首页 > 最新文献

MicroRNA (Shariqah, United Arab Emirates)最新文献

英文 中文
Exercise Alters FBF1-Regulated Novel-miRNA-1135 Associated with Hydrolethalus Syndrome 1 in Rheumatoid Arthritis: A Preliminary Study. 运动可改变类风湿性关节炎患者与水肿综合征 1 相关的 FBF1 调节的新型 miRNA-1135:初步研究
Pub Date : 2024-07-03 DOI: 10.2174/0122115366294831240606115216
Vimolmas Tansathitaya, Witchana Sarasin, Tanapati Phakham, Vorthon Sawaswong, Prangwalai Chanchaem, Sunchai Payungporn

Background: Hydrolethalus Syndrome 1 (HYDS1) is a rare disorder that occurs commonly in Finnish infants but originates from the mother. This autosomal recessive syn-drome is associated with the FBF1, which is usually expressed in the centriole. The FBF1 is an inheritable arthritis disease phenotype that includes rheumatoid arthritis. Several studies have investigated males with FBF1 mutation carriers also related to arthritis diseases, including those under rheumatoid arthritis conditions, which revealed the possibility of conferring the gene mutation to the next generation of offspring. Nonetheless, there are some complications of FBF1 mutation with target miRNAs that can be affected by exercise.

Objective: The objective of this study was to evaluate the different exercises that can be utilized to suppress the FBF1 mutation targeted by Novel-rno-miRNAs-1135 as a biomarker and assess the effectiveness of exercise in mitigating the FBF1 mutation.

Methods: Four exercise interventional groups were divided into exercise and non-exercise groups. One hundred microliter pristane-induced arthritis (PIA) was injected at the dorsal re-gion of the tails of rodents and introduced to the two PIA interventional groups. On day forty-five, all animals were euthanized, and total RNA was extracted from the blood samples of ro-dents, while polymerase chain reaction (PCR) was amplified by using 5-7 primers. Computeri-zation was used for miRNA regulation and analysis of target gene candidates.

Results: The novel-rno-miRNA-1135 was downregulated to FBF1 in exercise groups. The exercise was found to have no significant impact in terms of change in novel-rno-miRNA-1135 regulation of FBF1 expression.

Conclusion: Exercise has no impact on novel-rno-miRNA-1135 targeted for FBF1 in autoso-mal recessive disease.

背景:水瘤综合征 1(Hydrolethalus Syndrome 1,HYDS1)是一种罕见的疾病,常见于芬兰婴儿,但遗传自母亲。这种常染色体隐性遗传综合征与 FBF1 有关,FBF1 通常在中心粒中表达。FBF1 是一种可遗传的关节炎疾病表型,包括类风湿性关节炎。有几项研究对 FBF1 基因突变携带者的男性进行了调查,这些携带者也与关节炎疾病有关,其中包括类风湿性关节炎患者,这些研究揭示了将基因突变遗传给下一代的可能性。然而,FBF1 基因突变与目标 miRNAs 之间存在一些并发症,运动会对其产生影响:本研究的目的是评估可用于抑制作为生物标记物的 Novel-rno-miRNAs-1135 靶向 FBF1 基因突变的不同运动,并评估运动对减轻 FBF1 基因突变的效果:方法:四个运动干预组分为运动组和非运动组。方法:四个运动干预组分为运动组和非运动组,在啮齿动物的尾部背侧区域注射 100 微升普里斯坦诱导的关节炎(PIA),并将其引入两个 PIA 干预组。第 45 天,所有动物安乐死,从啮齿动物的血样中提取总 RNA,并使用 5-7 种引物进行聚合酶链反应(PCR)扩增。结果表明,新-no-miRNA对啮齿类动物的调控和靶基因候选分析具有重要意义:结果:在运动组中,novel-rno-miRNA-1135下调至FBF1。结论:运动对新miRNA-1135调控FBF1的表达没有显著影响:结论:运动对自体隐性疾病中 FBF1 靶向的 novel-rno-miRNA-1135 没有影响。
{"title":"Exercise Alters FBF1-Regulated Novel-miRNA-1135 Associated with Hydrolethalus Syndrome 1 in Rheumatoid Arthritis: A Preliminary Study.","authors":"Vimolmas Tansathitaya, Witchana Sarasin, Tanapati Phakham, Vorthon Sawaswong, Prangwalai Chanchaem, Sunchai Payungporn","doi":"10.2174/0122115366294831240606115216","DOIUrl":"https://doi.org/10.2174/0122115366294831240606115216","url":null,"abstract":"<p><strong>Background: </strong>Hydrolethalus Syndrome 1 (HYDS1) is a rare disorder that occurs commonly in Finnish infants but originates from the mother. This autosomal recessive syn-drome is associated with the FBF1, which is usually expressed in the centriole. The FBF1 is an inheritable arthritis disease phenotype that includes rheumatoid arthritis. Several studies have investigated males with FBF1 mutation carriers also related to arthritis diseases, including those under rheumatoid arthritis conditions, which revealed the possibility of conferring the gene mutation to the next generation of offspring. Nonetheless, there are some complications of FBF1 mutation with target miRNAs that can be affected by exercise.</p><p><strong>Objective: </strong>The objective of this study was to evaluate the different exercises that can be utilized to suppress the FBF1 mutation targeted by Novel-rno-miRNAs-1135 as a biomarker and assess the effectiveness of exercise in mitigating the FBF1 mutation.</p><p><strong>Methods: </strong>Four exercise interventional groups were divided into exercise and non-exercise groups. One hundred microliter pristane-induced arthritis (PIA) was injected at the dorsal re-gion of the tails of rodents and introduced to the two PIA interventional groups. On day forty-five, all animals were euthanized, and total RNA was extracted from the blood samples of ro-dents, while polymerase chain reaction (PCR) was amplified by using 5-7 primers. Computeri-zation was used for miRNA regulation and analysis of target gene candidates.</p><p><strong>Results: </strong>The novel-rno-miRNA-1135 was downregulated to FBF1 in exercise groups. The exercise was found to have no significant impact in terms of change in novel-rno-miRNA-1135 regulation of FBF1 expression.</p><p><strong>Conclusion: </strong>Exercise has no impact on novel-rno-miRNA-1135 targeted for FBF1 in autoso-mal recessive disease.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141499234","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Effect of MiR320a on Lung Cancer. MiR320a 对肺癌的影响
Pub Date : 2024-07-03 DOI: 10.2174/0122115366296148240530072346
Arian Hasani

Lung cancer has a high mortality rate among cancers in both women and men. Currently, lung cáncer diagnosis is made with clinical examination, low-dose CT scan and molecular-based methods and its treatment options include chemotherapy, surgery, radiotherapy or immunotherapy. However, the life expectancy of lung cancer is not very high, and still it is usually diagnosed very lately, which leads to poorer prognosis. MicroRNAs [miRNAs] are small noncoding RNAs that regulate many diverse activities in the cell that can affect tumorigenesis by regulating many cell functions related to cancer, such as cell cycle, metastasis, angiogenesis, me-tabolism, and apoptosis. Also, it can have a potential diagnostic, therapeutic, and prognostic value for lung cancer. MiR320a is a promising microRNA that may help us in the diagnosis, treatment and prognosis of lung cancer, but some aspects of its clinical application are still vague, especially its effect on heavy smokers, delivery mechanism, toxicity and lack of reliable critical value. In this paper, we examined its comprehensive molecular interactions that lead to its tumor suppres-sor effect, and we reviewed its clinical application until now.

肺癌在男女癌症中的死亡率都很高。目前,肺癌的诊断主要通过临床检查、低剂量 CT 扫描和分子方法,治疗方法包括化疗、手术、放疗或免疫治疗。然而,肺癌的预期寿命并不长,而且通常很晚才被确诊,因此预后较差。微小核糖核酸(miRNA)是一种小型非编码核糖核酸,可调控细胞内的多种活动,通过调控细胞周期、转移、血管生成、代谢和凋亡等多种与癌症相关的细胞功能来影响肿瘤的发生。此外,它还对肺癌具有潜在的诊断、治疗和预后价值。MiR320a是一种很有前景的微RNA,可帮助我们诊断、治疗和预后肺癌,但其临床应用的某些方面仍很模糊,尤其是对重度吸烟者的影响、传递机制、毒性和缺乏可靠的临界值。在本文中,我们研究了导致其抑瘤作用的全面分子相互作用,并回顾了其迄今为止的临床应用。
{"title":"The Effect of MiR320a on Lung Cancer.","authors":"Arian Hasani","doi":"10.2174/0122115366296148240530072346","DOIUrl":"https://doi.org/10.2174/0122115366296148240530072346","url":null,"abstract":"<p><p>Lung cancer has a high mortality rate among cancers in both women and men. Currently, lung cáncer diagnosis is made with clinical examination, low-dose CT scan and molecular-based methods and its treatment options include chemotherapy, surgery, radiotherapy or immunotherapy. However, the life expectancy of lung cancer is not very high, and still it is usually diagnosed very lately, which leads to poorer prognosis. MicroRNAs [miRNAs] are small noncoding RNAs that regulate many diverse activities in the cell that can affect tumorigenesis by regulating many cell functions related to cancer, such as cell cycle, metastasis, angiogenesis, me-tabolism, and apoptosis. Also, it can have a potential diagnostic, therapeutic, and prognostic value for lung cancer. MiR320a is a promising microRNA that may help us in the diagnosis, treatment and prognosis of lung cancer, but some aspects of its clinical application are still vague, especially its effect on heavy smokers, delivery mechanism, toxicity and lack of reliable critical value. In this paper, we examined its comprehensive molecular interactions that lead to its tumor suppres-sor effect, and we reviewed its clinical application until now.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141499235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Review of the Different Outcomes Produced by Genetic Knock Out of the Long Non-coding microRNA-host-gene MIR22HG versus Pharmacologic Antagonism of its Intragenic microRNA product miR-22-3p. 回顾基因敲除长非编码 microRNA 宿主基因 MIR22HG 与药物拮抗其基因内 microRNA 产物 miR-22-3p 所产生的不同结果。
Pub Date : 2024-06-28 DOI: 10.2174/0122115366282339240604042154
Marc Thibonnier, Sujoy Ghosh

Background: Publications reveal different outcomes achieved by genetically knocking out a long non-coding microRNA-host-gene (lncMIRHG) versus the administration of pharma-cologic antagomirs specifically targeting the guide strand of such intragenic microRNA. This suggests that lncMIRHGs may perform diverse functions unrelated to their role as intragenic miRNA precursors.

Objective: This review synthesizes in silico, in vitro, and in vivo findings from our lab and others to compare the effects of knocking out the long non-coding RNA MIR22HG, which hosts miR-22, versus administering pharmacological antagomirs targeting miR-22-3p.

Methods: In silico analyses at the gene, pathway, and network levels reveal both distinct and overlapping targets of hsa-miR-22-3p and its host gene, MIR22HG. While pharmacological an-tagomirs targeting miR-22-3p consistently improve various metabolic parameters in cell culture and animal models across multiple studies, genetic knockout of MIR22HG yields inconsistent results among different research groups.

Results: Additionally, MIR22HG functions as a circulating endogenous RNA (ceRNA) or "sponge" that simultaneously modulates multiple miRNA-mRNA interactions by competing for binding to several miRNAs.

Conclusions: From a therapeutic viewpoint, genetic inactivation of a lncMIRHG and pharmaco-logic antagonism of the guide strand of its related intragenic miRNA produce different results. This should be expected as lncMIRHGs play dual roles, both as lncRNA and as a source for primary miRNA transcripts.

背景:有文献显示,基因敲除长非编码microRNA-host-基因(lncMIRHG)与服用特异性靶向这种基因内microRNA引导链的药物抗凝剂所取得的结果不同。这表明,lncMIRHGs可能具有与其作为基因内miRNA前体的作用无关的多种功能:本综述综合了我们实验室和其他实验室的硅学、体外和体内研究结果,比较了敲除宿主 miR-22 的长非编码 RNA MIR22HG 与施用靶向 miR-22-3p 的药理抗凝剂的效果:方法:在基因、通路和网络水平上进行的硅学分析表明,hsa-miR-22-3p 及其宿主基因 MIR22HG 的靶标既不同又重叠。在多项研究中,以 miR-22-3p 为靶点的药理标记物能持续改善细胞培养和动物模型中的各种代谢参数,而基因敲除 MIR22HG 在不同研究小组中产生的结果却不一致:此外,MIR22HG 作为一种循环内源性 RNA(ceRNA)或 "海绵",通过与多个 miRNA 竞争结合,同时调节多个 miRNA-mRNA 的相互作用:结论:从治疗的角度来看,lncMIRHG 的基因失活和相关基因内 miRNA 引导链的药物逻辑拮抗会产生不同的结果。这在意料之中,因为 lncMIRHG 具有双重作用,既是 lncRNA,又是主要 miRNA 转录本的来源。
{"title":"Review of the Different Outcomes Produced by Genetic Knock Out of the Long Non-coding microRNA-host-gene MIR22HG versus Pharmacologic Antagonism of its Intragenic microRNA product miR-22-3p.","authors":"Marc Thibonnier, Sujoy Ghosh","doi":"10.2174/0122115366282339240604042154","DOIUrl":"https://doi.org/10.2174/0122115366282339240604042154","url":null,"abstract":"<p><strong>Background: </strong>Publications reveal different outcomes achieved by genetically knocking out a long non-coding microRNA-host-gene (lncMIRHG) versus the administration of pharma-cologic antagomirs specifically targeting the guide strand of such intragenic microRNA. This suggests that lncMIRHGs may perform diverse functions unrelated to their role as intragenic miRNA precursors.</p><p><strong>Objective: </strong>This review synthesizes in silico, in vitro, and in vivo findings from our lab and others to compare the effects of knocking out the long non-coding RNA MIR22HG, which hosts miR-22, versus administering pharmacological antagomirs targeting miR-22-3p.</p><p><strong>Methods: </strong>In silico analyses at the gene, pathway, and network levels reveal both distinct and overlapping targets of hsa-miR-22-3p and its host gene, MIR22HG. While pharmacological an-tagomirs targeting miR-22-3p consistently improve various metabolic parameters in cell culture and animal models across multiple studies, genetic knockout of MIR22HG yields inconsistent results among different research groups.</p><p><strong>Results: </strong>Additionally, MIR22HG functions as a circulating endogenous RNA (ceRNA) or \"sponge\" that simultaneously modulates multiple miRNA-mRNA interactions by competing for binding to several miRNAs.</p><p><strong>Conclusions: </strong>From a therapeutic viewpoint, genetic inactivation of a lncMIRHG and pharmaco-logic antagonism of the guide strand of its related intragenic miRNA produce different results. This should be expected as lncMIRHGs play dual roles, both as lncRNA and as a source for primary miRNA transcripts.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141477639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Investigating the Association between LncRNA NR2F2-AS1, miR-320b, and BMI1 in Gastric Cancer: Insights into Expression Profiles as Potential Biomarkers for Disease Management. 调查胃癌中 LncRNA NR2F2-AS1、miR-320b 和 BMI1 之间的关联:洞察作为疾病管理潜在生物标记物的表达谱。
Pub Date : 2024-06-28 DOI: 10.2174/0122115366291818240606112725
Shadi Ghorbanzadeh, Navid Pourghasem, Roghayeh Amiz, Masoomeh Afsa, Kianoosh Malekzadeh

Aim: This study aims to investigate the potential role of lncRNA NR2F2-AS1 in the development of gastric cancer by affecting the levels of miR-320b and BMI1.

Background: Gastric cancer is a high-mortality malignancy, and understanding the underlying molecular mechanisms is crucial. Non-coding RNAs play an important role in gene expression, and their dysregulation can lead to tumor initiation and progression.

Objective: This study aims to determine the pathological role of LncRNA NR2F2-AS1 in gastric cancer progression and its association with the clinicopathological characteristics of patients.

Methods: Bioinformatics databases were used to predict the expression levels and interactions between the studied factors to achieve this objective. The expression pattern of NR2F2-AS1/miR- 320b/BMI1 in 40 pairs of tumor and adjacent normal tissues was examined using RT-PCR, IHC, and western blot. The correlation, ROC curve, and survival analyses were also conducted for the aforementioned factors.

Results: The results showed an increase of more than 2-fold for BMI-1 and lncRNA NR2F2-AS1 in lower stages, and the elevation continued with the increasing stage of the disease. This correlated with significant downregulation of miR-320b and PTEN, indicating their association with gastric cancer progression and decreased patient survival. LncRNA NR2F2-AS1 acts as an oncogene by influencing the level of miR-320b, altering the amount of BMI1. A reduction in the amount of miR-320b against lncRNA NR2F2-AS1 and BMI1 directly correlates with a reduced overall survival rate of patients, especially if this disproportion is more than 3.0. ROC curve analysis indicated that alteration in the lncRNA NR2F2-AS1 level showed more than 98.0% sensitivity and specificity to differentiate the lower from higher stages of GC and predict the early onset of metastasis.

Conclusion: In conclusion, these results suggest that NR2F2-AS1/miR-320b/BMI1 has the potential to be a prognostic as well as diagnostic biomarker for gastric cancer.

目的:本研究旨在通过影响miR-320b和BMI1的水平,探讨lncRNA NR2F2-AS1在胃癌发病中的潜在作用:背景:胃癌是一种高死亡率的恶性肿瘤,了解其潜在的分子机制至关重要。非编码 RNA 在基因表达中发挥着重要作用,其失调可导致肿瘤的发生和发展:本研究旨在确定 LncRNA NR2F2-AS1 在胃癌进展中的病理作用及其与患者临床病理特征的关联:为实现这一目标,研究人员利用生物信息学数据库预测了所研究因素的表达水平和相互作用。采用 RT-PCR、IHC 和 Western 印迹法检测了 40 对肿瘤和邻近正常组织中 NR2F2-AS1/miR- 320b/BMI1 的表达模式。此外,还对上述因素进行了相关性分析、ROC 曲线分析和生存分析:结果显示,BMI-1和lncRNA NR2F2-AS1在低分期时升高超过2倍,并随着疾病分期的增加而持续升高。这与 miR-320b 和 PTEN 的明显下调有关,表明它们与胃癌进展和患者生存率下降有关。LncRNA NR2F2-AS1通过影响miR-320b的水平,改变BMI1的数量,从而起到癌基因的作用。针对lncRNA NR2F2-AS1和BMI1的miR-320b数量的减少与患者总生存率的降低直接相关,尤其是当这一比例失调超过3.0时。ROC曲线分析表明,lncRNA NR2F2-AS1水平的改变在区分GC低分期和高分期以及预测早期转移方面的敏感性和特异性均超过98.0%:总之,这些结果表明,NR2F2-AS1/miR-320b/BMI1有可能成为胃癌的预后和诊断生物标志物。
{"title":"Investigating the Association between LncRNA NR2F2-AS1, miR-320b, and BMI1 in Gastric Cancer: Insights into Expression Profiles as Potential Biomarkers for Disease Management.","authors":"Shadi Ghorbanzadeh, Navid Pourghasem, Roghayeh Amiz, Masoomeh Afsa, Kianoosh Malekzadeh","doi":"10.2174/0122115366291818240606112725","DOIUrl":"10.2174/0122115366291818240606112725","url":null,"abstract":"<p><strong>Aim: </strong>This study aims to investigate the potential role of lncRNA NR2F2-AS1 in the development of gastric cancer by affecting the levels of miR-320b and BMI1.</p><p><strong>Background: </strong>Gastric cancer is a high-mortality malignancy, and understanding the underlying molecular mechanisms is crucial. Non-coding RNAs play an important role in gene expression, and their dysregulation can lead to tumor initiation and progression.</p><p><strong>Objective: </strong>This study aims to determine the pathological role of LncRNA NR2F2-AS1 in gastric cancer progression and its association with the clinicopathological characteristics of patients.</p><p><strong>Methods: </strong>Bioinformatics databases were used to predict the expression levels and interactions between the studied factors to achieve this objective. The expression pattern of NR2F2-AS1/miR- 320b/BMI1 in 40 pairs of tumor and adjacent normal tissues was examined using RT-PCR, IHC, and western blot. The correlation, ROC curve, and survival analyses were also conducted for the aforementioned factors.</p><p><strong>Results: </strong>The results showed an increase of more than 2-fold for BMI-1 and lncRNA NR2F2-AS1 in lower stages, and the elevation continued with the increasing stage of the disease. This correlated with significant downregulation of miR-320b and PTEN, indicating their association with gastric cancer progression and decreased patient survival. LncRNA NR2F2-AS1 acts as an oncogene by influencing the level of miR-320b, altering the amount of BMI1. A reduction in the amount of miR-320b against lncRNA NR2F2-AS1 and BMI1 directly correlates with a reduced overall survival rate of patients, especially if this disproportion is more than 3.0. ROC curve analysis indicated that alteration in the lncRNA NR2F2-AS1 level showed more than 98.0% sensitivity and specificity to differentiate the lower from higher stages of GC and predict the early onset of metastasis.</p><p><strong>Conclusion: </strong>In conclusion, these results suggest that NR2F2-AS1/miR-320b/BMI1 has the potential to be a prognostic as well as diagnostic biomarker for gastric cancer.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141477638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Role of Long Noncoding RNAs in Progression of Leukemia: Based on Chromosomal Location. 长非编码 RNA 在白血病进展中的作用:基于染色体位置
Pub Date : 2024-01-01 DOI: 10.2174/0122115366265540231201065341
Fatemeh Sabaghi, Saina Yousefi Sadat, Zohreh Mirsaeedi, Aref Salahi, Sara Vazifehshenas, Neda Zahmat Kesh, Mahdieh Balavar, Pegah Ghoraeian

Long non-coding RNA [LncRNA] dysregulation has been seen in many human cancers, including several kinds of leukemia, which is still a fatal disease with a poor prognosis. LncRNAs have been demonstrated to function as tumor suppressors or oncogenes in leukemia. This study covers current research findings on the role of lncRNAs in the prognosis and diagnosis of leukemia. Based on recent results, several lncRNAs are emerging as biomarkers for the prognosis, diagnosis, and even treatment outcome prediction of leukemia and have been shown to play critical roles in controlling leukemia cell activities, such as proliferation, cell death, metastasis, and drug resistance. As a result, lncRNA profiles may have superior predictive and diagnostic potential in leukemia. Accordingly, this review concentrates on the significance of lncRNAs in leukemia progression based on their chromosomal position.

长非编码 RNA [LncRNA] 失调在许多人类癌症中都有发现,其中包括几种白血病,而白血病仍然是一种预后不良的致命疾病。已证实 LncRNA 在白血病中可作为肿瘤抑制因子或致癌基因发挥作用。本研究涵盖了目前关于 lncRNA 在白血病预后和诊断中的作用的研究成果。根据最近的研究结果,一些 lncRNAs 正在成为白血病预后、诊断甚至治疗结果预测的生物标志物,并已被证明在控制白血病细胞活动(如增殖、细胞死亡、转移和耐药性)方面发挥关键作用。因此,lncRNA 图谱在白血病中可能具有卓越的预测和诊断潜力。因此,本综述根据染色体位置集中探讨了 lncRNA 在白血病进展中的意义。
{"title":"The Role of Long Noncoding RNAs in Progression of Leukemia: Based on Chromosomal Location.","authors":"Fatemeh Sabaghi, Saina Yousefi Sadat, Zohreh Mirsaeedi, Aref Salahi, Sara Vazifehshenas, Neda Zahmat Kesh, Mahdieh Balavar, Pegah Ghoraeian","doi":"10.2174/0122115366265540231201065341","DOIUrl":"10.2174/0122115366265540231201065341","url":null,"abstract":"<p><p>Long non-coding RNA [LncRNA] dysregulation has been seen in many human cancers, including several kinds of leukemia, which is still a fatal disease with a poor prognosis. LncRNAs have been demonstrated to function as tumor suppressors or oncogenes in leukemia. This study covers current research findings on the role of lncRNAs in the prognosis and diagnosis of leukemia. Based on recent results, several lncRNAs are emerging as biomarkers for the prognosis, diagnosis, and even treatment outcome prediction of leukemia and have been shown to play critical roles in controlling leukemia cell activities, such as proliferation, cell death, metastasis, and drug resistance. As a result, lncRNA profiles may have superior predictive and diagnostic potential in leukemia. Accordingly, this review concentrates on the significance of lncRNAs in leukemia progression based on their chromosomal position.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139564359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Expression of Hsa-Mir-1225-5p Limits the Aggressive Biological Behaviour of Luminal Breast Cancer Cell Lines. Hsa-Mir-1225-5p 的表达限制了乳腺癌细胞株的侵袭性生物学行为
Pub Date : 2024-01-01 DOI: 10.2174/0122115366268128231201054005
Y-Andrés Hernandez, Janeth Gonzalez, Reggie Garcia, Andrés Aristizabal-Pachón

Introduction: Numerous genetic and biological processes have been linked to the function of microRNAs (miRNAs), which regulate gene expression by targeting messenger RNA (mRNA). It is commonly acknowledged that miRNAs play a role in the development of disease and the embryology of mammals.

Method: To further understand its function in the oncogenic process, the expression of the miRNA profile in cancer has been investigated. Despite being referred to as a noteworthy miRNA in cancer, it is unknown whether hsa-miR-1225-5p plays a part in the in vitro progression of the luminal A and luminal B subtypes of breast cancer. We proposed that a synthetic hsa-miR-1225-5p molecule be expressed in breast cancer cell lines and its activity be evaluated with the aim of studying its function in the development of luminal breast cancer. In terms of the typical cancer progression stages, such as proliferation, survival, migration, and invasion, we investigated the role of hsa-miR-1225-5p in luminal A and B breast cancer cell lines.

Results: Additionally, using bioinformatics databases, we thoroughly explored the target score-based prediction of miRNA-mRNA interaction. Our study showed that the expression of miR-1225-5p significantly inhibited the in vitro growth of luminal A and B breast cancer cell lines.

Conclusion: The results were supported by a bioinformatic analysis and a detailed gene network that boosts the activation of signaling pathways required for cancer progression.

导言:许多遗传和生物过程都与微小RNA(miRNA)的功能有关,miRNA通过靶向信使RNA(mRNA)来调节基因表达。人们普遍认为,miRNA 在哺乳动物的疾病发展和胚胎学中发挥作用:为了进一步了解 miRNA 在致癌过程中的功能,我们对 miRNA 在癌症中的表达谱进行了研究。尽管hsa-miR-1225-5p被称为癌症中值得注意的miRNA,但它是否在乳腺癌腔内A亚型和腔内B亚型的体外进展中发挥作用尚不清楚。我们建议在乳腺癌细胞系中表达合成的 hsa-miR-1225-5p 分子,并评估其活性,以研究其在管腔型乳腺癌发展过程中的功能。从增殖、生存、迁移和侵袭等典型的癌症进展阶段来看,我们研究了 hsa-miR-1225-5p 在管腔型 A 型和 B 型乳腺癌细胞系中的作用:此外,我们还利用生物信息学数据库,深入探讨了基于目标得分的 miRNA 与 MRNA 相互作用的预测。我们的研究表明,miR-1225-5p 的表达能显著抑制管腔 A 型和 B 型乳腺癌细胞系的体外生长:结果得到了生物信息学分析和详细基因网络的支持,该网络促进了癌症进展所需的信号通路的激活。
{"title":"The Expression of Hsa-Mir-1225-5p Limits the Aggressive Biological Behaviour of Luminal Breast Cancer Cell Lines.","authors":"Y-Andrés Hernandez, Janeth Gonzalez, Reggie Garcia, Andrés Aristizabal-Pachón","doi":"10.2174/0122115366268128231201054005","DOIUrl":"10.2174/0122115366268128231201054005","url":null,"abstract":"<p><strong>Introduction: </strong>Numerous genetic and biological processes have been linked to the function of microRNAs (miRNAs), which regulate gene expression by targeting messenger RNA (mRNA). It is commonly acknowledged that miRNAs play a role in the development of disease and the embryology of mammals.</p><p><strong>Method: </strong>To further understand its function in the oncogenic process, the expression of the miRNA profile in cancer has been investigated. Despite being referred to as a noteworthy miRNA in cancer, it is unknown whether hsa-miR-1225-5p plays a part in the <i>in vitro</i> progression of the luminal A and luminal B subtypes of breast cancer. We proposed that a synthetic hsa-miR-1225-5p molecule be expressed in breast cancer cell lines and its activity be evaluated with the aim of studying its function in the development of luminal breast cancer. In terms of the typical cancer progression stages, such as proliferation, survival, migration, and invasion, we investigated the role of hsa-miR-1225-5p in luminal A and B breast cancer cell lines.</p><p><strong>Results: </strong>Additionally, using bioinformatics databases, we thoroughly explored the target score-based prediction of miRNA-mRNA interaction. Our study showed that the expression of miR-1225-5p significantly inhibited the <i>in vitro</i> growth of luminal A and B breast cancer cell lines.</p><p><strong>Conclusion: </strong>The results were supported by a bioinformatic analysis and a detailed gene network that boosts the activation of signaling pathways required for cancer progression.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11348466/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139418271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Downregulation of Serum miR-133b and miR-206 Associate with Clinical Outcomes of Progression as Monitoring Biomarkers for Metastasis Colorectal Cancer Patients. 血清 miR-133b 和 miR-206 的下调与临床进展结果相关,可作为监测转移性结直肠癌患者的生物标记物
Pub Date : 2024-01-01 DOI: 10.2174/0122115366266024240101075745
Surasak Wanram, Namphon Klaewkla, Parichart Pinyosri

Background: Colorectal cancer (CRC) is the third most common cancer in the world. Noncoding RNAs or microRNAs (miRNAs; miRs) biomarkers can play a role in cancer carcinogenesis and progression. Specific KRAS and EGFR mutation are associated with CRC development playing a role in controlling the cellular process as epigenetic events. Circulating serum miRs can serve for early diagnosis, monitoring, and prognosis of CRC as biomarkers but it is still unclear, clinically.

Objective: To determine potential biomarkers of circulating serum miR-133b and miR-206 in CRC patients Methods: Bioinformatic prediction of microRNA was screened followed by TargetScanHuman7.2, miRTar2GO, miRDB, MiRanda, and DIANA-microT-CDS. Forty-four CRC serum (19 locally advanced, 23 distant advanced CRC) and 12 normal serum samples were subsequently extracted for RNA isolation, cDNA synthesis, and miR validation. The candidate circulating serum miR-133b and miR-206 were validated resulting in a relative expression via quantitative RT-PCR. Relative expression was normalized to the spike-internal control and compared to normal samples as 1 using the -2ΔΔCt method in principle.

Results: Our results represented 9 miRs of miR-206, miR-155-5p, miR-143-3p, miR-193a-3p, miR-30a- 5p, miR-30d-5p, miR-30e-5p, miR-543, miR-877-5p relate to KRAS-specific miRs, whereas, 9 miRs of miR-133b, miR-302a-3p, miR-302b-3p, miR-302d-3p, miR-302e, miR-520a-3p, miR-520b, miR-520c- 3p and miR-7-5p relevance to EGFR-specific miRs by using the bioinformatic prediction tools. Our results showed a decreased expression level of circulating serum miR-133b as well as miR-206 associating with CRC patients (local and advanced metastasis) when compared to normal (P < 0.05), significantly.

Conclusion: The circulating serum miR-133b and miR-206 can serve as significant biomarkers for monitoring the clinical outcome of progression with metastatic CRC patients. Increased drug-responsive CRC patients associated with crucial molecular intervention should be further explored, clinically.

背景:结直肠癌(CRC)是全球第三大常见癌症。非编码 RNA 或微 RNA(miRNA;miRs)生物标志物可在癌症发生和发展过程中发挥作用。特定的 KRAS 和表皮生长因子受体(EGFR)突变与 CRC 的发展有关,在控制细胞过程中扮演着表观遗传学事件的角色。循环血清 miRs 可作为生物标志物用于 CRC 的早期诊断、监测和预后,但在临床上仍不明确:目的:确定 CRC 患者循环血清 miR-133b 和 miR-206 的潜在生物标志物:采用 TargetScanHu-man7.2、miRTar2GO、miRDB、MiRanda 和 DIANA-microT-CDS 对 microRNA 进行生物信息学预测。随后提取了 44 份 CRC 血清样本(19 份局部晚期 CRC、23 份远处晚期 CRC)和 12 份正常血清样本进行 RNA 分离、cDNA 合成和 miR 验证。通过定量 RT-PCR 验证了候选循环血清 miR-133b 和 miR-206 的相对表达。用 2-ΔΔCt 方法将相对表达归一化为尖峰内对照,并与正常样本进行比较,原则上以 1 为标准:结果表明,miR-206、miR-155-5p、miR-143-3p、miR-193a-3p、miR-30a-5p、miR-30d-5p、miR-30e-5p、miR-543、miR-877-5p 中的 9 个 miRs 与 KRAS 特异性 miRs 有关,而 miR-132-3p 中的 9 个 miRs 与 KRAS 特异性 miRs 有关、通过使用生物信息学预测工具,miR-133b、miR-302a-3p、miR-302b-3p、miR-302d-3p、miR-302e、miR-520a-3p、miR-520b、miR-520c-3p 和 miR-7-5p 等 9 个 miR 与表皮生长因子受体特异性 miR 相关。我们的研究结果表明,与正常人相比,循环血清中 miR-133b 和 miR-206 的表达水平明显降低,这与 CRC 患者(局部和晚期转移)有关(P < 0.05):循环血清miR-133b和miR-206可作为重要的生物标志物,用于监测转移性CRC患者的临床预后。临床上应进一步探讨与关键分子干预相关的药物反应性 CRC 患者的增加。
{"title":"Downregulation of Serum miR-133b and miR-206 Associate with Clinical Outcomes of Progression as Monitoring Biomarkers for Metastasis Colorectal Cancer Patients.","authors":"Surasak Wanram, Namphon Klaewkla, Parichart Pinyosri","doi":"10.2174/0122115366266024240101075745","DOIUrl":"10.2174/0122115366266024240101075745","url":null,"abstract":"<p><strong>Background: </strong>Colorectal cancer (CRC) is the third most common cancer in the world. Noncoding RNAs or microRNAs (miRNAs; miRs) biomarkers can play a role in cancer carcinogenesis and progression. Specific <i>KRAS</i> and <i>EGFR</i> mutation are associated with CRC development playing a role in controlling the cellular process as epigenetic events. Circulating serum miRs can serve for early diagnosis, monitoring, and prognosis of CRC as biomarkers but it is still unclear, clinically.</p><p><strong>Objective: </strong>To determine potential biomarkers of circulating serum miR-133b and miR-206 in CRC patients Methods: Bioinformatic prediction of microRNA was screened followed by TargetScanHuman7.2, miRTar2GO, miRDB, MiRanda, and DIANA-microT-CDS. Forty-four CRC serum (19 locally advanced, 23 distant advanced CRC) and 12 normal serum samples were subsequently extracted for RNA isolation, cDNA synthesis, and miR validation. The candidate circulating serum miR-133b and miR-206 were validated resulting in a relative expression via quantitative RT-PCR. Relative expression was normalized to the spike-internal control and compared to normal samples as 1 using the -2ΔΔCt method in principle.</p><p><strong>Results: </strong>Our results represented 9 miRs of miR-206, miR-155-5p, miR-143-3p, miR-193a-3p, miR-30a- 5p, miR-30d-5p, miR-30e-5p, miR-543, miR-877-5p relate to KRAS-specific miRs, whereas, 9 miRs of miR-133b, miR-302a-3p, miR-302b-3p, miR-302d-3p, miR-302e, miR-520a-3p, miR-520b, miR-520c- 3p and miR-7-5p relevance to EGFR-specific miRs by using the bioinformatic prediction tools. Our results showed a decreased expression level of circulating serum miR-133b as well as miR-206 associating with CRC patients (local and advanced metastasis) when compared to normal (P < 0.05), significantly.</p><p><strong>Conclusion: </strong>The circulating serum miR-133b and miR-206 can serve as significant biomarkers for monitoring the clinical outcome of progression with metastatic CRC patients. Increased drug-responsive CRC patients associated with crucial molecular intervention should be further explored, clinically.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11275315/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139479433","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Tumor Targeting via siRNA-COG3 to Suppress Tumor Progression in Mice and Inhibit Cancer Metastasis and Angiogenesis in Ovarian Cancer Cell Lines. 通过 siRNA-COG3 靶向肿瘤,抑制小鼠肿瘤进展并抑制卵巢癌细胞系的癌症转移和血管生成
Pub Date : 2024-01-01 DOI: 10.2174/0122115366275856240101083442
Janat Ijabi, Roghayeh Ijabi, Parisa Roozehdar, Zachary A Kaminsky, Hemen Moradi-Sardareh, Najmeh Tehranian, Naveed Ahmed

Background: The COG complex is implicated in the tethering of retrograde intra-Golgi vesicles, which involves vesicular tethering and SNAREs. SNARE complexes mediate the invasion and metastasis of cancer cells through MMPs which activate growth factors for ECM fragments by binding to integrin receptors. Increasing MMPs is in line with YKL40 since YKL40 is linked to promoting angiogenesis through VEGF and can increase ovarian cancer (OC) resistance to chemotropic and cell migration.

Objective: The aim of this study is an assessment of siRNA-COG3 on proliferation, invasion, and apoptosis of OC cells. In addition, siRNA-COG3 may prevent the growth of OC cancer in mice with tumors.

Methods: Primary OC cell lines will be treated with siRNA-COG3 to assay YKL40 and identified angiogenesis by Tube-like structure formation in HOMECs. The Golgi morphology was analyzed using Immunofluorescence microscopy. Furthermore, the effects of siRNA-COG3 on the proliferation and apoptosis of cells were evaluated using MTT and TUNEL assays. Clones of the HOSEpiC OC cell line were subcutaneously implanted in FVB/N mice. Mice were treated after two weeks of injection of cells using siRNA-COG3. Tumor development suppression was detected by D-luciferin. RT-PCR and western blotting analyses were applied to determine COG3, MT1- MMP, SNAP23, and YKL40 expression to investigate the effects of COG3 gene knockdown.

Results: siRNA-COG3 exhibited a substantial effect in suppressing tumor growth in mice. It dramatically reduced OC cell proliferation and triggered apoptosis (all p < 0.01). Inhibition of COG3, YKL-40, and MT1-MPP led to suppression of angiogenesis and reduction of microvessel density through SNAP23 in OC cells.

Conclusion: Overall, by knockdown of the COG3 gene, MT1-MMP and YKL40 were dropped, leading to suppressed angiogenesis along with decreasing migration and proliferation. SiRNACOG3 may be an ideal agent to consider for clinical trial assessment therapy for OC, especially when an antiangiogenic SNAR-pathway targeting drug.

背景:COG复合体参与了高尔基体内囊泡的逆行拴系,其中涉及囊泡拴系和SNARE。SNARE复合物通过MMPs介导癌细胞的侵袭和转移,MMPs通过与整合素受体结合激活ECM碎片的生长因子。增加 MMPs 与 YKL40 相符,因为 YKL40 与通过血管内皮生长因子促进血管生成有关,可增加卵巢癌(OC)对趋化因子和细胞迁移的抵抗力:本研究旨在评估 siRNA-COG3 对 OC 细胞增殖、侵袭和凋亡的影响。此外,siRNA-COG3 还能阻止肿瘤小鼠中 OC 癌细胞的生长:方法:用 siRNA-COG3 处理原代 OC 细胞系,以检测 YKL40,并通过 HOMECs 中管状结构的形成确定血管生成。使用免疫荧光显微镜分析高尔基体的形态。此外,还使用 MTT 和 TUNEL 检测法评估了 siRNA-COG3 对细胞增殖和凋亡的影响。HOSEpiC OC 细胞系克隆被皮下植入 FVB/N 小鼠体内。注射细胞两周后,用 siRNA-COG3 处理小鼠。用D-荧光素检测肿瘤发生抑制情况。结果:siRNA-COG3 在抑制小鼠肿瘤生长方面有显著效果。结果表明:siRNA-COG3 在抑制小鼠肿瘤生长方面有显著效果,它能显著减少 OC 细胞增殖并引发细胞凋亡(均 p < 0.01)。抑制 COG3、YKL-40 和 MT1-MPP 可通过 SNAP23 抑制 OC 细胞的血管生成并降低微血管密度:总之,通过敲除 COG3 基因,MT1-MMP 和 YKL40 的作用减弱,从而抑制了血管生成,同时降低了迁移和增殖。SiRNA-COG3可能是临床试验评估治疗OC的理想药物,尤其是抗血管生成SNAR通路靶向药物。
{"title":"Tumor Targeting <i>via</i> siRNA-COG3 to Suppress Tumor Progression in Mice and Inhibit Cancer Metastasis and Angiogenesis in Ovarian Cancer Cell Lines.","authors":"Janat Ijabi, Roghayeh Ijabi, Parisa Roozehdar, Zachary A Kaminsky, Hemen Moradi-Sardareh, Najmeh Tehranian, Naveed Ahmed","doi":"10.2174/0122115366275856240101083442","DOIUrl":"10.2174/0122115366275856240101083442","url":null,"abstract":"<p><strong>Background: </strong>The COG complex is implicated in the tethering of retrograde intra-Golgi vesicles, which involves vesicular tethering and SNAREs. SNARE complexes mediate the invasion and metastasis of cancer cells through MMPs which activate growth factors for ECM fragments by binding to integrin receptors. Increasing MMPs is in line with YKL40 since YKL40 is linked to promoting angiogenesis through VEGF and can increase ovarian cancer (OC) resistance to chemotropic and cell migration.</p><p><strong>Objective: </strong>The aim of this study is an assessment of siRNA-COG3 on proliferation, invasion, and apoptosis of OC cells. In addition, siRNA-COG3 may prevent the growth of OC cancer in mice with tumors.</p><p><strong>Methods: </strong>Primary OC cell lines will be treated with siRNA-COG3 to assay YKL40 and identified angiogenesis by Tube-like structure formation in HOMECs. The Golgi morphology was analyzed using Immunofluorescence microscopy. Furthermore, the effects of siRNA-COG3 on the proliferation and apoptosis of cells were evaluated using MTT and TUNEL assays. Clones of the HOSEpiC OC cell line were subcutaneously implanted in FVB/N mice. Mice were treated after two weeks of injection of cells using siRNA-COG3. Tumor development suppression was detected by D-luciferin. RT-PCR and western blotting analyses were applied to determine COG3, MT1- MMP, SNAP23, and YKL40 expression to investigate the effects of COG3 gene knockdown.</p><p><strong>Results: </strong>siRNA-COG3 exhibited a substantial effect in suppressing tumor growth in mice. It dramatically reduced OC cell proliferation and triggered apoptosis (all p < 0.01). Inhibition of COG3, YKL-40, and MT1-MPP led to suppression of angiogenesis and reduction of microvessel density through SNAP23 in OC cells.</p><p><strong>Conclusion: </strong>Overall, by knockdown of the COG3 gene, MT1-MMP and YKL40 were dropped, leading to suppressed angiogenesis along with decreasing migration and proliferation. SiRNACOG3 may be an ideal agent to consider for clinical trial assessment therapy for OC, especially when an antiangiogenic SNAR-pathway targeting drug.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139513603","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Urinary miRNAs: Technical Updates. 尿液 miRNAs:技术更新。
Pub Date : 2024-01-01 DOI: 10.2174/0122115366305985240502094814
Santhi Raveendran, Alia Al Massih, Muna Al Hashmi, Asma Saeed, Iman Al-Azwani, Rebecca Mathew, Sara Tomei

Due to its non-invasive nature and easy accessibility, urine serves as a convenient biological fluid for research purposes. Furthermore, urine samples are uncomplicated to preserve and relatively inexpensive. MicroRNAs (miRNAs), small molecules that regulate gene expression post-transcriptionally, play vital roles in numerous cellular processes, including apoptosis, cell differentiation, development, and proliferation. Their dysregulated expression in urine has been proposed as a potential biomarker for various human diseases, including bladder cancer. To draw reliable conclusions about the roles of urinary miRNAs in human diseases, it is essential to have dependable and reproducible methods for miRNA extraction and profiling. In this review, we address the technical challenges associated with studying urinary miRNAs and provide an update on the current technologies used for urinary miRNA isolation, quality control assessment, and miRNA profiling, highlighting both their advantages and limitations.

由于尿液具有非侵入性和易于获取的特点,因此是一种便于研究的生物液体。此外,尿液样本的保存并不复杂,而且相对便宜。微小核糖核酸(miRNA)是转录后调控基因表达的小分子,在细胞凋亡、细胞分化、发育和增殖等众多细胞过程中发挥着重要作用。尿液中表达失调被认为是包括膀胱癌在内的多种人类疾病的潜在双标志物。要就尿液中 miRNA 在人类疾病中的作用得出可靠的结论,必须有可靠、可重复的 miRNA 提取和分析方法。在这篇综述中,我们探讨了研究尿液 miRNAs 所面临的技术挑战,并介绍了目前用于尿液 miRNA 分离、质量控制评估和 miRNA 图谱分析的最新技术,突出强调了这些技术的优势和局限性。
{"title":"Urinary miRNAs: Technical Updates.","authors":"Santhi Raveendran, Alia Al Massih, Muna Al Hashmi, Asma Saeed, Iman Al-Azwani, Rebecca Mathew, Sara Tomei","doi":"10.2174/0122115366305985240502094814","DOIUrl":"10.2174/0122115366305985240502094814","url":null,"abstract":"<p><p>Due to its non-invasive nature and easy accessibility, urine serves as a convenient biological fluid for research purposes. Furthermore, urine samples are uncomplicated to preserve and relatively inexpensive. MicroRNAs (miRNAs), small molecules that regulate gene expression post-transcriptionally, play vital roles in numerous cellular processes, including apoptosis, cell differentiation, development, and proliferation. Their dysregulated expression in urine has been proposed as a potential biomarker for various human diseases, including bladder cancer. To draw reliable conclusions about the roles of urinary miRNAs in human diseases, it is essential to have dependable and reproducible methods for miRNA extraction and profiling. In this review, we address the technical challenges associated with studying urinary miRNAs and provide an update on the current technologies used for urinary miRNA isolation, quality control assessment, and miRNA profiling, highlighting both their advantages and limitations.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141082654","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MicroRNA Expression Profile in Early-Stage Breast Cancers. 早期乳腺癌中微小RNA的表达谱。
Pub Date : 2024-01-01 DOI: 10.2174/0122115366256479231003064842
Krishna Patel, Deva Magendhra Rao, Shirley Sundersingh, Sridevi Velusami, Thangarajan Rajkumar, Bipin Nair, Akhilesh Pandey, Aditi Chatterjee, Samson Mani, Harsha Gowda

Background: Breast cancer is one of the leading causes of cancer deaths in women. Early diagnosis offers the best hope for a cure. Ductal carcinoma in situ is considered a precursor of invasive ductal carcinoma of the breast. In this study, we carried out microRNA sequencing from 7 ductal carcinoma in situ (DCIS), 6 infiltrating ductal carcinomas (IDC Stage IIA) with paired normal, and 5 unpaired normal breast tissue samples.

Methods: We have deployed miRge for microRNA analysis, DESeq for differential expression analysis, and Cytoscape for competing endogenous RNA network investigation.

Results: Here, we identified 76 miRNAs that were differentially expressed in DCIS and IDC. Additionally, we provide preliminary evidence of miR-365b-3p and miR-7-1-3p being overexpressed, and miR-6507-5p, miR-487b-3p, and miR-654-3p being downregulated in DCIS relative to normal breast tissue. We also identified a miRNA miR-766-3p that was overexpressed in earlystage IDCs. The overexpression of miR-301a-3p in DCIS and IDC was confirmed in 32 independent breast cancer tissue samples.

Conclusion: Higher expression of miR-301a-3p is associated with poor overall survival in The Cancer Genome Atlas Breast Cancer (TCGA-BRCA) dataset, indicating that it may be associated with DCIS at high risk of progressing to IDC and warrants deeper investigation.

背景:癌症是女性癌症死亡的主要原因之一。早期诊断为治愈提供了最好的希望。原位导管癌被认为是乳腺浸润性导管癌的前兆。在本研究中,我们对7例导管原位癌(DCIS)、6例浸润性导管癌(IDC IIA期)的配对正常和5例未配对正常乳腺组织样本进行了微小RNA测序。我们鉴定了76种在DCIS和IDC中差异表达的miRNA。我们还鉴定了一种在早期IDC中过表达的miRNA miR-766-3p。在32个独立的癌症组织样本中证实了miR-301a-3p在DCIS和IDC中的过度表达。结果:在Can-cer基因组图谱乳腺癌症(TCGA-BRCA)数据集中,miR-301a-3p的高表达与总体生存率低有关,这表明它可能与DCIS有关,进展为IDC的风险很高,需要进行更深入的研究。结论:我们还分析了与差异表达miRNA相关的竞争性内源性网络,并确定LRRC75A-AS1和MAGI2-AS3是可能在早期乳腺癌中发挥重要作用的lncRNA。
{"title":"MicroRNA Expression Profile in Early-Stage Breast Cancers.","authors":"Krishna Patel, Deva Magendhra Rao, Shirley Sundersingh, Sridevi Velusami, Thangarajan Rajkumar, Bipin Nair, Akhilesh Pandey, Aditi Chatterjee, Samson Mani, Harsha Gowda","doi":"10.2174/0122115366256479231003064842","DOIUrl":"10.2174/0122115366256479231003064842","url":null,"abstract":"<p><strong>Background: </strong>Breast cancer is one of the leading causes of cancer deaths in women. Early diagnosis offers the best hope for a cure. Ductal carcinoma in situ is considered a precursor of invasive ductal carcinoma of the breast. In this study, we carried out microRNA sequencing from 7 ductal carcinoma in situ (DCIS), 6 infiltrating ductal carcinomas (IDC Stage IIA) with paired normal, and 5 unpaired normal breast tissue samples.</p><p><strong>Methods: </strong>We have deployed miRge for microRNA analysis, DESeq for differential expression analysis, and Cytoscape for competing endogenous RNA network investigation.</p><p><strong>Results: </strong>Here, we identified 76 miRNAs that were differentially expressed in DCIS and IDC. Additionally, we provide preliminary evidence of miR-365b-3p and miR-7-1-3p being overexpressed, and miR-6507-5p, miR-487b-3p, and miR-654-3p being downregulated in DCIS relative to normal breast tissue. We also identified a miRNA miR-766-3p that was overexpressed in earlystage IDCs. The overexpression of miR-301a-3p in DCIS and IDC was confirmed in 32 independent breast cancer tissue samples.</p><p><strong>Conclusion: </strong>Higher expression of miR-301a-3p is associated with poor overall survival in The Cancer Genome Atlas Breast Cancer (TCGA-BRCA) dataset, indicating that it may be associated with DCIS at high risk of progressing to IDC and warrants deeper investigation.</p>","PeriodicalId":38067,"journal":{"name":"MicroRNA (Shariqah, United Arab Emirates)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49692876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
MicroRNA (Shariqah, United Arab Emirates)
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1