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Functional resilience: An active oxidative phosphorylation system prevails amid foreign proteins in holoparasitic plants 功能恢复力:全寄生植物的外来蛋白质中普遍存在活跃的氧化磷酸化系统
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-17 DOI: 10.1016/j.cpb.2024.100322
L.M. Gatica-Soria , M.V. Canal , M.E. Roulet , H. Sato , V. Gómez Villafañe , E. Welchen , M.V. Sanchez-Puerta

Mitonuclear incompatibility results from a breakdown of the coordinated function between co-evolved genes located in nuclear and mitochondrial compartments. Horizontal Gene Transfer (HGT), involving the acquisition of genes from unrelated species, can trigger mitonuclear incompatibilities when foreign gene products interact with native ones, particularly in multisubunit complexes. Recent findings highlighted rampant HGT in the mitochondrial genomes of holoparasitic plants of the genus Lophophytum (Balanophoraceae). In Lophophytum, some mitochondrial genes involved in the Oxidative Phosphorylation (OXPHOS) system were acquired from their legume hosts, unlike the nuclear-encoded OXPHOS subunits, which remain native. This unique configuration of a doubly chimeric OXPHOS, combining native nuclear-encoded subunits with both foreign and native mitochondrial-encoded subunits, raises questions regarding the potential effects of the interactions between native and foreign proteins on mitochondrial respiration activity in Lophophytum. We examined the mitochondrial ultrastructure, evaluated protein expression via Western blots, and analyzed cellular respiration through oxygen consumption rates and adenylate content in these holoparasitic plants. Surprisingly, our results revealed no disruption of the OXPHOS machinery or activity in Lophophytum despite the functional replacement of several native protein subunits by foreign homologs. Furthermore, there was no apparent impact on the OXPHOS system given their parasitic lifestyle and complete loss of photosynthesis.

有丝分裂核不相容是由于位于核区和线粒体区的共同进化基因之间的协调功能失调造成的。水平基因转移(HGT)涉及从不相干的物种获取基因,当外来基因产物与本地基因产物相互作用时,尤其是在多亚基复合体中,会引发有丝分裂核不相容。最近的研究结果表明,全寄生植物 Lophophytum 属(Balanophoraceae)线粒体基因组中的 HGT 非常猖獗。在 Lophophytum 中,一些参与氧化磷酸化(OXPHOS)系统的线粒体基因是从豆科宿主那里获得的,而核编码的 OXPHOS 亚基则不同,它们仍然是原生的。这种双重嵌合 OXPHOS 的独特结构将本地核编码亚基与外来和本地线粒体编码亚基结合在一起,从而引发了关于本地和外来蛋白质之间的相互作用对叶绿体线粒体呼吸活性的潜在影响的问题。我们检查了线粒体的超微结构,通过 Western 印迹评估了蛋白质的表达,并通过耗氧率和腺苷酸含量分析了这些全寄生植物的细胞呼吸。令人惊讶的是,我们的研究结果表明,尽管外来同源物在功能上取代了几种本地蛋白亚基,但在 Lophophytum 中并没有破坏 OXPHOS 机制或活性。此外,鉴于它们的寄生生活方式和完全丧失的光合作用,对 OXPHOS 系统也没有明显的影响。
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引用次数: 0
Bacillus siamensis strain BW enhances rice growth and salinity tolerance through redox equilibrium and hormone modulation 暹罗芽孢杆菌 BW 菌株通过氧化还原平衡和激素调节提高水稻的生长和耐盐性
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-15 DOI: 10.1016/j.cpb.2024.100321
Brahim Oubaha , Ray Singh Rathore , Jayram Bagri , Nitin Kumar Singhal , Koushik Mazumdar , Vikas Rishi , Ashwani Pareek , Sneh Lata Singla-Pareek

High soil salinity has an unfavorable consequence on the growth and productivity of rice crop. However, some salt-tolerant plant growth-promoting bacteria (ST-PGPB) regulate specific physiological, biochemical, and molecular properties to promote crop growth while minimizing the detrimental effects of salt stress. In this regard, we isolated ST-PGPB from rhizospheric soil and examined it to mitigate the salinity stress in rice seedlings. The growth of the bacterium at 3 M NaCl demonstrated its halotolerance, and 16S rRNA sequencing identified it as Bacillus siamensis, and the isolated strain was named BW. Further study indicated that biopriming with BW strain helps plant growth promotion-related phenotype and significantly mitigates salinity stress in rice seedlings. Treatment of rice seeds with BW resulted in significantly improved germination of seedlings at 75 mM to 150 mM NaCl, along with better physiology and biochemical parameters than the untreated ones. Furthermore, Bacillus sp. BW efficiently colonizes rice roots and produces auxin and siderophore, via forming biofilm under different salt concentrations. Under 100–200 mM NaCl treatment conditions, the extracellular metabolite profile from BW showed a substantial abundance in specific metabolites, such as osmoprotective chemicals, suggesting the likely protective mechanism against salinity stress damage. This study demonstrates the role and potential of a halotolerant- BW strain in supporting the growth of rice plants under salinity conditions.

土壤盐分过高会对水稻作物的生长和产量造成不利影响。然而,一些耐盐植物生长促进菌(ST-PGPB)能调节特定的生理、生化和分子特性,在促进作物生长的同时,将盐胁迫的不利影响降至最低。为此,我们从根瘤土壤中分离出 ST-PGPB,并对其缓解水稻幼苗的盐胁迫进行了研究。该细菌在 3 M NaCl 条件下的生长证明了其耐盐性,16S rRNA 测序确定其为暹罗芽孢杆菌,并将分离的菌株命名为 BW。进一步的研究表明,用 BW 菌株进行生物处理有助于植物生长促进相关表型的形成,并能显著缓解水稻幼苗的盐胁迫。用 BW 处理水稻种子后,在 75 mM 至 150 mM NaCl 的条件下,秧苗的发芽率明显提高,生理生化指标也优于未处理的秧苗。此外,在不同盐浓度下,BW 杆菌通过形成生物膜有效地定植于水稻根部,并产生辅酶和苷元。在 100-200 mM NaCl 处理条件下,BW 的胞外代谢物图谱显示出大量的特定代谢物,如渗透保护化学物质,这表明其可能具有抵御盐胁迫损伤的保护机制。这项研究证明了耐盐碱 BW 菌株在盐碱条件下支持水稻植物生长的作用和潜力。
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引用次数: 0
Evaluation of castor pistillate lines and analysis of mode of inheritance for resistance to Fusarium wilt disease in castor (Ricinus communis L.) 蓖麻雌花品系的评价及蓖麻(Ricinus communis L.)抗镰刀菌枯萎病遗传模式的分析
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-13 DOI: 10.1016/j.cpb.2024.100319
C. Deepika , S.R. Venkatachalam , A. Yuvaraja , P. Arutchenthil , N. Indra , V. Ravichandran , P. Veeramani , P. Kathirvelan

Castor is an industrially economic and valuable oilseed crop cultivated worldwide. There is a constant upsurge in demand for its oil. But wilt caused by Fusarium spp. is a devastating disease that severely affects the productivity depending upon the crop stage. Stable high yielding pistillate lines serve as donors in heterosis breeding programme and for further biotechnological advancements. Genetic characterization of wilt resistance indicated the role of duplicate dominant epistasis in YTP 1 × TMV 5, complementary epistasis in DPC 9 × JP 65 and JP 65 × SKI 215, duplicate recessive epistasis in YRCP 1 × DPC 9. Monogenic recessive nature of wilt resistance was reported in other four cross combinations viz., YRCP 2 × JP 65, SKP 84 × JP 65, YRCP 2 × DPC 9 and YRCP 2 × SKP 84. Magnified images taken using LED phase contrast microscope portrayed the presence of microconidia and macroconidia and Scanning Electron Microscope (SEM) image analysis showed the presence of intact internal cell structures in resistant check (48−1) while the cell structures were disturbed with mycelial growth in the susceptible check (JI 35). Among 21 pistillate lines screened, seven viz., DPC 9, DPC 16, SKP 84, JP 96, GEETA, M 574 and M 619–1 were resistant. By screening P1, P2, F1, F2, BC1F1 (P1) and BC1F1 (P2) generations of eight crosses under field and pot test method, the stable pistillate line DPC 9 was found to be wilt resistant. F1 generation plants expressed 100% susceptibility indicating the recessive nature of wilt resistance. JP 65 × SKI 215 and YRCP 1 × DPC 9 showed the minimum incidence comparing other F2 populations. The backcross (YRCP 1 × DPC 9) × DPC 9 was found to possess the lowest wilt incidence compared to other populations under field and green house condition. Hence the identified lines could be better used to develop wilt resistant high yielding hybrid and for further identifying and introgressing genomic regions conferring wilt resistance to high yielding popular variety through linkage/QTL mapping technique.

蓖麻是一种具有工业经济价值的油籽作物,在世界各地都有种植。对蓖麻油的需求不断激增。但由镰刀菌属引起的枯萎病是一种毁灭性病害,会严重影响作物不同阶段的产量。稳定的高产雌花品系可作为异交育种计划和进一步生物技术进步的供体。枯萎病抗性的遗传特征表明,在 YTP 1 × TMV 5 中存在重复显性外显子,在 DPC 9 × JP 65 和 JP 65 × SKI 215 中存在互补外显子,在 YRCP 1 × DPC 9 中存在重复隐性外显子。其他四个杂交组合(即 YRCP 2 × JP 65、SKP 84 × JP 65、YRCP 2 × DPC 9 和 YRCP 2 × SKP 84)的枯萎病抗性具有单基因隐性。使用 LED 相衬显微镜拍摄的放大图像显示存在微子囊和大子囊,扫描电子显微镜(SEM)图像分析显示抗性对照(48-1)存在完整的内部细胞结构,而感病对照(稷35)的细胞结构受到菌丝生长的干扰。在筛选的 21 个雌花品系中,有 7 个品系(即 DPC 9、DPC 16、SKP 84、JP 96、GEETA、M 574 和 M 619-1)具有抗性。通过田间和盆栽试验法筛选 8 个杂交种的 P1、P2、F1、F2、BC1F1(P1)和 BC1F1(P2)代,发现稳定的雌蕊品系 DPC 9 具有抗枯萎病能力。F1 代植株对枯萎病的感病率为 100%,表明抗枯萎病性为隐性。与其他 F2 群体相比,JP 65 × SKI 215 和 YRCP 1 × DPC 9 的发病率最低。在田间和温室条件下,回交品系(YRCP 1 × DPC 9)×DPC 9 的枯萎病发病率与其他品系相比最低。因此,所鉴定的品系可以更好地用于开发抗枯萎病的高产杂交种,并通过连接/QTL 图谱技术进一步鉴定和导入赋予高产流行品种抗枯萎病能力的基因组区域。
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引用次数: 0
Comparative physiological, biochemical and proteomic analyses reveal key proteins and crucial regulatory pathways related to drought stress tolerance in faba bean (Vicia faba L.) leaves 生理、生化和蛋白质组比较分析揭示了蚕豆叶片耐干旱胁迫相关的关键蛋白质和重要调控途径
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-11 DOI: 10.1016/j.cpb.2024.100320
Ghassen Abid , Moez Jebara , Frédéric Debode , Didier Vertommen , Sébastien Pyr dit Ruys , Emna Ghouili , Salwa Harzalli Jebara , Rim Nefissi Ouertani , Mohamed El Ayed , Ana Caroline de Oliveira , Yordan Muhovski

Drought is one of the important abiotic factors that affect faba bean growth and productivity in the Mediterranean region. In order to study the response of faba bean plant to water-deficit stress, a physiological and proteomic analysis was carried out in leaf tissue. All physiological parameters were affected by drought. The physiological mechanism underlying the response of faba bean leaves to water-deficit was therefore attributed to the alleviation of oxidative stress via the accumulation of proline and to the synergistic action of the antioxidant enzyme system (CAT, SOD, APX and GPOX). Proteomic analysis identified 2000 proteins from faba bean leaves, of which were 81 differentially expressed. Of those, 36 were downregulated and 45 were upregulated under water-deficit treatment. KEGG and GO enrichments indicated differentially abundant proteins (DAPs) related to photosynthesis, antioxidants and ROS detoxifying enzymes, biosynthesis of amino acids and secondary metabolites, molecular chaperones, signal transduction, energy and carbohydrate metabolism and metabolic enzymes. The current results provide evidence for a complex synergetic pathway, in which ROS detoxification mechanisms and photoprotection constituted the major aspect of water-deficit tolerance in faba bean leaves. These results offer a foundational basis regarding the molecular mechanism involved in drought resistance within the faba bean species.

干旱是影响地中海地区蚕豆生长和产量的重要非生物因素之一。为了研究蚕豆植物对缺水胁迫的反应,对叶片组织进行了生理和蛋白质组分析。所有生理参数都受到干旱的影响。因此,蚕豆叶片对缺水反应的生理机制是通过脯氨酸的积累和抗氧化酶系统(CAT、SOD、APX 和 GPOX)的协同作用减轻氧化应激。蛋白质组分析确定了蚕豆叶片中的 2000 种蛋白质,其中 81 种有差异表达。在缺水处理条件下,其中 36 个蛋白下调,45 个蛋白上调。KEGG 和 GO 富集表明,差异表达量丰富的蛋白质(DAPs)与光合作用、抗氧化剂和 ROS 解毒酶、氨基酸和次生代谢物的生物合成、分子伴侣、信号转导、能量和碳水化合物代谢以及代谢酶有关。目前的研究结果为一个复杂的协同途径提供了证据,其中 ROS 解毒机制和光保护构成了蚕豆叶片耐缺水的主要方面。这些结果为研究蚕豆抗旱的分子机制提供了基础。
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引用次数: 0
Salt-excluder rootstock improves physio-biochemical responses of grafted grapevine plants subjected to salinity stress 排盐砧木改善了嫁接葡萄植株在盐分胁迫下的生理生化反应
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-07 DOI: 10.1016/j.cpb.2023.100316
Elania Freire da Silva , Hugo Rafael Bentzen Santos , Jean Pierre Henry Balbaud Ometto , Alexandre Maniçoba da Rosa Ferraz Jardim , Thieres George Freire da Silva , Pedro José Hermínio , Adriano Nascimento Simões , Eduardo Souza , Sérgio Luiz Ferreira-Silva

This study tests the hypothesis that a more salt-excluder rootstock can attenuate salt stress in grapevine plants by enhancing photosynthesis and providing ionic and oxidative protection. Plants of ‘BRS Vitória’ variety, grafted with the rootstocks IAC 313 (salt-excluder) and SO4, were subjected to salinity by adding NaCl (0, 50, and 100 mM) for 30 days. Plants with SO4 showed more severe salt toxicity symptoms in leaves and lower chlorophyll content under salinity. Conversely, plants with IAC 313 showed improved photosynthesis and stomatal conductance, along with higher carboxylation efficiency under salt compared to SO4. Under salinity, plants with SO4 showed higher losses of K+ in stems, roots, and petioles, as well as increased accumulation of Na+ in these organs, relative to IAC 313. Furthermore, plants with IAC 313 had lower leaf Na+ content under salinity and reduced leaf Cl content at 50 mM NaCl, a response associated with a higher Na+ allocation in petioles of IAC 313. At 50 mM, IAC 313 exhibited better photochemical activity, as indicated by electron transport rate and non-photochemical quenching. However, at 100 mM, both rootstocks showed similar trends, suggesting that the photosynthetic restriction was primarily due to stomatal disturbances. Plants with IAC 313 showed better APX activity and ascorbate balance under salinity. IAC 313 showed more salt-resistance traits than SO4, although the growth was similarly affected in both rootstocks. This response could be due to the reduced time of salt treatment (30 days). In summary, our data indicate that IAC 313 rootstock possesses better salt tolerance traits than SO4.

本研究验证了一个假设,即盐分排除能力更强的砧木可以通过提高光合作用和提供离子及氧化保护来减轻葡萄植株的盐分胁迫。用IAC 313(排盐砧木)和SO4砧木嫁接'BRS Vitória'品种的植株,通过添加NaCl(0、50和100 mM)进行为期30天的盐渍化试验。在盐度条件下,SO4 的植株叶片表现出更严重的盐毒症状,叶绿素含量也更低。相反,与 SO4 相比,施用 IAC 313 的植物在盐分条件下光合作用和气孔导度得到改善,羧化效率更高。在盐度条件下,与 IAC 313 相比,施用 SO4 的植株在茎、根和叶柄中的 K+ 损失更多,在这些器官中的 Na+ 积累也更多。此外,在盐度条件下,IAC 313 植物的叶片 Na+ 含量较低,在 50 mM NaCl 条件下,叶片 Cl- 含量降低,这种反应与 IAC 313 叶柄中较高的 Na+ 分配有关。在 50 毫摩尔条件下,IAC 313 表现出更好的光化学活性,电子传递速率和非光化学淬灭表明了这一点。然而,在 100 毫摩尔浓度下,两种砧木表现出相似的趋势,表明光合作用受限主要是由于气孔干扰造成的。IAC 313 的植株在盐度条件下表现出更好的 APX 活性和抗坏血酸平衡。IAC 313 比 SO4 表现出更强的抗盐性,尽管两种砧木的生长受到的影响相似。这种反应可能是由于盐处理的时间(30 天)缩短了。总之,我们的数据表明,IAC 313 砧木比 SO4 具有更好的耐盐性状。
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引用次数: 0
Decoding the features and potential roles of respiratory burst oxidase homologs in bread wheat 解码面包小麦呼吸猝灭氧化酶同源物的特征和潜在作用
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-30 DOI: 10.1016/j.cpb.2023.100315
Yashraaj Sharma , Ishu , Shumayla , Sameer Dixit , Kashmir Singh , Santosh Kumar Upadhyay

Respiratory burst oxidase homolog (RBOH) proteins in plants generate reactive oxygen species (ROS) in the apoplast to regulate developmental processes and stress responses. Herein, a total of 40 TaRBOH genes are identified in the genome of Triticum aestivum by a genome-wide search using the latest database. Phylogenetic analysis separated the RBOH proteins into five clusters and close clustering suggested an evolutionary relationship among them. The presence of duplication events (DEs) and the nature of selection (purifying) during evolutionary analysis revealed their role in the expansion of the TaRBOH gene family. The interaction analyses revealed their extended roles and coordinated functioning with various stress-related signaling pathways, including ABA- and Ca2+-signaling. Expression profiling in different tissue developmental stages and under stress conditions disclosed their involvement in growth, development and stress responses. In addition, the presence of assorted groups of cis-regulatory elements, interaction with the diverse nature of transcription factors and miRNA related to plant development, hormones and various stresses further suggested their association with developmental and stress-responsive pathways. This study provides inclusive information related to the functioning of TaRBOH genes in bread wheat and would provide a valuable reference for their functional characterization for crop improvement.

植物中的呼吸爆发氧化酶同源物(RBOH)蛋白在细胞凋亡体中产生活性氧(ROS),调节发育过程和胁迫反应。本文利用最新的数据库,通过全基因组搜索,在小麦(Triticum aestivum)基因组中发现了 40 个 TaRBOH 基因。系统进化分析将 RBOH 蛋白分为五个群,密切的聚类表明它们之间存在进化关系。在进化分析过程中,重复事件(DE)的存在和选择(纯化)的性质揭示了它们在 TaRBOH 基因家族扩展过程中的作用。相互作用分析表明了它们的扩展作用以及与各种胁迫相关信号通路(包括 ABA 信号和 Ca2+ 信号)的协调功能。不同组织发育阶段和胁迫条件下的表达谱分析显示,它们参与了生长、发育和胁迫响应。此外,各种顺式调控元件组的存在,以及与植物发育、激素和各种胁迫相关的转录因子和 miRNA 的相互作用进一步表明它们与发育和胁迫响应途径有关。这项研究提供了有关面包小麦中 TaRBOH 基因功能的全面信息,将为作物改良中的功能表征提供有价值的参考。
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引用次数: 0
Efficacious use of Micrococcus yunnanensis GKSM13 for the growth of rice seedlings under copper stress with elucidation into genomic traits 利用云南微球菌 GKSM13 促进水稻秧苗在铜胁迫下的生长并阐明其基因组性状
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-30 DOI: 10.1016/j.cpb.2023.100318
Krishnendu Majhi , Moitri Let , Rajib Bandopadhyay

Rice is widely cultivated worldwide, and beneficial bactrial colonization are particularly desirable for sustainable agriculture because they promote growth and production by preventing excessive heavy metal contamination. The present study was conducted with the aim of improving the growth of rice seedlings (MTU1010 variety) under copper (Cu) stress by using Cu-tolerant plant growth promoting bacteria (PGPB) Micrococcus yunnanensis GKSM13. Strain GKSM13 was able to produce plant growth promoting factors (PGPFs) such as indole-3-acetic acid (IAA), gibberellin A3 (GA3) and ammonia, accumulate proline, fix N2, and inhibit 2,2-Diphenyl-1-picrylhydrazyl (DPPH). Rice seedlings treated with Cu2+ and co-inoculated with GKSM13 significantly improved their growth in morphological and biochemical aspects. When analysed by field emission scanning electron microscope (FE-SEM), GKSM13 was found to be associated with the root cells in the form of large number of coccoid cells. The uptake of Cu2+ in rice seedlings was reduced to 57.5% in the presence of GKSM13. Strain GKSM13 treatment also reduced Cu-induced oxidative stress of rice seedlings by activating antioxidant enzymes including superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APOX) and glutathione peroxidase (GPOX), which was supported by DPPH inhibition and reduction of malondialdehyde (MDA) accumulation. Insight into the genome of strain GKSM13 reveals the presence of tryptophan (trp), ent-kaurene, cyanase (cyn), phosphate-specific transport (pst), major facilitator superfamily transporter (MFS), sulphate transporter (cys), proline (pro) and SOD (sod) genes, which are responsible for promoting plant growth and alleviating Cu2+ stress. Therefore, the application of strain M. yunnanensis GKSM13 could provide a sustainable agricultural solution for Cu-affected mining areas.

水稻在全球范围内广泛种植,有益菌群对可持续农业尤为重要,因为它们可以防止过量的重金属污染,从而促进生长和产量。本研究旨在利用耐铜植物生长促进菌(PGPB)云南微球菌 GKSM13 来改善水稻幼苗(MTU1010 品种)在铜胁迫下的生长状况。菌株 GKSM13 能够产生吲哚-3-乙酸(IAA)、赤霉素 A3(GA3)和氨等植物生长促进因子(PGPFs),积累脯氨酸,固定 N2,抑制 2,2-二苯基-1-苦基肼(DPPH)。经 Cu2+ 处理并与 GKSM13 共同接种的水稻秧苗在形态和生化方面的生长情况都有明显改善。用场发射扫描电子显微镜(FE-SEM)分析发现,GKSM13 以大量茧状细胞的形式与根细胞结合在一起。在 GKSM13 的存在下,水稻秧苗对 Cu2+ 的吸收率降低到 57.5%。菌株 GKSM13 还能激活超氧化物歧化酶 (SOD)、过氧化氢酶 (CAT)、抗坏血酸过氧化物酶 (APOX) 和谷胱甘肽过氧化物酶 (GPOX) 等抗氧化酶,从而降低 Cu 诱导的水稻秧苗氧化应激。对菌株 GKSM13 基因组的深入研究表明,该菌株含有色氨酸(trp)、ent-kaurene、氰酶(cyn)、磷酸盐特异性转运(pst)、主要促进剂超家族转运体(MFS)、硫酸盐转运体(cys)、脯氨酸(pro)和 SOD(sod)基因,这些基因具有促进植物生长和缓解 Cu2+ 胁迫的作用。因此,应用云南滇金丝猴 GKSM13 菌株可为受铜影响的矿区提供可持续的农业解决方案。
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引用次数: 0
Identification and characterization of sub-group 4 R2R3-MYB members and their functions in phenylpropanoid and flavonoid regulation in tobacco 第 4 亚群 R2R3-MYB 成员的鉴定和表征及其在烟草中调节苯丙类和黄酮类化合物的功能
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-28 DOI: 10.1016/j.cpb.2023.100317
Yinchao Zhang , Xiuchun Li , Xiaoling Qu , Min Ren , Ying Tong , Xiuming Wu , Yangyang Sun , Jun Yang , Fengyan Wu , Aiguo Yang , Shuai Chen

Sub-group 4 R2R3-type MYB transcription factors (TFs) are involved in repression of the phenylpropanoid pathway. In this study, we identified and characterized three MYB transcriptional repressors in common tobacco, named NtMYB1, NtMYB2, and NtMYB4, which belong to sub-group 4 members. Tissue expression properties and specificity of stress-induced expression indicated that the NtMYB1, NtMYB2, and NtMYB4 may perform different functions in tobacco. Overexpression of NtMYB1, NtMYB2, and NtMYB4 reduced phenylpropanoids and flaonoid compounds, such as caffeic acid, chlorogenic acid, neochlorogenic acid, and rutin, respectively. Meanwhile, the expression of the most structural genes involved in phenylpropanoids and flavonoids were reduced in the overexpression transgenic lines. In addition, results based on co-expression and expression analyses revealed possible interactions between NtMYB1, NtMYB2, and NtMYB4 and multiple bHLH TFs. Our results showed that the three sub-group 4 R2R3 members exhibited different expression pattern in various tissues and under abiotic stress conditions. Meanwhile, we hypothesized that the three of them involved in the inhibition of phenylpropanoid and flavonoid biosynthesis might be interaction with bHLH TFs.

第 4 亚群 R2R3 型 MYB 转录因子(TFs)参与抑制苯丙酮途径。本研究发现并鉴定了普通烟草中的三种 MYB 转录抑制因子,分别命名为 NtMYB1、NtMYB2 和 NtMYB4,它们属于亚群 4 成员。组织表达特性和胁迫诱导表达的特异性表明,NtMYB1、NtMYB2 和 NtMYB4 可能在烟草中发挥不同的功能。过量表达 NtMYB1、NtMYB2 和 NtMYB4 会分别减少咖啡酸、绿原酸、新绿原酸和芦丁等苯丙类和类黄酮化合物。同时,在过表达转基因品系中,参与苯丙酮类化合物和黄酮类化合物的大部分结构基因的表达量都有所降低。此外,基于共表达和表达分析的结果显示,NtMYB1、NtMYB2和NtMYB4与多个bHLH TFs之间可能存在相互作用。我们的研究结果表明,R2R3第4亚群的三个成员在不同组织和非生物胁迫条件下表现出不同的表达模式。同时,我们推测它们三者参与抑制苯丙类和黄酮类化合物的生物合成可能是与 bHLH TFs 相互作用的结果。
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引用次数: 0
Genomics breeding approaches for developing Sorghum bicolor lines with stress resilience and other agronomic traits 开发具有抗逆性和其他农艺性状的高粱双色系的基因组育种方法
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-23 DOI: 10.1016/j.cpb.2023.100314
Vinutha Kanuganhalli Somegowda , S.E. Diwakar Reddy , Anil Gaddameedi , K.N.S. Usha Kiranmayee , Jalaja Naravula , P.B. Kavi Kishor , Suprasanna Penna

Sorghum, also known as great millet, is a major cereal crop that feeds over 500 million people in more than 100 countries, especially in Africa and Asia. It can grow well under harsh environmental conditions, such as drought, heat, salinity, and soils that are nutritionally poor. The crop is water- and nitrogen-efficient with C4 photosynthesis system and a relatively small genome of about 730 Mb. Its genome has been sequenced and annotated, revealing significant genetic variation and genomics resources. Despite being drought tolerant, there is a great degree of variation among the diverse lines of germplasm for drought and drought associated traits, and hence resilience to drought and other stresses need to be studied through the integration of phenomics and genomics technologies. There is an urgent need to adopt advanced genomics and high-throughput technologies to find candidate genes and alleles for crop traits, develop molecular markers and genomic selection (GS) models, create new genetic variation and design sorghum ideotypes that suit to the changing climate.

高粱,又称小米,是一种主要谷类作物,为 100 多个国家,特别是非洲和亚洲的 5 亿多人提供食物。它能在干旱、炎热、盐碱和营养不良的土壤等恶劣环境条件下生长良好。这种作物节水节氮,具有 C4 光合作用系统,基因组相对较小,约为 730 Mb。对其基因组进行了测序和注释,发现了大量遗传变异和基因组学资源。尽管耐旱,但不同种质之间在干旱和干旱相关性状方面存在很大程度的差异,因此需要通过表型组学和基因组学技术的整合来研究对干旱和其他胁迫的恢复能力。目前迫切需要采用先进的基因组学和高通量技术来寻找作物性状的候选基因和等位基因,开发分子标记和基因组选择(GS)模型,创造新的遗传变异,并设计出适合不断变化的气候的高粱表意型。
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引用次数: 0
Differentially expressed genes in Jojoba (Simmondsia chinensis) when subjected to water-stress 荷荷巴(Simmondsia chinensis)在水胁迫下的差异表达基因
IF 5.4 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-19 DOI: 10.1016/j.cpb.2023.100311
Othman Al-Dossary , Agnelo Furtado , Ardashir KharabianMasouleh , Bader Alsubaie , Ibrahim Al-Mssallem , Robert J. Henry

Jojoba (Simmondsia chinensis) is a desert shrub with an ability to survive in extremely arid environments. The exceptional drought tolerance of jojoba includes traits that could be useful in developing drought tolerant crop plants. This study characterized changes in gene expression in jojoba under water-stress during a controlled-environment experiment. A large number of transcripts (10,936) were identified as differentially expressed under contrasting water stress conditions. These included transcripts corresponding to antioxidant activity-related genes such as superoxide dismutase, defense response genes such as Pathogenesis-Related 4 (PR4), water molecule bio-channels such as aquaporins, cell membrane protectants such as Late Embryogenesis Abundant (LEA), and growth regulators such as 1-aminocyclopropane-1-carboxylic acid (ACC). A total of 880 novel transcripts were identified as representing possible novel genes associated with jojoba subjected to water stress. There were also many transcripts linked to transcriptional regulation that were expressed in response to water-stress in jojoba. Many male-specific transcripts corresponding to stress-related genes and transcription regulators were differentially expressed under water-stress with 1928 differentially expressed transcripts that aligned to the two Y chromosome-specific regions Y1 and Y2. The water-stress related genes detected may help explain the drought tolerance of jojoba and provide a valuable source of genes for exploitation in providing tolerance to water stress in other species.

荷荷巴(Simmondsia chinensis)是一种沙漠灌木,能够在极端干旱的环境中生存。荷荷巴的特殊耐旱性包括可用于开发耐旱作物的特征。本研究通过受控环境实验描述了荷荷巴在水胁迫下的基因表达变化。在不同的水分胁迫条件下,大量转录本(10936 个)被鉴定为差异表达。这些转录本包括与抗氧化活性相关的基因(如超氧化物歧化酶)、防御反应基因(如病原相关 4 (PR4))、水分子生物通道(如水蒸气蛋白)、细胞膜保护剂(如胚胎发生后期丰度 (LEA))以及生长调节剂(如 1-氨基环丙烷-1-羧酸 (ACC))相对应的转录本。共鉴定出 880 个新转录本,这些转录本代表了与遭受水胁迫的荷荷巴可能相关的新基因。此外,还有许多与转录调控有关的转录本在荷荷巴的水胁迫反应中表达。许多与胁迫相关基因和转录调节因子相对应的雄性特异性转录本在水胁迫下有差异表达,其中 1928 个差异表达的转录本与两个 Y 染色体特异性区域 Y1 和 Y2 一致。检测到的与水胁迫相关的基因可能有助于解释荷荷巴的耐旱性,并为其他物种提供耐水胁迫的宝贵基因来源。
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引用次数: 0
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Current Plant Biology
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