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Nested association mapping population in japonica rice: Development, characterization, and application in genome-wide association studies 粳稻嵌套关联图谱群体:开发、特征描述及在全基因组关联研究中的应用
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-18 DOI: 10.1016/j.cpb.2024.100401
Multiparental mapping populations hold great potential for dissecting quantitative traits and rapidly identifying genetic determinants. We developed a japonica nested association mapping population, KNU_NAM, comprising 880 lines derived from ten recombinant inbred lines (RILs) families of prominent varieties and the elite Korean variety Shindongjin. Genetic characterization of KNU_NAM revealed 48,159 polymorphic SNPs, with family counts ranging from 18,787 to 42,578 and an average of 30,019 SNPs per family. Further molecular diversity analysis of KNU_NAM indicated reduced population structure and broad genetic diversity. Genome-wide association studies (GWAS) on five morphological traits identified 47 significant marker-trait associations (MTAs), with a set of 18 MTAs located on chromosome 9. Linkage disequilibrium (LD) block analysis of this region revealed 15 haplotypes and identified five key genes associated with panicle architecture: OsDEP1, OsEATB, OsLGD1, and OsSPL18. Additionally, two non-synonymous MTAs on chromosome 7 were located on the exon of OsPRR37/Ghd7.1, a gene associated with plant height, heading date, and grain number per panicle. Further phenotypic performance analysis of haplotypes from these hotspot regions revealed significant differences in the targeted traits. The study validates the potential of KNU_NAM and GWAS for high-resolution genetic mapping in rice breeding programs, highlighting the utility of these populations for enhancing genetic diversity and improving trait selection in rice.
多亲本制图群体在剖析数量性状和快速鉴定遗传决定因素方面具有巨大潜力。我们建立了一个粳稻嵌套关联作图群体 KNU_NAM,该群体由 880 个品系组成,这些品系来自 10 个著名品种的近交系重组(RIL)家族和韩国优良品种 "新东真"。KNU_NAM 的遗传特征发现了 48,159 个多态 SNPs,家系数从 18,787 个到 42,578 个不等,平均每个家系有 30,019 个 SNPs。对 KNU_NAM 的进一步分子多样性分析表明,种群结构缩小,遗传多样性广泛。对五个形态性状的全基因组关联研究(GWAS)发现了 47 个显著的标记-性状关联(MTAs),其中 18 个 MTAs 位于 9 号染色体上。对该区域的连锁不平衡(LD)区块分析发现了 15 个单倍型,并确定了与圆锥花序结构相关的五个关键基因:OsDEP1、OsEATB、OsLGD1 和 OsSPL18。此外,第 7 号染色体上的两个非同义 MTA 位于 OsPRR37/Ghd7.1 的外显子上,该基因与株高、头期和每圆锥花序的粒数有关。对这些热点区域单倍型的进一步表型表现分析表明,这些单倍型在目标性状上存在显著差异。该研究验证了 KNU_NAM 和 GWAS 在水稻育种计划中用于高分辨率遗传图谱的潜力,强调了这些群体在提高水稻遗传多样性和改进性状选择方面的实用性。
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引用次数: 0
Pyramiding of multiple resistant genes of blast and bacterial blight diseases in the background of rice (Oryza sativa) mega variety BRRI dhan29 水稻(Oryza sativa)超大型品种 BRRI dhan29 背景中抗稻瘟病和细菌性疫病的多抗性基因的金字塔结构
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-18 DOI: 10.1016/j.cpb.2024.100400
Blast and bacterial blight (BB) are the two major rice diseases in the world including Bangladesh. In this study, BB resistance genes (Xa21 and xa13) and blast resistance (Pi9 and Pb1) genes were pyramided into a mega variety, BRRI dhan29 through marker-assisted backcross breeding. IRBB58 was used as a BB-resistant donor and Pi9-US2, and Pb1-US2 were used as blast-resistant donors. Backcross was done between BRRI dhan29 and donor parents to develop BC3F1 population and then selfing was done to develop BC3F6 population. BC3F2 population was genotyped and phenotyped for segregation analysis and BC3F6 was evaluated for genotyping, phenotyping and morphological traits and yields. Chi-square analysis of BC3F2 data revealed that blast and BB resistance followed the single gene mendelian fashion (1:2:1 and 3:1). Two to four gene combinations were found in the advanced lines of the BC3F6 population. The yield of the advanced lines ranged from 6.42 (t ha−1) to 9.5 (t ha−1) and they showed resistant against blast and BB with mean disease scores ranging from 0.67 to 2.33 and 0.33–2.33, respectively. Finally, eight lines having four genes (xa13, Xa21, Pi9 and Pb1) were selected for multilocational (five locations) trials for yield performance and disease reaction. Mean yield data of eight advanced lines of all locations were varied from 6.48±0.15–8.38±0.11 t ha−1 and all the lines showed resistant reactions against blast (score 0.53–1) and BB (score 0.6–0.87) disease. The highest yield was found in BR (Path) 13800-BC3–224–12 (G28, 8.38±0.11 t ha−1) followed by BR (Path) 13800-BC3–134–252 (G26, 8.28±0.08 t ha−1) and BR (Path) 13800-BC3–136–115 (G12, 8.24±0.07 t ha−1). Pyramided advanced lines of this study could be released as BB and blast-resistant varieties or could be utilized as donor parents in resistant breeding.
稻瘟病和细菌性枯萎病(BB)是包括孟加拉国在内的世界两大水稻病害。在这项研究中,通过标记辅助回交育种,将抗BB基因(Xa21和xa13)和抗稻瘟病基因(Pi9和Pb1)构建成一个巨型品种BRRI dhan29。IRBB58 用作抗 BB 供体,Pi9-US2 和 Pb1-US2 用作抗瘟供体。在 BRRI dhan29 和供体亲本之间进行回交,培育出 BC3F1 群体,然后进行自交,培育出 BC3F6 群体。对 BC3F2 群体进行了基因分型和表型分析,对 BC3F6 进行了基因分型、表型、形态性状和产量评估。对 BC3F2 数据的卡方分析表明,稻瘟病和 BB 抗性遵循单基因孟德尔模式(1:2:1 和 3:1)。在 BC3F6 群体的先进品系中发现了 2 至 4 个基因组合。高级品系的产量在 6.42(吨/公顷-1)到 9.5(吨/公顷-1)之间,对稻瘟病和 BB 表现出抗性,平均病害评分分别在 0.67 到 2.33 之间和 0.33 到 2.33 之间。最后,有四个基因(xa13、Xa21、Pi9 和 Pb1)的八个品系被选中进行多地(五个地点)产量和病害反应试验。所有地点的 8 个先进品系的平均产量数据在 6.48±0.15-8.38±0.11 吨/公顷-1 之间,所有品系都表现出对稻瘟病(0.53-1 分)和 BB 病(0.6-0.87 分)的抗性。产量最高的是 BR (Path) 13800-BC3-224-12(G28,8.38±0.11 吨/公顷-1),其次是 BR (Path) 13800-BC3-134-252(G26,8.28±0.08 吨/公顷-1)和 BR (Path) 13800-BC3-136-115(G12,8.24±0.07 吨/公顷-1)。本研究的金字塔型先进品系可作为抗 BB 和抗瘟疫品种发布,也可作为抗性育种的供体亲本。
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引用次数: 0
Cryopreservation of Arum palaestinum plant callus as a strategy for mitigating extinction risks 低温保存旱金莲植物胼胝体作为降低灭绝风险的一种策略
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-18 DOI: 10.1016/j.cpb.2024.100402
Arum palaestinum is a wild perennial plant commonly known as "Al-Loof" in Jordan. Due to overharvesting, climate change, and increasing demand, its natural populations are threatened with extinction. Cryopreservation, an effective method for conserving plant material at ultra-low temperatures, is explored for A. palaestinum calli. We investigated the applicability of encapsulation-vitrification (using different plant vitrification solutions (PVS) and incubation times), encapsulation-dehydration (using sucrose or sorbitol at different concentrations and dehydration times), and the v-cryoplate (using different pre-culture times and temperatures) techniques. In the encapsulation-vitrification experiment, a notable 82.4 % regrowth rate was achieved by desiccating calli in plant vitrification solution 2 (PVS2) for 10 minutes at 25 °C. The encapsulation-dehydration technique resulted in an 82.6 % regrowth rate by incubating calli for one day in low sucrose levels (0.1 M sucrose) following one hour of air dehydration, where the moisture content of the beads was 30 %. The moisture content of the beads decreased from 81 % before chemical and air dehydration to 71 % after 0 hours of air dehydration combined with chemical dehydration using 0.1 M sucrose or sorbitol. It further dropped to 30–34 % after one day of chemical dehydration with 0.1 M sucrose and 1 hour of air dehydration. The v-cryoplate technique successfully conserved calli, showing impressive survival and regrowth percentages (96.8 %) when the callus was pre-cultured with 0.3 M sucrose for three days at 5 °C. Temperature during pre-culture significantly influenced regrowth percentages in the v-cryoplate technique. The study establishes promising cryopreservation protocols for A. palaestinum calli, offering a means to conserve germplasm and contribute to environmental and biodiversity protection by reintroducing endangered plants to their native habitats.
Arum palaestinum 是一种多年生野生植物,在约旦通常被称为 "Al-Loof"。由于过度采摘、气候变化和需求增加,其自然种群正面临灭绝的威胁。低温保存是一种在超低温下保存植物材料的有效方法,我们对 A. palaestinum 的胼胝体进行了探索。我们研究了封装-玻璃化(使用不同的植物玻璃化溶液(PVS)和培养时间)、封装-脱水(使用不同浓度的蔗糖或山梨醇和脱水时间)以及 V 型冻存(使用不同的预培养时间和温度)技术的适用性。在封装-玻璃化实验中,将胼胝体置于植物玻璃化溶液 2(PVS2)中,在 25 °C 下干燥 10 分钟,再生率达到 82.4%。通过封装-脱水技术,将胼胝体在低浓度蔗糖(0.1 M 蔗糖)中培养一天,然后在空气中脱水一小时,珠子的含水量为 30%,再生率为 82.6%。在使用 0.1 M 蔗糖或山梨醇进行化学脱水和空气脱水 0 小时后,珠子的含水量从化学脱水和空气脱水前的 81% 降至 71%。在使用 0.1 M 蔗糖进行化学脱水一天和空气脱水 1 小时后,水分含量进一步降至 30-34%。v-cryoplate 技术成功地保存了胼胝体,在 5 °C 下用 0.3 M 蔗糖预培养三天后,胼胝体的存活率和再生率(96.8%)令人印象深刻。预培养过程中的温度对 V 型干细胞技术中的再生率有显著影响。该研究为 A. palaestinum 胼胝体建立了前景广阔的低温保存方案,提供了一种保存种质资源的方法,并通过将濒危植物重新引入其原生栖息地,为环境和生物多样性保护做出了贡献。
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引用次数: 0
Promotion of gentiopicroside production and transcriptional responses of biosynthetic genes in adventitious root cultures of Gentiana scabra Bunge by elicitation with methyl jasmonate 用茉莉酸甲酯诱导促进龙胆草不定根培养物中龙胆内酯的产生和生物合成基因的转录反应
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-17 DOI: 10.1016/j.cpb.2024.100397
Abiotic elicitors play a crucial role in regulating various aspects of plant growth, development, and specialized metabolism. This study aimed to further increase the gentiopicroside content by screening elicitor types, optimizing elicitation conditions, and estimating transcriptional responses of biosynthetic genes in the adventitious roots of Gentiana scabra. The results showed that methyl jasmonate (MeJA) was the most effective inducer for biomass accumulation in the adventitious roots of G. scabra among tested elicitors, with fresh weight (FW) and dry weight (DW) of 13.26 ± 0.57 g flask−1 and 1.31 ± 0.25 g flask−1, respectively. The effects of the induction time and concentration of MeJA on the biomass and gentiopicroside content in the adventitious roots of G. scabra were investigated. The maximum FW (15.73 ± 0.41 g flask−1) and DW (1.51 ± 0.19 g flask−1) were obtained when the roots were cultured for 6 days in MS liquid medium containing 3.0 mg L−1 1-naphthlcetic acid (NAA) and 1.0 mg L−1 kinetin (KT) at MeJA concentration of 100 μM L−1. Also, the gentiopicroside content significantly increased to 62.62 ± 0.27 mg g−1 DW, and was 2.49 times higher than that for the nontreated control. The expression levels of 12 candidate gentiopicroside biosynthesis–related genes involved in the mevalonic acid (MVA), methyl erythritol phosphate (MEP), and secoiridoid pathways were estimated in the adventitious roots of G. scabra to further understand the transcriptional response to MeJA elicitation. Among these, 10 genes (ACCT1, HMGR1, MCK1, MVD1, GPPS4, G10H, IS3, DL7H1, DXS5, and ISPH5) were upregulated whereas DXR1 and IDI1 genes were downregulated in the adventitious roots of G. scabra compared with nontreated control, with significant differences having threshold P value ≤0.05. The transcriptional analyses revealed that 12 candidate genes were the key regulated genes in the gentiopicroside biosynthetic pathway. Overall, the findings provided a promising, feasible, and stable approach to utilizing MeJA elicitation to increase the production of valuable gentiopicroside. Additionally, they provided a foundation for future gentiopicroside biosynthesis through metabolic engineering strategies in the adventitious roots of G. scabra.
非生物诱导剂在调控植物生长、发育和特殊代谢的各个方面发挥着至关重要的作用。本研究旨在通过筛选诱导剂类型、优化诱导条件以及估测秦艽不定根中生物合成基因的转录反应,进一步提高秦艽苷的含量。结果表明,在所测试的诱导剂中,茉莉酸甲酯(MeJA)对葶苈不定根生物量积累的诱导效果最好,其鲜重(FW)和干重(DW)分别为 13.26 ± 0.57 g flask-1 和 1.31 ± 0.25 g flask-1。研究了诱导时间和 MeJA 浓度对葶苈子不定根生物量和龙胆内酯含量的影响。在含有 3.0 mg L-1 1-naphthlcetic acid (NAA) 和 1.0 mg L-1 kinetin (KT) 的 MS 液体培养基中,当 MeJA 浓度为 100 μM L-1 时,培养 6 天的根系可获得最大的 FW(15.73 ± 0.41 g flask-1)和 DW(1.51 ± 0.19 g flask-1);当 MeJA 浓度为 100 μM L-1 时,培养 6 天的根系可获得最大的 FW(15.73 ± 0.41 g flask-1)和 DW(1.51 ± 0.19 g flask-1)。同时,龙胆甙的含量也明显增加到 62.62 ± 0.27 mg g-1 DW,是未处理对照的 2.49 倍。为了进一步了解龙胆草对 MeJA 诱导的转录响应,研究人员估算了 12 个与龙胆草甙生物合成相关的候选基因在葶苈不定根中的表达水平,这些基因涉及甲羟戊酸(MVA)、赤藓糖醇磷酸甲酯(MEP)和仲呋喃类途径。结果表明,与未处理的对照组相比,葶苈不定根中有 10 个基因(ACCT1、HMGR1、MCK1、MVD1、GPPS4、G10H、IS3、DL7H1、DXS5 和 ISPH5)上调,而 DXR1 和 IDI1 基因下调,差异显著(阈值 P ≤0.05)。转录分析表明,12 个候选基因是龙胆内酯生物合成途径中的关键调控基因。总之,研究结果为利用MeJA诱导提高珍贵龙胆内酯的产量提供了一种前景广阔、可行且稳定的方法。此外,这些研究还为今后通过代谢工程策略在葶苈子不定根中进行龙胆草甙生物合成奠定了基础。
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引用次数: 0
Temporal changes in the proanthocyanidins to anthocyanins ratio during dormancy associate with bloom time variations in peach 桃子休眠期原花青素与花青素比率的时间变化与开花时间的变化有关
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-15 DOI: 10.1016/j.cpb.2024.100393
Our previous research demonstrated that fall applications of ethephon, an ethylene-releasing plant growth regulator, delay bloom in peach, accompanied by changes in endogenous hormones, ROS, sugar metabolism, and transcriptomic profiles during bud dormancy phases (endodormancy and ecodormancy). In this study, floral bud tissues were collected from ethephon-treated and untreated trees at three time points (200, 600, and 1000 chilling hours, CH) during endodormancy and two points (1000 and 3000 growing degree hours, GDH) during ecodormancy. Using ultra-performance liquid chromatography time-of-flight mass spectrometry (UPLC-TOF/MS), we aimed to unravel the untargeted metabolic changes explaining ethephon-mediated bloom delay. Metabolite set-enrichment analysis (MSEA) revealed significant chemical group variations between dormancy phases, with a threefold increase in flavonoids during endodormancy and a doubling of organic and amino acids during ecodormancy. Further analysis of genes associated with the biosynthesis and transcriptional regulation of the flavonoid pathway showed that ethephon treatment upregulated genes associated with proanthocyanidin (PA) biosynthesis and downregulated genes related to anthocyanins (ACNs). We quantified PA and ACN contents in 12 peach cultivars with contrasting bloom times and chilling requirements (e.g. 727–1308 CH). Late-bloom cultivars had higher PA levels during endodormancy, while early-bloom cultivars had higher ACN levels during ecodormancy. Staining buds with 4-dimethylaminocinnamaldehyde (DMAC) dye revealed a decline in the PA/ACN ratio at later ecodormancy stages, correlating with bloom time. Integrated analysis of metabolite content and gene expression in late-bloom 'KV021779' and early-bloom 'John Boy' cultivars validated that late-blooming cultivars have higher PA levels during endodormancy, extending dormancy-release periods and resulting in later blooms.
我们之前的研究表明,秋季施用乙烯利(一种释放乙烯的植物生长调节剂)会延迟桃树开花,并伴随着内源激素、ROS、糖代谢以及花芽休眠期(内休眠期和生态休眠期)转录组的变化。在这项研究中,在休眠期的三个时间点(200、600 和 1000 个寒冷小时,CH)和生态休眠期的两个时间点(1000 和 3000 个生长度小时,GDH),从经过乙硫磷处理和未经过乙硫磷处理的果树上采集了花芽组织。我们利用超高效液相色谱飞行时间质谱(UPLC-TOF/MS)技术,旨在揭示乙硫磷介导的开花延迟的非靶向代谢变化。代谢物集富集分析(MSEA)揭示了休眠期之间化学组的显著变化,其中黄酮类化合物在休眠期增加了三倍,有机酸和氨基酸在生态休眠期增加了一倍。对黄酮类化合物途径的生物合成和转录调控相关基因的进一步分析表明,乙硫磷处理上调了与原花青素(PA)生物合成相关的基因,下调了与花青素(ACN)相关的基因。我们对 12 个开花时间和冷藏要求(如 727-1308 CH)不同的桃栽培品种的 PA 和 ACN 含量进行了量化。晚花栽培品种在休眠期的 PA 含量较高,而早花栽培品种在生态休眠期的 ACN 含量较高。用 4-二甲氨基肉桂醛(DMAC)染料对花蕾进行染色,发现 PA/ACN 比率在生态休眠后期有所下降,这与开花时间有关。对晚花'KV021779'和早花'John Boy'栽培品种的代谢物含量和基因表达进行综合分析,验证了晚花栽培品种在内眠期间具有较高的 PA 含量,延长了休眠释放期,从而导致晚花。
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引用次数: 0
The transcription factor TaNF-YB4 overexpression in wheat increases plant vigor and yield 转录因子 TaNF-YB4 在小麦中的过表达可提高植物活力和产量
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-10 DOI: 10.1016/j.cpb.2024.100394
Addressing food security is a priority in developing countries. This study aimed to improve wheat yield by overexpressing the TaNF-YB4 transcription factor, which is involved in carbon assimilation and stress tolerance. An expression cassette for TaNF-YB4 was developed in a modified wheat transformation vector (pSB219) and examined through transient expression in Nicotiana tabacum, followed by Agrobacterium-mediated transformation of wheat variety FSD-2008. T0 transgenic plants were propagated to obtain T3 generation PCR-positive plants. Transgene expression was assessed in PCR-verified T2 plants using RT-PCR and qRT-PCR at six weeks post-germination. qRT-PCR analysis using the ΔΔCT method indicated higher TaNF-YB4 expression in transgenic lines than in the wild-type control plants. Improved agronomic and phenotypic traits were observed with a 6–36 % increase in 1000-grain weight in the selected transgenic lines. Root architecture assessments demonstrated enhanced root length, surface area, and projected area in transgenic lines compared with wild-type plants. Additionally, notable variances in total chlorophyll, protein, and sugar content levels were observed between the transgenic lines and control plants, demonstrating statistical significance with a p-value ≤ 0.05. This study indicates that low-level constitutive expression of TaNF-YB4 can enhance wheat yield, presenting a viable strategy for improving wheat productivity.
解决粮食安全问题是发展中国家的当务之急。本研究旨在通过过表达参与碳同化和抗逆的转录因子 TaNF-YB4 来提高小麦产量。在改良的小麦转化载体(pSB219)中开发了 TaNF-YB4 的表达盒,并通过在烟草中的瞬时表达进行了检验,然后用农杆菌介导转化了小麦品种 FSD-2008。T0 转基因植株通过繁殖获得 T3 代 PCR 阳性植株。利用 ΔΔCT 方法进行的 qRT-PCR 分析表明,转基因品系中 TaNF-YB4 的表达高于野生型对照植株。所选转基因品系的农艺性状和表型特征得到了改善,千粒重增加了 6-36%。根系结构评估表明,与野生型植物相比,转基因品系的根系长度、表面积和投影面积都有所增加。此外,还观察到转基因品系与对照植株在总叶绿素、蛋白质和糖含量水平上存在显著差异,p 值≤ 0.05,具有统计学意义。这项研究表明,TaNF-YB4 的低水平组成型表达可提高小麦产量,为提高小麦产量提供了一种可行的策略。
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引用次数: 0
Green-synthesized carbon dots from ginger: Multifunctional agents against oral pathogens with biocompatibility in human gingival fibroblast cells 生姜绿色合成碳点:在人牙龈成纤维细胞中具有生物相容性的抗口腔病原体多功能制剂
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-09 DOI: 10.1016/j.cpb.2024.100392
Persistent antibiotic use in treating oral infections often leads to drug resistance in pathogenic bacteria, notably impacting conditions like periodontitis. Addressing this challenge, the study pioneers the use of carbon dots (CDs) synthesized from ginger rhizomes (Zingiber officinale) as a novel biocompatible material. CDs were synthesized via the hydrothermal method, emphasizing a green approach, and comprehensively characterized for their optical properties and structural uniformity. The synthesized CDs showed a zeta potential of −24.9 mV, confirming the formation of stable and well-dispersed particles. Dynamic Light Scattering (DLS) confirmed an average particle size of 2.9 nm, thus validating the formation of CDs. Biomedical assessments demonstrated that the synthesized CDs were non-cytotoxic to human gingival fibroblast cell lines, with effective free radical scavenging activity and high total antioxidant capacity, as indicated by their IC50 values. CDs also exhibited moderate inhibition of protein denaturation compared to the standard. Moreover, they showed significant inhibitory effects against bacterial strains (Pseudomonas aeruginosa, Lactobacillus acidophilus, Escherichia coli, Staphylococcus aureus) and fungal strains (Aspergillus niger, Candida albicans) at minimal concentrations. Notably, CDs inhibited the growth of periodontal pathogens including Aggregatibacter actinomycetemcomitans, Tannerella forsythia, Porphyromonas gingivalis, and Prevotella intermedia. These findings underscore the potential of CDs as multifunctional agents possessing anti-inflammatory, antifungal, antioxidant, and antibacterial properties. Remarkably, they offer a promising alternative to conventional antibiotics, potentially revolutionizing oral healthcare. Their proven biocompatibility and potent bioactivity underscore their innovative potential in biomedical research. Future studies should further assess their efficacy in vivo to fully harness their clinical potential.
在治疗口腔感染时持续使用抗生素往往会导致病原菌产生耐药性,特别是对牙周炎等疾病造成影响。为了应对这一挑战,这项研究率先使用生姜根茎合成的碳点(CD)作为新型生物相容性材料。该研究采用水热法合成碳点,强调绿色环保,并对其光学特性和结构均匀性进行了全面表征。合成的 CD 的 zeta 电位为 -24.9 mV,证明形成了稳定且分散良好的颗粒。动态光散射(DLS)证实其平均粒径为 2.9 nm,从而验证了光盘的形成。生物医学评估表明,合成的 CD 对人类牙龈成纤维细胞系无毒性,具有有效的自由基清除活性和较高的总抗氧化能力(如其 IC50 值所示)。与标准物质相比,CDs 还能适度抑制蛋白质变性。此外,在最低浓度下,它们对细菌菌株(铜绿假单胞菌、嗜酸乳杆菌、大肠杆菌、金黄色葡萄球菌)和真菌菌株(黑曲霉、白色念珠菌)有明显的抑制作用。值得注意的是,CD 可抑制牙周病原体的生长,包括放线菌、连翘丹那菌、牙龈卟啉单胞菌和中间前驱菌。这些发现凸显了 CD 作为多功能制剂的潜力,它具有抗炎、抗真菌、抗氧化和抗菌特性。值得注意的是,它们有望成为传统抗生素的替代品,为口腔保健带来革命性的变化。经证实的生物相容性和强大的生物活性凸显了它们在生物医学研究中的创新潜力。未来的研究应进一步评估其体内疗效,以充分发挥其临床潜力。
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引用次数: 0
In-depth genome-wide characterization of MaNAC25 and MaNAC28 cold-responsive transcription factor binding sites in banana via DAP-Seq 通过 DAP-Seq 深入分析香蕉中 MaNAC25 和 MaNAC28 冷响应转录因子结合位点的全基因组特征
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-06 DOI: 10.1016/j.cpb.2024.100389
Mapping transcription factor proteins' binding sites across the entire genome in banana is crucial for unveiling their transcriptional regulatory mechanisms and enhancing our understanding of their regulatory networks. Our study showed that DAP-Seq experiments identified MaNAC25 and MaNAC28 numerous binding peaks, mainly in the promoter regions, with strong signals near the transcription start site (TSS). Significantly, the discovery of new binding motifs for MaNAC28 excluding NAC core binding element CGTA/G indicates their potential as novel DNA binding motifs for NAC transcription factors in cold stress response. Moreover, MaNAC25 was found to chiefly influence biological processes and molecular functions, whereas MaNAC28 was more focused on molecular functions. Both MaNAC25 and MaNAC28 extended their regulatory networks by interacting with other transcription factors during cold stress. Therefore, DAP-Seq technology furnishes essential insights and a robust foundation for researching transcriptional regulatory mechanisms among diverse transcription factors and broadening their regulatory networks.
绘制香蕉全基因组转录因子蛋白结合位点图对于揭示其转录调控机制和加深对其调控网络的理解至关重要。我们的研究表明,DAP-Seq实验发现了MaNAC25和MaNAC28的许多结合峰,这些结合峰主要位于启动子区域,在转录起始位点(TSS)附近有强信号。值得注意的是,MaNAC28的新结合基团不包括NAC核心结合元件CGTA/G,这表明它们有可能成为NAC转录因子在冷胁迫响应中的新DNA结合基团。此外,研究还发现MaNAC25主要影响生物过程和分子功能,而MaNAC28则更侧重于分子功能。在冷胁迫过程中,MaNAC25和MaNAC28都通过与其他转录因子相互作用来扩展其调控网络。因此,DAP-Seq技术为研究不同转录因子之间的转录调控机制和拓宽其调控网络提供了重要的启示和坚实的基础。
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引用次数: 0
Genetic dissection of flour whiteness through genome-wide association analysis in common wheat (Triticum aestivum L.) 通过全基因组关联分析剖析普通小麦(Triticum aestivum L.)
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-05 DOI: 10.1016/j.cpb.2024.100391
The color of flour products has an important influence on consumer acceptance. Flour color is largely determined and measured by the index of flour whiteness (FW) in China. In this study, an association population comprising 207 wheat (Triticum aestivum) accessions originating from seven countries was used for dissection of FW-related genetic loci through genome-wide association analysis. Six quantitative trait loci (QTLs) significantly associated with FW were identified, accounting for 7.87–16.53 % of the total phenotypic variation. Four KASP markers were developed from single-nucleotide polymorphisms associated with the QTLs QFW.HAAS-1AS, QFW.HAAS-1BL, QFW.HAAS-5AL, and QFW.HAAS-7AL. The phytoene synthase-encoding gene TraesCS7A03G1357000 (TaPsyA1) was identified as a candidate gene for QFW.HAAS-7AL. Two allelic variants of TaPsyA1 (designated PsyA1-a and PsyA1-b) were differentiated on the basis of a 37 bp insertion/deletion polymorphism in the second intron. PsyA1-b included the 37 bp insertion, which led to a translational frameshift in the gene and was associated with higher FW. The PsyA1-a allele lacked the 37 bp insertion and was classified into two haplotypes according to the number of repeated ‘TC’ units in a simple sequence repeat in the promoter region. Of the two PsyA1-a haplotypes, the Type 1 haplotype conferred higher FW, flour brightness, and flour redness, and lower yellow pigment content and flour yellowness. The KASP markers and PsyA1 polymorphic markers developed in the present study are suitable for use in molecular marker-assisted selection for improvement of wheat FW.
面粉产品的色泽对消费者的接受程度有重要影响。在中国,面粉颜色主要由面粉白度(FW)指数决定和衡量。本研究通过全基因组关联分析,利用由来自 7 个国家的 207 个小麦(Triticum aestivum)品种组成的关联群体,对与面粉白度(FW)相关的遗传位点进行了分析。结果发现了 6 个与 FW 显著相关的数量性状位点(QTL),占表型总变异的 7.87-16.53%。从与 QTLs QFW.HAAS-1AS、QFW.HAAS-1BL、QFW.HAAS-5AL 和 QFW.HAAS-7AL 相关的单核苷酸多态性中开发出四个 KASP 标记。植物烯合成酶编码基因 TraesCS7A03G1357000(TaPsyA1)被确定为 QFW.HAAS-7AL 的候选基因。根据第二个内含子中 37 bp 的插入/缺失多态性,区分出 TaPsyA1 的两个等位基因变体(命名为 PsyA1-a 和 PsyA1-b)。PsyA1-b 包括 37 bp 插入,它导致基因的翻译框移位,并与较高的 FW 有关。PsyA1-a 等位基因缺乏 37 bp 插入,根据启动子区简单序列重复中 "TC "单位的重复数量被分为两个单倍型。在两种 PsyA1-a 单倍型中,1 型单倍型具有较高的全粉重、面粉亮度和面粉红度,较低的黄色素含量和面粉黄度。本研究开发的 KASP 标记和 PsyA1 多态性标记适合用于分子标记辅助选择,以改良小麦的 FW。
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引用次数: 0
The Serratia sp. strain C2 confers tomato tolerance to high salt, virus infection and both stresses in combination Serratia sp. 菌株 C2 可使番茄耐受高盐、病毒感染以及两种胁迫的共同作用
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-04 DOI: 10.1016/j.cpb.2024.100390
Besides increasing plant growth, several Plant Growth Promoting Rhizobacteria (PGPR), can enhance tolerance to biotic and/or abiotic stresses of numerous plant species. While cultivated plants are frequently subject to combined stresses in the field, there is limited knowledge of the effect of PGPR on plants undergoing simultaneous stress conditions. Therefore, we tested the beneficial properties of the halotolerant PGPR Serratia sp. strain C2, previously shown to enhance salt stress tolerance in barley, on tomato plants exposed to salinity, to Potato Virus Y (PVY) infection, and both stresses simultaneously. In our experimental conditions, C2 inoculation improved tomato tolerance to salt stress and positively correlated with a 46–68 % decrease in the level of PVY RNA compared to non-inoculated tomato plants. Morphometric, physiological and biochemical analyses (e.g., chlorophyll, sugar and proline accumulation, oxidative stress status and NDVI) indicated that C2 treatments had beneficial effects on tomato growth under simple and combined stress conditions. This is the first report of a PGPR enhancing tolerance not only to individually induced salinity and PVY infection, but also to both stresses in combination. Moreover, the expression analysis of selected genes involved in stress responses and RNA silencing-mediated antiviral immunity suggests that C2 can interfere with distinct defence response pathways to enhance stress tolerance in tomato. These pioneering results support the perspective of using PGPR as multi-spectrum and multi-host biostimulants for improving plant growth and protection from biotic, abiotic, and combined stresses to promote sustainable crop production in the face of environmental changes.
除了能促进植物生长外,一些植物生长促进根瘤菌(PGPR)还能增强许多植物物种对生物和/或非生物胁迫的耐受性。虽然栽培植物在田间经常会受到综合胁迫,但人们对 PGPR 对同时受到胁迫的植物的影响了解有限。因此,我们测试了耐盐 PGPR Serratia sp. 菌株 C2 的有益特性,该菌株以前曾被证明能增强大麦对盐胁迫的耐受性。在我们的实验条件下,接种 C2 提高了番茄对盐胁迫的耐受性,与未接种的番茄植株相比,PVY RNA 水平下降了 46-68 %,两者呈正相关。形态、生理和生化分析(如叶绿素、糖和脯氨酸积累、氧化应激状态和 NDVI)表明,在简单和综合胁迫条件下,C2 处理对番茄生长有利。这是首次报道一种 PGPR 不仅能增强对单独诱导的盐度和 PVY 感染的耐受性,还能增强对这两种胁迫共同作用的耐受性。此外,对涉及胁迫反应和 RNA 沉默介导的抗病毒免疫的选定基因的表达分析表明,C2 可以干扰不同的防御反应途径,从而增强番茄的胁迫耐受性。这些开创性的结果支持了利用 PGPR 作为多谱系和多寄主生物刺激剂来改善植物生长和保护植物免受生物、非生物和综合胁迫的观点,从而促进面对环境变化的可持续作物生产。
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引用次数: 0
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Current Plant Biology
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