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Validating the pathogenic mechanism of chronic obstructive pulmonary disease induced by negative emotions via Mendelian randomization and traditional Chinese medicine theory of emotions 通过孟德尔随机化和中医情绪理论验证负性情绪诱发慢性阻塞性肺疾病的致病机制
Q3 Medicine Pub Date : 2025-06-01 DOI: 10.1016/j.dcmed.2025.05.003
Zhiying Wang , Yun Li , Zhixian Zhong , Ling Xu , Yi Zhong , Jian Chen

Objective

We employed Mendelian randomization (MR) to test the traditional Chinese medicine (TCM) theory of emotional pathogenesis concept and explore the causal relationship between negative emotions and chronic obstructive pulmonary disease (COPD).

Methods

Data of negative emotions, bronchitis, emphysema, and C-reactive protein (CRP) levels were downloaded from genome-wide association study (GWAS) public database for a two-sample MR analysis. Independent single-nucleotide polymorphisms (SNPs) associated with negative emotions, bronchitis, and emphysema were selected as instrumental variables. Primary causal estimates were derived using inverse-variance weighting (IVW), supplemented by weighted median (WM), and simple mode (SM) methods. Sensitivity analyses included MR-Egger regression and MR-PRESSO to assess pleiotropy, Cochran’s Q test for heterogeneity, and multivariate MR to adjust for smoking. Mediation analysis evaluated the role of inflammatory markers. Reverse MR was tested for bidirectional causality. Weak instrument bias was mitigated via F-statistic thresholds (> 10). All analyses were conducted in RStudio.

Results

MR analysis identified significant causal effects of several negative emotions on COPD. Genetically, the IVW analysis of seen doctors for nerves anxiety tension or depression [ORIVW = 1.006, 95% CI = (1.002, 1.010), P = 0.002], sensitivity/hurt feelings [ORIVW = 1.024, 95% CI = (1.004, 1.044), P = 0.017], and irritability [ORIVW = 1.019, 95% CI = (1.003, 1.035), P = 0.019 were robustly associated with increased risks of COPD. No heterogeneity was detected among the different instrumental variables (IVs) for depression (P = 0.655) and irritability (P = 0.163). MR-Egger regression intercepts for all emotional exposures were close to zero and statistically non-significant, indicating no evidence of directional pleiotropy. The horizontal pleiotropy results showed that except for worry (MR-PRESSO P = 0.006), other emotion exposures confirming no substantial pleiotropic bias. Multivariable MR demonstrated that anxiety remained independently associated with COPD after adjusting for smoking (P = 0.002), while associations with other negative emotions were attenuated post-adjustment. The mediation analysis revealed that CRP mediated 3.93% of the total effect of anxiety on COPD. However, reverse MR analysis found no evidence of reverse causality.

Conclusion

This study confirmed the causal effects of negative emotions on COPD through MR analysis and revealed that negative emotions may trigger CRP production, which plays an essential mediating role in this relationship. This study provides a reliable modern theoretical basis for emotion theory in TCM.
目的采用孟德尔随机化(MR)方法检验中医理论的情绪病机概念,探讨负性情绪与慢性阻塞性肺疾病(COPD)的因果关系。方法从全基因组关联研究(GWAS)公共数据库下载患者的负性情绪、支气管炎、肺气肿和c反应蛋白(CRP)水平数据,进行两样本MR分析。与负面情绪、支气管炎和肺气肿相关的独立单核苷酸多态性(snp)被选为工具变量。主要因果估计使用反方差加权(IVW),辅以加权中位数(WM)和简单模式(SM)方法。敏感性分析包括评估多效性的MR- egger回归和MR- presso,异质性的Cochran 's Q检验,以及调整吸烟因素的多变量MR。中介分析评估炎症标志物的作用。反向MR检验双向因果关系。通过f统计阈值(>;10)。所有分析均在RStudio中进行。结果smr分析发现几种负面情绪对COPD有显著的因果关系。从遗传学角度看,就诊医生对神经焦虑、紧张或抑郁的IVW分析[ORIVW = 1.006, 95% CI = (1.002, 1.010), P = 0.002]、敏感/受伤感[ORIVW = 1.024, 95% CI = (1.004, 1.044), P = 0.017]和易怒[ORIVW = 1.019, 95% CI = (1.003, 1.035), P = 0.019]与COPD风险增加显著相关。不同工具变量(IVs)对抑郁(P = 0.655)和烦躁(P = 0.163)的影响不存在异质性。所有情绪暴露的MR-Egger回归截距接近于零,在统计上不显著,表明没有方向性多效性的证据。水平多效性结果显示,除了担忧(MR-PRESSO P = 0.006)外,其他情绪暴露证实没有明显的多效性偏差。多变量MR显示,在调整吸烟因素后,焦虑仍与COPD独立相关(P = 0.002),而与其他负面情绪的关联在调整后减弱。中介分析显示,CRP介导焦虑对COPD总影响的3.93%。然而,反向磁共振分析没有发现反向因果关系的证据。结论本研究通过MR分析证实了消极情绪与COPD的因果关系,揭示了消极情绪可能触发CRP的产生,而CRP在这一关系中起着重要的中介作用。本研究为中医情感理论提供了可靠的现代理论基础。
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引用次数: 0
TCMHTI: a Transformer-based herb-target interaction prediction model for Qingfu Juanbi Decoction in rheumatoid arthritis 基于transformer的清附蠲痹汤治疗类风湿关节炎的中草药-靶点相互作用预测模型
Q3 Medicine Pub Date : 2025-06-01 DOI: 10.1016/j.dcmed.2025.05.007
Zhenzhong Liang , Changsong Ding

Objective

To predict the potential targets of Qingfu Juanbi Decoction (青附蠲痹汤, QFJBD) in treating rheumatoid arthritis (RA) using an improved Transformer model and investigate the network pharmacological mechanisms underlying QFJBD’s therapeutic effects on RA.

Methods

First, a traditional Chinese medicine herb-target interaction (TCMHTI) model was constructed to predict herb-target interactions based on Transformer improvement. The performance of the TCMHTI model was evaluated against baseline models using three metrics: area under the receiver operating characteristic curve (AUC), precision-recall curve (PRC), and accuracy. Subsequently, a protein-protein interaction (PPI) network was built based on the predicted targets, with core targets identified as the top nine nodes ranked by degree values. Gene Ontology (GO) functional and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed using the targets predicted by TCMHTI and the targets identified through network pharmacology method for comparison. Then, the results were compared. Finally, the core targets predicted by TCMHTI were validated through molecular docking and literature review.

Results

The TCMHTI model achieved an AUC of 0.883, PRC of 0.849, and accuracy of 0.818, predicting 49 potential targets for QFJBD in RA treatment. Nine core targets were identified: tumor necrosis factor (TNF)-α, interleukin (IL)-1β, IL-6, IL-10, IL-17A, cluster of differentiation 40 (CD40), cytotoxic T-lymphocyte-associated protein 4 (CTLA4), IL-4, and signal transducer and activator of transcription 3 (STAT3). The enrichment analysis demonstrated that the TCMHTI model predicted 49 targets and enriched more pathways directly associated with RA, whereas classical network pharmacology identified 64 targets but enriched pathways showing weaker relevance to RA. Molecular docking demonstrated that the active molecules in QFJBD exhibit favorable binding energy with RA targets, while literature research further revealed that QFJBD can treat RA through 9 core targets.

Conclusion

The TCMHTI model demonstrated greater accuracy than traditional network pharmacology methods, suggesting QFJBD exerts therapeutic effects on RA by regulating targets like TNF-α, IL-1β, and IL-6, as well as multiple signaling pathways. This study provides a novel framework for bridging traditional herbal knowledge with precision medicine, offering actionable insights for developing targeted TCM therapies against diseases.
目的应用改进的Transformer模型预测清附蠲痹汤治疗类风湿关节炎(RA)的潜在靶点,探讨清附蠲痹汤治疗RA的网络药理机制。方法首先,建立基于Transformer改进的中药-靶点相互作用(TCMHTI)模型,预测中药-靶点相互作用。TCMHTI模型的性能通过三个指标进行基线模型的评估:接收者工作特征曲线下面积(AUC)、精密度-召回率曲线(PRC)和准确度。随后,基于预测的靶点构建蛋白-蛋白相互作用(PPI)网络,将核心靶点按度值排序为前9个节点。利用TCMHTI预测的靶点与通过网络药理学方法鉴定的靶点进行比较,进行基因本体(GO)功能分析和京都基因基因组百科全书(KEGG)途径富集分析。然后,对结果进行比较。最后,通过分子对接和文献查阅对TCMHTI预测的核心靶点进行验证。结果TCMHTI模型的AUC为0.883,PRC为0.849,准确率为0.818,预测了QFJBD治疗RA的49个潜在靶点。鉴定出9个核心靶点:肿瘤坏死因子(TNF)-α、白细胞介素(IL)-1β、IL-6、IL-10、IL- 17a、分化簇蛋白40 (CD40)、细胞毒性t淋巴细胞相关蛋白4 (CTLA4)、IL-4和转录信号传导和激活因子3 (STAT3)。富集分析表明,TCMHTI模型预测了49个靶点,富集了更多与RA直接相关的通路,而经典网络药理学模型识别了64个靶点,富集了与RA相关性较弱的通路。分子对接表明QFJBD中的活性分子与RA靶点具有良好的结合能,而文献研究进一步揭示QFJBD可通过9个核心靶点治疗RA。结论TCMHTI模型比传统网络药理学方法具有更高的准确性,提示QFJBD通过调节TNF-α、IL-1β、IL-6等靶点及多种信号通路发挥治疗RA的作用。这项研究为传统草药知识与精准医学之间的桥梁提供了一个新的框架,为开发针对疾病的靶向中医疗法提供了可行的见解。
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引用次数: 0
Development and validation of a quality appraisal tool for case reports in traditional Chinese medicine using the Delphi method 基于德尔菲法的中医病例报告质量评价工具的开发与验证
Q3 Medicine Pub Date : 2025-06-01 DOI: 10.1016/j.dcmed.2025.05.004
Duoting Tan , Hao Liang , Yipin Yu , Jin Guo , Liqin Zhong , Zhixi Hu

Objective

To develop a quality appraisal tool for case reports in traditional Chinese medicine (TCM) based on their characteristics.

Methods

An extensive literature search was conducted in Chinese Biomedical Literature Database (CBM), China National Knowledge Infrastructure (CNKI), and China Science and Technology Journal Database (CSTJ), focusing on expert consensus statements and checklists for TCM case reports. Relevant items were extracted, and a Delphi method involving 34 experts was used in two rounds to rate each item on a 5-point Likert scale. Items were screened based on measures of central tendency and coordination (including total score, mean score, percentage of items rated as unimportant, and coefficient of variation). The weighted average method was used to determine item weights and construct the appraisal tool. Internal consistency was assessed using Cronbach’s α coefficient. The finalized tool was pilot-tested by two reviewers independently appraising 20 case reports, with an additional four reviewers evaluating 5 of these cases to compare inter-rater consistency.

Results

A total of 9 513 articles were retrieved, and 96 items from 25 articles were extracted. After two rounds of the Delphi method, 27 items across 10 domains were retained. The Cronbach’s α coefficient was 0.72 in the first round (acceptable range), and 0.96 in the second round, indicating strong internal consistency. The tool was piloted by six reviewers, achieving a kappa value of 0.663 and a Kendall’s coefficient of concordance of 0.845, demonstrating high consistency among reviewers.

Conclusion

The developed TCM case report quality appraisal tool, consisting of 27 items in 10 domains, offers a scientific and reliable means of assessing the quality of TCM case reports. The tool showed high consistency and practical utility, and its application is expected to enhance the standardization, scientific rigor, and evidence quality of TCM case reports, facilitating the integration of traditional medical knowledge with modern evidence-based standards.
目的根据中医病例报告的特点,建立中医病例报告质量评价工具。方法在中国生物医学文献数据库(CBM)、中国知网(CNKI)和中国科技期刊数据库(CSTJ)中进行广泛的文献检索,重点检索专家共识声明和中医病例报告清单。提取相关项目,采用34位专家参与的德尔菲法,分两轮对每个项目进行5分李克特评分。根据集中趋势和协调(包括总分、平均分、被评为不重要的项目百分比和变异系数)的措施筛选项目。采用加权平均法确定项目权重,构建评价工具。采用Cronbach’s α系数评价内部一致性。最终确定的工具由两名审稿人进行了试点测试,他们独立评估了20个案例报告,另外四名审稿人评估了其中的5个案例,以比较审稿人之间的一致性。结果共检索文献9 513篇,从25篇文献中提取96项。经过两轮德尔菲法,10个领域的27个项目被保留下来。第一轮Cronbach 's α系数为0.72(可接受范围),第二轮为0.96,表明内部一致性强。该工具由6位审稿人进行了试点,kappa值为0.663,Kendall的一致性系数为0.845,表明审稿人之间的一致性很高。结论所开发的中医病例报告质量评价工具包含10个领域27个项目,为中医病例报告质量评价提供了科学可靠的手段。该工具具有较高的一致性和实用性,其应用有望提高中医病例报告的标准化、科学严谨性和证据质量,促进传统医学知识与现代循证标准的融合。
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引用次数: 0
Evaluating the in vitro anti-diabetic activity of Bryonia dioica root extracts supported by molecular docking analysis 基于分子对接分析的薯蓣根提取物体外抗糖尿病活性评价
Q3 Medicine Pub Date : 2025-06-01 DOI: 10.1016/j.dcmed.2025.05.008
Fekhikher Zohra , Benariba Nabila , Radia Brixi Gormat , Hassain Reda , Abdelli Imen , Z. Sekkal Fatima , Kachekouche Youssouf , Taibi Warda , Brikci Sohayb Bekkal , Terki Mohammed , Benramdane Hanane , Adjdir Sara

Objective

To evaluate the in vitro anti-diabetic effects of Bryonia dioica roots extracts, including water-acetone extracts and their ethyl acetate and butanol fractions, and chloroform-methanol extracts.

Methods

The total phenolic, flavonoid, flavonol, and saponin contents in the Bryonia dioica root extracts (chloroform-methanol extracts, water-acetone extracts and their ethyl acetate and butanol fractions) were determined using colorimetric methods with Folin-Ciocalteu, aluminum trichloride, and vanillin reagents, respectively. The in vitro anti-diabetic activity was evaluated by measuring the half-maximal inhibitory concentration (IC50) values of these root extracts against α-amylase and α-glucosidase activities, evaluating their effects on α-amylase kinetics, quantifying the inhibition of bovine serum albumin (BSA) glycation using fluorometry to assess advanced glycation end products (AGE) production, and determining glucose uptake by isolated rat hemidiaphragm. Additionally, molecular docking analysis was conducted to investigate the binding affinity and interaction types between Bryonia dioica ligands (cucurbitacin B, bryogénin, vitexin, and isovitexin) and target enzymes, and a phytochemical-targets interaction network was constructed.

Results

For α-amylase inhibition, ethyl acetate fraction demonstrated the most potent activity (IC50 = 145.95 μg/mL), followed by chloroform-methanol extract (IC50 = 300.86 μg/mL). Water-acetone root extracts and their ethyl acetate and butanol fractions inhibited the α-glucosidase activity with IC50 values ranging from 562.88 to 583.90 μg/mL. Both ethyl acetate and butanol fractions strongly inhibited non-enzymatic BSA glycation (IC50 = 318.26 and 323.12 μg/mL, respectively). The incubation of isolated rat hemidiaphragms with the ethyl acetate fraction (5 mg/mL) significantly increased glucose uptake (35.16%; P < 0.0001), exceeding the effects of insulin (29.27%), chloroform-methanol extract (24.07%), and catechin (15.27%). Molecular docking revealed that cucurbitacin B exhibited the strongest docking scores against α-amylase (– 16.4 kcal/mol), and α-glucosidase (– 14.2 kcal/mol). Compared with other ligands, isovitexin formed the maximum number of hydrogen bonds with the α-amylase active site residues (Asp300, Asp197, and Glu233), α-glucosidase residues (Ser13, Arg44, Met86, Gly10, Asp39, and Tyr131) and other residues (Arg195, Trp59, His299, and Tyr62). Network analysis identified 36 overlapping targets between Bryonia dioica phytochemicals and type 2 diabetes mellitus-associated genes, with cucurbitacins and polyphenols interacting with α-amylase, α-glucosidase, and Glut4 translocation pathway targets.

Conclusion

Bryonia dioica root extracts demonstrated promising in vitro
目的评价薯蓣根提取物的体外抗糖尿病作用,包括水丙酮提取物及其乙酸乙酯和丁醇组分,以及氯仿-甲醇提取物。方法采用比色法,分别用福林-乙醇试剂、三氯化铝试剂和香兰素试剂测定薯蓣根提取物(氯仿-甲醇提取物、水-丙酮提取物及其乙酸乙酯和丁醇组分)中总酚、类黄酮、黄酮醇和皂苷的含量。通过测定这些根提取物对α-淀粉酶和α-葡萄糖苷酶活性的半最大抑制浓度(IC50)值,评价其对α-淀粉酶动力学的影响,用荧光法定量测定牛血清白蛋白(BSA)糖基化的抑制作用以评估晚期糖基化终产物(AGE)的产生,并测定离体大鼠半横肌的葡萄糖摄取,来评估其体外抗糖尿病活性。此外,通过分子对接分析,研究了薯蓣配体(葫芦素B、豆芽胞苷、牡荆素和异牡荆素)与靶酶的结合亲和力和相互作用类型,构建了植物化学-靶点相互作用网络。结果乙酸乙酯部位对α-淀粉酶的抑制作用最强(IC50 = 145.95 μg/mL),氯仿甲醇部位次之(IC50 = 300.86 μg/mL)。水丙酮根提取物及其乙酸乙酯和丁醇组分抑制α-葡萄糖苷酶活性,IC50值为562.88 ~ 583.90 μg/mL。乙酸乙酯和丁醇组分均能显著抑制非酶促BSA糖基化(IC50分别为318.26和323.12 μg/mL)。乙酸乙酯部分(5 mg/mL)孵育离体大鼠半膈,显著增加葡萄糖摄取(35.16%;P & lt;0.0001),超过胰岛素(29.27%)、氯仿甲醇提取物(24.07%)和儿茶素(15.27%)的效果。分子对接结果表明,葫芦素B对α-淀粉酶(- 16.4 kcal/mol)和α-葡萄糖苷酶(- 14.2 kcal/mol)的对接得分最高。与其他配体相比,异vitexin与α-淀粉酶活性位点残基(Asp300、Asp197、Glu233)、α-葡萄糖苷酶残基(Ser13、Arg44、Met86、Gly10、Asp39、Tyr131)和其他残基(Arg195、Trp59、His299、Tyr62)形成的氢键数最多。网络分析发现,薯蓣植物化学物质与2型糖尿病相关基因之间存在36个重叠靶点,葫芦素和多酚类物质与α-淀粉酶、α-葡萄糖苷酶和Glut4易位途径靶点相互作用。结论薯蓣根提取物具有良好的体外抗糖尿病活性,其机制包括对消化酶的抑制作用、对蛋白质的抗糖基化作用、对葡萄糖摄取的增强作用等,具有开发抗糖尿病药物的潜力。
{"title":"Evaluating the in vitro anti-diabetic activity of Bryonia dioica root extracts supported by molecular docking analysis","authors":"Fekhikher Zohra ,&nbsp;Benariba Nabila ,&nbsp;Radia Brixi Gormat ,&nbsp;Hassain Reda ,&nbsp;Abdelli Imen ,&nbsp;Z. Sekkal Fatima ,&nbsp;Kachekouche Youssouf ,&nbsp;Taibi Warda ,&nbsp;Brikci Sohayb Bekkal ,&nbsp;Terki Mohammed ,&nbsp;Benramdane Hanane ,&nbsp;Adjdir Sara","doi":"10.1016/j.dcmed.2025.05.008","DOIUrl":"10.1016/j.dcmed.2025.05.008","url":null,"abstract":"<div><h3>Objective</h3><div>To evaluate the <em>in vitro</em> anti-diabetic effects of <em>Bryonia dioica</em> roots extracts, including water-acetone extracts and their ethyl acetate and butanol fractions, and chloroform-methanol extracts.</div></div><div><h3>Methods</h3><div>The total phenolic, flavonoid, flavonol, and saponin contents in the <em>Bryonia dioica</em> root extracts (chloroform-methanol extracts, water-acetone extracts and their ethyl acetate and butanol fractions) were determined using colorimetric methods with Folin-Ciocalteu, aluminum trichloride, and vanillin reagents, respectively. The <em>in vitro</em> anti-diabetic activity was evaluated by measuring the half-maximal inhibitory concentration (IC<sub>50</sub>) values of these root extracts against α-amylase and α-glucosidase activities, evaluating their effects on α-amylase kinetics, quantifying the inhibition of bovine serum albumin (BSA) glycation using fluorometry to assess advanced glycation end products (AGE) production, and determining glucose uptake by isolated rat hemidiaphragm. Additionally, molecular docking analysis was conducted to investigate the binding affinity and interaction types between <em>Bryonia dioica</em> ligands (cucurbitacin B, bryogénin, vitexin, and isovitexin) and target enzymes, and a phytochemical-targets interaction network was constructed.</div></div><div><h3>Results</h3><div>For α-amylase inhibition, ethyl acetate fraction demonstrated the most potent activity (IC<sub>50</sub> = 145.95 μg/mL), followed by chloroform-methanol extract (IC<sub>50</sub> = 300.86 μg/mL). Water-acetone root extracts and their ethyl acetate and butanol fractions inhibited the α-glucosidase activity with IC<sub>50</sub> values ranging from 562.88 to 583.90 μg/mL. Both ethyl acetate and butanol fractions strongly inhibited non-enzymatic BSA glycation (IC<sub>50</sub> = 318.26 and 323.12 μg/mL, respectively). The incubation of isolated rat hemidiaphragms with the ethyl acetate fraction (5 mg/mL) significantly increased glucose uptake (35.16%; <em>P</em> &lt; 0.0001), exceeding the effects of insulin (29.27%), chloroform-methanol extract (24.07%), and catechin (15.27%). Molecular docking revealed that cucurbitacin B exhibited the strongest docking scores against α-amylase (– 16.4 kcal/mol), and α-glucosidase (– 14.2 kcal/mol). Compared with other ligands, isovitexin formed the maximum number of hydrogen bonds with the α-amylase active site residues (Asp300, Asp197, and Glu233), α-glucosidase residues (Ser13, Arg44, Met86, Gly10, Asp39, and Tyr131) and other residues (Arg195, Trp59, His299, and Tyr62). Network analysis identified 36 overlapping targets between Bryonia dioica phytochemicals and type 2 diabetes mellitus-associated genes, with cucurbitacins and polyphenols interacting with α-amylase, α-glucosidase, and Glut4 translocation pathway targets.</div></div><div><h3>Conclusion</h3><div><em>Bryonia dioica</em> root extracts demonstrated promising <em>in vitro</em> ","PeriodicalId":33578,"journal":{"name":"Digital Chinese Medicine","volume":"8 2","pages":"Pages 219-233"},"PeriodicalIF":0.0,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144772473","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development and validation of a nomogram model for predicting the risk of H-type hypertension with pulse diagram parameters 利用脉搏图参数预测h型高血压风险的nomogram模型的建立与验证
Q3 Medicine Pub Date : 2025-06-01 DOI: 10.1016/j.dcmed.2025.05.006
Siman WANG, Mengchu ZHANG, Minghui YAO, Tianxiao XIE, Rui GUO, Yiqin WANG, Haixia YAN

Objective

To develop an onset risk prediction nomogram for patients with homocysteine-type (H-type) hypertension (HTH) based on pulse diagram parameters to assist early clinical prediction and diagnosis of HTH.

Methods

Patients diagnosed with essential hypertension and admitted to Shanghai Shuguang Hospital Affiliated to Shanghai University of Traditional Chinese Medicine, Shanghai Hospital of Traditional Chinese Medicine, and Shanghai Hospital of Integrated Traditional Chinese and Western Medicine from July 6th 2020 to June 16th 2021, and from August 11th 2023 to January 22nd 2024, were enrolled in this retrospective research. The baselines and clinical biochemical indicators of patients were collected. The SMART-I TCM pulse instrument was applied to gather pulse diagram parameters. Multivariate logistic regression was adopted to analyze the risk factors for HTH. RStudio was employed to construct the nomogram model, receiver operating characteristic (ROC) curve, and calibration curve (bootstrap self-sampling 200 times), and clinical decision curve were drawn to evaluate the model’s discrimination and clinical effectiveness.

Results

A total of 168 hospitalized patients with essential hypertension were selected and divided into non-HTH group (n = 29) and HTH group (n = 139). Compared with non-HTH group, HTH group had a lower body mass index (BMI), and higher proportions of male patients and drinkers (P < 0.05). The ventricular wall thickening (VWT) could not be determined. The proportions of left common carotid intima-media wall thickness (LCCIMWT) and serum creatinine (SCR) were higher in HTH group (P < 0.05). The pulse diagram parameter As was significantly higher, and H4/H1 and T1/T were lower in HTH group (P < 0.05). Gender, alcohol consumption, serum creatinine, and the pulse diagram parameter H4/H1 were identified as independent risk factors for HTH (P < 0.05). The nomogram’s area under the ROC curve (AUC) was 0.795 [95% confidence interval (CI): (0.706 6, 0.882 8)], with a specificity of 0.724 and sensitivity of 0.799. After 200 times repeated bootstrap self-samplings, the calibration curve showed that the simulated curve fits well with the actual curve (x2 = <styled-content style-type="number">9.5002</styled-content>, P = 0.301 9). The clinical decision curve indicated that the nomogram’s applicability was optimal when the threshold for predicting HTH was between 0.38 and 1.00.

Conclusion

The nomogram model could be valuable for predicting the onset risk of HTH and pulse diagram parameters can facilitate early screening and prevention of HTH.
目的建立基于脉图参数的同型半胱氨酸型(h型)高血压(HTH)发病风险预测图,以辅助HTH的早期临床预测和诊断。方法选取2020年7月6日至2021年6月16日、2023年8月11日至2024年1月22日在上海中医药大学附属上海曙光医院、上海中医医院和上海中西医结合医院就诊的原发性高血压患者进行回顾性研究。收集患者基线及临床生化指标。采用SMART-I型中医脉象仪采集脉图参数。采用多因素logistic回归分析HTH的危险因素。采用RStudio构建nomogram模型、receiver operating characteristic (ROC)曲线、校正曲线(bootstrap自采样200次),绘制临床决策曲线,评价模型的辨别力和临床有效性。结果168例住院原发性高血压患者分为非HTH组(n = 29)和HTH组(n = 139)。与非HTH组相比,HTH组体重指数(BMI)较低,男性患者和饮酒者比例较高(P <;0.05)。心室壁增厚(VWT)不能确定。HTH组左颈总动脉内膜-中壁厚度(LCCIMWT)和血清肌酐(SCR)比例较高(P <;0.05)。HTH组脉搏图参数As明显升高,H4/H1和T1/T明显降低(P <;0.05)。性别、饮酒、血清肌酐和脉搏图参数H4/H1被确定为HTH的独立危险因素(P <;0.05)。ROC曲线下的nomogram’s area under ROC curve (AUC)为0.795[95%可信区间(CI): 0.7066, 0.882 8],特异性为0.724,敏感性为0.799。经过200次重复自采样,校准曲线显示模拟曲线与实际曲线拟合良好(x2 = <styled-content style-type="number">9.5002</ styles -content>, P = 0.301 9)。临床决策曲线显示,当预测HTH的阈值在0.38 ~ 1.00之间时,nomogram适用性最佳。结论该模型可用于预测HTH的发病风险,脉搏图参数可促进HTH的早期筛查和预防。
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引用次数: 0
Unveiling the digital renaissance of traditional Chinese medicine: a leap towards holistic healthcare and precision medicine 揭开中医数字化复兴的面纱:迈向整体医疗和精准医疗的飞跃
Q3 Medicine Pub Date : 2025-03-01 DOI: 10.1016/j.dcmed.2025.04.001
Lingyu Linda Ye , Qinghua Peng , Dayue Darrel Duan
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引用次数: 0
Modulation of colonic DNA methyltransferase by mild moxibustion and electroacupuncture in ulcerative colitis TET2 knockout mice 微灸和电针对溃疡性结肠炎TET2基因敲除小鼠结肠DNA甲基转移酶的调节作用
Q3 Medicine Pub Date : 2025-03-01 DOI: 10.1016/j.dcmed.2025.03.009
Gege Feng , Yue Zhang , Huangan Wu , Lu Zhu , Hongxiao Xu , Zhe Ma , Yan Huang
<div><h3>Objective</h3><div>To investigate the mechanism of in alleviating colonic mucosal inflammation in ten-eleven translocation (TET) protein 2 gene knockout (<em>TET2</em><sup><em>-/-</em></sup>) mice with ulcerative colitis (UC) by regulating DNA methyltransferase (DNMT) and DNA hydroxymethylase.</div></div><div><h3>Methods</h3><div>Male specific pathogen-free (SPF) grade C57BL/6J wild-type (WT) mice (<em>n</em> = 8) and <em>TET2</em><sup>-/-</sup> mice (<em>n</em> = 20) were used to establish UC models by freely drinking 3% dextran sulfate sodium solution for 7 d. After UC model validation through histopathological examination in two mice from each type, the remaining mice were divided into four groups (<em>n</em> = 6 in each group): WT model (WT + UC), <em>TET2</em><sup>-/-</sup> model (<em>TET2</em><sup>-/-</sup> + UC), <em>TET2</em><sup>-/-</sup> mild moxibustion (<em>TET2</em><sup>-/-</sup> + MM), and <em>TET2</em><sup>-/-</sup> electroacupuncture (<em>TET2</em><sup>-/-</sup> + EA) groups. <em>TET2</em><sup>-/-</sup> + MM group received mild moxibustion on Tianshu (ST25) and Qihai (CV6) for 10 min daily for 7 d. The <em>TET2</em><sup>-/-</sup> + EA group also applied electroacupuncture (1 mA, 2/100 Hz) at the same acupoints for 10 min daily for 7 d. The disease activity index (DAI) scores of each group of mice were accessed daily. The colon lengths of mice in groups were measured following intervention. The pathological changes in the colon tissues were observed with hematoxylin and eosin (HE) staining. The concentrations of interleukin (IL)-6, C-C motif chemokine 17 (CCL17), and C-X-C motif chemokine ligand 10 (CXCL10) in serum were detected by enzyme-linked immunosorbent assay (ELISA). The expression of DNMT proteins (DNMT1, DNMT3A, and DNMT3B) in the colon tissues was detected by immunohistochemistry. The expression of 5-methylcytosine (5-mC), 5-hydroxymethylcytosine (5-hmC), histone deacetylase 2 (HDAC2), and DNA hydroxymethylase family proteins (TET 1 and TET3) was detected using immunofluorescence, which also determined the co-localization of TET1 and IL-6 protein.</div></div><div><h3>Results</h3><div>Compared with WT + UC group, <em>TET2</em><sup>-/-</sup> + UC group exhibited significantly higher DAI scores and shorter colon lengths (<em>P</em> < 0.01). Both mild moxibustion and electroacupuncture significantly decreased DAI scores and ameliorated colon shortening in <em>TET2</em><sup>-/-</sup> mice (<em>P</em> < 0.001). Histopathological scores of <em>TET2</em><sup>-/-</sup> + UC mice were significantly higher than those of WT + UC group (<em>P</em> < 0.001) and were significantly reduced after both mild moxibustion and electroacupuncture interventions (<em>P</em> < 0.001). Serum levels of IL-6, CCL17, and CXCL10 were significantly elevated in <em>TET2</em><sup>-/-</sup> + UC group compared with WT + UC group (<em>P</em> < 0.001). Mild moxibustion significantly reduced IL-6, CCL17, and CXCL10 levels (<em>P</em>
目的探讨通过调节DNA甲基转移酶(DNMT)和DNA羟甲基化酶,减轻10 - 11易位(TET)蛋白2基因敲除(TET2-/-)小鼠溃疡性结肠炎(UC)结肠黏膜炎症的机制。方法采用SPF级C57BL/6J野生型(WT)小鼠(n = 8)和TET2-/-型小鼠(n = 20)分别自由灌胃3%葡聚糖硫酸钠溶液7 d建立UC模型,每型2只经组织病理学检查验证UC模型后,将剩余小鼠分为4组(每组6只):WT模型(WT + UC)、TET2-/-模型(TET2-/- + UC)、TET2-/-轻度灸(TET2-/- + MM)、TET2-/-电针(TET2-/- + EA)组。TET2-/- + MM组给予天俞穴(ST25)和七海穴(CV6)轻灸,每日10 min,连用7 d。TET2-/- + EA组同时在同一穴位电针(1 mA, 2/100 Hz),每日10 min,连用7 d。每日获取各组小鼠疾病活动指数(DAI)评分。干预后测量各组小鼠结肠长度。苏木精、伊红(HE)染色观察结肠组织病理变化。采用酶联免疫吸附法(ELISA)检测血清中白细胞介素(IL)-6、C-C基序趋化因子17 (CCL17)和C-X-C基序趋化因子配体10 (CXCL10)的浓度。免疫组化检测结肠组织中DNMT蛋白(DNMT1、DNMT3A、DNMT3B)的表达。免疫荧光法检测5-甲基胞嘧啶(5-mC)、5-羟甲基胞嘧啶(5-hmC)、组蛋白去乙酰化酶2 (HDAC2)和DNA羟甲基化酶家族蛋白(TET 1和TET3)的表达,并测定TET1和IL-6蛋白的共定位。结果与WT + UC组比较,TET2-/- + UC组DAI评分显著升高,结肠长度显著缩短(P <;0.01)。轻度艾灸和电针均可显著降低TET2-/-小鼠DAI评分,改善结肠缩短(P <;0.001)。TET2-/- + UC小鼠的组织病理学评分显著高于WT + UC组(P <;0.001),轻度艾灸和电针干预后显著降低(P <;0.001)。与WT + UC组相比,TET2-/- + UC组血清IL-6、CCL17、CXCL10水平显著升高(P <;0.001)。轻度艾灸可显著降低IL-6、CCL17、CXCL10水平(P <;0.001, P <;0.001, P <;0.01),而电针也显著降低IL-6、CCL17和CXCL10水平(P <;0.05, P <;0.01, P <;分别为0.01)。TET2-/- + UC小鼠DNMT1、DNMT3A、DNMT3B和5-mC的表达水平升高(P <;0.05, P <;0.01和P <;0.001), TET1、TET3、5-hmC和HDAC2的表达水平降低(P <;0.001)。轻度艾灸可显著降低DNMT1、DNMT3B和5-mC水平(P <;0.05, P <;0.01, P <;0.001),同时增加TET1、TET3、5-hmC和HDAC2的表达水平(P <;0.001, P <;0.001, P <;0.05, P <;分别为0.001)。电针显著降低5-mC和DNMT3B水平(P <;0.001和P <;5-hmC和HDAC2水平升高(P <;0.05和P <;0.001),但对TET1和TET3表达无显著影响(P >;0.05)。与TET2-/- + MM组比较,TET2-/- + EA组5-mC表达显著升高(P <;0.001)。TET2-/- + UC组IL-6表达明显增加,粘膜上皮中TET1和IL-6的共定位较高,而其他组IL-6表达较低。结论微灸和电针可通过表观遗传机制改善UC小鼠TET2缺乏所致的结肠炎症。两种干预之间存在不同的机制:轻度艾灸调节DNMT和羟甲基化酶,而电针主要影响DNMT。
{"title":"Modulation of colonic DNA methyltransferase by mild moxibustion and electroacupuncture in ulcerative colitis TET2 knockout mice","authors":"Gege Feng ,&nbsp;Yue Zhang ,&nbsp;Huangan Wu ,&nbsp;Lu Zhu ,&nbsp;Hongxiao Xu ,&nbsp;Zhe Ma ,&nbsp;Yan Huang","doi":"10.1016/j.dcmed.2025.03.009","DOIUrl":"10.1016/j.dcmed.2025.03.009","url":null,"abstract":"&lt;div&gt;&lt;h3&gt;Objective&lt;/h3&gt;&lt;div&gt;To investigate the mechanism of in alleviating colonic mucosal inflammation in ten-eleven translocation (TET) protein 2 gene knockout (&lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;&lt;em&gt;-/-&lt;/em&gt;&lt;/sup&gt;) mice with ulcerative colitis (UC) by regulating DNA methyltransferase (DNMT) and DNA hydroxymethylase.&lt;/div&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Methods&lt;/h3&gt;&lt;div&gt;Male specific pathogen-free (SPF) grade C57BL/6J wild-type (WT) mice (&lt;em&gt;n&lt;/em&gt; = 8) and &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; mice (&lt;em&gt;n&lt;/em&gt; = 20) were used to establish UC models by freely drinking 3% dextran sulfate sodium solution for 7 d. After UC model validation through histopathological examination in two mice from each type, the remaining mice were divided into four groups (&lt;em&gt;n&lt;/em&gt; = 6 in each group): WT model (WT + UC), &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; model (&lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; + UC), &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; mild moxibustion (&lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; + MM), and &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; electroacupuncture (&lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; + EA) groups. &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; + MM group received mild moxibustion on Tianshu (ST25) and Qihai (CV6) for 10 min daily for 7 d. The &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; + EA group also applied electroacupuncture (1 mA, 2/100 Hz) at the same acupoints for 10 min daily for 7 d. The disease activity index (DAI) scores of each group of mice were accessed daily. The colon lengths of mice in groups were measured following intervention. The pathological changes in the colon tissues were observed with hematoxylin and eosin (HE) staining. The concentrations of interleukin (IL)-6, C-C motif chemokine 17 (CCL17), and C-X-C motif chemokine ligand 10 (CXCL10) in serum were detected by enzyme-linked immunosorbent assay (ELISA). The expression of DNMT proteins (DNMT1, DNMT3A, and DNMT3B) in the colon tissues was detected by immunohistochemistry. The expression of 5-methylcytosine (5-mC), 5-hydroxymethylcytosine (5-hmC), histone deacetylase 2 (HDAC2), and DNA hydroxymethylase family proteins (TET 1 and TET3) was detected using immunofluorescence, which also determined the co-localization of TET1 and IL-6 protein.&lt;/div&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Results&lt;/h3&gt;&lt;div&gt;Compared with WT + UC group, &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; + UC group exhibited significantly higher DAI scores and shorter colon lengths (&lt;em&gt;P&lt;/em&gt; &lt; 0.01). Both mild moxibustion and electroacupuncture significantly decreased DAI scores and ameliorated colon shortening in &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; mice (&lt;em&gt;P&lt;/em&gt; &lt; 0.001). Histopathological scores of &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; + UC mice were significantly higher than those of WT + UC group (&lt;em&gt;P&lt;/em&gt; &lt; 0.001) and were significantly reduced after both mild moxibustion and electroacupuncture interventions (&lt;em&gt;P&lt;/em&gt; &lt; 0.001). Serum levels of IL-6, CCL17, and CXCL10 were significantly elevated in &lt;em&gt;TET2&lt;/em&gt;&lt;sup&gt;-/-&lt;/sup&gt; + UC group compared with WT + UC group (&lt;em&gt;P&lt;/em&gt; &lt; 0.001). Mild moxibustion significantly reduced IL-6, CCL17, and CXCL10 levels (&lt;em&gt;P&lt;/em&gt; ","PeriodicalId":33578,"journal":{"name":"Digital Chinese Medicine","volume":"8 1","pages":"Pages 100-110"},"PeriodicalIF":0.0,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143936005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
External application of traditional Chinese medicine in combination with three-step analgesic ladder therapy for cancer-induced bone pain: a systematic review and meta-analysis 中药外敷联合三步阶梯镇痛治疗癌性骨痛的系统回顾与meta分析
Q3 Medicine Pub Date : 2025-03-01 DOI: 10.1016/j.dcmed.2025.03.006
Fei Wang , Guihua Lai , Fang Zhou , Duorui Nie , Xiongtao Cheng , Yue Wang , Jianxiong Cao

Objective

To systematically evaluate the overall efficacy of external application of traditional Chinese medicine (EA-TCM) in combination with oral three-step analgesic ladder therapy for patients suffering from cancer-induced bone pain (CIBP).

Methods

We conducted a literature search of randomized controlled trials on the combination of EA-TCM and three-step analgesic ladder therapy for CIBP across ten databases and two registration systems. It included four Chinese databases [Chinese Biomedical Literature Database (SinoMed), China National Knowledge Infrastructure (CNKI), Wanfang Database, and China Science and Technology Journal Database (VIP) ], six English databases (Scopus, Embase, Web of Science, PubMed, Cochrane Library, and OpenGrey), and two registration systems (Chinese Clinical Trial Registry and ClinicalTrials.gov). The timeframe for the literature search extended from the inception of each database to December 31, 2023. Meta-analysis was performed using RevMan (v5.4.1), and the outcome indicators (pain relief rate, analgesic duration, quality of life, pain intensity, breakthrough pain frequency, and adverse reactions) were graded using GRADE profiler (v3.6).

Results

According to the established inclusion and exclusion criteria, a total of 43 studies was deemed eligible, involving 3 142 participants with CIBP. The results of meta-analysis showed that compared with oral three-step analgesic ladder therapy alone, the combined therapy of EA-TCM and three-step analgesic ladder has a significant improvement in pain relief rate [risk ratio (RR) = 1.32, 95% confidence interval (CI): 1.24 to 1.41, P < 0.000 01], analgesic duration [mean difference (MD) = 1.33, 95% CI: 0.97 to 1.69, P < 0.000 01], and quality of life (MD = 5.66, 95% CI: 4.88 to 6.44, P < 0.000 01). Furthermore, the combined therapy significantly reduced pain intensity (MD = – 1.00, 95% CI: – 1.19 to – 0.80, P < 0.000 01), breakthrough pain frequency (MD = – 0.43, 95% CI: – 0.51 to – 0.36, P < 0.000 01), and adverse reactions (RR = 0.60, 95% CI: 0.53 to 0.68, P < 0.000 01) in CIBP patients. Based on the GRADE assessment, the level of evidence varied from low to moderate.

Conclusion

EA-TCM combined with the three-step analgesic ladder therapy can effectively alleviate pain symptoms in patients with CIBP and improve their quality of life. Additionally, the EA-TCM can effectively reduce the incidence of adverse reactions associated with three-step analgesic therapy.
目的系统评价中药外用联合口服三步阶梯镇痛治疗癌性骨痛(CIBP)的整体疗效。方法在10个数据库和2个注册系统中检索EA-TCM联合三步镇痛阶梯疗法治疗CIBP的随机对照试验文献。包括4个中文数据库[中国生物医学文献数据库(SinoMed)、中国知网(CNKI)、万方数据库和中国科技期刊数据库(VIP)], 6个英文数据库(Scopus、Embase、Web of Science、PubMed、Cochrane Library和OpenGrey),以及2个注册系统(Chinese ClinicalTrial Registry和ClinicalTrials.gov)。文献检索的时间范围从每个数据库建立之初延伸至2023年12月31日。采用RevMan (v5.4.1)软件进行meta分析,采用GRADE profiler (v3.6)软件对结局指标(疼痛缓解率、镇痛持续时间、生活质量、疼痛强度、突破疼痛频率、不良反应)进行评分。结果根据建立的纳入和排除标准,共纳入43项研究,涉及3142名CIBP患者。meta分析结果显示,与单独口服三步镇痛阶梯治疗相比,EA-TCM联合三步镇痛阶梯治疗在疼痛缓解率上有显著改善[风险比(RR) = 1.32, 95%可信区间(CI): 1.24 ~ 1.41, P <;0.000 01],镇痛时间[mean difference (MD) = 1.33, 95% CI: 0.97 ~ 1.69, P <;[0.000 01],生活质量(MD = 5.66, 95% CI: 4.88 ~ 6.44, P <;0.000 01)。此外,联合治疗显著降低疼痛强度(MD = - 1.00, 95% CI: - 1.19至- 0.80,P <;0.000 01),突破疼痛频率(MD = - 0.43, 95% CI: - 0.51 ~ - 0.36, P <;0.000 01),不良反应(RR = 0.60, 95% CI: 0.53 ~ 0.68, P <;0.000 01)。根据GRADE评估,证据水平从低到中等不等。结论ea - tcm联合三步镇痛阶梯疗法可有效缓解CIBP患者疼痛症状,提高患者生活质量。此外,EA-TCM可以有效降低三步镇痛相关不良反应的发生率。
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引用次数: 0
Bioinformatics-based analysis of autophagy-related genes and prediction of potential Chinese medicines in diabetic kidney disease 基于生物信息学的糖尿病肾病自噬相关基因分析及中药潜力预测
Q3 Medicine Pub Date : 2025-03-01 DOI: 10.1016/j.dcmed.2025.03.008
Yufeng Xing , Zining Peng , Chaoyang Ye

Objective

To predict the autophagy-related pathogenesis and key diagnostic genes of diabetic kidney disease (DKD) through bioinformatics analysis, and to identify related Chinese medicines.

Methods

Data from sequencing microarrays GSE30528, GSE30529, and GSE1009 in the Gene Expression Omnibus (GEO) were employed. Differentially expressed genes (DEGs) with adjusted P < 0.05 from GSE30528 and GSE30529 were identified. Combining these DEGs with the human autophagy gene database, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses, and protein-protein interaction (PPI) network analysis were conducted on the obtained DKD autophagy-related genes. Subsequently, the least absolute shrinkage and selection operator (LASSO) regression and support vector machine-recursive feature elimination (SVM-RFE) algorithms were adopted to select autophagy-related genes. The diagnostic capability of these genes was assessed through analysis with the external validation set from microarray GSE1009, and relevant Chinese medicines were inversely predicted using the SymMap database.

Results

A total of <styled-content style-type="number">2014</styled-content> DEGs were selected from GSE30528 and GSE30529, leading to the identification of 37 DKD autophagy-related genes. GO analysis indicated 681 biological mechanisms, including autophagy regulation and plasma membrane microdomain activity. KEGG enrichment analysis identified 112 related signaling pathways. PPI network analysis showed a marked enrichment of autophagy-related genes in DKD. Through LASSO regression and SVM-RFE, four core diagnostic genes for autophagy in DKD were identified: protein phosphatase 1 regulatory subunit 15A (PPP1R15A), hypoxia inducible factor 1 alpha subunit (HIF1α), deleted in liver cancer 1 (DLC1), and ceroid lipofuscinosis neuronal 3 (CLN3). The external validation set demonstrated high diagnostic efficiency for these genes. Finally, 146 kinds of potential Chinese medicines were predicted using the SymMap database, with heat-clearing and detoxifying medicine and blood-activating and stasis-eliminating medicine accounting for the largest proportion (25/146 and 13/146, respectively).

Conclusion

This study analyzed and validated bioinformatics sequencing databases to elucidate the potential molecular mechanisms of DKD autophagy and predicted key diagnostic genes, potential therapeutic targets, and related Chinese medicines, laying a solid foundation for clinical research and application.
目的通过生物信息学分析预测糖尿病肾病(DKD)自噬相关发病机制和关键诊断基因,并鉴定相关中药。方法采用基因表达图谱(Gene Expression Omnibus, GEO)中测序芯片GSE30528、GSE30529和GSE1009的数据。调节P <的差异表达基因(DEGs);从GSE30528和GSE30529中鉴定出0.05。将这些基因与人类自噬基因数据库相结合,对获得的DKD自噬相关基因进行基因本体(GO)、京都基因与基因组百科全书(KEGG)富集分析和蛋白-蛋白相互作用(PPI)网络分析。随后,采用最小绝对收缩和选择算子(LASSO)回归和支持向量机递归特征消除(SVM-RFE)算法选择自噬相关基因。通过芯片GSE1009的外部验证集分析评估这些基因的诊断能力,并使用SymMap数据库反向预测相关中药。2014</style -content>;从GSE30528和GSE30529中选择deg,鉴定出37个DKD自噬相关基因。氧化石墨烯分析显示了681种生物机制,包括自噬调节和质膜微域活性。KEGG富集分析鉴定出112条相关信号通路。PPI网络分析显示,自噬相关基因在DKD中显著富集。通过LASSO回归和SVM-RFE,我们确定了4个DKD自噬的核心诊断基因:蛋白磷酸酶1调节亚基15A (PPP1R15A)、缺氧诱导因子1α亚基(HIF1α)、肝癌中缺失的1 (dclc1)和ceroid lipofuscinosis neuronal 3 (CLN3)。外部验证集对这些基因具有较高的诊断效率。最后利用SymMap数据库预测出146种潜在中药,其中清热解毒药和活血化瘀药所占比例最大(分别为25/146和13/146)。结论本研究通过对生物信息学测序数据库的分析和验证,阐明DKD自噬的潜在分子机制,预测关键诊断基因、潜在治疗靶点及相关中药,为临床研究和应用奠定坚实基础。
{"title":"Bioinformatics-based analysis of autophagy-related genes and prediction of potential Chinese medicines in diabetic kidney disease","authors":"Yufeng Xing ,&nbsp;Zining Peng ,&nbsp;Chaoyang Ye","doi":"10.1016/j.dcmed.2025.03.008","DOIUrl":"10.1016/j.dcmed.2025.03.008","url":null,"abstract":"<div><h3>Objective</h3><div>To predict the autophagy-related pathogenesis and key diagnostic genes of diabetic kidney disease (DKD) through bioinformatics analysis, and to identify related Chinese medicines.</div></div><div><h3>Methods</h3><div>Data from sequencing microarrays GSE30528, GSE30529, and GSE1009 in the Gene Expression Omnibus (GEO) were employed. Differentially expressed genes (DEGs) with adjusted <em>P</em> &lt; 0.05 from GSE30528 and GSE30529 were identified. Combining these DEGs with the human autophagy gene database, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses, and protein-protein interaction (PPI) network analysis were conducted on the obtained DKD autophagy-related genes. Subsequently, the least absolute shrinkage and selection operator (LASSO) regression and support vector machine-recursive feature elimination (SVM-RFE) algorithms were adopted to select autophagy-related genes. The diagnostic capability of these genes was assessed through analysis with the external validation set from microarray GSE1009, and relevant Chinese medicines were inversely predicted using the SymMap database.</div></div><div><h3>Results</h3><div>A total of &lt;styled-content style-type=\"number\"&gt;2014&lt;/styled-content&gt; DEGs were selected from GSE30528 and GSE30529, leading to the identification of 37 DKD autophagy-related genes. GO analysis indicated 681 biological mechanisms, including autophagy regulation and plasma membrane microdomain activity. KEGG enrichment analysis identified 112 related signaling pathways. PPI network analysis showed a marked enrichment of autophagy-related genes in DKD. Through LASSO regression and SVM-RFE, four core diagnostic genes for autophagy in DKD were identified: protein phosphatase 1 regulatory subunit 15A (<em>PPP1R15A</em>), hypoxia inducible factor 1 alpha subunit (<em>HIF1α</em>), deleted in liver cancer 1 (<em>DLC1</em>), and ceroid lipofuscinosis neuronal 3 (<em>CLN3</em>). The external validation set demonstrated high diagnostic efficiency for these genes. Finally, 146 kinds of potential Chinese medicines were predicted using the SymMap database, with heat-clearing and detoxifying medicine and blood-activating and stasis-eliminating medicine accounting for the largest proportion (25/146 and 13/146, respectively).</div></div><div><h3>Conclusion</h3><div>This study analyzed and validated bioinformatics sequencing databases to elucidate the potential molecular mechanisms of DKD autophagy and predicted key diagnostic genes, potential therapeutic targets, and related Chinese medicines, laying a solid foundation for clinical research and application.</div></div>","PeriodicalId":33578,"journal":{"name":"Digital Chinese Medicine","volume":"8 1","pages":"Pages 90-99"},"PeriodicalIF":0.0,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143936004","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Traditional Chinese medicine phenomics research on glycolipid metabolism disorder: a review 糖脂代谢紊乱的中医表型组学研究综述
Q3 Medicine Pub Date : 2025-03-01 DOI: 10.1016/j.dcmed.2025.03.005
Xinyi Fang , Linxuan Miao , Yanjiao Zhang , Yuxin Zhang , Runyu Miao , Huifang Guan , Jiaxing Tian
Traditional Chinese medicine (TCM) has demonstrated unique advantages in the prevention and treatment of chronic diseases such as glycolipid metabolism disorder. However, its widespread application has been hindered by the unclear biological essence of TCM syndromes and therapeutic mechanisms. As an emerging interdisciplinary field, phenomics integrates multi-dimensional data including genome, transcriptome, proteome, metabolome, and microbiome. When combined with TCM's holistic philosophy, it forms TCM phenomics, providing novel approaches to reveal the biological connotation of TCM syndromes and the mechanisms of herbal medicine. Taking glycolipid metabolism disorder as an example, this paper explores the application of TCM phenomics in glycolipid metabolism disorder. By analyzing molecular characteristics of related syndromes, TCM phenomics identifies differentially expressed genes, metabolites, and gut microbiota biomarkers to elucidate the dynamic evolution patterns of syndromes. Simultaneously, it deciphers the multi-target regulatory networks of herbal formulas, demonstrating their therapeutic effects through mechanisms including modulation of insulin signaling pathways, improvement of gut microbiota imbalance, and suppression of inflammatory responses. Current challenges include the subjective nature of syndrome diagnosis, insufficient standardization of animal models, and lack of integrated multi-omics analysis. Future research should employ machine learning, multimodal data integration, and cross-omics longitudinal studies to establish quantitative diagnostic systems for syndromes, promote the integration of precision medicine in TCM and western medicine, and accelerate the modernization of TCM.
中医药在防治糖脂代谢紊乱等慢性疾病方面具有独特的优势。然而,中医证候的生物学本质和治疗机制尚不明确,阻碍了中医证候的广泛应用。表型组学作为一门新兴的交叉学科,整合了基因组、转录组、蛋白质组、代谢组、微生物组等多维数据。结合中医整体哲学,形成中医表型组学,为揭示中医证候的生物学内涵和草药作用机制提供了新的途径。本文以糖脂代谢紊乱为例,探讨中医表型组学在糖脂代谢紊乱中的应用。中医表型组学通过分析相关证候的分子特征,识别差异表达的基因、代谢物和肠道微生物群生物标志物,阐明证候的动态演化模式。同时,它破译了草药配方的多靶点调节网络,通过调节胰岛素信号通路、改善肠道微生物群失衡和抑制炎症反应等机制证明了它们的治疗作用。目前的挑战包括综合征诊断的主观性、动物模型的不标准化以及缺乏综合的多组学分析。未来的研究应采用机器学习、多模态数据集成、跨组学纵向研究等方法,建立定量的证候诊断体系,促进中西医精准医学的融合,加快中医药现代化进程。
{"title":"Traditional Chinese medicine phenomics research on glycolipid metabolism disorder: a review","authors":"Xinyi Fang ,&nbsp;Linxuan Miao ,&nbsp;Yanjiao Zhang ,&nbsp;Yuxin Zhang ,&nbsp;Runyu Miao ,&nbsp;Huifang Guan ,&nbsp;Jiaxing Tian","doi":"10.1016/j.dcmed.2025.03.005","DOIUrl":"10.1016/j.dcmed.2025.03.005","url":null,"abstract":"<div><div>Traditional Chinese medicine (TCM) has demonstrated unique advantages in the prevention and treatment of chronic diseases such as glycolipid metabolism disorder. However, its widespread application has been hindered by the unclear biological essence of TCM syndromes and therapeutic mechanisms. As an emerging interdisciplinary field, phenomics integrates multi-dimensional data including genome, transcriptome, proteome, metabolome, and microbiome. When combined with TCM's holistic philosophy, it forms TCM phenomics, providing novel approaches to reveal the biological connotation of TCM syndromes and the mechanisms of herbal medicine. Taking glycolipid metabolism disorder as an example, this paper explores the application of TCM phenomics in glycolipid metabolism disorder. By analyzing molecular characteristics of related syndromes, TCM phenomics identifies differentially expressed genes, metabolites, and gut microbiota biomarkers to elucidate the dynamic evolution patterns of syndromes. Simultaneously, it deciphers the multi-target regulatory networks of herbal formulas, demonstrating their therapeutic effects through mechanisms including modulation of insulin signaling pathways, improvement of gut microbiota imbalance, and suppression of inflammatory responses. Current challenges include the subjective nature of syndrome diagnosis, insufficient standardization of animal models, and lack of integrated multi-omics analysis. Future research should employ machine learning, multimodal data integration, and cross-omics longitudinal studies to establish quantitative diagnostic systems for syndromes, promote the integration of precision medicine in TCM and western medicine, and accelerate the modernization of TCM.</div></div>","PeriodicalId":33578,"journal":{"name":"Digital Chinese Medicine","volume":"8 1","pages":"Pages 49-58"},"PeriodicalIF":0.0,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143936037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Digital Chinese Medicine
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