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Review Article: Night Shift Work, Circadian Disruption, and the Gut Microbiome: Implications for Human Health. 综述文章:夜班工作、昼夜节律中断和肠道微生物组:对人类健康的影响。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.2025059579
Silvia Vivarelli, Andrea Marconi, Serena Matera, Luca Falzone, Concettina Fenga

The gut microbiome (GM) plays a critical role in regulating a number of physiological processes within the human host, including metabolism, immune function, and protection from pathogens. Emerging evidence suggests that occupational exposures, particularly working night shifts or during irregular hours, significantly influence the GM composition and functionality. These disruptions are closely tied to the misalignment between the host's circadian rhythms and the GM's internal clocks, leading to dysbiosis and increased systemic inflammation. This misalignment has been linked to the development of several health conditions, including dysmetabolism, type 2 diabetes, obesity, cardiovascular diseases, and gastrointestinal disorders. This review provides a thorough analysis of the current research on workers who are exposed to night shifts, highlighting the profound impact of circadian misalignment on both the GM wellbeing and the overall human health. Innovative interventions, such as dietary supplementation with probiotics, prebiotics, circadian-aligned nutrition, and time-restricted eating, offer promising strategies for restoring the GM balance and synchronizing the microbiome with the host's circadian rhythms affected by occupational stressors. Precision-based interventions tailored to specific occupational exposures and circadian patterns may provide effective solutions for improving worker's health and preventing long-term chronic diseases associated with detrimental exposures. In light of these findings, integrating microbiome-targeted approaches into occupational health policies could lead to better health outcomes, reduce the risk of chronic diseases, and enhance the overall well-being of at-risk workers. Occupational research should continue to explore these personalized approaches, together with novel assessment strategies, to optimize health interventions and mitigate the long-term effects of night shift work.

肠道微生物组(GM)在调节人类宿主体内的许多生理过程中起着关键作用,包括代谢、免疫功能和对病原体的保护。新出现的证据表明,职业性接触,特别是夜班或不规律的工作时间,显著影响转基因成分和功能。这些破坏与宿主的昼夜节律和GM的内部时钟之间的不一致密切相关,导致生态失调和全身炎症增加。这种错位与几种健康状况的发展有关,包括代谢障碍、2型糖尿病、肥胖、心血管疾病和胃肠道疾病。这篇综述对目前对夜班工人的研究进行了全面分析,强调了昼夜节律失调对转基因健康和整体人类健康的深远影响。创新的干预措施,如膳食中补充益生菌、益生元、符合昼夜节律的营养和限时饮食,为恢复转基因平衡和使微生物群与受职业压力源影响的宿主昼夜节律同步提供了有希望的策略。针对特定职业暴露和昼夜节律模式量身定制的精准干预措施,可为改善工人健康和预防与有害暴露有关的长期慢性疾病提供有效解决办法。根据这些发现,将针对微生物组的方法纳入职业卫生政策可能会带来更好的健康结果,降低慢性疾病的风险,并提高高危工人的整体福祉。职业研究应继续探索这些个性化的方法,以及新的评估策略,以优化健康干预措施,减轻夜班工作的长期影响。
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引用次数: 0
Review Article: Probiotics-Mediated Enhancement of Checkpoint Inhibitor Blockade for HER2+ Breast Cancer. 综述文章:益生菌介导的HER2+乳腺癌检查点抑制剂阻断增强。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.2025058633
Mai Ho, Benjamin Bonavida

Immune checkpoint inhibitors (ICIs) have significantly improved survival rates for many types of cancer, giving patients survival prognoses that had been previously unattainable. Unfortunately, in many advanced cancers, including breast cancer (BC), objective response rates (ORRs) have been reported to be between 5% and 25% and immune-related adverse events (irAEs) can be severe, emphasizing the need to improve the effectiveness of ICIs while minimizing irAEs. In recent years, probiotics and various bacteria consortia have gained growing recognition for their application in immunotherapies for various cancers. Many preclinical models have demonstrated that probiotics significantly influence the gut microbiome, enhancing the production of beneficial metabolites and promoting interactions with cytotoxic T cells to amplify the antitumor effects of ICIs. For the treatment of HER2+ BC, current clinical trials have administered ICIs in combination with anti-HER2 agents (e.g., trastuzumab) to enhance treatment efficacy. Thus far, this combination has shown promising results, especially in patients with advanced PDL1-positive disease. However, as these trials are still ongoing, the efficacy of immune checkpoint blockade (ICB) therapy for HER2+ BCs remains inconclusive and requires further investigation. Thus, this review discusses the use of probiotics in ICB therapy, focusing on the potential role of probiotics in HER2+ BC response to ICIs, their underlying mechanisms and challenges.

免疫检查点抑制剂(ICIs)显著提高了许多类型癌症的生存率,为患者提供了以前无法实现的生存预后。不幸的是,在包括乳腺癌(BC)在内的许多晚期癌症中,据报道,客观缓解率(orr)在5%至25%之间,免疫相关不良事件(irAEs)可能很严重,这强调了在尽量减少irAEs的同时提高ICIs有效性的必要性。近年来,益生菌和各种菌群在各种癌症免疫治疗中的应用越来越受到人们的重视。许多临床前模型表明,益生菌显著影响肠道微生物群,增强有益代谢物的产生,促进与细胞毒性T细胞的相互作用,从而增强ICIs的抗肿瘤作用。对于HER2+ BC的治疗,目前的临床试验已将ICIs与抗HER2药物(如曲妥珠单抗)联合使用,以提高治疗效果。到目前为止,这种组合已经显示出令人鼓舞的结果,特别是在晚期pdl1阳性疾病患者中。然而,由于这些试验仍在进行中,免疫检查点阻断(ICB)治疗HER2+ bc的疗效仍不确定,需要进一步研究。因此,本文讨论了益生菌在ICB治疗中的应用,重点讨论了益生菌在HER2+ BC对ici反应中的潜在作用、其潜在机制和挑战。
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引用次数: 0
Review Article: Understanding the Role of the Microbiome in Breast Cancer Progression. 综述文章:了解微生物组在乳腺癌进展中的作用。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.2024056468
Seema Kumari, Mundla Srilatha, Ganji Purnachndra Nagaraju

The breast cancer fatality rate poses a global health concern. Dysbiosis of the gut and breast microbiome plays a crucial role in both the onset and metastasis of breast cancer by influencing immune response and hormone metabolism. Probiotics, antibiotics, and KEY WORDS: breast cancer, immunotherapy, microbiome, exosomes, gut microbiota are used in microbiome-targeted drugs as therapy alternatives. Metabolic alterations accelerate the development of cancer. For instance, 27-hydroxycholesterol promotes tamoxifen resistance and estrogen receptor-positive (ER+) breast cancer. Malignant breast tissues differ from healthy breast tissues by their unique microbial profiles. The microbiome influences metabolic pathways such as lipid and glucose metabolism and microbial compounds like β-glucuronidases and short-chain fatty acids (SCFAs) influence metabolism, drug resistance, and progression of cancer. New approaches to treating breast cancer include immunotherapies, nanoparticle drug delivery systems, and emerging therapeutics based on interactions among the microbiome, the immune system, and exosomes. These approaches may improve immune responses, decrease chemotherapy resistance, and stop the spread of cancer. Here, we discuss dysbiosis in breast cancer and therapeutic approaches.

乳腺癌的死亡率是一个全球性的健康问题。肠道和乳房微生物群的失调通过影响免疫反应和激素代谢在乳腺癌的发生和转移中起着至关重要的作用。益生菌、抗生素和关键词:乳腺癌、免疫治疗、微生物组、外泌体、肠道微生物群被用于微生物组靶向药物作为治疗方案。代谢的改变加速了癌症的发展。例如,27-羟基胆固醇促进他莫昔芬耐药性和雌激素受体阳性(ER+)乳腺癌。恶性乳腺组织因其独特的微生物特征而不同于健康乳腺组织。微生物组影响代谢途径,如脂质和葡萄糖代谢,微生物化合物,如β-葡萄糖醛酸酶和短链脂肪酸(SCFAs)影响代谢、耐药性和癌症进展。治疗乳腺癌的新方法包括免疫疗法、纳米颗粒药物递送系统和基于微生物组、免疫系统和外泌体之间相互作用的新兴疗法。这些方法可以改善免疫反应,减少化疗耐药性,并阻止癌症的扩散。在这里,我们讨论乳腺癌的生态失调和治疗方法。
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引用次数: 0
Review Article: Disrupted Oral Microbiota and Its Implications in Cancer Onset and Progression: A Narrative Review. 综述文章:口腔微生物群紊乱及其在癌症发生和发展中的意义:一篇叙述性综述。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.2025059551
Giovanni Cultrera, Sabrina Franco, Graziana Spoto, Massimo Libra, Luca Falzone

The oral microbiota plays a pivotal role in maintaining oral health, but its dysbiosis has been increasingly implicated in the development of systemic diseases, including cancer. Emerging evidence highlights the potential contribution of oral microorganisms to carcinogenesis in the oral cavity and distant organs, such as the lungs, pancreas, and genitourinary tract. This review explores the mechanisms through which the oral microbiota influences cancer development and treatment response, mainly driven by microbial translocation, systemic inflammation, immune modulation, and the release of carcinogenic metabolites. Additionally, the review discusses how oral microbiota perturbations interact with host factors, such as diet, systemic diseases, genetics, and cancer therapies, to influence tumor initiation, progression, and response to treatment. A critical analysis of past and emerging literature shows that specific microbial taxa potentially influence tumor progression and immune responses, including Fusobacterium, Porphyromonas, Aggregatibacter and Treponema. The detection of these microorganisms and the study of oral microbiome profiling in cancer care may offer new diagnostic and therapeutic strategies; however, further studies with homogeneous patient populations are needed to fully understand the contributions of oral dysbiosis in cancer development and treatment responses.

口腔微生物群在维持口腔健康中起着关键作用,但其生态失调已越来越多地与包括癌症在内的全身性疾病的发展有关。新出现的证据强调了口腔微生物对口腔和远端器官(如肺、胰腺和泌尿生殖系统)癌变的潜在贡献。这篇综述探讨了口腔微生物群影响癌症发展和治疗反应的机制,主要由微生物易位、全身炎症、免疫调节和致癌代谢物的释放驱动。此外,本文还讨论了口腔微生物群扰动如何与宿主因素(如饮食、全系统疾病、遗传和癌症治疗)相互作用,从而影响肿瘤的发生、进展和对治疗的反应。对过去和新兴文献的批判性分析表明,特定的微生物类群可能影响肿瘤的进展和免疫反应,包括梭杆菌、卟啉单胞菌、聚合杆菌和密螺旋体。这些微生物的检测和口腔微生物组谱的研究在癌症治疗中可能提供新的诊断和治疗策略;然而,需要对同质患者群体进行进一步的研究,以充分了解口腔生态失调在癌症发展和治疗反应中的作用。
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引用次数: 0
Review Article: Probiotics and Oncogenesis: Clinical Implications. 综述文章:益生菌和肿瘤发生:临床意义。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.2025058336
Brayden K Leyva, Benjamin Bonavida

The interplay between probiotics and cancer development has emerged as a complex but important field in oncology research. While probiotics are known gut microbiome modulators and have the ability to modulate an immune response, their role in the prevention and treatment of cancer are inadequately understood. Evidence from peer-reviewed literature suggests that probiotics-mediated effects contribute to cancer prevention and treatment. Such effects include the enhancement of barrier function, production of anti-inflammatory agents, modulation of immune responses, and regulation of the tumor microenvironment. Clinical studies offer promising results in terms of therapeutic applications in certain cancers where probiotic bacteria may help reduce risk factors while enhancing treatment efficacy. Emerging evidence indicates potential benefits in the combination of probiotics with immunotherapy, including improved response rates and reduced side effects. Significant challenges remain, however, including the standardization of probiotic bacterial constituents, the route of administration, optimal delivery methods and safety concerns. Future research should focus on personalized treatment plans with emphasis on strain-specific effects and the development of next-generation probiotics specifically targeted for cancer applications, in combination with current treatment therapeutics.

益生菌与癌症发展之间的相互作用已成为肿瘤学研究中一个复杂而重要的领域。虽然益生菌是已知的肠道微生物组调节剂,具有调节免疫反应的能力,但它们在预防和治疗癌症方面的作用尚不充分了解。来自同行评审文献的证据表明,益生菌介导的作用有助于癌症的预防和治疗。这些作用包括增强屏障功能、产生抗炎剂、调节免疫反应和调节肿瘤微环境。临床研究在某些癌症的治疗应用方面提供了有希望的结果,其中益生菌可能有助于减少风险因素,同时提高治疗效果。新出现的证据表明,益生菌与免疫疗法联合使用的潜在益处,包括提高反应率和减少副作用。然而,重大的挑战仍然存在,包括益生菌成分的标准化、给药途径、最佳给药方法和安全问题。未来的研究应该集中在个性化的治疗方案上,重点是菌株特异性的效果和开发针对癌症应用的下一代益生菌,并结合当前的治疗方法。
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引用次数: 0
Identification of Glucose-6-Phosphate Dehydrogenase (G6PD) Inhibitors by Cheminformatics Approach. 葡萄糖-6-磷酸脱氢酶(G6PD)抑制剂的化学信息学鉴定
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.2024056445
Srilatha Mundla, Madhu Sudhana Saddala

Glucose-6-phosphate dehydrogenase (G6PD) is an essential enzyme in the pentose phosphate pathway (PPP), a critical glucose metabolism pathway linked to cancer cell proliferation and metastasis. Inhibiting the PPP presents a promising approach to cancer treatment. The G6PD enzyme structure was obtained from the Protein Data Bank (PDB). The active site responsible for NADP+ binding was identified and used for structure-based pharmacophore design. This pharmacophore model was applied to the ZINC database to screen for small molecules. Molecular docking was accomplished using AutoDock Vina, and protein-ligand interactions were analyzed. Additionally, compounds were validated based on in silico ADMET properties to select the most promising candidates. A comprehensive screening and docking procedure identified several potential G6PD inhibitors. These compounds showed favorable interactions with the active site and met the criteria for optimal ADMET properties. The newly proposed G6PD inhibitors, with their potential to revolutionize cancer therapy, could serve as lead molecules for further research and development, inspiring the audience about the possibilities in cancer therapy.

葡萄糖-6-磷酸脱氢酶(glucose -6-phosphate dehydrogenase, G6PD)是戊糖磷酸途径(pentose phosphate pathway, PPP)中的一种必需酶,是与癌细胞增殖和转移相关的关键葡萄糖代谢途径。抑制PPP是一种很有希望的癌症治疗方法。从蛋白质数据库(Protein Data Bank, PDB)中获得G6PD酶的结构。确定了NADP+结合的活性位点,并将其用于基于结构的药效团设计。将该药效团模型应用于锌数据库中筛选小分子。利用AutoDock Vina完成分子对接,并分析蛋白质与配体的相互作用。此外,化合物基于硅ADMET特性进行验证,以选择最有希望的候选化合物。综合筛选和对接过程确定了几种潜在的G6PD抑制剂。这些化合物与活性位点表现出良好的相互作用,符合最佳ADMET性质的标准。新提出的G6PD抑制剂具有彻底改变癌症治疗的潜力,可以作为进一步研究和开发的先导分子,激发观众对癌症治疗的可能性。
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引用次数: 0
Machine Learning Approaches for Neuroblastoma Risk Prediction and Stratification. 神经母细胞瘤风险预测和分层的机器学习方法。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.2024056447
Ramakrishna Vadde, Manoj Kumar Gupta

Machine learning (ML) holds great promise in advancing risk prediction and stratification for neuroblastoma, a highly heterogeneous pediatric cancer. By utilizing large-scale biological and clinical data, ML models can detect complex patterns that traditional approaches often overlook, enabling more personalized treatments and better patient outcomes. Various ML techniques, such as support vector machines, random forests, and deep learning, have shown superior performance in predicting survival, relapse, and treatment responses in neuroblastoma patients compared to conventional methods. However, challenges like limited data size, model interpretability, data variability, and difficulties in clinical integration hinder broader adoption. Additionally, ethical concerns related to bias and privacy must be addressed. Future work should focus on improving data quality, enhancing model transparency, and conducting thorough clinical validation. With these advancements, ML has the potential to revolutionize neuroblastoma care by refining early diagnosis, risk assessment, and therapeutic decision-making.

机器学习(ML)在推进神经母细胞瘤(一种高度异质性的儿科癌症)的风险预测和分层方面具有很大的前景。通过利用大规模的生物学和临床数据,机器学习模型可以检测传统方法经常忽略的复杂模式,从而实现更个性化的治疗和更好的患者结果。与传统方法相比,各种ML技术,如支持向量机、随机森林和深度学习,在预测神经母细胞瘤患者的生存、复发和治疗反应方面表现出了优越的性能。然而,有限的数据规模、模型可解释性、数据可变性和临床整合困难等挑战阻碍了更广泛的采用。此外,必须解决与偏见和隐私有关的道德问题。未来的工作应侧重于提高数据质量,增强模型透明度,并进行彻底的临床验证。有了这些进步,ML有可能通过改进早期诊断、风险评估和治疗决策来彻底改变神经母细胞瘤的治疗。
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引用次数: 0
Preface. 前言。
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.v30.i3.40
Riyaz Basha, Ganji Purnachndra Nagaraju
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引用次数: 0
Research Article: The Aromatase Gene rs10046 T>C Polymorphism Does Not Contribute to the Risk of Breast Cancer: A Meta-Analysis. 研究文章:芳香化酶基因rs10046 T>C多态性与乳腺癌风险无关:一项荟萃分析
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.2025059847
Manju Patel, Arifullah Mohammed, Mohammad Khairul Azhar Abdul Razab, L V K S Bhaskar

Breast cancer is the most common cancer diagnosed in women. Increased exposure to oestrogens is one of the major risk factors for breast cancer. The synthesis of estrogens is mediated by the aromatase enzyme that encoded by CYP19A1 gene. Further, highest aromatase activities were documented in tumor-associated stroma tissues of breast. Genetic polymorphisms in CYP19A1 gene are known to modulate the estradiol and to the estradiol/testosterone ratio. The rs10046 T>C polymorphism in the 3' untranslated region of CYP19A1 gene has been linked to the risk of breast cancer. The studies conducted till date are not consistent in reporting the association of rs10046 polymorphism with breast cancer. In the present study, we have conducted a meta-analysis of data available for CYP19A1 rs10046 T>C and breast cancer from 23 studies. The outcome of the present meta-analysis showed that there is no association between rs10046 polymorphism and breast cancer risk in all genetic models [C vs. T: odds ratio (OR) = 0.99, confidence interval (CI) = 0.88-1.23; CC vs. TC + TT: OR = 1.02, CI = 0.88-1.18; TC + CC vs. GG: OR = 0.97, CI = 0.80-1.17]. Further, ethnicity based subgroups also failed to show the association between breast cancer and rs10046. Begg's funnel plots and Egger's tests did not reveal evidence for publication bias (Egger's P value = 0.832). In summary, the rs10046 T>C polymorphism on CYP19A1 is not a major risk factor for breast cancer.

乳腺癌是女性中最常见的癌症。增加的雌激素暴露是乳腺癌的主要危险因素之一。雌激素的合成是由CYP19A1基因编码的芳香酶介导的。此外,最高的芳香酶活性记录在肿瘤相关的乳腺间质组织中。已知CYP19A1基因的遗传多态性可以调节雌二醇和雌二醇/睾酮比。CYP19A1基因3'非翻译区rs10046 T>C多态性与乳腺癌的风险有关。迄今为止所进行的研究在报道rs10046多态性与乳腺癌的关系方面并不一致。在本研究中,我们对23项研究中CYP19A1 rs10046 T>C和乳腺癌的数据进行了荟萃分析。本荟萃分析的结果显示,rs10046多态性与乳腺癌风险在所有遗传模型中均无相关性[C vs. T:优势比(OR) = 0.99,置信区间(CI) = 0.88-1.23;CC vs. TC + TT: OR = 1.02, CI = 0.88-1.18;TC + CC vs. GG: OR = 0.97, CI = 0.80 ~ 1.17]。此外,基于种族的亚组也未能显示乳腺癌与rs10046之间的关联。Begg的漏斗图和Egger的检验没有发现发表偏倚的证据(Egger的P值= 0.832)。综上所述,CYP19A1上的rs10046 T>C多态性不是乳腺癌的主要危险因素。
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引用次数: 0
Interaction of Heat Shock Protein 90 (HSP90), Ganetespib, and 5-Fluorouracil by Computational Approach for Colorectal Cancer Therapy. 热休克蛋白90 (HSP90)、Ganetespib和5-氟尿嘧啶在结直肠癌治疗中的相互作用的计算方法
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1615/CritRevOncog.2024056394
Yuvasri Golivi, Santosh Kumar Behera, Afroz Alam, Sujatha Peela

The heat shock protein 90 kDa (HSP90) is highly conserved across diverse species, including humans, and upregulated in various cancers. As a result, it has been identified as a promising target for advancing anticancer medicine. The introduction of combinatorial chemistry in drug discovery has emphasized the need to develop new technologies in screening, designing, decoding, synthesizing, and screening combinatorial drug libraries. The current investigation was carried out to report improved inhibition efficacy of ganetespib, fluorouracil (5-FU), and its combinatorial drug treatment (ganetespib + 5-FU) against the HSP90 molecular chaperone through an in silico approach. Both drugs and their combination are ATP-competitive inhibitors; they inhibit the HSP90α N-terminal and block the ATP binding site. The structural and functional basis and their combination were confirmed through molecular docking interaction with HSP90α. The inhibitors' conformational effects and their combination against the HSP90α protein were studied using powerful MD simulations. The key interacting residues of HSP90α with ganetespib, 5-FU, and ganetespib + 5-FU were identified via energy binding calculations and molecular dynamics. This study is the first to offer atomistic insights into the interaction between ganetespib, 5-FU, and ganetespib + 5-FU with the HSP90α protein N-terminal domain. The results of our in silico study will open better avenues for developing potential cancer inhibitors in the near future.

热休克蛋白90kda (HSP90)在包括人类在内的多种物种中高度保守,并在多种癌症中上调。因此,它已被确定为推进抗癌药物的一个有希望的目标。药物发现中组合化学的引入强调了在筛选、设计、解码、合成和筛选组合药物文库方面开发新技术的必要性。本研究旨在通过计算机方法报告ganetespib、氟尿嘧啶(5-FU)及其联合药物治疗(ganetespib + 5-FU)对HSP90分子伴侣的抑制效果。这两种药物及其联合使用都是atp竞争性抑制剂;它们抑制HSP90α n端并阻断ATP结合位点。通过与HSP90α的分子对接作用,确定了其结构和功能基础及其组合。利用强大的MD模拟研究了抑制剂对HSP90α蛋白的构象效应及其联合作用。通过能量结合计算和分子动力学鉴定了HSP90α与ganetespib、5-FU和ganetespib + 5-FU的关键相互作用残基。这项研究首次从原子角度深入研究了ganetespib、5-FU和ganetespib + 5-FU与HSP90α蛋白n端结构域之间的相互作用。我们的计算机研究结果将在不久的将来为开发潜在的癌症抑制剂开辟更好的途径。
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引用次数: 0
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Critical Reviews in Oncogenesis
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