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Correlation of miR-214, miR-204, miR-25, miR-15a Expression with IL-33 and Malondialdehyde in Blood Samples from Patients with Alzheimer's Disease. 阿尔茨海默病患者血液样本中miR-214, miR-204, miR-25, miR-15a表达与IL-33和丙二醛的相关性
IF 1.7 Pub Date : 2026-01-23 DOI: 10.2174/0122115366411857251025004952
Haydar Sahib Almawashee, Mohammad Khalaj-Kondori, Mohammad Ali Hosseinpour Feizi, Reza Safaralizadeh

Introduction: Alzheimer's disease (AD) is a late-onset neurodegenerative disease that affects older people. Deregulations of miRNAs play essential roles in AD pathogenesis; as a re-sult, they might be potential biomarkers for AD development, diagnosis, and treatment. This case-control study aimed to assess the expression of miR-214, miR-204, miR-15a, miR-25, and inves-tigate their correlations with the expression of IL-33, plasma level of Malondialdehyde (MDA), and Mini-Mental State Examination (MMSE) score of the AD patients.

Methods: Blood samples were obtained from 125 participants, including 75 AD patients and 50 healthy controls. Plasma MDA level was assessed using the ZellBio ELISA kit. Total RNA was extracted from blood lymphocytes using RiboExTM (GeneAll), and expression levels of miRNAs and IL-33 were evaluated by qRT-PCR.

Results: Results showed that miR-15a and miR-25, and IL-33 were downregulated in the pa-tients' group, but miR-214 and miR-204 were upregulated. Besides, the plasma level of MDA was significantly higher in the AD patients. A statistically significant negative correlation was observed between miR-15a and IL-33 expression. The MDA level showed a negative correlation with MMSE and a positive correlation with IL-33. Correlations between the miRNAs and MDA or MMSE scores were all non-significant. However, ROC curve analysis revealed that expres-sions of the studied miRNAs, IL-33, and the plasma level of MDA effectively differentiate AD patients from healthy controls.

Discussion: Results showed that expression levels of miR-214, miR-204, miR-25, miR-15a, and IL-33 and MDA plasma levels are deregulated in AD patients, highlighting their potential relation with AD pathogenesis.

Conclusion: Expression levels of the studied miRNAs and IL33, and plasma level of MDA might be considered as potential biomarkers for AD development and diagnosis.

简介:阿尔茨海默病(AD)是一种影响老年人的晚发性神经退行性疾病。mirna调控失调在AD发病机制中起重要作用;因此,它们可能是阿尔茨海默病发展、诊断和治疗的潜在生物标志物。本病例对照研究旨在评估AD患者miR-214、miR-204、miR-15a、miR-25的表达,并探讨其与IL-33表达、血浆丙二醛(MDA)水平和轻度精神状态检查(MMSE)评分的相关性。方法:125名参与者的血液样本,包括75名AD患者和50名健康对照。采用ZellBio ELISA试剂盒检测血浆MDA水平。采用RiboExTM (GeneAll)软件提取外周血淋巴细胞总RNA,采用qRT-PCR检测mirna和IL-33的表达水平。结果:结果显示,患者组miR-15a、miR-25、IL-33下调,miR-214、miR-204上调。此外,AD患者血浆MDA水平明显升高。miR-15a与IL-33表达呈显著负相关。MDA水平与MMSE呈负相关,与IL-33呈正相关。mirna与MDA或MMSE评分之间的相关性均不显著。然而,ROC曲线分析显示,所研究的mirna、IL-33的表达和血浆MDA水平可以有效地区分AD患者和健康对照组。讨论:结果显示,AD患者血浆中miR-214、miR-204、miR-25、miR-15a和IL-33的表达水平和MDA水平失调,突出了它们与AD发病机制的潜在关系。结论:所研究的mirna和IL33的表达水平以及血浆MDA水平可能被认为是AD发展和诊断的潜在生物标志物。
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引用次数: 0
Microrna Expression in Aurelia aurita Metamorphosis. 小rna在auria auria变态中的表达。
IF 1.7 Pub Date : 2025-10-28 DOI: 10.2174/0122115366376242250622154915
Alberto Izzotti, Clelia Norese, Nicola Pussini, Elena Izzotti, Silvia Lavorano, Marco Giovine, Giorgio Bavestrello, Marina Pozzolini

Introduction: In animal taxa and jellyfish, the same genome encodes for the dif-ferent phenotypes that characterize life stages that follow each other during ontogeny. This situation underscores the existence of profound regulation of genomic information at the epigenetic level. MicroRNAs are fundamental epigenetic regulators. The aim of this study is to evaluate the role of microRNA regulation during jellyfish metamorphosis and to explore the existence of evolutionarily conserved microRNAs.

Methods: Specimens belonging to the 4-metamorphosis stages of A. aurita (polyps, ephyra, young, and adult jellyfish) were bred and collected. The expression of 2,549 miRNAs for each stage was tested using microarray technology. The comparison of microRNA expres-sion for each phase was performed using line plot analysis and Principal Component Anal-ysis of variance (PCA), while the identification of microRNA clusters was performed via volcano plot analysis.

Results: A remarkable number of A. aurita miRNAs specifically hybridize with a human miRNA library. Each metamorphosis stage is characterized by a different level of expression of miRNAs: 1) Polyp vs. Ephyra stage: 128 upregulated, 2 downregulated; 2) Ephyra vs. Young stage: 2 upregulated, 135 downregulated; 3) Young vs. Adult stage: 69 upregulated, 6 downregulated. Specific functions inferred from known activities of corresponding miR-NAs in higher animals (PubMed database) appear to be coherent with the correlated exper-imental model.

Discussion: Present results reveal that microRNAs with human homologs undergo specific expression changes throughout Aurelia aurita metamorphosis. This observation reinforces the hypothesis of a shared evolutionary origin of certain miRNA families between Cnidaria and Bilateria. The dynamic and stage-specific regulation pattern observed suggests that miR-NAs play a key role in orchestrating the complex transitions involved in jellyfish develop-ment. These findings point to a broader conservation of epigenetic mechanisms, such as miRNA-mediated gene silencing, which may have emerged early in metazoan evolution and contributed to the regulation of cell differentiation and phenotype modulation.

Conclusion: The present study highlights the importance of Aurelia aurita as a model for investigating miRNA-driven epigenetic regulation in non-bilaterian animals. The identifica-tion of human-homologous miRNAs provides novel insights into the evolutionary stability of the epigenetic machinery and suggests conserved regulatory functions across distant taxa. Although limited by the use of a human-based microarray platform, the data presented here lay a solid foundation for future studies employing sequencing and functional assays to fur-ther explore the role of miRNAs in cnidarian development and evolution.

在动物分类群和水母中,相同的基因组编码不同的表型,这些表型表征了个体发育过程中彼此遵循的生命阶段。这种情况强调了在表观遗传水平上存在对基因组信息的深刻调控。microrna是基本的表观遗传调控因子。本研究的目的是评估microRNA在水母变态过程中的调控作用,并探索进化上保守的microRNA的存在。方法:饲养和采集耳水母(水螅、前体、幼体和成体)4个变态阶段的标本。使用微阵列技术检测每个阶段2,549个mirna的表达。使用线形图分析和主成分方差分析(PCA)比较各阶段的microRNA表达,通过火山图分析鉴定microRNA簇。结果:大量aurita miRNA与人类miRNA文库特异性杂交。每个变态阶段的特点是mirna的表达水平不同:1)息肉期与肺水肿期:128个表达上调,2个表达下调;2) Ephyra与Young期:2个上调,135个下调;3)青年期与成年期:69个上调,6个下调。从高等动物中相应miR-NAs的已知活性推断出的特定功能(PubMed数据库)似乎与相关的实验模型一致。讨论:目前的研究结果表明,具有人类同源物的microrna在auria aurita变态过程中发生特异性表达变化。这一观察结果加强了刺胞动物和两侧门动物之间某些miRNA家族共同进化起源的假设。观察到的动态和阶段特异性调控模式表明,miR-NAs在协调水母发育过程中涉及的复杂转变中起着关键作用。这些发现指出了表观遗传机制的更广泛的保护,如mirna介导的基因沉默,这可能在后生动物进化的早期就出现了,并有助于细胞分化和表型调节的调节。结论:本研究强调了auria aurita作为研究mirna驱动的非双侧动物表观遗传调控的模型的重要性。人类同源mirna的鉴定为表观遗传机制的进化稳定性提供了新的见解,并表明在遥远的分类群中存在保守的调控功能。虽然受限于使用基于人的微阵列平台,但本文提供的数据为未来利用测序和功能分析进一步探索mirna在刺胞动物发育和进化中的作用奠定了坚实的基础。
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引用次数: 0
Unlocking the Potential of Exosomes: Transforming Wound Healing and Therapeutic Potential. 释放外泌体的潜力:改变伤口愈合和治疗潜力。
IF 1.7 Pub Date : 2025-10-16 DOI: 10.2174/0122115366384426250915095432
Shahjad, Nishat Fatma, Zeeshan Ali, Arun Kumar, Mohd Moonis, Phool Chandra

Difficulties in wound healing pose a considerable clinical problem and are a significant source of morbidity in the general population. Systemic disorders such as diabetes and venous insufficiency often result in chronic wounds and an impaired healing process. The healthcare cost of treating chronic wounds in the U.S. already exceeds 20 billion dollars per year and is expected to rise with an aging population and increasing incidence of diabetes. Recently, research and review articles have been used to understand the normal healing process and identify the reasons why certain wounds fail to heal, which should enable the development of more effective thera-peutic interventions. Animal models have provided valuable information; however, the healing process differs between humans and animals, and data obtained from in vitro studies can be chal-lenging to extrapolate to a clinical context. In conclusion, this study aims to summarize the current understanding of inflammation, epithelialization, and tissue repair processes, mainly through the use of data from in vitro and in vivo studies. Inflammation, re-epithelialization, granulation tissue development, and collagen remodeling are the fundamental steps in the healing process. As a result, any deviation from the normal sequence and time course of events may result in abnormal healing. Wound healing occurs to repair damaged, devitalized, or missing cells and tissues. In human beings, the result is the reestablishment of structural and functional integrity. This is a vital process that all living organisms undergo at some stage in their lives.

伤口愈合困难是一个相当大的临床问题,也是普通人群发病的重要来源。全身性疾病,如糖尿病和静脉功能不全,往往导致慢性伤口和愈合过程受损。在美国,治疗慢性伤口的医疗费用每年已经超过200亿美元,而且随着人口老龄化和糖尿病发病率的增加,预计还会增加。最近,研究和评论文章已被用于了解正常愈合过程,并确定某些伤口无法愈合的原因,这应该能够开发更有效的治疗干预措施。动物模型提供了有价值的信息;然而,人类和动物的愈合过程是不同的,从体外研究中获得的数据很难推断出临床情况。总之,本研究旨在总结目前对炎症、上皮化和组织修复过程的理解,主要通过使用体外和体内研究的数据。炎症、再上皮化、肉芽组织发育和胶原蛋白重塑是愈合过程中的基本步骤。因此,任何偏离正常顺序和时间进程的事件都可能导致异常愈合。伤口愈合是为了修复受损、失活或缺失的细胞和组织。在人类中,结果是结构和功能完整性的重建。这是所有生物在生命的某个阶段都要经历的重要过程。
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引用次数: 0
Nanoparticle Carriers: A New Era of Precise CRISPR/Cas9 Gene Editing. 纳米粒子载体:精确 CRISPR/Cas9 基因编辑的新时代。
IF 1.7 Pub Date : 2025-07-11 DOI: 10.2174/0122115366319848241022092805
Bhawna Sharma, Iti Chauhan, Gaurav Kumar, Khushboo Bhardwaj, Raj Kumar Tiwari

The revolutionary CRISPR/Cas9 gene editing technology holds immense potential for treating genetic diseases and tackling conditions like cancer. However, efficient delivery remains a significant challenge. This is where nanoparticles come into play, emerging as powerful allies in the realm of drug delivery. Nanoparticles can accommodate larger insertion sizes, enabling the incorporation of larger Cas9 enzymes and complex guide RNAs, thus opening up the possibility of editing previously inaccessible genetic regions. Their relatively straightforward and scalable production processes make them cost-effective options for wider applications. Notably, nanoparticles excel in vivo, demonstrating efficient tissue penetration and targeted delivery, which are crucial for maximizing therapeutic impact while minimizing side effects. This review aims to explore the potential of nanoparticle-based delivery systems for CRISPR/Cas9, highlighting their advantages and challenges in gene editing applications. The diverse range of nanoparticles further bolsters their potential. Polymeric nanoparticles, for instance, offer tunable properties for customization and controlled release of the CRISPR cargo. Lipid-based nanoparticles facilitate efficient cellular uptake and endosomal escape, ensuring the CRISPR components reach the target DNA. Even gold nanoparticles, known for their unique biocompatibility and photothermal properties, hold promise in light-activated editing strategies. Non-viral delivery systems, particularly those based on nanoparticles, stand out due to their inherent advantages. Collectively, the evidence paints a promising picture: nanoparticles are not merely passive carriers but active participants in the CRISPR/Cas9 delivery landscape. Their versatility, efficiency, and safety position them as key enablers of a future where gene editing can revolutionize drug development, offering personalized and targeted therapies for a wide range of diseases.

革命性的 CRISPR/Cas9 基因编辑技术在治疗遗传疾病和应对癌症等疾病方面具有巨大潜力。然而,高效给药仍然是一项重大挑战。这就是纳米颗粒发挥作用的地方,它是药物递送领域的强大盟友。纳米颗粒可以容纳更大的插入尺寸,从而能够加入更大的 Cas9 酶和复杂的引导 RNA,为编辑以前无法访问的基因区域提供了可能。它们的生产工艺相对简单且可扩展,使其在更广泛的应用中具有成本效益。值得注意的是,纳米颗粒在体内表现出色,具有高效的组织穿透性和靶向递送能力,这对于最大限度地提高治疗效果并减少副作用至关重要。本综述旨在探讨基于纳米颗粒的 CRISPR/Cas9 给药系统的潜力,突出它们在基因编辑应用中的优势和挑战。纳米颗粒的多样性进一步增强了它们的潜力。例如,聚合物纳米颗粒具有可调特性,可实现 CRISPR 货物的定制和可控释放。基于脂质的纳米颗粒可促进细胞的有效吸收和内泌体逃逸,确保 CRISPR 成分到达目标 DNA。即使是以其独特的生物相容性和光热特性而闻名的金纳米粒子,也有望用于光激活编辑策略。非病毒递送系统,尤其是基于纳米颗粒的系统,因其固有的优势而脱颖而出。总之,这些证据描绘了一幅充满希望的图景:纳米颗粒不仅仅是被动的载体,而是 CRISPR/Cas9 传输领域的积极参与者。它们的多功能性、高效性和安全性使其成为未来基因编辑彻底改变药物开发的关键推动力,为各种疾病提供个性化的靶向疗法。
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引用次数: 0
Equine MicroRNAs: Performance, Reproduction, and Disease. 马的MicroRNAs:性能、繁殖和疾病。
Pub Date : 2025-06-16 DOI: 10.2174/0122115366369721250606113102
Marcos Edgar Herkenhoff

MicroRNAs (miRNAs) are molecules that regulate gene expression by targeting the 3' untranslated region (UTR) of mRNAs. They are essential in numerous biological processes like growth, metabolism, and muscle development. miRNA research has become crucial in livestock breeding, offering solutions for improving animal health and productivity. This review focuses on miRNAs' roles in equine performance, reproduction, and disease, highlighting key findings and future applications in these areas. It discusses the use of circulating miRNAs (ci-miRNA) as biomarkers for athletic performance, particularly in endurance sports, by monitoring responses to exercise-induced stress and recovery. It also examines miRNAs involved in reproductive health, such as those influencing endometritis, oocyte maturation, and embryo development. In terms of disease, miRNAs are highlighted as potential biomarkers for osteoarthritis and sarcoids, offering insights into early diagnosis and treatment. Overall, the review emphasizes the promise of miR-NAs in improving equine care through personalized diagnostics and therapeutic approaches.

MicroRNAs (miRNAs)是通过靶向mrna的3'非翻译区(UTR)调控基因表达的分子。它们在许多生物过程中都是必不可少的,比如生长、新陈代谢和肌肉发育。miRNA研究已成为家畜育种的关键,为提高动物健康和生产力提供了解决方案。本文综述了mirna在马的性能、繁殖和疾病中的作用,重点介绍了这些领域的主要发现和未来应用。它讨论了循环mirna (ci-miRNA)作为运动表现的生物标志物的使用,特别是在耐力运动中,通过监测对运动引起的压力和恢复的反应。它还研究了与生殖健康有关的mirna,如影响子宫内膜炎、卵母细胞成熟和胚胎发育的mirna。在疾病方面,mirna被强调为骨关节炎和肉瘤的潜在生物标志物,为早期诊断和治疗提供见解。总体而言,该综述强调了miR-NAs在通过个性化诊断和治疗方法改善马护理方面的前景。
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引用次数: 0
Exploring the Role of Non-Coding RNAs in the Gut and Skin Microbiome: Implications for Colorectal Cancer and Healthy Longevity. 探索非编码rna在肠道和皮肤微生物组中的作用:对结直肠癌和健康长寿的影响。
Pub Date : 2025-04-08 DOI: 10.2174/0122115366342509250401043719
Soumya V S, Chaithra Prasad, Sreejith Parameswara Panicker

In the last forty years, cancer mortality rates have risen by more than 40%, with colo-rectal cancer (CRC) ranking as the third most common kind worldwide, significantly affected by dietary factors. Restricted access to sophisticated medical treatment and insufficient comprehen-sion of colorectal cancer's biology contribute to its elevated occurrence. Researchers have recog-nized dysbiosis of the gut microbiome as a critical contributor to the development of colorectal cancer, as it influences the expression of non-coding RNAs (ncRNAs) and subsequent molecular pathways essential for tumor proliferation. Moreover, interactions between gut and skin microbi-ota can impact systemic health and ncRNA regulation, influencing CRC advancement. This study shows how important the gut-skin microbiome axis is in developing colorectal cancer. It suggests that targeting this axis may lead to new treatments, such as changing the microbiome through probiotics, prebiotics, or fecal microbiota transplantation. Nonetheless, we must address obstacles such as population heterogeneity and intricate microbiome-host interactions to facilitate the tran-sition of these medicines into clinical practice. This study seeks to elucidate the roles of dietary treatments, microbiomes, and ncRNAs in the etiology and prevention of colorectal cancer (CRC).

在过去的40年里,癌症死亡率上升了40%以上,其中结直肠癌(CRC)是世界上第三大最常见的癌症,受饮食因素的影响很大。难以获得先进的医学治疗和对结直肠癌生物学的了解不足是导致其发病率升高的原因。研究人员已经认识到肠道微生物群的生态失调是结直肠癌发展的关键因素,因为它影响非编码rna (ncRNAs)的表达和肿瘤增殖所必需的后续分子途径。此外,肠道和皮肤微生物群之间的相互作用可以影响全身健康和ncRNA调节,从而影响结直肠癌的进展。这项研究表明肠道-皮肤微生物群轴在结直肠癌的发展中是多么重要。这表明,针对这一轴可能会带来新的治疗方法,例如通过益生菌、益生元或粪便微生物群移植来改变微生物群。尽管如此,我们必须解决诸如群体异质性和复杂的微生物-宿主相互作用等障碍,以促进这些药物进入临床实践。本研究旨在阐明饮食治疗、微生物组和ncrna在结直肠癌(CRC)病因和预防中的作用。
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引用次数: 0
Role of Exosomal Non-Coding RNAs In Vivo and In Vitro Studies in Colorectal Cancer. 外泌体非编码rna在结直肠癌体内和体外研究中的作用
Pub Date : 2025-03-18 DOI: 10.2174/0122115366331268250303031240
Mohamed Y Zaky, Hadeer M Hamdalla

Colorectal Cancer (CRC) is the third most lethal cancer worldwide. Complex intercel-lular communication within the tumor microenvironment influences cancer progression, thera-peutic resistance, with Exosomes (Exos) and Circulating Extracellular Vesicles (EVs) playing a critical role in this communication. Exosomes can impact recipient cells by carrying various bio-molecules, promoting changes that support cancer progression. This review focuses specifically on exosome-derived noncoding RNAs (ncRNAs) in CRC, including microRNAs (miRNAs]), circular RNAs (circRNAs), and long noncoding RNAs (lncRNAs), as significant regulators of cancer biology. The roles of these exosomal ncRNAs in CRC are central to tumor progression, metastasis, and treatment resistance. This review delves into specific molecular mechanisms, such as exosomal lncRNA H19, which enhances CRC chemoresistance by activating the β-catenin pathway, and exo-miR-21, which is implicated in 5-FU chemoresistance. We also high-light emerging evidence on exosomal circRNAs like circ_0006174, linked to doxorubicin re-sistance through miR-1205/CCND2 axis modulation. These exo-ncRNAs have shown promise as biomarkers and potential therapeutic targets, with studies indicating their diagnostic and prog-nostic capabilities in CRC patient cohorts. By examining recent in vivo and in vitro studies, we offer a comprehensive understanding of exosomal ncRNAs' roles in CRC pathogenesis and po-tential applications in clinical trials.

结直肠癌(CRC)是全球第三大致命癌症。肿瘤微环境中复杂的细胞间通讯影响癌症的进展和治疗耐药性,外泌体(Exos)和循环细胞外囊泡(EVs)在这种通讯中起着关键作用。外泌体可以通过携带各种生物分子影响受体细胞,促进支持癌症进展的变化。本综述特别关注CRC中外泌体衍生的非编码rna (ncRNAs),包括作为癌症生物学重要调节因子的microRNAs (miRNAs)、环状rna (circRNAs)和长链非编码rna (lncRNAs)。这些外泌体ncrna在结直肠癌中的作用是肿瘤进展、转移和治疗耐药的核心。这篇综述深入探讨了特定的分子机制,如外泌体lncRNA H19,它通过激活β-catenin途径增强CRC的化疗耐药,以及外泌体mir -21,它与5-FU的化疗耐药有关。我们还强调了外泌体环状rna(如circ_0006174)通过miR-1205/CCND2轴调节与阿霉素耐药相关的新证据。这些exo- ncrna已显示出作为生物标志物和潜在治疗靶点的前景,研究表明它们在结直肠癌患者群体中的诊断和预后能力。通过检查最近的体内和体外研究,我们全面了解了外泌体ncRNAs在结直肠癌发病机制中的作用以及在临床试验中的潜在应用。
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引用次数: 0
MicroRNA-Mediated Regulation of Cancer Stem Cells: Implications for Radioresistance and Chemoresistance in Cancer Treatment. microrna介导的肿瘤干细胞调控:肿瘤治疗中放射耐药和化疗耐药的意义。
Pub Date : 2025-02-19 DOI: 10.2174/0122115366300151250107091224
Vasanth Kanth Thasma Loganathbabu, Harin N Ganesh, Ravi Gor, Kandasamy Nagarajan Aruljothi, Satish Ramalingam

MicroRNAs (miRNAs) are a class of noncoding RNAs that regulate gene expression in cancer cells and Cancer Stem Cells (CSCs), and play an indispensable role in the development of resistance to radiotherapy and chemotherapy in cancer treatment. The dysregulation of miRNAs in CSCs plays a vital role in influencing the features of CSCs and their resistance mechanisms in different forms of cancer. These miRNAs are also engaged in regulating important signaling pathways, such as Notch and Wnt, which have an impact on the behavior of CSCs and their response to treatment. The intricate network of miRNAs and their interactions with essential proteins and major pathways highlight their potential as therapeutic targets for controlling cancer stem cell behavior and improving the outcomes of cancer therapy by understanding their effects. Comprehending the complex relationship among the production of microRNA, the environment surrounding the tumor, and the processes by which cells communicate can provide vital knowledge for developing successful treatments to overcome resistance to chemotherapy and radiation in cancer therapy.

MicroRNAs (miRNAs)是一类调节癌细胞和癌症干细胞(cancer Stem cells, CSCs)基因表达的非编码rna,在癌症治疗中对放化疗耐药的发展起着不可或缺的作用。在不同形式的癌症中,CSCs中mirna的失调在影响CSCs的特征及其耐药机制方面起着至关重要的作用。这些mirna还参与调节重要的信号通路,如Notch和Wnt,这些信号通路对CSCs的行为及其对治疗的反应有影响。mirna的复杂网络及其与必需蛋白和主要通路的相互作用突出了它们作为控制癌症干细胞行为和通过了解其作用改善癌症治疗结果的治疗靶点的潜力。了解microRNA的产生、肿瘤周围环境和细胞交流过程之间的复杂关系,可以为开发成功的治疗方法提供重要的知识,以克服癌症治疗中化疗和放疗的耐药性。
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引用次数: 0
Revealing miRNAs' Janus-Faced Nature: Transforming Cold Tumours into Immunotherapy Hotspots and Overcoming Chemoresistance. 揭示miRNAs的双面性质:将冷肿瘤转化为免疫治疗热点并克服化疗耐药。
Pub Date : 2025-01-29 DOI: 10.2174/0122115366340113241216043551
Shinjini Sen, Ranu Nayak, Banashree Bondhopadhyay, Sudeep Bose

MicroRNA (miRNA) modulation has emerged as a promising strategy in cancer immunotherapy, particularly in converting "cold" tumors with limited immune cell infiltration into "hot" tumors responsive to immunotherapy. miRNAs regulate immune cell recruitment and activation within the tumor microenvironment, influencing tumor behavior targeting specific miRNAs in cold tumors aims to enhance the immune response, potentially improving therapeutic efficacy. Despite ongoing research challenges, such as tumor complexity and treatment resistance, miRNA-based therapies offer personalized approaches with potential ethical considerations. Advances in miRNA profiling may enable early cancer detection and tailored treatments, underscoring its role in future oncology. This review sheds light on the role of miRNA in cold and hot tumor microenvironments, how they modulate depending on the tumor niche and the current research challenges in implementing miRNA-based therapies include the complexity of tumors and their heterogeneity, which makes it difficult to identify the most relevant miRNAs to target. Additionally, treatment resistance can develop over time, reducing the effectiveness of miRNA modulation. Despite these challenges, ongoing research and advancements in miRNA profiling hold promise for overcoming these obstacles and improving the outcomes of cancer immunotherapy. To overcome the challenges of identifying relevant miRNAs to target, researchers can employ high-throughput sequencing techniques to comprehensively profile miRNA expression in different tumor subtypes. They can also utilize bioinformatics tools and databases to analyze the vast amount of miRNA-related data and identify potential candidate miRNAs. Furthermore, collaborations between scientists and clinicians can help validate the functional significance of identified miRNAs and their potential as therapeutic targets.

MicroRNA (miRNA)调节已成为癌症免疫治疗中一种很有前途的策略,特别是在将免疫细胞浸润有限的“冷”肿瘤转化为对免疫治疗有反应的“热”肿瘤方面。miRNAs调节肿瘤微环境中免疫细胞的募集和激活,影响冷肿瘤中针对特定miRNAs的肿瘤行为,旨在增强免疫应答,潜在地提高治疗效果。尽管正在进行的研究挑战,如肿瘤的复杂性和治疗耐药性,基于mirna的治疗提供了个性化的方法,潜在的伦理考虑。miRNA分析的进展可能使早期癌症检测和定制治疗成为可能,强调其在未来肿瘤学中的作用。这篇综述揭示了miRNA在冷和热肿瘤微环境中的作用,它们如何根据肿瘤生态位进行调节,以及目前实施基于miRNA的治疗的研究挑战,包括肿瘤的复杂性及其异质性,这使得难以确定最相关的miRNA靶向。此外,治疗耐药性会随着时间的推移而发展,降低miRNA调节的有效性。尽管存在这些挑战,但miRNA分析的持续研究和进展有望克服这些障碍并改善癌症免疫治疗的结果。为了克服识别相关miRNA的挑战,研究人员可以采用高通量测序技术来全面分析不同肿瘤亚型中miRNA的表达。他们还可以利用生物信息学工具和数据库分析大量与mirna相关的数据,并识别潜在的候选mirna。此外,科学家和临床医生之间的合作可以帮助验证已鉴定的mirna的功能意义及其作为治疗靶点的潜力。
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引用次数: 0
Identification of Hub Genes and Analysis of their Regulatory miRNAs in Patients with Thymoma Associated Myasthenia Gravis Based on TCGA Database. 基于 TCGA 数据库鉴定胸腺瘤相关性肌无力患者的枢纽基因并分析其调控 miRNA。
Pub Date : 2025-01-01 DOI: 10.2174/0122115366299210240823062457
Wei Zhou, Jia Hu, Jun Nie

Background: Myasthenia gravis is an autoimmune disease, and 30% of patients with thymoma often have myasthenia gravis. Patients with thymoma-associated MG (TAMG) have many different clinical presentations compared to non-MG thymoma (NMG), yet their gene expression differences remain unclear.

Objective: In this study, we analyzed the Differentially Expressed Genes (DEGs) and analyzed their regulatory microRNAs (miRNAs) in TAMG, which will further clarify the possible pathogenesis of TAMG.

Methods: DEGs were calculated using the RNA-sequencing data of TAMG and NMG downloaded from The Cancer Genome Atlas (TCGA) database. R software was then used to analyze the gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways of DEGs, while STRING was applied to build the protein-protein interaction (PPI) network and Cytoscape to identify and visualize the hub genes. Immune infiltration significances of hub genes were also explored by using the TIMER database and TCGA database. Upstream microRNAs (miRNAs) of the hub genes were predicted by online software.

Results: We comparatively analyzed the gene expression differences between TAMG and NMG groups. A total of 977 DEGs were identified between the two groups (|log fold change (FC)| >2, adjusted P value <0.050), with 555 down-regulated genes and 422 up-regulated genes. Five top hub genes (CTNNB1, EGFR, SOX2, ERBB2, and EGF) were recognized in the PPI network. Analysis based on the TIMER and TCGA databases suggested that 5 hub genes were correlated with multiple immune cell infiltrations and immune checkpoint-related markers, such as PDCD1, CTLA-4, and CD274, in TAMG patients. Lastly, 5 miRNAs were identified to have the potential function of regulating the hub gene expression.

Conclusion: Our study identified 5 hub genes (CTNNB1, EGFR, SOX2, ERBB2, and EGF) and their 5 regulatory miRNAs in TAMG, and the hub genes were correlated with multiple immune cell infiltrations and immune checkpoint-related markers. Our findings could help partially clarify the pathophysiology of TAMG, which could be new potential targets for subsequent clinical immunotherapy.

背景:重症肌无力是一种自身免疫性疾病,30%的胸腺瘤患者通常伴有重症肌无力。胸腺瘤相关肌萎缩症(TAMG)患者的临床表现与非肌萎缩症胸腺瘤(NMG)相比有许多不同之处,但其基因表达差异仍不清楚:本研究分析了TAMG的差异表达基因(DEGs),并分析了其调控微RNAs(miRNAs),这将进一步阐明TAMG可能的发病机制:利用从癌症基因组图谱(TCGA)数据库下载的TAMG和NMG的RNA测序数据计算DEGs。然后用R软件分析DEGs的基因本体(GO)和京都基因组百科全书(KEGG)通路,用STRING构建蛋白-蛋白相互作用(PPI)网络,用Cytoscape识别和可视化枢纽基因。此外,还利用TIMER数据库和TCGA数据库探讨了中心基因的免疫浸润意义。通过在线软件预测了枢纽基因的上游微RNA(miRNA):我们比较分析了TAMG组和NMG组的基因表达差异。结果:我们比较分析了 TAMG 组和 NMG 组的基因表达差异,发现两组间共有 977 个 DEGs(log fold change (FC)| >2, adjusted P value 结论):我们的研究发现了TAMG中的5个中枢基因(CTNNB1、表皮生长因子受体、SOX2、ERBB2和EGF)及其5个调控miRNA,这些中枢基因与多种免疫细胞浸润和免疫检查点相关标志物相关。我们的发现有助于部分阐明TAMG的病理生理学,这可能成为后续临床免疫疗法的潜在新靶点。
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MicroRNA (Shariqah, United Arab Emirates)
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