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Pre-harvest application of sodium alginate functionalized with melatonin enhances secondary metabolism in strawberry fruit 采前施用褪黑素功能化海藻酸钠促进草莓果实次生代谢
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-07-08 DOI: 10.1016/j.cpb.2025.100515
Egli C. Georgiadou , Carlos J. García , Anna Maria Taliadorou , Stella Gedeon , Nicolas Valanides , Alice Varaldo , Gholamreza Gohari , Marta Balsells-Llauradó , Ruben Alcázar , Maarten L.A.T.M. Hertog , Francisco A. Tomás-Barberán , George A. Manganaris , Vasileios Fotopoulos
The application of priming agents is a promising strategy to enhance the nutritional content of fruits and overall fruit quality. The current study aimed to assess the effect of the pre-harvest application of various priming agents [melatonin (Mel), sodium alginate (NaA), sodium alginate/melatonin conjugate (Mel-NaA), and putrescine dihydrochloride (Put)] on fruit quality attributes and secondary metabolite profile of a strawberry cultivar (Fragaria x ananassa Duchesne cv. ‘Felicity Q3’). The priming agents were directly applied on fruit at three successive developmental stages, namely large green (LG), small white (SW) and large white (LW). The use of Mel-NaA and Put showed promising results in improving fruit quality indicators (i.e. firmness, color), while Mel-NaA and putrescine-treated fruit were characterized by increased total flavonoid content. HPLC-DAD-ESI-MS/MS data showed variable regulation of flavan-3-ols, hydroxycinnamic acids, and conjugates contents by the different treatments, while ellagitannins and ellagic acid derivatives were significantly enhanced following Mel-NaA pre-treatment. Priming treatments did not result in the differential regulation of volatile organic compounds (VOCs) in comparison with controls, suggesting that primed fruit retain their aroma quality with no aroma profile ‘penalty’. In addition, molecular analysis revealed that fruit pre-treatment with the priming agents resulted in variable transcriptional regulation of known strawberry allergenic proteins, with the Mel-NaA treatment showing no significant effect. This ‘green’ approach holds promise for advancing our understanding of the effects of NaA as a smart delivery mechanism of chemical priming agents and its potential impact on the sustainable improvement of the physicochemical attributes of strawberries during the pre-harvest stage.
应用引物剂是提高果实营养成分和整体品质的一种很有前途的策略。本研究旨在评估采前施用各种引物剂[褪黑素(Mel)、海藻酸钠(NaA)、海藻酸钠/褪黑素共轭物(Mel-NaA)和盐酸腐胺(Put)]对草莓(Fragaria x ananassa Duchesne cv)果实品质属性和次生代谢物谱的影响。“费利西蒂Q3”)。在大绿、小白、大白三个连续发育阶段直接施用引物剂。Mel-NaA和Put处理在改善果实硬度、色泽等品质指标方面效果显著,而Mel-NaA处理和腐胺处理的果实中总黄酮含量均有所增加。HPLC-DAD-ESI-MS/MS数据显示,不同处理对黄烷-3-醇、羟基肉桂酸和偶联物的含量有不同的调节,而Mel-NaA预处理显著增强了鞣花单宁和鞣花酸衍生物的含量。与对照相比,启动处理没有导致挥发性有机化合物(VOCs)的差异调节,这表明启动的水果在没有香气特征“惩罚”的情况下保持了其香气品质。此外,分子分析显示,用引物预处理的果实对已知草莓致敏蛋白的转录有不同的调节作用,Mel-NaA处理的效果不显著。这种“绿色”方法有望促进我们对NaA作为化学引发剂的智能递送机制的作用的理解,以及它对收获前阶段草莓物理化学属性可持续改善的潜在影响。
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引用次数: 0
CRISPR/Cas9 mutagenesis generated elite alleles of a novel yield gene An-1 leading to increased grain number in rice (Oryza sativa L.) CRISPR/Cas9诱变产生水稻产量新基因An-1的精英等位基因,导致水稻粒数增加
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-07-07 DOI: 10.1016/j.cpb.2025.100511
Shobica Priya Ramasamy , Sakthi Ambothi Rathnasamy , Sudha Manickam , Veeraranjani Rajagopalan , Rakshana Palaniswamy , Vignesh Mohanavel , Rohit Kambale , Manonmani Swaminathan , Kalaimagal Thiyagarajan , Raja Ragupathy , Raveendran Muthurajan
Domestication of rice (Oryza sativa L.) dates back to 8000 years ago when selection for yield traits began through artificial selection. Projected demand in rice production, yield plateau and changing climate gives us a clue that enhancing yield potential is vital for food security. Identifying genes controlling yield traits and mechanisms like C4 photosynthesis is warranted to achieve sustained increase in rice production. In this study, efforts were made to exploit a novel domestication gene An-1 for enhancing yield potential in rice through creation of targeted mutations using CRISPR/Cas9 mutagenesis. Evaluation of 312 T0 progenies of a rice cultivar ASD 16 identified 17 multi-allelic, seven bi-allelic and four mono-allelic mutations. Evaluation of T2 and T3 progenies identified homozygous and transgene free mutants possessing increased number of grains per panicle. Evaluation of T4 progenies revealed that the mutant progenies were found to possess increased secondary branches in the panicle (22.8 %), increased number of spikelets per panicle (34.8 %) and increased single plant yield (35.25 %) when compared to the wild type ASD 16. This study has identified An-1 as a novel candidate gene for yield enhancement in rice.
水稻(Oryza sativa L.)的驯化可以追溯到8000年前,当时通过人工选择开始了产量性状的选择。水稻生产的预计需求、产量平台和气候变化给我们提供了一个线索,即提高产量潜力对粮食安全至关重要。确定控制产量性状的基因和C4光合作用等机制是实现水稻持续增产的必要条件。在这项研究中,我们利用CRISPR/Cas9诱变技术,利用一种新的驯化基因An-1来提高水稻的产量潜力。对水稻品种ASD 16的312个 T0后代进行评价,鉴定出17个多等位基因突变、7个双等位基因突变和4个单等位基因突变。对T2和T3后代的评价发现了每穗粒数增加的纯合子和无转基因突变体。结果表明,与野生型ASD 16相比,T4突变体的穗次分枝增加(22.8 %),穗粒数增加(34.8 %),单株产量增加(35.25 %)。本研究发现An-1是水稻增产的一个新的候选基因。
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引用次数: 0
AgriCure: A web application based layered augmentation-enhanced YOLOv8 for disease and nutrient deficiency detection in bitter gourd leaves 农业:基于web应用程序的分层增强YOLOv8,用于苦瓜叶片的疾病和营养缺乏检测
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-07-07 DOI: 10.1016/j.cpb.2025.100517
Kamaldeep Joshi , Sumit Kumar , Varun Kumar , Rainu Nandal , Yogesh Kumar , Narendra Tuteja , Ritu Gill , Sarvajeet Singh Gill
Bitter gourd is an important cucurbitaceous vegetable widely grown in India and other tropical and subtropical regions and appreciated for its nutritional, medicinal, and economic values. Traditional way of detecting diseases and nutrient deficiencies in bitter gourd leaves requires significant effort and expertise whereas, precision farming and automated disease detection methods can greatly support farmers by facilitating sustainable agriculture To address this challenge a novel web based application AgriCure was developed which incorporated a multilevel approach to detect the plant disease and nutrient deficiency with high level. It uses a hybrid augmentation-based YOLOv8 DL model for image analysis. The study focuses on detecting diseases like Downy Mildew, Leaf Spot, and Jassid, as well as nutrient deficiencies such as Potassium, Magnesium, and Nitrogen Deficiency and their combinations. The initial dataset of 785 images was increased to 2430 images using advanced data augmentation. The results on the augmented dataset after 100 epochs demonstrated high effectiveness with the augmented dataset. The model achieved an impressive mean Average Precision (mAP50) of 92.9 % at an Intersection over Union (IoU) threshold of 0.50 and a mAP50–95 of 91.5 % across IoU thresholds from 0.50 to 0.95. Nearly all predicted positive instances were true positives, with a precision rate of 89.6 % and a recall of 86.6 %, which showed the capacity of the model in identifying true positives. The F1 score of 91.66 % highlighted balanced performance of the model between precision and recall, emphasising its reliability and accuracy. The model shows low losses, with a Box loss of 0.2435, a Class loss of 0.1689, and a Distribution Focal Loss (dfl loss) of 0.9024. This approach offered a valuable tool for early and accurate detection of disease and nutrient deficiency. Detection results indicate that, compared to previous methods, the proposed approach significantly improves overall performance and addresses challenges tied to limited dataset sizes.
苦瓜是一种重要的葫芦科蔬菜,广泛种植在印度和其他热带和亚热带地区,具有营养、药用和经济价值。传统的检测苦瓜叶片疾病和营养缺乏的方法需要大量的努力和专业知识,而精准农业和自动化疾病检测方法可以通过促进可持续农业极大地支持农民。为了解决这一挑战,开发了一种新的基于web的应用程序农业,该应用程序结合了多层次的方法来检测植物疾病和营养缺乏。它使用基于混合增强的YOLOv8 DL模型进行图像分析。该研究的重点是检测霜霉病、叶斑病和茉莉病等疾病,以及钾、镁、氮缺乏及其组合等营养缺乏症。使用高级数据增强技术,将初始数据集785张图像增加到2430张图像。在增强数据集上进行100次epoch后的结果表明,增强数据集具有较高的有效性。该模型实现了令人印象深刻的平均精度(mAP50),在交叉口交叉口(IoU)阈值为0.50时,平均精度(mAP50)为92.9 %,在IoU阈值为0.50至0.95时,平均精度(mAP50 - 95)为91.5 %。几乎所有预测的阳性实例都是真阳性,准确率为89.6 %,召回率为86.6 %,表明该模型具有识别真阳性的能力。F1得分为91.66 %,突出了模型在查准率和查全率之间的平衡表现,强调了模型的可靠性和准确性。该模型具有较低的损耗,盒损耗为0.2435,类损耗为0.1689,分布焦损耗(dfl损耗)为0.9024。这种方法为早期准确检测疾病和营养缺乏提供了有价值的工具。检测结果表明,与以前的方法相比,所提出的方法显着提高了整体性能,并解决了与有限数据集大小相关的挑战。
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引用次数: 0
Preliminary phytotoxicological screening of personal protective equipment leachates: Species-specific root growth responses in early plant stages 个人防护装备渗滤液的初步植物毒理学筛选:植物早期特定物种的根系生长反应
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-07-05 DOI: 10.1016/j.cpb.2025.100516
Enikő Mészáros , Márton Szabó , Kamilla Kovács , Etelka Kovács , Klaudia Hoffmann , Katalin Perei , Attila Bodor , Gábor Feigl
During the COVID-19 pandemic, the widespread use of single-use personal protective equipment (PPE), such as masks and gloves, led to their increasing appearance in natural environments. These items continue to be detected in plastic pollution surveys, raising concerns about their ecological impacts, as PPE waste can release smaller plastic fragments and hazardous compounds during degradation. This study examines the effects of polypropylene mask, latex, and nitrile glove leachates on early root development in 12 species of crops, including legumes, crucifers, monocots, and other dicots. Leachates were chemically characterized using humification indices and plastic aging was assessed via Fourier transform infrared spectroscopy. The results revealed species-specific phytotoxic responses. Crimson clover showed strong sensitivity to all leachates, with reduced germination, germination index, and root elongation. Among the crucifers, radish was inhibited, while white mustard and cress exhibited root stimulation under certain treatments. Buckwheat showed high sensitivity to latex leachates, while flax showed variable responses. Monocots generally tolerated PPE leachates, rice showed minimal response, and sorghum showed growth stimulation. These differences probably reflect species-specific physiological traits and the composition of the leachates. The use of multiple plant species also highlights contrasting sensitivity profiles that are not apparent in single-species tests. This preliminary screening demonstrates that PPE-derived leachates can alter early plant development in a species-dependent manner. The findings underscore the ecological risks posed by PPE waste and support the need for further studies on the environmental impact of pandemic-related plastic pollution.
在2019冠状病毒病大流行期间,口罩和手套等一次性个人防护装备的广泛使用导致它们越来越多地出现在自然环境中。在塑料污染调查中不断发现这些物品,引起了人们对其生态影响的担忧,因为个人防护用品废物在降解过程中会释放出较小的塑料碎片和有害化合物。本研究考察了聚丙烯面罩、乳胶和丁腈手套渗滤液对12种作物早期根系发育的影响,包括豆科植物、十字花科植物、单子叶植物和其他双科植物。利用腐殖化指数对渗滤液进行化学表征,利用傅里叶变换红外光谱对渗滤液进行塑料老化评价。结果显示了物种特异性的植物毒性反应。深红色三叶草对所有渗滤液均表现出较强的敏感性,其发芽率、发芽指数和根系伸长均降低。十字花科植物中,萝卜在一定处理下对根系有抑制作用,白芥和芥蓝对根系有刺激作用。荞麦对乳胶浸出液表现出较高的敏感性,而亚麻则表现出不同的敏感性。单子房对PPE渗滤液一般耐受,水稻对PPE渗滤液反应最小,高粱对PPE渗滤液有刺激作用。这些差异可能反映了物种特有的生理特征和渗滤液的组成。多种植物的使用也突出了在单物种试验中不明显的敏感性对比。这一初步筛选表明,ppe衍生的渗滤液可以以物种依赖的方式改变植物的早期发育。研究结果强调了个人防护用品废弃物造成的生态风险,并支持有必要进一步研究与大流行有关的塑料污染对环境的影响。
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引用次数: 0
Plant-microbiome responses under drought stress and their metabolite-mediated interactions towards enhanced crop resilience 干旱胁迫下植物-微生物组反应及其代谢物介导的增强作物抗逆性的相互作用
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-07-03 DOI: 10.1016/j.cpb.2025.100513
Aditya Sharma , Nandita Das , Piyush Pandey , Pratyoosh Shukla
The impacts of climate change are felt worldwide; however, drought stress poses significant challenges to global agriculture, affecting crop yields and food security. Understanding the multifaceted responses of crop plants to drought, particularly through their interaction with microbiomes and metabolites, is crucial and urgent for developing resilient agricultural systems. This review highlights the detrimental effects of drought on crop plants, including reduced water use efficiency, the production of free radicals, impaired plant growth and yield, and alterations in the photosynthetic apparatus. Additionally, this review addresses the research progress on plant responses, microbiome assemblages, metabolomic responses, and interactions under drought stress. By integrating findings from metabolomics, we discuss the “call for help” signal via root exudates in crop plants and their microbiomes during drought stress. Key aspects include the reciprocal exchange of metabolites (oxaloacetic acid, flavonoids, triterpenoids, phytoalexin, coumarin, and pyruvic acid), osmoprotectants (proline, sugars, amino acids), antioxidant enzymes (peroxidase, catalase, superoxide dismutase), and phytohormones (salicylic acid, jasmonic acid, and abscisic acid), along with the activation of stress-responsive pathways. Here, we explain the forefront of deciphering plant-microbiome interactions using cutting-edge metabolomics techniques. Therefore, this review summarizes the significance of metabolic and chemical exchanges between coexisting microorganisms to combat the escalating challenges of drought conditions effectively.
全球都能感受到气候变化的影响;然而,干旱压力对全球农业构成重大挑战,影响作物产量和粮食安全。了解作物对干旱的多方面反应,特别是通过它们与微生物组和代谢物的相互作用,对于发展抗旱农业系统至关重要且迫切。本文综述了干旱对作物的不利影响,包括水分利用效率降低、自由基产生、植物生长和产量受损以及光合器官的改变。此外,本文还综述了干旱胁迫下植物响应、微生物组组合、代谢组反应及其相互作用等方面的研究进展。通过整合代谢组学的发现,我们讨论了干旱胁迫下作物根系分泌物及其微生物组发出的“求救”信号。关键方面包括代谢物(草酰乙酸、类黄酮、三萜、植物抗毒素、香豆素和丙酮酸)、渗透保护剂(脯氨酸、糖、氨基酸)、抗氧化酶(过氧化物酶、过氧化氢酶、超氧化物歧化酶)和植物激素(水杨酸、茉莉酸和脱落酸)的相互交换,以及应激反应途径的激活。在这里,我们解释了使用尖端代谢组学技术破译植物-微生物组相互作用的前沿。因此,本文综述了共存微生物之间的代谢和化学交换对有效应对干旱条件不断升级的挑战的意义。
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引用次数: 0
Enhancing genetic diversity in Coffea arabica L. through induced mutagenesis 通过诱变提高阿拉比卡咖啡的遗传多样性
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-07-03 DOI: 10.1016/j.cpb.2025.100514
Radisras Nkurunziza , Joanna Jankowicz-Cieslak , Jan Bocianowski , Pooja Bhatnagar-Mathur , Stefaan P.O. Werbrouck , Ivan L.W. Ingelbrecht
Induced mutagenesis is a powerful tool for enhancing genetic diversity and introducing novel agronomic traits, particularly in annual seed crops. However, its application in horticultural crops like Coffea arabica remains limited. Genetic improvement in C. arabica is hindered by its narrow genetic base, long reproductive cycle and the rapid decline of wild relatives. This study evaluated the effects of ethyl methanesulfonate (EMS) and gamma irradiation on seed germination, seedling growth, flowering and fertility in C. arabica. Seedling assays revealed that low EMS concentrations (0.2–2 %) stimulated germination, while higher concentrations (4–6 %) and increasing gamma radiation doses (20–100 Gy) progressively reduced germination rates. Long-term monitoring of mature M1 plants showed that gamma irradiation induced stable mutant phenotypes such as dwarfism, altered leaf morphology and chlorophyll defects that persisted from seedling to reproductive stage. In contrast, EMS-treated M1 plants appeared phenotypically similar to wild-type controls. Both mutagens influenced flowering and seed set. Gamma irradiation (50 Gy) induced early flowering and increased sterility, while EMS caused delayed flowering with reduced sterility. Notably, the altered leaf phenotypes and chlorophyll defects were also observed in the M2 progeny, providing initial evidence of stable transmission of induced mutant traits. These findings highlight the importance of applying a range of mutagen doses to mitigate mutagen-induced infertility. They also show, for the first time, that gamma- and EMS-induced genetic variation in C. arabica can be stably transmitted, offering a promising strategy to broaden its narrow genetic base.
诱变是增强遗传多样性和引入新的农艺性状的有力工具,特别是在一年生种子作物中。然而,它在像阿拉比卡咖啡这样的园艺作物上的应用仍然有限。阿拉比卡的遗传基础狭窄,繁殖周期长,野生近缘品种迅速减少,阻碍了阿拉比卡的遗传改良。研究了甲基磺酸乙酯(EMS)和γ辐照对阿拉比卡咖啡种子萌发、幼苗生长、开花和育性的影响。幼苗试验表明,低浓度的EMS(0.2-2 %)刺激了发芽,而高浓度的EMS(4-6 %)和增加的γ辐射剂量(20-100 Gy)逐渐降低了发芽率。对成熟M1植株的长期监测表明,伽马辐照诱导的突变表型稳定,如矮化、叶片形态改变和叶绿素缺陷,从幼苗期持续到生殖期。相比之下,ems处理的M1植株在表型上与野生型对照相似。两种诱变剂都影响开花和结实子。γ辐照(50 Gy)导致开花提前,不育性增加,而EMS导致开花延迟,不育性降低。值得注意的是,在M2后代中也观察到叶片表型的改变和叶绿素缺陷,这为诱导突变性状的稳定传递提供了初步证据。这些发现强调了应用一系列诱变剂剂量来减轻诱变剂引起的不孕症的重要性。他们还首次表明,伽马和ems诱导的阿拉比卡咖啡的遗传变异可以稳定地传播,这为扩大其狭窄的遗传基础提供了一个有希望的策略。
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引用次数: 0
Integrative analysis reveals cold acclimation mechanisms in Bambusa multiplex with comparative insights from Bambusa ventricosa and Phyllostachys edulis 综合分析揭示了竹的冷驯化机制,并比较了竹和毛竹的冷驯化机制
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-06-30 DOI: 10.1016/j.cpb.2025.100512
Xiumin Zhao , Yalan Chen , Zhewei Zhang , Zishan Ahmad , Krishnamurthi Keerthana , Venkatesan Vijayakanth , Yongqi Zhi , Ming Chen , Feng Que , Muthusamy Ramakrishnan , Qiang Wei
Bambusa multiplex (cold-tolerant) and Bambusa ventricosa (cold-sensitive) were introduced to Jiangsu Province, China, beyond their natural distribution ranges, over 25 years ago. However, the mechanisms underlying cold adaptation in B. multiplex remain unclear. In this study, we investigated the physiological and anatomical responses of these two bamboo species under cold stress and conducted comparative analyses of their metabolomic and transcriptomic profiles under both cold and warm conditions. Additionally, we compared these datasets with those of Phyllostachys edulis (Moso bamboo) to gain broader insights into stress response mechanisms in bamboos. The results revealed that B. ventricosa has relatively large, thick leaves with high water content, which may contribute to its cold susceptibility. In contrast, B. multiplex has smaller, thinner leaves with lower water content and higher stomatal density, which likely enhance gas exchange and cold adaptation. Despite differences in leaf morphology, microscopic leaf anatomy (epidermis thickness, cuticle thickness, and bulliform cells) showed no significant variation, suggesting that other factors may drive cold adaptability. Distinct metabolite and gene expression profiles, including those of several transcription factors, were observed between the species under both cold and warm conditions. Specific metabolites, such as proline, catechin, and ABA, as well as stress-related pathways, such as WRKY, MYB, ABA, and proline synthesis, were highly expressed in B. multiplex under cold stress, indicating their role in cold acclimation. Comparisons between B. multiplex (8 upregulated and 11 downregulated pathways), B. ventricosa (10 upregulated and 21 downregulated pathways, including photosynthesis, receptor kinases, and stress pathways), and Moso bamboo (30 upregulated and 12 downregulated pathways) highlighted unique cold adaptation strategies for each species. Moso bamboo presented the most robust cold response, including the upregulation of the WRKY, NAC, MYB, HSF, RNA processing, and ethylene signaling pathways. Furthermore, comparative metabolome analysis revealed that these three bamboo species have evolved distinct adaptations in terms of enzyme activity and gene expression for cold acclimation, whereas core metabolic processes remain conserved.
耐冷竹(Bambusa multiplex)和冷敏感竹(Bambusa osa)是在25年前引种到中国江苏省的。然而,B. multiplex的冷适应机制尚不清楚。在本研究中,我们研究了这两种竹子在冷胁迫下的生理和解剖反应,并对它们在冷和暖条件下的代谢组学和转录组学特征进行了比较分析。此外,我们将这些数据集与毛竹(Phyllostachys edulis)的数据集进行比较,以更广泛地了解竹子的应激反应机制。结果表明,室叶草叶片较大、较厚,含水量较高,这可能是其对寒冷敏感的原因之一。相比之下,多叶草叶片更小、更薄,含水量更低,气孔密度更高,这可能增强了气体交换和冷适应能力。尽管叶片形态存在差异,但叶片微观解剖结构(表皮厚度、角质层厚度和球状细胞)没有显著差异,表明其他因素可能驱动冷适应性。在寒冷和温暖条件下,不同物种的代谢物和基因表达谱,包括几种转录因子,都被观察到。脯氨酸、儿茶素和ABA等特定代谢产物以及WRKY、MYB、ABA和脯氨酸合成等与胁迫相关的途径在冷胁迫下在多花双星中高表达,表明它们在冷驯化中起作用。通过对多花竹(8条上调途径和11条下调途径)、心室竹(10条上调途径和21条下调途径,包括光合作用、受体激酶和胁迫途径)和毛竹(30条上调途径和12条下调途径)的比较,突出了每个物种独特的冷适应策略。毛竹表现出最强烈的冷响应,包括WRKY、NAC、MYB、HSF、RNA加工和乙烯信号通路的上调。比较代谢组学分析表明,这3种竹子在冷驯化酶活性和基因表达方面进化出了不同的适应性,而核心代谢过程仍然保持保守。
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引用次数: 0
Endophytic microbiota diversity in the phyllosphere of Sicilian olive trees across growth phases and farming systems 西西里橄榄树层圈内不同生长阶段和耕作制度的内生微生物群多样性
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-06-27 DOI: 10.1016/j.cpb.2025.100510
Dalila Crucitti , Michele Sonnessa , Francesco Carimi , Tiziano Caruso , Davide Pacifico
This study investigates the diversity and interactions of endophytic microbial communities in the phyllosphere of Sicilian olive trees, focusing on both cultivated varieties (cultivars) and wild accessions. The research aims to explore the influence of anthropogenic factors, phenological stages, and farming practices on endophytic diversity. Samples were collected from three Sicilian olive cultivars subjected to two different olive cultivation management (organic and conventional) and six wild olive accessions (natural environments), across four key phenological phases. Using culture-independent methods, bacterial and fungal communities have been characterized through high-throughput sequencing. The results indicate that phenological stages and agricultural practices significantly affect microbial communities, while the type of olive host mainly affects the fungal diversity. Winter season emerged as a key period for microbial diversity, especially for bacteria, whereas fungal diversity varied less across growth phases. Organic farming management reduced bacterial diversity compared to conventional management and wild habitats. Furthermore, interactions between bacterial and fungal communities revealed positive correlations, highlighting potential synergy among endophytes. These findings underscore the dynamic nature of olive tree microbiota and suggest that both plant–microbe and microbe–microbe interactions play vital roles in structuring endophytic communities. This study is innovative as it compares, for the first time, the complete phenological cycle of local olive cultivars and wild accessions. It also analyzes the endophytic microbial community and its relationship with organic and conventional management.
以栽培品种和野生品种为研究对象,研究了西西里橄榄树叶层内内生微生物群落的多样性及其相互作用。本研究旨在探讨人为因素、物候阶段和耕作方式对内生植物多样性的影响。研究人员采集了西西里三种橄榄品种的样本,分别采用两种不同的橄榄栽培管理(有机和传统)和六种野生橄榄(自然环境),跨越四个关键物候阶段。利用不依赖培养的方法,通过高通量测序对细菌和真菌群落进行了表征。结果表明,物候阶段和农作方式显著影响微生物群落,而橄榄寄主类型主要影响真菌多样性。冬季是微生物多样性的关键时期,尤其是细菌,而真菌多样性在各个生长阶段的变化较小。与传统管理和野生栖息地相比,有机农业管理减少了细菌多样性。此外,细菌和真菌群落之间的相互作用显示出正相关,突出了内生菌之间潜在的协同作用。这些发现强调了橄榄树微生物群的动态特性,并表明植物-微生物和微生物-微生物的相互作用在构建内生群落中起着至关重要的作用。这项研究的创新之处在于,它首次比较了当地橄榄品种和野生橄榄品种的完整物候周期。分析了内生微生物群落及其与有机管理和常规管理的关系。
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引用次数: 0
Heritable variation in root emergence during post-drought recovery reveals potential links to seedling drought recovery in rice 干旱后恢复期间根系出苗的遗传变异揭示了水稻幼苗干旱恢复的潜在联系
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-06-16 DOI: 10.1016/j.cpb.2025.100509
Lukas Krusenbaum , Matthias Wissuwa , Lam Thi Dinh
Drought stress is a significant factor limiting rice yields worldwide. Effective drought tolerance involves both the ability of a plant to withstand water-limited conditions and the capacity to recover after rehydration. As rainfall patterns shift due to climate change, adaptation to variations in water availability during the growth period becomes increasingly important. Given the critical role of crown root number and length in drought response, understanding these traits is crucial. In this study, we evaluated the ability of rice genotypes to produce new crown roots following drought stress, using both a QTL mapping population and a diverse set of 3K-Rice Genomes Project accessions. Our results revealed high heritability (H² = 0.65) for new root number (NRN), as well as significant genotypic variation in NRN and new root length (NRL) during recovery. They are independent of general root vigor or drought tolerance under stress. A newly developed, simple screening method was validated in greenhouse and field trials, showing consistent genotype-specific responses, with a significant correlation (R = 0.73, p = 0.007). Varieties such as DJ123 and CHILE BORO maintained high NRN values under both water bath and soil-based recovery conditions, whereas IR64, despite producing many roots, showed limited recovery potential. Candidate loci associated with recovery-related root traits partially overlapped with known QTL for rooting ability and drought response, indicating both novel and previously characterized genomic regions. Our findings demonstrate that new root development during recovery is a distinct and heritable trait with potential for use in breeding programs.
干旱胁迫是世界范围内限制水稻产量的重要因素。有效的抗旱性既包括植物对水限制条件的承受能力,也包括补液后的恢复能力。由于气候变化导致降雨模式发生变化,适应生长期水分供应的变化变得越来越重要。考虑到冠根数和长度在干旱响应中的关键作用,了解这些性状是至关重要的。在这项研究中,我们利用一个QTL定位群体和一组不同的3k -水稻基因组计划资料,评估了水稻基因型在干旱胁迫下产生新冠根的能力。结果表明,新根数遗传力高(H²= 0.65),新根数和新根长在恢复过程中存在显著的基因型变异。它们在逆境下不受根系活力或抗旱性的影响。在温室和田间试验中验证了一种新开发的简单筛选方法,显示出一致的基因型特异性反应,相关性显著(R = 0.73, p = 0.007)。DJ123和智利BORO等品种在水浴和土基恢复条件下均保持较高的NRN值,而IR64虽然根系数量多,但恢复潜力有限。与恢复相关的根系性状相关的候选位点与已知的生根能力和干旱响应QTL部分重叠,表明这是新的和先前表征的基因组区域。我们的研究结果表明,在恢复过程中新根的发育是一种独特的可遗传性状,具有潜在的育种应用潜力。
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引用次数: 0
Sodium nitroprusside as a priming agent induces drought stress tolerance in Citrus 硝普钠诱导柑橘抗旱性
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2025-06-09 DOI: 10.1016/j.cpb.2025.100508
Emanuele Scialò , Angelo Sicilia , Angela Roberta Lo Piero
Priming is a process whereby exposure to a mild stress or specific chemical stimulus enhances plants' resilience to future biotic and abiotic stresses. Signalling molecules such as hydrogen peroxide (H2O2) and nitric oxide (NO) function as priming agents. In this study, Bitters (C22) citrus rootstock was treated with the NO donor sodium nitroprusside (SNP) and subjected to drought stress. Malondialdehyde (MDA) and H2O2 levels were measured to assess oxidative stress. Primed plants showed significantly higher tolerance to water scarcity than non-primed ones. RNA-seq analysis revealed that priming, followed by drought stress, regulated a broad spectrum of stress responses, enhancing the expression of genes involved in photosynthetic efficiency and antioxidant activity, reallocating energy, and reinforcing external barriers and xylem vessels. As concerns phytohormones, analysis of gene expression clearly indicated that auxin biosynthesis and signalling were activated, whereas those involving ethylene were repressed. Moreover, the application of weighted gene co-expression network analysis (WGCNA) enabled the identification of genes whose expression showed positive or negative correlations with the levels of MDA and/or H2O2. This study provides insights into the role of priming in improving Citrus adaptability to water scarcity and identifying molecular strategies and candidate genes to enhance drought tolerance. To our knowledge, this is the first study correlating transcriptomic data with priming-induced drought tolerance in Citrus.
启动是一个过程,暴露于温和的压力或特定的化学刺激,以提高植物对未来的生物和非生物压力的恢复能力。过氧化氢(H2O2)和一氧化氮(NO)等信号分子起着引发剂的作用。本研究采用NO供体硝普钠(SNP)处理Bitters (C22)柑橘砧木,进行干旱胁迫。测定丙二醛(MDA)和H2O2水平以评估氧化应激。处理过的植株对缺水的耐受性显著高于未处理过的植株。RNA-seq分析显示,干旱胁迫后的启动调控了广泛的胁迫反应,增强了参与光合效率和抗氧化活性、能量重新分配、强化外部屏障和木质部导管的基因的表达。在植物激素方面,基因表达分析清楚地表明生长素的生物合成和信号传导被激活,而涉及乙烯的基因则被抑制。此外,应用加权基因共表达网络分析(weighted gene co-expression network analysis, WGCNA),可以鉴定出表达与MDA和/或H2O2水平呈正相关或负相关的基因。本研究揭示了启动在提高柑橘对缺水的适应性、确定提高柑橘抗旱性的分子策略和候选基因中的作用。据我们所知,这是第一个将转录组学数据与柑桔引物诱导的耐旱性联系起来的研究。
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引用次数: 0
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Current Plant Biology
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