首页 > 最新文献

European Journal of Medicinal Chemistry最新文献

英文 中文
Epigenetic enzyme inhibitors targeting DNA, histone, and RNA methylation: Mechanisms and therapeutic applications in cancer 靶向DNA、组蛋白和RNA甲基化的表观遗传酶抑制剂:机制及其在癌症中的治疗应用
IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-20 DOI: 10.1016/j.ejmech.2026.118590
Yiman Wang , Chen Ma , Xinya Liu , Junkai Cheng , Dan Zhu , Peng Liu , Peng Qi , Xiankai Li , Jian Gu , Qin Wang
Epigenetic modifications, such as DNA methylation, histone methylation, and RNA methylation, dynamically regulate gene transcription and play critical roles in cellular differentiation, development, and disease, especially cancer. Inhibitors targeting the enzymes responsible for these modifications have emerged as promising cancer therapies. For instance, DNMT inhibitors (e.g., azacitidine, decitabine) can reactivate tumor suppressor genes via demethylation; HMT inhibitors like tazemetostat and EPZ-5676 modulate chromatin structure to exert anti-tumor effects; and RNA methyltransferase inhibitors such as STM2457 disrupt RNA metabolism to suppress tumor growth. Despite encouraging preclinical and clinical results, challenges including toxicity and drug resistance remain obstacles to broader clinical application. This review summarizes recent advances in epigenetic inhibitor development to support the design of safer and more effective targeted cancer therapies.
表观遗传修饰,如DNA甲基化、组蛋白甲基化和RNA甲基化,动态调节基因转录,并在细胞分化、发育和疾病,特别是癌症中发挥关键作用。针对负责这些修饰的酶的抑制剂已经成为有希望的癌症治疗方法。例如,DNMT抑制剂(如阿扎胞苷、地西他滨)可以通过去甲基化重新激活肿瘤抑制基因;他zemetostat和EPZ-5676等HMT抑制剂通过调节染色质结构发挥抗肿瘤作用;RNA甲基转移酶抑制剂如STM2457破坏RNA代谢抑制肿瘤生长。尽管临床前和临床结果令人鼓舞,但包括毒性和耐药性在内的挑战仍然是广泛临床应用的障碍。本文综述了表观遗传抑制剂的最新进展,以支持设计更安全、更有效的靶向癌症治疗方法。
{"title":"Epigenetic enzyme inhibitors targeting DNA, histone, and RNA methylation: Mechanisms and therapeutic applications in cancer","authors":"Yiman Wang ,&nbsp;Chen Ma ,&nbsp;Xinya Liu ,&nbsp;Junkai Cheng ,&nbsp;Dan Zhu ,&nbsp;Peng Liu ,&nbsp;Peng Qi ,&nbsp;Xiankai Li ,&nbsp;Jian Gu ,&nbsp;Qin Wang","doi":"10.1016/j.ejmech.2026.118590","DOIUrl":"10.1016/j.ejmech.2026.118590","url":null,"abstract":"<div><div>Epigenetic modifications, such as DNA methylation, histone methylation, and RNA methylation, dynamically regulate gene transcription and play critical roles in cellular differentiation, development, and disease, especially cancer. Inhibitors targeting the enzymes responsible for these modifications have emerged as promising cancer therapies. For instance, DNMT inhibitors (e.g., azacitidine, decitabine) can reactivate tumor suppressor genes via demethylation; HMT inhibitors like tazemetostat and EPZ-5676 modulate chromatin structure to exert anti-tumor effects; and RNA methyltransferase inhibitors such as STM2457 disrupt RNA metabolism to suppress tumor growth. Despite encouraging preclinical and clinical results, challenges including toxicity and drug resistance remain obstacles to broader clinical application. This review summarizes recent advances in epigenetic inhibitor development to support the design of safer and more effective targeted cancer therapies.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"306 ","pages":"Article 118590"},"PeriodicalIF":5.9,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146005743","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Design, synthesis, and anti-liver fibrosis activity of novel non-steroidal vitamin D receptor agonists based on phenyl-indole scaffold 基于苯基吲哚支架的新型非甾体维生素D受体激动剂的设计、合成和抗肝纤维化活性
IF 6.7 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-20 DOI: 10.1016/j.ejmech.2026.118592
Yu Tong, Nuo Cheng, Chun Guan, Yue Wu, Yi Gao, Shihao Liu, Cong Wang, Can Zhang
{"title":"Design, synthesis, and anti-liver fibrosis activity of novel non-steroidal vitamin D receptor agonists based on phenyl-indole scaffold","authors":"Yu Tong, Nuo Cheng, Chun Guan, Yue Wu, Yi Gao, Shihao Liu, Cong Wang, Can Zhang","doi":"10.1016/j.ejmech.2026.118592","DOIUrl":"https://doi.org/10.1016/j.ejmech.2026.118592","url":null,"abstract":"","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"34 1","pages":""},"PeriodicalIF":6.7,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146014767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The mitochondrial gambit: Re-evaluating Antimycin A as a multi-pronged anti-cancer agent 线粒体策略:重新评估抗霉素A作为多管齐下的抗癌药物
IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-20 DOI: 10.1016/j.ejmech.2026.118596
Woo Hyun Park
Malignancy's profound dependence on mitochondrial metabolism establishes the organelle as a paramount therapeutic target. This review offers a comprehensive analysis of Antimycin A (AMA), a mitochondrial complex III inhibitor, framing it as a potent, multi-pronged anti-cancer agent. While AMA primarily disrupts oxidative phosphorylation (OXPHOS)—triggering a cascade of adenosine triphosphate (ATP) depletion, massive reactive oxygen species (ROS) surges, and subsequent apoptosis—its therapeutic potential extends significantly to non-canonical functions crucial for countering adaptive resilience. Specifically, AMA acts as a Bcl-2 homology 3 (BH3) mimetic by directly inhibiting B-cell lymphoma-extra large (Bcl-xL) and induces ROS-mediated proteasomal degradation of the c-Myc oncoprotein. Additionally, it effectively targets chemoresistant cancer stem cells (CSCs) by suppressing Wnt/β-catenin signaling. By juxtaposing its powerful anti-neoplastic activities with pharmacological limitations such as systemic toxicity, this paper evaluates ongoing strategies to develop safer, clinically viable analogues. Ultimately, AMA is presented not merely as an experimental tool, but as a pivotal lead compound whose mechanisms illuminate critical vulnerabilities in cancer, providing a strategic blueprint for the future of mitochondria-targeted oncology.
恶性肿瘤对线粒体代谢的高度依赖使细胞器成为最重要的治疗靶点。这篇综述提供了一个全面的分析抗霉素a (AMA),线粒体复合物III抑制剂,框架它是一个有效的,多管齐下的抗癌药物。虽然AMA主要破坏氧化磷酸化(OXPHOS)——触发三磷酸腺苷(ATP)耗竭的级联反应,大量活性氧(ROS)激增,以及随后的细胞凋亡——但它的治疗潜力显著扩展到对抗适应性恢复的非规范功能。具体来说,AMA作为Bcl-2同源3 (BH3)模拟物,通过直接抑制b细胞淋巴瘤-超大型(Bcl-xL),诱导ros介导的c-Myc癌蛋白的蛋白酶体降解。此外,它通过抑制Wnt/β-catenin信号传导有效靶向化疗耐药癌症干细胞(CSCs)。通过将其强大的抗肿瘤活性与药理学局限性(如全身毒性)并列,本文评估了开发更安全、临床可行的类似物的持续策略。最终,AMA不仅作为一种实验工具,而且作为一种关键的先导化合物,其机制阐明了癌症的关键脆弱性,为线粒体靶向肿瘤学的未来提供了战略蓝图。
{"title":"The mitochondrial gambit: Re-evaluating Antimycin A as a multi-pronged anti-cancer agent","authors":"Woo Hyun Park","doi":"10.1016/j.ejmech.2026.118596","DOIUrl":"10.1016/j.ejmech.2026.118596","url":null,"abstract":"<div><div>Malignancy's profound dependence on mitochondrial metabolism establishes the organelle as a paramount therapeutic target. This review offers a comprehensive analysis of Antimycin A (AMA), a mitochondrial complex III inhibitor, framing it as a potent, multi-pronged anti-cancer agent. While AMA primarily disrupts oxidative phosphorylation (OXPHOS)—triggering a cascade of adenosine triphosphate (ATP) depletion, massive reactive oxygen species (ROS) surges, and subsequent apoptosis—its therapeutic potential extends significantly to non-canonical functions crucial for countering adaptive resilience. Specifically, AMA acts as a Bcl-2 homology 3 (BH3) mimetic by directly inhibiting B-cell lymphoma-extra large (Bcl-xL) and induces ROS-mediated proteasomal degradation of the c-Myc oncoprotein. Additionally, it effectively targets chemoresistant cancer stem cells (CSCs) by suppressing Wnt/β-catenin signaling. By juxtaposing its powerful anti-neoplastic activities with pharmacological limitations such as systemic toxicity, this paper evaluates ongoing strategies to develop safer, clinically viable analogues. Ultimately, AMA is presented not merely as an experimental tool, but as a pivotal lead compound whose mechanisms illuminate critical vulnerabilities in cancer, providing a strategic blueprint for the future of mitochondria-targeted oncology.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"306 ","pages":"Article 118596"},"PeriodicalIF":5.9,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146014763","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Histone Methyltransferases SMYD2: the Potential Pharmacological Target on Cancers and Aging-related Diseases Treatment 组蛋白甲基转移酶SMYD2:癌症和衰老相关疾病治疗的潜在药理靶点
IF 6.7 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-20 DOI: 10.1016/j.ejmech.2026.118572
Meng Gu, Menglin Zhu, Jianghong Cai, Qian Ding, Wei Hu, Qingwen Hu, Hao Zhang, Xuanzhe Zhu, Yi Zhun Zhu
{"title":"Histone Methyltransferases SMYD2: the Potential Pharmacological Target on Cancers and Aging-related Diseases Treatment","authors":"Meng Gu, Menglin Zhu, Jianghong Cai, Qian Ding, Wei Hu, Qingwen Hu, Hao Zhang, Xuanzhe Zhu, Yi Zhun Zhu","doi":"10.1016/j.ejmech.2026.118572","DOIUrl":"https://doi.org/10.1016/j.ejmech.2026.118572","url":null,"abstract":"","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"10 1","pages":""},"PeriodicalIF":6.7,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146001182","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Corrigendum to “Impact of site-specific conjugation strategies on the pharmacokinetics of antibody-conjugated radiotherapeutics” [Eur J Med Chem. 2024 Dec 15; 280:116927. doi: 10.1016/j.ejmech.2024.116927. PMID: 39378827] “位点特异性偶联策略对抗体偶联放疗药代动力学的影响”的更正[J] Med Chem. 2024年12月15日;280:116927。doi: 10.1016 / j.ejmech.2024.116927。PMID: 39378827)。
IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-20 DOI: 10.1016/j.ejmech.2026.118589
Ábel Nagy , David Ulmert , Wahed Zedan , Claire M. Storey , Julie Park , Susanne Geres , Katharina Lückerath , Kjell Sjöström , Hadis Westin , Norbert Peekhaus , Daniel LJ. Thorek , Amelie Eriksson Karlström , Mohamed Altai
{"title":"Corrigendum to “Impact of site-specific conjugation strategies on the pharmacokinetics of antibody-conjugated radiotherapeutics” [Eur J Med Chem. 2024 Dec 15; 280:116927. doi: 10.1016/j.ejmech.2024.116927. PMID: 39378827]","authors":"Ábel Nagy ,&nbsp;David Ulmert ,&nbsp;Wahed Zedan ,&nbsp;Claire M. Storey ,&nbsp;Julie Park ,&nbsp;Susanne Geres ,&nbsp;Katharina Lückerath ,&nbsp;Kjell Sjöström ,&nbsp;Hadis Westin ,&nbsp;Norbert Peekhaus ,&nbsp;Daniel LJ. Thorek ,&nbsp;Amelie Eriksson Karlström ,&nbsp;Mohamed Altai","doi":"10.1016/j.ejmech.2026.118589","DOIUrl":"10.1016/j.ejmech.2026.118589","url":null,"abstract":"","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"305 ","pages":"Article 118589"},"PeriodicalIF":5.9,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146008347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery of Focal Adhesion Kinase (FAK) activators to promote intestinal mucosal healing 发现局灶黏附激酶(FAK)激活剂促进肠黏膜愈合
IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-20 DOI: 10.1016/j.ejmech.2026.118606
Ricardo Gallardo-Macias , Qinggang Wang , Ahmed Adham Raafat Elsayed , Guiming Liu , Henry L. Wong , Gunda I. Georg , Marc D. Basson , Vadim J. Gurvich
Chronic use of nonsteroidal anti-inflammatory drugs (NSAIDs) causes injuries in the gastrointestinal mucosa. Proton pump inhibitors are the most common drugs prescribed to decrease upper gastrointestinal side effects caused by NSAIDs. However, they worsen the lower GI injuries caused by NSAIDs and do not directly promote restitution of the epithelial mucosa. Focal adhesion kinase (FAK) is essential in wound healing and epithelial sheet migration, making it an attractive pharmacological target. We have designed, synthesized, and evaluated a series of novel, specific FAK activators that increase FAK phosphorylation at Tyr-397 and promote mucosal healing in a Caco-2 model. We found that novel analogs 10bHCl, 10kHCl, and our original lead 5aHCl are preclinical candidates for further studies towards mucosal wound healing. For lead 5aHCl, which had previously shown healing in a mouse model, we performed a pharmacokinetic study. There are currently no therapeutics that promote mucosal healing, and no specific FAK activators beyond our work.
长期使用非甾体抗炎药(NSAIDs)会导致胃肠道黏膜损伤。质子泵抑制剂是减少非甾体抗炎药引起的上胃肠道副作用的最常用药物。然而,它们加重了非甾体抗炎药引起的下消化道损伤,并不能直接促进上皮粘膜的恢复。局灶黏附激酶(FAK)在伤口愈合和上皮片迁移中是必不可少的,使其成为一个有吸引力的药理学靶点。在Caco-2模型中,我们设计、合成并评估了一系列新的特异性FAK激活剂,这些激活剂可以增加FAK在Tyr-397位点的磷酸化并促进粘膜愈合。我们发现新的类似物10bHCl, 10kHCl和我们最初的先导物5aHCl是进一步研究粘膜伤口愈合的临床前候选物。对于先前在小鼠模型中显示愈合的5aHCl铅,我们进行了药代动力学研究。目前还没有促进粘膜愈合的治疗方法,也没有特异性的FAK激活剂。
{"title":"Discovery of Focal Adhesion Kinase (FAK) activators to promote intestinal mucosal healing","authors":"Ricardo Gallardo-Macias ,&nbsp;Qinggang Wang ,&nbsp;Ahmed Adham Raafat Elsayed ,&nbsp;Guiming Liu ,&nbsp;Henry L. Wong ,&nbsp;Gunda I. Georg ,&nbsp;Marc D. Basson ,&nbsp;Vadim J. Gurvich","doi":"10.1016/j.ejmech.2026.118606","DOIUrl":"10.1016/j.ejmech.2026.118606","url":null,"abstract":"<div><div>Chronic use of nonsteroidal anti-inflammatory drugs (NSAIDs) causes injuries in the gastrointestinal mucosa. Proton pump inhibitors are the most common drugs prescribed to decrease upper gastrointestinal side effects caused by NSAIDs. However, they worsen the lower GI injuries caused by NSAIDs and do not directly promote restitution of the epithelial mucosa. Focal adhesion kinase (FAK) is essential in wound healing and epithelial sheet migration, making it an attractive pharmacological target. We have designed, synthesized, and evaluated a series of novel, specific FAK activators that increase FAK phosphorylation at Tyr-397 and promote mucosal healing in a Caco-2 model. We found that novel analogs <strong>10bHCl</strong>, <strong>10kHCl,</strong> and our original lead <strong>5aHCl</strong> are preclinical candidates for further studies towards mucosal wound healing. For lead <strong>5aHCl</strong>, which had previously shown healing in a mouse model, we performed a pharmacokinetic study. There are currently no therapeutics that promote mucosal healing, and no specific FAK activators beyond our work.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"306 ","pages":"Article 118606"},"PeriodicalIF":5.9,"publicationDate":"2026-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146014770","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Design and anti-inflammatory activity evaluation of tryptophan analogs as novel dipeptidyl peptidase I inhibitors 新型二肽基肽酶I抑制剂色氨酸类似物的设计及抗炎活性评价
IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-19 DOI: 10.1016/j.ejmech.2026.118570
Daxing Shi , Xianan Liu , Jingyuan Huang , Chenxiao Li , Qiansong Chen , Feilong Zhou , Xing Chen
Dipeptidyl peptidase I (DPP-I) mediates the processing and maturation of various serine proteases by cleaving dipeptide structures from N-terminus of zymogen proteins. This process enables DPP-I to participate in inflammatory cascades, thereby establishing it as a key therapeutic target for inflammatory diseases. Here, starting from a serendipitously discovered molecular block with weak DPP-I inhibitory activity, a series of tryptophan analogs were designed and synthesized. Following biological activity evaluation, compound C10b as a potent DPP-I inhibitor was identified. Through structure-activity relationship and docking analyses, the binding mode and key interactions were elucidated. In vitro results confirmed C10b could bind to and inhibit intracellular DPP-I activity, and further down-regulate the activity and expression levels of downstream neutrophil serine proteases, while exhibiting excellent anti-inflammatory activity and regulating the secretion of various inflammatory factors. In vivo results demonstrated C10b possessed acceptable toxicity and good pharmacodynamic activity. In the adjuvant-induced arthritis model in rats, C10b exerted an anti-inflammatory effect and reversed joint inflammation and tissue damage. Collectively, as a novel DPP-I inhibitor, C10b exhibits nice anti-inflammatory activity and considerable potential for further development, which supports its application in development of therapeutic agent for neutrophil-associated inflammatory diseases.
二肽基肽酶I (DPP-I)通过从酶原蛋白的n端切割二肽结构来介导各种丝氨酸蛋白酶的加工和成熟。这一过程使dpp - 1参与炎症级联反应,从而使其成为炎症性疾病的关键治疗靶点。在这里,从偶然发现的具有弱dpp - 1抑制活性的分子块开始,设计并合成了一系列色氨酸类似物。经生物活性评价,化合物C10b是一种有效的dpp - 1抑制剂。通过构效关系和对接分析,阐明了它们的结合模式和关键相互作用。体外实验结果证实C10b能结合并抑制胞内dpp - 1活性,进一步下调下游中性粒细胞丝氨酸蛋白酶的活性和表达水平,同时表现出优异的抗炎活性,调节多种炎症因子的分泌。体内实验结果表明,C10b具有良好的毒性和药效学活性。在佐剂诱导的大鼠关节炎模型中,C10b具有抗炎作用,可逆转关节炎症和组织损伤。综上所述,C10b作为一种新型的DPP-I抑制剂,具有良好的抗炎活性和巨大的开发潜力,支持其在中性粒细胞相关炎症性疾病治疗剂开发中的应用。
{"title":"Design and anti-inflammatory activity evaluation of tryptophan analogs as novel dipeptidyl peptidase I inhibitors","authors":"Daxing Shi ,&nbsp;Xianan Liu ,&nbsp;Jingyuan Huang ,&nbsp;Chenxiao Li ,&nbsp;Qiansong Chen ,&nbsp;Feilong Zhou ,&nbsp;Xing Chen","doi":"10.1016/j.ejmech.2026.118570","DOIUrl":"10.1016/j.ejmech.2026.118570","url":null,"abstract":"<div><div>Dipeptidyl peptidase I (DPP-I) mediates the processing and maturation of various serine proteases by cleaving dipeptide structures from N-terminus of zymogen proteins. This process enables DPP-I to participate in inflammatory cascades, thereby establishing it as a key therapeutic target for inflammatory diseases. Here, starting from a serendipitously discovered molecular block with weak DPP-I inhibitory activity, a series of tryptophan analogs were designed and synthesized. Following biological activity evaluation, compound <strong>C10b</strong> as a potent DPP-I inhibitor was identified. Through structure-activity relationship and docking analyses, the binding mode and key interactions were elucidated. <em>In vitro</em> results confirmed <strong>C10b</strong> could bind to and inhibit intracellular DPP-I activity, and further down-regulate the activity and expression levels of downstream neutrophil serine proteases, while exhibiting excellent anti-inflammatory activity and regulating the secretion of various inflammatory factors. <em>In vivo</em> results demonstrated <strong>C10b</strong> possessed acceptable toxicity and good pharmacodynamic activity. In the adjuvant-induced arthritis model in rats, <strong>C10b</strong> exerted an anti-inflammatory effect and reversed joint inflammation and tissue damage. Collectively, as a novel DPP-I inhibitor, <strong>C10b</strong> exhibits nice anti-inflammatory activity and considerable potential for further development, which supports its application in development of therapeutic agent for neutrophil-associated inflammatory diseases.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"306 ","pages":"Article 118570"},"PeriodicalIF":5.9,"publicationDate":"2026-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146001184","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Charting the evolving landscape of kinase hinge-binding chemotypes beyond flatland: a systematic analysis and opportunities for sp3-rich binders 超越平面的激酶铰链结合化学型的演变图景:sp3-Rich结合物的系统分析和机遇
IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-19 DOI: 10.1016/j.ejmech.2026.118595
Shangde Liu , Tianlei Han , Zhenyu Zhang , Hui Yu , Albert A. Antolin , Huabin Hu
ATP-competitive kinase inhibitors represent one of the most successful modalities in targeted therapy, yet their discovery has historically relied on a narrow repertoire of hinge-binding motifs. Here, we report a large-scale structural analysis of 4370 kinase–ligand complexes spanning 289 human protein kinases, providing the most comprehensive publicly available catalogue of hinge-binding scaffolds to date. Systematic extraction and consolidation identified 846 unique hinge binders, enabling quantitative assessment of their frequency, promiscuity, and residue interactions across the kinome. The analysis reveals that hinge binders remain predominantly planar heteroaromatic chemotypes, and that progress over the past three decades has largely involved incremental optimization of these limited motifs rather than exploration of sp3-enriched scaffolds. Novel opportunities for chemical innovation were identified through noncanonical interactions, such as halogen bonding, as well as through conformationally restricted designs, including macrocycles to generate sp3-enriched hinge-binding moieties. Although limited in number, these examples demonstrate that nonplanar chemotypes can achieve hinge engagement comparable to that of rigid planar binders while substantially expanding the accessible chemical space of kinase inhibitors. Collectively, this work delineates the structural landscape of kinase hinge binders and provides a hinge-binding resource to enable scaffold hopping and focused library design, while identifying opportunities for the discovery of next-generation ATP-competitive kinase inhibitors within a highly competitive therapeutic space.
atp竞争性激酶抑制剂是靶向治疗中最成功的模式之一,但它们的发现历来依赖于一个狭窄的铰链结合基序库。在这里,我们报告了4370激酶配体复合物的大规模结构分析,涵盖289种人类蛋白激酶,提供了迄今为止最全面的铰链结合支架公开目录。系统的提取和整合鉴定出846个独特的铰链结合物,从而可以定量评估它们在kinome中的频率、混杂性和残基相互作用。分析表明,铰链结合物仍然以平面杂芳香化学型为主,过去三十年的进展主要是对这些有限基序的增量优化,而不是对富含sp3的支架的探索。通过非规范相互作用,如卤素键,以及通过构象限制设计,包括产生富含sp3的铰链结合部分的大环,确定了化学创新的新机会。虽然数量有限,但这些例子表明,非平面化学型可以实现与刚性平面结合剂相当的铰链接合,同时大大扩大了激酶抑制剂的可及化学空间。总的来说,这项工作描绘了激酶铰链结合物的结构景观,并提供了一个铰链结合资源,以实现支架跳跃和集中文库设计,同时在高度竞争的治疗领域中确定了发现下一代atp竞争性激酶抑制剂的机会。
{"title":"Charting the evolving landscape of kinase hinge-binding chemotypes beyond flatland: a systematic analysis and opportunities for sp3-rich binders","authors":"Shangde Liu ,&nbsp;Tianlei Han ,&nbsp;Zhenyu Zhang ,&nbsp;Hui Yu ,&nbsp;Albert A. Antolin ,&nbsp;Huabin Hu","doi":"10.1016/j.ejmech.2026.118595","DOIUrl":"10.1016/j.ejmech.2026.118595","url":null,"abstract":"<div><div>ATP-competitive kinase inhibitors represent one of the most successful modalities in targeted therapy, yet their discovery has historically relied on a narrow repertoire of hinge-binding motifs. Here, we report a large-scale structural analysis of 4370 kinase–ligand complexes spanning 289 human protein kinases, providing the most comprehensive publicly available catalogue of hinge-binding scaffolds to date. Systematic extraction and consolidation identified 846 unique hinge binders, enabling quantitative assessment of their frequency, promiscuity, and residue interactions across the kinome. The analysis reveals that hinge binders remain predominantly planar heteroaromatic chemotypes, and that progress over the past three decades has largely involved incremental optimization of these limited motifs rather than exploration of sp<sup>3</sup>-enriched scaffolds. Novel opportunities for chemical innovation were identified through noncanonical interactions, such as halogen bonding, as well as through conformationally restricted designs, including macrocycles to generate sp<sup>3</sup>-enriched hinge-binding moieties. Although limited in number, these examples demonstrate that nonplanar chemotypes can achieve hinge engagement comparable to that of rigid planar binders while substantially expanding the accessible chemical space of kinase inhibitors. Collectively, this work delineates the structural landscape of kinase hinge binders and provides a hinge-binding resource to enable scaffold hopping and focused library design, while identifying opportunities for the discovery of next-generation ATP-competitive kinase inhibitors within a highly competitive therapeutic space.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"306 ","pages":"Article 118595"},"PeriodicalIF":5.9,"publicationDate":"2026-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146001183","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diversified design strategies for small-molecule PROTACs: How do we select? 小分子PROTACs的多样化设计策略:我们如何选择?
IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-17 DOI: 10.1016/j.ejmech.2026.118593
Qing-Song Chen, Jian-Hua Liang
Although PROTAC technology has revolutionized drug discovery by enabling the degradation of previously undruggable proteins, the clinical translation of traditional PROTACs has been hindered by limitations in E3 ligase availability, suboptimal drug-like properties, and a narrow target scope. In recent years, the emergence of diversified novel PROTAC design strategies, such as chaperone-mediated PROTAC (CHAMP), mini-PROTAC, covalent PROTAC, HyTTD, and pro-PROTAC, has elevated the technology to new heights, accelerating its clinical advancement. However, a critical question remains: How can we select the most appropriate strategy among these options? We summarized and analyzed their strengths and limitations, covering optimization and expansion of E3 ligase-dependent and E3 ligase-independent degrader strategies, undruggable targets degrader strategies, linker optimization and expansion strategies, and pro-PROTAC strategies. Furthermore, we provide guidance on selecting appropriate strategies based on specific target characteristics for designing effective PROTAC, with the aim of facilitating the translation of these innovative approaches toward clinical applications.
尽管PROTAC技术通过降解以前不可药物的蛋白质而彻底改变了药物发现,但传统PROTACs的临床翻译受到E3连接酶可用性的限制、次优的药物样性质和狭窄的靶标范围的阻碍。近年来,多种新型PROTAC设计策略的出现,如伴侣介导的PROTAC (CHAMP)、mini-PROTAC、共价PROTAC、HyTTD、pro-PROTAC等,将该技术提升到新的高度,加速了其临床进展。然而,一个关键的问题仍然存在:我们如何在这些选项中选择最合适的策略?我们总结并分析了它们的优势和局限性,包括E3连接酶依赖性和E3连接酶非依赖性降解物策略的优化和扩展、不可药物靶标降解物策略、连接物优化和扩展策略以及pro-PROTAC策略。此外,我们还提供了基于特定目标特征选择合适策略的指导,以设计有效的PROTAC,旨在促进这些创新方法向临床应用的转化。
{"title":"Diversified design strategies for small-molecule PROTACs: How do we select?","authors":"Qing-Song Chen,&nbsp;Jian-Hua Liang","doi":"10.1016/j.ejmech.2026.118593","DOIUrl":"10.1016/j.ejmech.2026.118593","url":null,"abstract":"<div><div>Although PROTAC technology has revolutionized drug discovery by enabling the degradation of previously undruggable proteins, the clinical translation of traditional PROTACs has been hindered by limitations in E3 ligase availability, suboptimal drug-like properties, and a narrow target scope. In recent years, the emergence of diversified novel PROTAC design strategies, such as chaperone-mediated PROTAC (CHAMP), mini-PROTAC, covalent PROTAC, HyTTD, and pro-PROTAC, has elevated the technology to new heights, accelerating its clinical advancement. However, a critical question remains: How can we select the most appropriate strategy among these options? We summarized and analyzed their strengths and limitations, covering optimization and expansion of E3 ligase-dependent and E3 ligase-independent degrader strategies, undruggable targets degrader strategies, linker optimization and expansion strategies, and pro-PROTAC strategies. Furthermore, we provide guidance on selecting appropriate strategies based on specific target characteristics for designing effective PROTAC, with the aim of facilitating the translation of these innovative approaches toward clinical applications.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"306 ","pages":"Article 118593"},"PeriodicalIF":5.9,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145995780","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Structure-activity relationship of N-cyclopropylmethyl-7α-(m-methylaminophenyl)-6,14-endoethano-northebaine derivatives as G-protein-biased KOR-selective agonists n-环丙基甲基-7α-(间甲基氨基苯基)-6,14-内乙醇-北啡衍生物作为g蛋白偏倚的kor选择性激动剂的构效关系
IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL Pub Date : 2026-01-17 DOI: 10.1016/j.ejmech.2026.118591
Siyuan Tang , Jiangwen Gui , Yingjie Lan , Panwen Liu , Yuliang Lin , Meng Sun , Shaoliang Duan , Chao Zhang , Denggao Zhang , Min Liu , Xiaobo Mai , Jiaqi Tan , Zhiwen Wang , Jinggen Liu , Liming Shao , Wei Fu , Yujun Wang , Wei Li
4,5-Epoxymorphinan derivatives represent a privileged chemotype among opioid ligands, with well-established clinical utility, and continue to serve as a widely used scaffold for the development of novel opioid-like therapeutics. This work describes the design and synthesis of a series of N-cyclopropylmethyl-7α-(m-methylaminophenyl)-6,14-endoethano-northebaine derivatives and identifies compound 8a as a structurally optimized KOR agonist with high KOR affinity, pronounced MOR/KOR and DOR/KOR subtype selectivity, and marked G-protein bias. In vivo, compound 8a exhibited robust, dose-dependent antinociceptive activity in both the hot-plate and abdominal constriction assays, with ED50 values of 8.2 and 0.5 mg/kg, respectively. Nevertheless, the emergence of motor impairment and aversive effects at behaviorally relevant doses underscores a critical limitation of relying solely on cell-based G-protein bias as a predictor of improved central nervous system safety for KOR agonists.
4,5-环氧morphinan衍生物在阿片类配体中是一种特殊的化学型,具有良好的临床应用,并继续作为一种广泛使用的支架,用于开发新型阿片类药物。本研究设计和合成了一系列n -环丙基甲基-7α-(m-甲基氨基苯基)-6,14-内乙醇-北啡衍生物,并鉴定出化合物8a是一种结构优化的KOR激动剂,具有高KOR亲和力,明显的MOR/KOR和DOR/KOR亚型选择性,以及明显的g蛋白偏倚。在体内,化合物8a在热板和腹部收缩实验中均表现出强大的剂量依赖性抗伤感受活性,ED50值分别为8.2和0.5 mg/kg。然而,在行为相关剂量下出现的运动损伤和不良反应强调了仅依赖基于细胞的g蛋白偏差作为改善KOR激动剂中枢神经系统安全性的预测指标的关键局限性。
{"title":"Structure-activity relationship of N-cyclopropylmethyl-7α-(m-methylaminophenyl)-6,14-endoethano-northebaine derivatives as G-protein-biased KOR-selective agonists","authors":"Siyuan Tang ,&nbsp;Jiangwen Gui ,&nbsp;Yingjie Lan ,&nbsp;Panwen Liu ,&nbsp;Yuliang Lin ,&nbsp;Meng Sun ,&nbsp;Shaoliang Duan ,&nbsp;Chao Zhang ,&nbsp;Denggao Zhang ,&nbsp;Min Liu ,&nbsp;Xiaobo Mai ,&nbsp;Jiaqi Tan ,&nbsp;Zhiwen Wang ,&nbsp;Jinggen Liu ,&nbsp;Liming Shao ,&nbsp;Wei Fu ,&nbsp;Yujun Wang ,&nbsp;Wei Li","doi":"10.1016/j.ejmech.2026.118591","DOIUrl":"10.1016/j.ejmech.2026.118591","url":null,"abstract":"<div><div>4,5-Epoxymorphinan derivatives represent a privileged chemotype among opioid ligands, with well-established clinical utility, and continue to serve as a widely used scaffold for the development of novel opioid-like therapeutics. This work describes the design and synthesis of a series of <em>N</em>-cyclopropylmethyl-7α-(<em>m</em>-methylaminophenyl)-6,14-<em>endo</em>ethano-northebaine derivatives and identifies compound <strong>8a</strong> as a structurally optimized KOR agonist with high KOR affinity, pronounced MOR/KOR and DOR/KOR subtype selectivity, and marked G-protein bias. <em>In vivo</em>, compound <strong>8a</strong> exhibited robust, dose-dependent antinociceptive activity in both the hot-plate and abdominal constriction assays, with ED<sub>50</sub> values of 8.2 and 0.5 mg/kg, respectively. Nevertheless, the emergence of motor impairment and aversive effects at behaviorally relevant doses underscores a critical limitation of relying solely on cell-based G-protein bias as a predictor of improved central nervous system safety for KOR agonists.</div></div>","PeriodicalId":314,"journal":{"name":"European Journal of Medicinal Chemistry","volume":"306 ","pages":"Article 118591"},"PeriodicalIF":5.9,"publicationDate":"2026-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145995782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
European Journal of Medicinal Chemistry
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1