the design of low-molecular-weight compounds with secondary amine as the cationic center to achieve high antimicrobial potency and biocompatibility.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":"6899-6912"},"PeriodicalIF":5.5,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11483101/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142277303","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Curdlan-Mediated Syngeneic RNAi against NF-κB in Glial Cells Protects Cerebral Vessels in the TBI Mouse Model. Curdlan 介导的针对神经胶质细胞中 NF-κB 的共基因 RNAi 可保护创伤性脑损伤小鼠模型的脑血管。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-14 Epub Date: 2024-09-25 DOI: 10.1021/acs.biomac.4c01001
Ruijun Wang, Wunile Zhu, Nuomin Bai, Muben Li, Saqirila Saqirila, Hangai Bai, Hai Xiao, Huricha Baigude, Naikang Gao

Traumatic brain injury (TBI) activates the NF-κB pathway in microglia and astrocytes, which secrete pro-inflammatory cytokines that disrupt the blood-brain barrier (BBB). Curdlan derivatives are promising carriers for the delivery of siRNA drugs. Herein, we evaluated the glial cell specificity, siRNA delivery efficiency, and the subsequent phenotypic regulation of glial cells by the Curdlan derivatives in the TBI mouse model. Our in vitro and in vivo studies confirmed that the (1) pAVC4 or CuMAN polymer encapsulating siRNA were internalized by astrocytes and microglia in a receptor-dependent manner; (2) systemic administration of the pAVC4 or CuMAN polymer encapsulating siRNA resulted in significant gene silencing efficiency, altered the phenotypic polarization of glial cells, and regulated the secretion of inflammatory cytokines; (3) this lessened neuroinflammation, ameliorated BBB destruction, and improved vascular recovery. These data suggested that pAVC4 and CuMAN polymers are promising RNA delivery vehicles that can efficiently deliver siRNA to the target cells.

创伤性脑损伤(TBI)会激活小胶质细胞和星形胶质细胞的 NF-κB 通路,从而分泌促炎细胞因子,破坏血脑屏障(BBB)。Curdlan 衍生物是一种很有前景的 siRNA 药物载体。在此,我们评估了 Curdlan 衍生物在创伤性脑损伤小鼠模型中对神经胶质细胞的特异性、siRNA 的递送效率以及随后对神经胶质细胞的表型调节。我们的体外和体内研究证实:(1)包裹 siRNA 的 pAVC4 或 CuMAN 聚合物能以受体依赖的方式被星形胶质细胞和小胶质细胞内化;(2)全身给药包裹 siRNA 的 pAVC4 或 CuMAN 聚合物可显著沉默基因,改变神经胶质细胞的表型极化,调节炎性细胞因子的分泌;(3)从而减轻神经炎症,改善 BBB 破坏,改善血管恢复。这些数据表明,pAVC4 和 CuMAN 聚合物是一种很有前景的 RNA 运送载体,能有效地将 siRNA 运送到靶细胞。
{"title":"Curdlan-Mediated Syngeneic RNAi against NF-κB in Glial Cells Protects Cerebral Vessels in the TBI Mouse Model.","authors":"Ruijun Wang, Wunile Zhu, Nuomin Bai, Muben Li, Saqirila Saqirila, Hangai Bai, Hai Xiao, Huricha Baigude, Naikang Gao","doi":"10.1021/acs.biomac.4c01001","DOIUrl":"10.1021/acs.biomac.4c01001","url":null,"abstract":"<p><p>Traumatic brain injury (TBI) activates the NF-κB pathway in microglia and astrocytes, which secrete pro-inflammatory cytokines that disrupt the blood-brain barrier (BBB). Curdlan derivatives are promising carriers for the delivery of siRNA drugs. Herein, we evaluated the glial cell specificity, siRNA delivery efficiency, and the subsequent phenotypic regulation of glial cells by the Curdlan derivatives in the TBI mouse model. Our <i>in vitro</i> and <i>in vivo</i> studies confirmed that the (1) pAVC4 or CuMAN polymer encapsulating siRNA were internalized by astrocytes and microglia in a receptor-dependent manner; (2) systemic administration of the pAVC4 or CuMAN polymer encapsulating siRNA resulted in significant gene silencing efficiency, altered the phenotypic polarization of glial cells, and regulated the secretion of inflammatory cytokines; (3) this lessened neuroinflammation, ameliorated BBB destruction, and improved vascular recovery. These data suggested that pAVC4 and CuMAN polymers are promising RNA delivery vehicles that can efficiently deliver siRNA to the target cells.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":"6780-6790"},"PeriodicalIF":5.5,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142337321","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Accelerated Ten-Gram-Scale Synthesis of One-Component Multifunctional Sequence-Defined Ionizable Amphiphilic Janus Dendrimer 97. 单组分多功能序列可离子化两亲性 Janus 树枝状聚合物的十克级加速合成 97.
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-14 Epub Date: 2024-10-03 DOI: 10.1021/acs.biomac.4c01107
Mahwish Arshad, Elena N Atochina-Vasserman, Srijay S Chenna, Devendra S Maurya, Muhammad Irhash Shalihin, Dipankar Sahoo, Alec C Lewis, Jordan J Lewis, Nathan Ona, Jessica A Vasserman, Houping Ni, Wook-Jin Park, Drew Weissman, Virgil Percec

One-component multifunctional sequence-defined ionizable amphiphilic Janus dendrimers (IAJDs) were discovered in our laboratories in 2021 to represent a new class of synthetic vectors for the targeted delivery of messenger RNA (mRNA). They coassemble with mRNA by simple injection of their ethanol solution into a pH 4 acetate buffer containing the nucleic acid into monodisperse dendrimersome nanoparticles (DNPs) with predictable dimensions. DNPs are competitive with 4-component lipid nanoparticles (LNPs), which are used in commercial COVID-19 vaccines, except that IAJDs are prepared in fewer reaction steps than each individual component of the LNPs. This simple methodology for the synthesis of IAJDs and their coassembly with mRNA into DNPs, together with the precise placement of their individual components and indefinite stability at room temperature in air, make them attractive candidates for the development of nanomedicine-based targeted mRNA delivery. Access to the large-scale synthesis of IAJDs without the need for sophisticated technologies, instrumentation, and synthetic skills is expected to open numerous new opportunities worldwide in nanomedicine. The goal of this publication is to report an accelerated ten-gram-scale synthesis of IAJD97 from inexpensive food additives obtained from renewable plant phenolic acid starting materials by methodologies accessible to any laboratory. This accelerated synthesis can be accomplished in 4 days. We expect that the work reported here will impact the field of nanomedicine in both developed and less developed countries.

我们的实验室于 2021 年发现了单组分多功能序列定义可电离两亲性 Janus 树枝状分子(IAJDs),它代表了一类新的合成载体,可定向递送信使 RNA(mRNA)。只需将它们的乙醇溶液注入含有核酸的 pH 值为 4 的醋酸盐缓冲液中,它们就能与 mRNA 共同组装成具有可预测尺寸的单分散树枝状体纳米颗粒(DNPs)。DNPs 与商用 COVID-19 疫苗中使用的 4 组分脂质纳米粒子(LNPs)具有竞争性,但 IAJDs 的制备反应步骤比 LNPs 的每个单独组分都要少。这种简单的 IAJDs 合成方法及其与 mRNA 共同组装成 DNPs 的过程,加上其单个成分的精确定位和在室温空气中的无限稳定性,使它们成为开发基于纳米药物的靶向 mRNA 递送的极具吸引力的候选物质。无需复杂的技术、仪器和合成技能就能大规模合成 IAJDs,有望为全球纳米医学领域带来无数新机遇。本刊物的目的是报告一种利用可再生植物酚酸起始材料制成的廉价食品添加剂,通过任何实验室都可采用的方法,加速合成十克级的 IAJD97。这种加速合成可在 4 天内完成。我们希望本文报告的工作将对发达国家和欠发达国家的纳米医学领域产生影响。
{"title":"Accelerated Ten-Gram-Scale Synthesis of One-Component Multifunctional Sequence-Defined Ionizable Amphiphilic Janus Dendrimer 97.","authors":"Mahwish Arshad, Elena N Atochina-Vasserman, Srijay S Chenna, Devendra S Maurya, Muhammad Irhash Shalihin, Dipankar Sahoo, Alec C Lewis, Jordan J Lewis, Nathan Ona, Jessica A Vasserman, Houping Ni, Wook-Jin Park, Drew Weissman, Virgil Percec","doi":"10.1021/acs.biomac.4c01107","DOIUrl":"10.1021/acs.biomac.4c01107","url":null,"abstract":"<p><p>One-component multifunctional sequence-defined ionizable amphiphilic Janus dendrimers (IAJDs) were discovered in our laboratories in 2021 to represent a new class of synthetic vectors for the targeted delivery of messenger RNA (mRNA). They coassemble with mRNA by simple injection of their ethanol solution into a pH 4 acetate buffer containing the nucleic acid into monodisperse dendrimersome nanoparticles (DNPs) with predictable dimensions. DNPs are competitive with 4-component lipid nanoparticles (LNPs), which are used in commercial COVID-19 vaccines, except that IAJDs are prepared in fewer reaction steps than each individual component of the LNPs. This simple methodology for the synthesis of IAJDs and their coassembly with mRNA into DNPs, together with the precise placement of their individual components and indefinite stability at room temperature in air, make them attractive candidates for the development of nanomedicine-based targeted mRNA delivery. Access to the large-scale synthesis of IAJDs without the need for sophisticated technologies, instrumentation, and synthetic skills is expected to open numerous new opportunities worldwide in nanomedicine. The goal of this publication is to report an accelerated ten-gram-scale synthesis of IAJD97 from inexpensive food additives obtained from renewable plant phenolic acid starting materials by methodologies accessible to any laboratory. This accelerated synthesis can be accomplished in 4 days. We expect that the work reported here will impact the field of nanomedicine in both developed and less developed countries.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":"6871-6882"},"PeriodicalIF":5.5,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142370192","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Label-Free Tracking of Hepatitis B Virus Core Protein Capsid Assembly in Real-Time Using Protein Charge Transfer Spectra. 利用蛋白质电荷转移谱实时无标记跟踪乙型肝炎病毒核心蛋白囊壳组装。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-14 Epub Date: 2024-06-20 DOI: 10.1021/acs.biomac.4c00521
Shah Ekramul Alom, Karthik Swaminathan, V Nuzelu, Alka Singh, Hugues de Rocquigny, Rajaram Swaminathan

Hepatitis B virions are double-shelled particles, with a diameter of 40-42 nm, consisting of a nucleocapsid called the HBV core protein (HBV Cp). It is an ordered assembly of 90-120 homodimers arranged in an icosahedral symmetry. Both the full-length HBV Cp and the first-149 residue domain, HBV Cp149, can spontaneously assemble in vitro into capsids with 120 Cp dimers (T = 4) or 90 Cp dimers (T = 3), triggered by high ionic strength of 0.25-0.5 M NaCl. The assembly disassembly of HBV Cp149 capsids are generally studied by light scattering, size-exclusion chromatography, atomic force microscopy, transmission electron microscopy, and other high-end expensive techniques. Here, we report a simple, yet robust, label-free technique exploiting protein charge transfer spectra (ProCharTS) to monitor the capsid assembly in real-time. ProCharTS absorption in the near UV-visible region (250-800 nm) arises when photoinduced electron transfer occurs from HOMO of COO- in glutamate (donor) to LUMO of NH3+ in lysine or polypeptide backbone (acceptor) of the protein. Alternatively, it can also occur from polypeptide backbone (donor) to acceptor in arginine, histidine, or lysine cation. ProCharTS is observed profusely among proximal charge clusters in folded proteins. Here, we show that, ProCharTS absorption among growing HBV capsids is amplified when HBV Cp homodimers assemble, generating new contacts among charged residues in the dimer-dimer interface. We notice a time-dependent sigmoidal increase in ProCharTS absorbance and luminescence during capsid formation in comparison to pure dimers. Additionally, a combined approach of anisotropy-based fluorescence assay is reported, where an increased fluorescence anisotropy was observed in capsids as compared to native and unfolded dimers. We conclude that ProCharTS can serve as a sensitive label-free tool for rapid tracking of capsid assembly in real-time and characterize the assembled capsids from dimers.

乙型肝炎病毒是一种双壳颗粒,直径为 40-42 纳米,由称为 HBV 核心蛋白(HBV Cp)的核头状体组成。它是由 90-120 个二十面体对称排列的同源二聚体组成的有序组合体。全长的 HBV Cp 和第一个 149 残基结构域 HBV Cp149 都能在 0.25-0.5 M NaCl 的高离子强度作用下,在体外自发组装成具有 120 Cp 二聚体(T = 4)或 90 Cp 二聚体(T = 3)的噬菌体。研究 HBV Cp149 荚膜的组装和解体一般采用光散射、尺寸排阻色谱、原子力显微镜、透射电子显微镜等高端昂贵的技术。在这里,我们报告了一种利用蛋白质电荷转移光谱(ProCharTS)来实时监测囊体组装的简单而稳健的无标记技术。当光诱导电子从谷氨酸(供体)中 COO- 的 HOMO 转移到蛋白质赖氨酸或多肽骨架(受体)中 NH3+ 的 LUMO 时,ProCharTS 就会在近紫外可见光区(250-800 nm)产生吸收。或者,它也可以从多肽骨架(供体)到精氨酸、组氨酸或赖氨酸阳离子中的受体发生。在折叠蛋白质的近端电荷簇中,可以大量观察到 ProCharTS。在这里,我们发现,当 HBV Cp 同源二聚体组装时,二聚体界面上的带电残基之间会产生新的接触,从而扩大了生长中的 HBV 包壳对 ProCharTS 的吸收。我们注意到,与纯二聚体相比,在噬菌体形成过程中,ProCharTS 的吸光度和发光度呈随时间变化的曲线上升。此外,我们还报告了一种基于各向异性的荧光检测组合方法,与原生和未折叠的二聚体相比,在纤帽中观察到荧光各向异性增加。我们的结论是,ProCharTS 可以作为一种灵敏的无标记工具,用于实时快速跟踪噬菌体的组装,并从二聚体中鉴定组装后的噬菌体。
{"title":"Label-Free Tracking of Hepatitis B Virus Core Protein Capsid Assembly in Real-Time Using Protein Charge Transfer Spectra.","authors":"Shah Ekramul Alom, Karthik Swaminathan, V Nuzelu, Alka Singh, Hugues de Rocquigny, Rajaram Swaminathan","doi":"10.1021/acs.biomac.4c00521","DOIUrl":"10.1021/acs.biomac.4c00521","url":null,"abstract":"<p><p>Hepatitis B virions are double-shelled particles, with a diameter of 40-42 nm, consisting of a nucleocapsid called the HBV core protein (HBV Cp). It is an ordered assembly of 90-120 homodimers arranged in an icosahedral symmetry. Both the full-length HBV Cp and the first-149 residue domain, HBV Cp149, can spontaneously assemble in vitro into capsids with 120 Cp dimers (<i>T</i> = 4) or 90 Cp dimers (<i>T</i> = 3), triggered by high ionic strength of 0.25-0.5 M NaCl. The assembly disassembly of HBV Cp149 capsids are generally studied by light scattering, size-exclusion chromatography, atomic force microscopy, transmission electron microscopy, and other high-end expensive techniques. Here, we report a simple, yet robust, label-free technique exploiting protein charge transfer spectra (ProCharTS) to monitor the capsid assembly in real-time. ProCharTS absorption in the near UV-visible region (250-800 nm) arises when photoinduced electron transfer occurs from HOMO of COO<sup>-</sup> in glutamate (<i>donor</i>) to LUMO of NH<sub>3</sub><sup>+</sup> in lysine <i>or</i> polypeptide backbone (<i>acceptor</i>) of the protein. Alternatively, it can also occur from polypeptide backbone (<i>donor</i>) to <i>acceptor</i> in arginine, histidine, or lysine cation. ProCharTS is observed profusely among proximal charge clusters in folded proteins. Here, we show that, ProCharTS absorption among growing HBV capsids is amplified when HBV Cp homodimers assemble, generating new contacts among charged residues in the dimer-dimer interface. We notice a time-dependent sigmoidal increase in ProCharTS absorbance and luminescence during capsid formation in comparison to pure dimers. Additionally, a combined approach of anisotropy-based fluorescence assay is reported, where an increased fluorescence anisotropy was observed in capsids as compared to native and unfolded dimers. We conclude that ProCharTS can serve as a sensitive label-free tool for rapid tracking of capsid assembly in real-time and characterize the assembled capsids from dimers.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":"6425-6438"},"PeriodicalIF":5.5,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141425668","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Detailed Study of the Interactions between Glycopolymers in the Presence of Metal Ions through Quartz Crystal Microbalance Method. 通过石英晶体微天平法详细研究金属离子存在时糖聚合物之间的相互作用。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-14 Epub Date: 2024-09-05 DOI: 10.1021/acs.biomac.4c00493
Tomoya Sumura, Masanori Nagao, Hikaru Matsumoto, Tsukuru Masuda, Madoka Takai, Yoshiko Miura

Polymer self-assemblies driven by enthalpic interactions, such as hydrogen bonding and electrostatic interactions, exhibit distinct properties compared to those driven by hydrophobic interactions. Carbohydrate-carbohydrate interactions, which are observed in physiological phenomena, also fall under enthalpic interactions. Our group previously reported on self-assemblies of methacrylate-type glycopolymers carrying mannose units in the presence of calcium ions; however, a detailed study of these interactions was lacking. In this work, we investigated the interactions between glycopolymers using the quartz crystal microbalance (QCM) method. Our quantitative analysis revealed that the interactions between the glycopolymers were influenced by the carbohydrate structures in the side chains, the types of divalent metal ions, and the structures of the polymer main chains. Notably, the strongest interaction was observed in the combination of methacrylate-type glycopolymers carrying mannose units and calcium ions, demonstrating their potential as a driving force for polymer self-assembly.

由氢键和静电作用等焓相互作用驱动的聚合物自组装与由疏水相互作用驱动的聚合物自组装相比,表现出截然不同的特性。在生理现象中观察到的碳水化合物-碳水化合物相互作用也属于焓相互作用的范畴。我们的研究小组曾报道过携带甘露糖单元的甲基丙烯酸酯型聚糖在钙离子存在下的自组装,但缺乏对这些相互作用的详细研究。在这项工作中,我们使用石英晶体微天平(QCM)方法研究了糖聚合物之间的相互作用。我们的定量分析显示,糖聚合物之间的相互作用受到侧链中碳水化合物结构、二价金属离子类型以及聚合物主链结构的影响。值得注意的是,在含有甘露糖单元和钙离子的甲基丙烯酸酯型糖聚合物组合中观察到了最强的相互作用,这表明它们具有作为聚合物自组装驱动力的潜力。
{"title":"Detailed Study of the Interactions between Glycopolymers in the Presence of Metal Ions through Quartz Crystal Microbalance Method.","authors":"Tomoya Sumura, Masanori Nagao, Hikaru Matsumoto, Tsukuru Masuda, Madoka Takai, Yoshiko Miura","doi":"10.1021/acs.biomac.4c00493","DOIUrl":"10.1021/acs.biomac.4c00493","url":null,"abstract":"<p><p>Polymer self-assemblies driven by enthalpic interactions, such as hydrogen bonding and electrostatic interactions, exhibit distinct properties compared to those driven by hydrophobic interactions. Carbohydrate-carbohydrate interactions, which are observed in physiological phenomena, also fall under enthalpic interactions. Our group previously reported on self-assemblies of methacrylate-type glycopolymers carrying mannose units in the presence of calcium ions; however, a detailed study of these interactions was lacking. In this work, we investigated the interactions between glycopolymers using the quartz crystal microbalance (QCM) method. Our quantitative analysis revealed that the interactions between the glycopolymers were influenced by the carbohydrate structures in the side chains, the types of divalent metal ions, and the structures of the polymer main chains. Notably, the strongest interaction was observed in the combination of methacrylate-type glycopolymers carrying mannose units and calcium ions, demonstrating their potential as a driving force for polymer self-assembly.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":"6416-6424"},"PeriodicalIF":5.5,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142138558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Smart Hydrogel Dressing Enhances the Healing of Chronic Infectious Diabetic Wounds through Dual-Barrier Drug Delivery Action. 智能水凝胶敷料通过双屏障给药作用促进慢性感染性糖尿病伤口的愈合
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-14 Epub Date: 2024-09-05 DOI: 10.1021/acs.biomac.4c01041
Yaxing Li, Heng Gong, Tingjiang Gan, Xikun Ma, Qirui Geng, Shijiu Yin, Hui Zhang, Ye Wu

Chronic diabetic wounds struggle to heal due to drug-resistant bacterial infections, oxidative stress microenvironment, and immune dysfunction. At present, the disease has become a huge clinical challenge. Multifunctional hydrogels with antibacterial, antioxidant, and anti-inflammatory properties are becoming an emerging trend in the treatment of chronic wounds. However, matching different bioactive functions with the wound healing process to sequentially exert antibacterial, antioxidant, anti-inflammatory, and immunomodulatory functions remains a significant challenge. In this research, a hydrogel dressing with bactericidal and anti-inflammatory properties was synthesized by crafting a pH/ROS-responsive scaffold from phenylboronic acid-grafted hyaluronic acid (HA-PBA) and 4-arm-PEG-dopamine (4A-PEG-Dopa), employing dynamic borate ester bonds. This structure was then infused with the antimicrobial peptide (AMP) and ROS-sensitive micelle mPEG-TK-PLGA loaded with quercetin (QC). This dressing embodied a dual-barrier drug delivery mechanism, engineered for the prolonged and consistent liberation of QC. In the experiment, the hydrogel dissociated within the acidic microenvironment of diabetic wounds, thereby liberating the encapsulated micelles and AMP. Upon further dissociation, the micelles release QC due to the ROS-abundant microenvironment, which could relieve oxidative stress and encourage M2 polarization of macrophage via the Akt/STAT6 signaling pathway. Therefore, this smart delivery system, developed through our innovative approach, holds promise for treating chronic infectious diabetic wounds.

由于耐药性细菌感染、氧化应激微环境和免疫功能障碍,慢性糖尿病伤口难以愈合。目前,这种疾病已成为一项巨大的临床挑战。具有抗菌、抗氧化和抗炎特性的多功能水凝胶正成为治疗慢性伤口的新兴趋势。然而,如何将不同的生物活性功能与伤口愈合过程相匹配,从而有序地发挥抗菌、抗氧化、抗炎和免疫调节功能仍是一个重大挑战。本研究利用动态硼酸酯键,将苯硼酸接枝透明质酸(HA-PBA)和 4-臂-PEG-多巴胺(4A-PEG-Dopa)制成 pH/ROS 响应支架,合成了一种具有杀菌和消炎特性的水凝胶敷料。然后,在这种结构中注入了抗菌肽(AMP)和对 ROS 敏感的胶束 mPEG-TK-PLGA,并添加了槲皮素(QC)。这种敷料体现了一种双屏障给药机制,旨在延长 QC 的持续释放时间。在实验中,水凝胶在糖尿病伤口的酸性微环境中解离,从而释放出包裹的胶束和 AMP。进一步解离后,胶束会在ROS丰富的微环境中释放QC,从而缓解氧化应激,并通过Akt/STAT6信号通路促进巨噬细胞的M2极化。因此,通过我们的创新方法开发的这种智能传输系统有望用于治疗慢性感染性糖尿病伤口。
{"title":"Smart Hydrogel Dressing Enhances the Healing of Chronic Infectious Diabetic Wounds through Dual-Barrier Drug Delivery Action.","authors":"Yaxing Li, Heng Gong, Tingjiang Gan, Xikun Ma, Qirui Geng, Shijiu Yin, Hui Zhang, Ye Wu","doi":"10.1021/acs.biomac.4c01041","DOIUrl":"10.1021/acs.biomac.4c01041","url":null,"abstract":"<p><p>Chronic diabetic wounds struggle to heal due to drug-resistant bacterial infections, oxidative stress microenvironment, and immune dysfunction. At present, the disease has become a huge clinical challenge. Multifunctional hydrogels with antibacterial, antioxidant, and anti-inflammatory properties are becoming an emerging trend in the treatment of chronic wounds. However, matching different bioactive functions with the wound healing process to sequentially exert antibacterial, antioxidant, anti-inflammatory, and immunomodulatory functions remains a significant challenge. In this research, a hydrogel dressing with bactericidal and anti-inflammatory properties was synthesized by crafting a pH/ROS-responsive scaffold from phenylboronic acid-grafted hyaluronic acid (HA-PBA) and 4-arm-PEG-dopamine (4A-PEG-Dopa), employing dynamic borate ester bonds. This structure was then infused with the antimicrobial peptide (AMP) and ROS-sensitive micelle mPEG-TK-PLGA loaded with quercetin (QC). This dressing embodied a dual-barrier drug delivery mechanism, engineered for the prolonged and consistent liberation of QC. In the experiment, the hydrogel dissociated within the acidic microenvironment of diabetic wounds, thereby liberating the encapsulated micelles and AMP. Upon further dissociation, the micelles release QC due to the ROS-abundant microenvironment, which could relieve oxidative stress and encourage M2 polarization of macrophage via the Akt/STAT6 signaling pathway. Therefore, this smart delivery system, developed through our innovative approach, holds promise for treating chronic infectious diabetic wounds.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":"6814-6829"},"PeriodicalIF":5.5,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142138559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Designing Biomimetic Strain-Stiffening into Synthetic Hydrogels. 在合成水凝胶中设计仿生应变加固。
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-14 Epub Date: 2024-10-02 DOI: 10.1021/acs.biomac.4c00756
Elisabeth Prince

Biological tissues are mechanoresponsive; that is, their properties dynamically change in response to mechanical stimuli. For example, in response to shear or elongational strain, collagen, fibrin, actin, and other filamentous biomaterials undergo dramatic strain-stiffening. Above a critical strain, their stiffness increases over orders of magnitude. While it is widely accepted that the stiffness of biological tissues impacts cell phenotype and several diseases, the biological impact of strain-stiffening remains understudied. Synthetic hydrogels that mimic the mechanoresponsive nature of biological tissues could serve as an in vitro platform for these studies. This review highlights recent efforts to mimic the strain-stiffening behavior of biological materials in synthetic hydrogels. We discuss the design principles for imparting synthetic hydrogels with biomimetic strain-stiffening, critically compare designs of strain-stiffening hydrogels that have been reported thus far, and discuss their use as in vitro platforms to probe how strain-stiffening impacts cell behavior, diseases, and other biological processes.

生物组织具有机械响应性,也就是说,它们的特性会随着机械刺激而发生动态变化。例如,在剪切或伸长应变的作用下,胶原蛋白、纤维蛋白、肌动蛋白和其他丝状生物材料会发生剧烈的应变-僵化。超过临界应变时,它们的刚度会增加几个数量级。虽然人们普遍认为生物组织的硬度会影响细胞表型和多种疾病,但应变僵化对生物的影响仍未得到充分研究。模拟生物组织机械弹性性质的合成水凝胶可作为这些研究的体外平台。本综述重点介绍了最近在合成水凝胶中模拟生物材料应变加固行为的努力。我们讨论了赋予合成水凝胶仿生物应变加固特性的设计原则,对迄今已报道的应变加固水凝胶的设计进行了批判性比较,并讨论了将它们用作体外平台以探究应变加固如何影响细胞行为、疾病和其他生物过程的问题。
{"title":"Designing Biomimetic Strain-Stiffening into Synthetic Hydrogels.","authors":"Elisabeth Prince","doi":"10.1021/acs.biomac.4c00756","DOIUrl":"10.1021/acs.biomac.4c00756","url":null,"abstract":"<p><p>Biological tissues are mechanoresponsive; that is, their properties dynamically change in response to mechanical stimuli. For example, in response to shear or elongational strain, collagen, fibrin, actin, and other filamentous biomaterials undergo dramatic strain-stiffening. Above a critical strain, their stiffness increases over orders of magnitude. While it is widely accepted that the stiffness of biological tissues impacts cell phenotype and several diseases, the biological impact of strain-stiffening remains understudied. Synthetic hydrogels that mimic the mechanoresponsive nature of biological tissues could serve as an in vitro platform for these studies. This review highlights recent efforts to mimic the strain-stiffening behavior of biological materials in synthetic hydrogels. We discuss the design principles for imparting synthetic hydrogels with biomimetic strain-stiffening, critically compare designs of strain-stiffening hydrogels that have been reported thus far, and discuss their use as in vitro platforms to probe how strain-stiffening impacts cell behavior, diseases, and other biological processes.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":"6283-6295"},"PeriodicalIF":5.5,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142360746","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Lignin-Based Visible Light-Triggered Nitric Oxide Nanogenerator for Antibacterial Applications. 用于抗菌的木质素基可见光触发一氧化氮纳米发生器
IF 5.5 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-14 Epub Date: 2024-09-28 DOI: 10.1021/acs.biomac.4c00775
Xiaoya Li, Qian Zhang, Weidong Wu, Jinxin Lin, Yingchun Liu, Liheng Chen, Xueqing Qiu

Nitric oxide (NO) has received growing attention as an effective antibacterial agent with broad-spectrum activity and a low risk of resistance. However, it remains challenging to develop effective, controllable, and biocompatible NO-releasing materials. Here, we report a novel NO nanogenerator (AL-BNN6-PEG) self-assembled by lignin, a UV-absorbing and hydrophobic NO donor (N,N'-disec-butyl-N,N'-dinitroso-1,4-phenylenediamine, BNN6), and PEG-DSPE2000. It was discovered that upon visible light irradiation (450-460 nm), BNN6 can be decomposed by lignin within micellar nanoparticles via a photoinduced electron transfer mechanism in the aqueous medium. Lignin not only served as a sustainable carrier, enhancing the water dispersity of BNN6, but also acted as a biocompatible photosensitizer, triggering BNN6 decomposition with the concomitant release of NO. As a result, the micellar nanoparticles displayed superior antibacterial effects against Gram-negative and Gram-positive bacteria upon visible light illumination. Moreover, MTT assay revealed the negligible cytotoxic effect of the micellar nanoparticles to the mouse fibroblast cells (L929). This research provides more insight into the BNN6 decomposition mechanism and demonstrates a straightforward, effective, and biocompatible strategy for controlled NO-mediated antibacterial applications.

一氧化氮(NO)作为一种具有广谱活性和低抗药性风险的有效抗菌剂,受到越来越多的关注。然而,开发有效、可控、生物兼容的一氧化氮释放材料仍具有挑战性。在此,我们报告了一种新型氮氧化物纳米发生器(AL-BNN6-PEG),它由木质素、紫外线吸收性和疏水性氮氧化物供体(N,N'-二癸基-N,N'-二亚硝基-1,4-苯二胺,BNN6)和 PEG-DSPE2000 自组装而成。研究发现,在可见光(450-460 纳米)照射下,BNN6 可在水介质中通过光诱导电子传递机制被胶束纳米颗粒中的木质素分解。木质素不仅可以作为一种可持续的载体,增强 BNN6 在水中的分散性,还可以作为一种生物相容性光敏剂,引发 BNN6 分解,同时释放出 NO。因此,在可见光照射下,胶束纳米粒子对革兰氏阴性菌和革兰氏阳性菌显示出卓越的抗菌效果。此外,MTT 试验表明,胶束纳米粒子对小鼠成纤维细胞(L929)的细胞毒性作用微乎其微。这项研究为 BNN6 的分解机制提供了更深入的见解,并为氮氧化物介导的可控抗菌应用展示了一种直接、有效和生物兼容的策略。
{"title":"Lignin-Based Visible Light-Triggered Nitric Oxide Nanogenerator for Antibacterial Applications.","authors":"Xiaoya Li, Qian Zhang, Weidong Wu, Jinxin Lin, Yingchun Liu, Liheng Chen, Xueqing Qiu","doi":"10.1021/acs.biomac.4c00775","DOIUrl":"10.1021/acs.biomac.4c00775","url":null,"abstract":"<p><p>Nitric oxide (NO) has received growing attention as an effective antibacterial agent with broad-spectrum activity and a low risk of resistance. However, it remains challenging to develop effective, controllable, and biocompatible NO-releasing materials. Here, we report a novel NO nanogenerator (AL-BNN6-PEG) self-assembled by lignin, a UV-absorbing and hydrophobic NO donor (<i>N</i>,<i>N</i>'-di<i>sec</i>-butyl-<i>N</i>,<i>N</i>'-dinitroso-1,4-phenylenediamine, BNN6), and PEG-DSPE<sub>2000</sub>. It was discovered that upon visible light irradiation (450-460 nm), BNN6 can be decomposed by lignin within micellar nanoparticles via a photoinduced electron transfer mechanism in the aqueous medium. Lignin not only served as a sustainable carrier, enhancing the water dispersity of BNN6, but also acted as a biocompatible photosensitizer, triggering BNN6 decomposition with the concomitant release of NO. As a result, the micellar nanoparticles displayed superior antibacterial effects against Gram-negative and Gram-positive bacteria upon visible light illumination. Moreover, MTT assay revealed the negligible cytotoxic effect of the micellar nanoparticles to the mouse fibroblast cells (L929). This research provides more insight into the BNN6 decomposition mechanism and demonstrates a straightforward, effective, and biocompatible strategy for controlled NO-mediated antibacterial applications.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":"6624-6634"},"PeriodicalIF":5.5,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142337323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Peptidic "Molecular Beacon" for Collagen. 胶原蛋白的多肽 "分子信标
IF 8.3 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-14 Epub Date: 2024-09-03 DOI: 10.1021/acs.biomac.4c01000
Jinyi Yang, Yifan Quan, Yifu Ouyang, Kong Ooi Tan, Ralph T Weber, Robert G Griffin, Ronald T Raines

Collagen-mimetic peptides (CMP) have been invaluable tools for understanding the structure and function of collagen, which is the most abundant protein in animals. CMPs have also been developed as probes that detect damaged collagen because of the specificity required to form a collagen triple helix. These probes are not, however, ratiometric. Here, we used EPR spectroscopy to determine the end-to-end distances of CMPs that do not form stable homotrimeric helices. We found that those distances are shorter than the distances in the context of a collagen triple helix, suggesting their potential utility as a "molecular beacon" and guiding the choice and location of a pendant fluorophore-quencher pair. We then showed that a molecular beacon based on a glycine-(2S,4S)-4-fluoroproline-(2S,4R)-4-hydroxyproline tripeptide repeat and EDANS-DABCYL pair enabled the ratiometric detection of its binding to both other CMPs and natural mammalian collagen. These results provide guidance for the development of a new modality for detecting damaged collagen in physiological settings.

胶原蛋白是动物体内含量最高的蛋白质,胶原蛋白仿生肽(CMP)是了解胶原蛋白结构和功能的宝贵工具。由于形成胶原三螺旋所需的特异性,CMP 还被开发为检测受损胶原的探针。然而,这些探针并不具有比率测量功能。在这里,我们使用 EPR 光谱测定了不能形成稳定同三聚体螺旋的 CMP 的端到端距离。我们发现,这些距离比胶原蛋白三螺旋的距离要短,这表明它们具有作为 "分子信标 "的潜在用途,可以指导荧光团-淬灭剂配对的选择和位置。我们随后证明,基于甘氨酸-(2S,4S)-4-氟脯氨酸-(2S,4R)-4-羟基脯氨酸三肽重复和 EDANS-DABCYL 对的分子信标可对其与其他 CMP 和天然哺乳动物胶原的结合进行比率检测。这些结果为开发在生理环境中检测受损胶原蛋白的新方法提供了指导。
{"title":"Peptidic \"Molecular Beacon\" for Collagen.","authors":"Jinyi Yang, Yifan Quan, Yifu Ouyang, Kong Ooi Tan, Ralph T Weber, Robert G Griffin, Ronald T Raines","doi":"10.1021/acs.biomac.4c01000","DOIUrl":"10.1021/acs.biomac.4c01000","url":null,"abstract":"<p><p>Collagen-mimetic peptides (CMP) have been invaluable tools for understanding the structure and function of collagen, which is the most abundant protein in animals. CMPs have also been developed as probes that detect damaged collagen because of the specificity required to form a collagen triple helix. These probes are not, however, ratiometric. Here, we used EPR spectroscopy to determine the end-to-end distances of CMPs that do not form stable homotrimeric helices. We found that those distances are shorter than the distances in the context of a collagen triple helix, suggesting their potential utility as a \"molecular beacon\" and guiding the choice and location of a pendant fluorophore-quencher pair. We then showed that a molecular beacon based on a glycine-(2<i>S</i>,4<i>S</i>)-4-fluoroproline-(2<i>S</i>,4<i>R</i>)-4-hydroxyproline tripeptide repeat and EDANS-DABCYL pair enabled the ratiometric detection of its binding to both other CMPs and natural mammalian collagen. These results provide guidance for the development of a new modality for detecting damaged collagen in physiological settings.</p>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":" ","pages":"6773-6779"},"PeriodicalIF":8.3,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11563731/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142118282","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Biomacromolecules
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1