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Genetic dissection of flour whiteness through genome-wide association analysis in common wheat (Triticum aestivum L.) 通过全基因组关联分析剖析普通小麦(Triticum aestivum L.)
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-05 DOI: 10.1016/j.cpb.2024.100391
Jinna Hou , Hui Deng , Fuxin Xu , Shenghui Geng , Congcong Liu , Wenxu Li , Xia Shi , Zhengqing Wu , Zhensheng Lei , Zhengfu Zhou
The color of flour products has an important influence on consumer acceptance. Flour color is largely determined and measured by the index of flour whiteness (FW) in China. In this study, an association population comprising 207 wheat (Triticum aestivum) accessions originating from seven countries was used for dissection of FW-related genetic loci through genome-wide association analysis. Six quantitative trait loci (QTLs) significantly associated with FW were identified, accounting for 7.87–16.53 % of the total phenotypic variation. Four KASP markers were developed from single-nucleotide polymorphisms associated with the QTLs QFW.HAAS-1AS, QFW.HAAS-1BL, QFW.HAAS-5AL, and QFW.HAAS-7AL. The phytoene synthase-encoding gene TraesCS7A03G1357000 (TaPsyA1) was identified as a candidate gene for QFW.HAAS-7AL. Two allelic variants of TaPsyA1 (designated PsyA1-a and PsyA1-b) were differentiated on the basis of a 37 bp insertion/deletion polymorphism in the second intron. PsyA1-b included the 37 bp insertion, which led to a translational frameshift in the gene and was associated with higher FW. The PsyA1-a allele lacked the 37 bp insertion and was classified into two haplotypes according to the number of repeated ‘TC’ units in a simple sequence repeat in the promoter region. Of the two PsyA1-a haplotypes, the Type 1 haplotype conferred higher FW, flour brightness, and flour redness, and lower yellow pigment content and flour yellowness. The KASP markers and PsyA1 polymorphic markers developed in the present study are suitable for use in molecular marker-assisted selection for improvement of wheat FW.
面粉产品的色泽对消费者的接受程度有重要影响。在中国,面粉颜色主要由面粉白度(FW)指数决定和衡量。本研究通过全基因组关联分析,利用由来自 7 个国家的 207 个小麦(Triticum aestivum)品种组成的关联群体,对与面粉白度(FW)相关的遗传位点进行了分析。结果发现了 6 个与 FW 显著相关的数量性状位点(QTL),占表型总变异的 7.87-16.53%。从与 QTLs QFW.HAAS-1AS、QFW.HAAS-1BL、QFW.HAAS-5AL 和 QFW.HAAS-7AL 相关的单核苷酸多态性中开发出四个 KASP 标记。植物烯合成酶编码基因 TraesCS7A03G1357000(TaPsyA1)被确定为 QFW.HAAS-7AL 的候选基因。根据第二个内含子中 37 bp 的插入/缺失多态性,区分出 TaPsyA1 的两个等位基因变体(命名为 PsyA1-a 和 PsyA1-b)。PsyA1-b 包括 37 bp 插入,它导致基因的翻译框移位,并与较高的 FW 有关。PsyA1-a 等位基因缺乏 37 bp 插入,根据启动子区简单序列重复中 "TC "单位的重复数量被分为两个单倍型。在两种 PsyA1-a 单倍型中,1 型单倍型具有较高的全粉重、面粉亮度和面粉红度,较低的黄色素含量和面粉黄度。本研究开发的 KASP 标记和 PsyA1 多态性标记适合用于分子标记辅助选择,以改良小麦的 FW。
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引用次数: 0
The Serratia sp. strain C2 confers tomato tolerance to high salt, virus infection and both stresses in combination Serratia sp. 菌株 C2 可使番茄耐受高盐、病毒感染以及两种胁迫的共同作用
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-10-04 DOI: 10.1016/j.cpb.2024.100390
Naima Sayahi , Giorgia Sportelli , Anna Vittoria Carluccio , Chantal Ebel , Tahar Mechichi , Fabrizio Cillo , Moez Hanin , Livia Stavolone
Besides increasing plant growth, several Plant Growth Promoting Rhizobacteria (PGPR), can enhance tolerance to biotic and/or abiotic stresses of numerous plant species. While cultivated plants are frequently subject to combined stresses in the field, there is limited knowledge of the effect of PGPR on plants undergoing simultaneous stress conditions. Therefore, we tested the beneficial properties of the halotolerant PGPR Serratia sp. strain C2, previously shown to enhance salt stress tolerance in barley, on tomato plants exposed to salinity, to Potato Virus Y (PVY) infection, and both stresses simultaneously. In our experimental conditions, C2 inoculation improved tomato tolerance to salt stress and positively correlated with a 46–68 % decrease in the level of PVY RNA compared to non-inoculated tomato plants. Morphometric, physiological and biochemical analyses (e.g., chlorophyll, sugar and proline accumulation, oxidative stress status and NDVI) indicated that C2 treatments had beneficial effects on tomato growth under simple and combined stress conditions. This is the first report of a PGPR enhancing tolerance not only to individually induced salinity and PVY infection, but also to both stresses in combination. Moreover, the expression analysis of selected genes involved in stress responses and RNA silencing-mediated antiviral immunity suggests that C2 can interfere with distinct defence response pathways to enhance stress tolerance in tomato. These pioneering results support the perspective of using PGPR as multi-spectrum and multi-host biostimulants for improving plant growth and protection from biotic, abiotic, and combined stresses to promote sustainable crop production in the face of environmental changes.
除了能促进植物生长外,一些植物生长促进根瘤菌(PGPR)还能增强许多植物物种对生物和/或非生物胁迫的耐受性。虽然栽培植物在田间经常会受到综合胁迫,但人们对 PGPR 对同时受到胁迫的植物的影响了解有限。因此,我们测试了耐盐 PGPR Serratia sp. 菌株 C2 的有益特性,该菌株以前曾被证明能增强大麦对盐胁迫的耐受性。在我们的实验条件下,接种 C2 提高了番茄对盐胁迫的耐受性,与未接种的番茄植株相比,PVY RNA 水平下降了 46-68 %,两者呈正相关。形态、生理和生化分析(如叶绿素、糖和脯氨酸积累、氧化应激状态和 NDVI)表明,在简单和综合胁迫条件下,C2 处理对番茄生长有利。这是首次报道一种 PGPR 不仅能增强对单独诱导的盐度和 PVY 感染的耐受性,还能增强对这两种胁迫共同作用的耐受性。此外,对涉及胁迫反应和 RNA 沉默介导的抗病毒免疫的选定基因的表达分析表明,C2 可以干扰不同的防御反应途径,从而增强番茄的胁迫耐受性。这些开创性的结果支持了利用 PGPR 作为多谱系和多寄主生物刺激剂来改善植物生长和保护植物免受生物、非生物和综合胁迫的观点,从而促进面对环境变化的可持续作物生产。
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引用次数: 0
Enhancing sweet cherry resilience to spring frost and rain-induced cracking with pre-harvest melatonin treatments 通过采收前褪黑激素处理增强甜樱桃对春季霜冻和雨水引起的裂果的抗逆性
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-09-26 DOI: 10.1016/j.cpb.2024.100388
M.C. Ruiz-Aracil , J.M. Valverde , A. Beltrà , J.M. Lorente-Mento , A. Carrión-Antolí , D. Valero , F. Guillén
Sweet cherry producers annually confront climatic challenges such as spring frost and fruit cracking. This vulnerability arises primarily from spring frost during bloom or cracking at critical maturity stages during persistent rainfall. With changing climate patterns, innovative strategies are essential to mitigate these adversities. Foliar applications of melatonin (MT) at 0, 0.01, 0.05 and 0.1 mM were tested on the ‘Prime Giant’ and ‘Sweetheart’ cultivars over four different production cycles (2020–2023) to evaluate the effect on frost resilience on flower buds and fruit cracking reduction. MT-treated flower buds showed reduced malondialdehyde content and increased fruit set in most seasons, reducing their vulnerability to extreme weather events. In addition, MT consistently decreased sweet cherry cracking incidence across all studied seasons, indicating a strong effect between the fruit ripening stage and susceptibility to fruit cracking, which was cultivar dependent. Quality parameters at harvest, including fruit firmness, and colour at harvest, were either delayed or unaffected in MT-treated fruits compared with controls. However, other ripening parameters were stimulated by pre-harvest MT applications in several growing cycles, such as total soluble solids, which slightly reduced total acidity in MT-treated fruits. In summary, pre-harvest MT treatments can be a promising strategy for climate change adaptation and stress mitigation, potentially increasing sweet cherry production under extreme weather conditions.
甜樱桃生产者每年都要面对春季霜冻和果实开裂等气候挑战。这种脆弱性主要源于开花期的春季霜冻或关键成熟期持续降雨造成的裂果。随着气候模式的不断变化,必须采取创新策略来缓解这些不利因素。在四个不同的生产周期(2020-2023 年)内,对'Prime Giant'和'Sweetheart'栽培品种叶面喷施 0、0.01、0.05 和 0.1 毫摩尔的褪黑激素(MT)进行了测试,以评估其对花蕾抗霜冻能力和减少果实开裂的影响。经 MT 处理的花蕾在大多数季节都能降低丙二醛含量并提高坐果率,从而降低其对极端天气事件的脆弱性。此外,在所有研究季节中,MT 始终能降低甜樱桃的裂果率,这表明果实成熟阶段与果实裂果易感性之间存在很强的影响,而果实裂果与栽培品种有关。与对照组相比,经 MT 处理的果实在收获时的质量参数,包括果实硬度和颜色,要么推迟,要么不受影响。不过,在几个生长周期中,采收前施用 MT 对其他成熟参数有促进作用,例如总可溶性固形物,经 MT 处理的水果总酸度略有降低。总之,采前 MT 处理是适应气候变化和缓解压力的一种有前途的策略,有可能在极端天气条件下提高甜樱桃的产量。
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引用次数: 0
LED light treatments enhance neuroprotective properties and differentially impact phenolic compounds and triterpenoid content in Gotu Kola (Centella asiatica (L.) Urb.) LED 光处理可增强五加科拉(积雪草)的神经保护特性,并对其酚类化合物和三萜类化合物的含量产生不同影响
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-09-11 DOI: 10.1016/j.cpb.2024.100386
Melissa Soun-udom , Maria Rita Garcia , Andreia P. Oliveira , Paula B. Andrade , Srunya Vajrodaya , Sutsawat Duangsrisai , Nelson G.M. Gomes

Due to an array of medicinal properties being attributed to Gotu kola (Centella asiatica (L.) Urb.), there is a growing demand for the incorporation of the plant as an herbal ingredient in drugs, cosmetics but mainly in dietary supplements and herbal drugs, which has been causing a gradual decline on its wild population. A possible way might be the improvement of the content in bioactive constituents that, in this specific matter, have been mainly labelled as being pentacyclic triterpenoids. We hypothesize that using light-emitting diode (LED) treatments can enhance its content in bioactives and improve its neuroprotective effects. Specific LED light treatments caused a metabolic shift, globally reducing the concentrations of the triterpenoids madecassoside, asiaticoside, and their corresponding aglycones. However, LED light treatments caused a pronounced increase in specific phenolic bioactives in comparison with samples obtained under sunlight, mostly pronounced in the concentrations of di-O-caffeoylquinic acids. Principal component analysis corroborated that the improvement on the neuroinflammatory status in BV-2 microglial cells and enhanced inhibition of tyrosinase are correlated with the increase in specific phenolic constituents resulting from LED light treatments. While the anti-neuroinflammatory effects in BV-2 microglial cells are demonstrated here for the first time, our core findings are mostly crucial for meeting the increased demand for C. asiatica in herbal products, as our LED light treatment boosts yields in specific phenolic bioactives and improves neuroprotective effects.

由于五加科拉(积雪草)具有多种药用功效,人们越来越需要将这种植物作为草药成分添加到药物和化妆品中,但主要还是添加到膳食补充剂和草药中。一种可能的方法是提高生物活性成分的含量,在这个具体问题上,生物活性成分主要被标记为五环三萜类化合物。我们假设使用发光二极管(LED)处理可以提高其生物活性成分的含量,并改善其神经保护作用。特定的 LED 光处理会引起新陈代谢的转变,在整体上降低三萜类化合物马黛茶苷、积雪草苷及其相应苷醛的浓度。不过,与在阳光下获得的样本相比,LED 光处理明显增加了特定酚类生物活性物质的含量,其中以二-O-咖啡酰奎宁酸的含量最为明显。主成分分析证实,BV-2 微神经胶质细胞神经炎症状态的改善和酪氨酸酶抑制作用的增强与 LED 光处理后特定酚类成分的增加有关。虽然本文首次证明了 BV-2 小神经胶质细胞的抗神经炎症作用,但我们的核心发现对于满足草药产品中对茜草的更高需求至关重要,因为我们的 LED 光处理提高了特定酚类生物活性成分的产量,并改善了神经保护作用。
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引用次数: 0
Auxin signaling, transport, and regulation during adventitious root formation 不定根形成过程中的叶绿素信号、运输和调节
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-09-11 DOI: 10.1016/j.cpb.2024.100385
Muhamed Adem , Lata Sharma , Gyan Singh Shekhawat , Martin Šafranek , Ján Jásik
Adventitious roots (ARs) are post-embryonic roots that develop from non-root organs. These roots are vital for plant survival and are crucial for the clonal reproduction of valuable horticultural and forestry species. Despite their significance, ARs remain poorly understood. Research has shown that AR initiation and growth involve combined effects of genetic factors, growth regulators, and environmental stimuli. Cellular and molecular investigations have identified three key requirements for a cell to become an AR progenitor: it must be situated next to vascular tissue, exhibit high transcriptional activity, and undergo a redetermination of cell fate towards AR competency. The development of ARs is largely controlled by the interplay between auxins and other plant growth regulators (PGRs), such as cytokinins, ethylene, and jasmonates. Notably, the establishment of auxin concentration gradients through directional flow is essential for activating cellular processes necessary for AR formation. Recent studies have highlighted the importance of auxin-responsive genes, AUXIN RESPONSE FACTORs (ARFs) and AUXIN/INDOLE-3-ACETIC ACID REPRESSORs (Aux/IAAs) that play crucial roles in mediating AR initiation and emergence. Nevertheless, complex interactions between auxins and other PGRs remain the most enigmatic aspect of AR development. This review highlights the multifaceted roles of auxin and other PGRs in AR initiation and development, including biosynthesis, polar auxin transport, and regulation at the transcriptional, proteomic, and metabolomic levels.
不定根(AR)是由非根器官发育而成的胚后根。这些根对植物的生存至关重要,也是珍贵园艺和林业物种克隆繁殖的关键。尽管 AR 意义重大,但人们对它的了解仍然很少。研究表明,AR 的萌发和生长涉及遗传因子、生长调节剂和环境刺激的综合影响。细胞和分子研究发现了细胞成为 AR 祖细胞的三个关键条件:必须位于血管组织旁边、表现出高度的转录活性,并经历细胞命运的重新决定,以获得 AR 能力。AR的发育在很大程度上受辅助素和其他植物生长调节剂(PGRs)(如细胞分裂素、乙烯和茉莉酸盐)之间相互作用的控制。值得注意的是,通过定向流动建立辅酶浓度梯度对于激活 AR 形成所需的细胞过程至关重要。最近的研究强调了在介导 AR 启动和出现过程中发挥关键作用的辅助素响应基因、AUXIN RESPONSE FACTORs(ARFs)和 AUXIN/INDOLE-3-ACETIC ACID REPRESSORs(Aux/IAAs)的重要性。然而,辅助素和其他 PGRs 之间复杂的相互作用仍然是 AR 发育中最神秘的方面。本综述重点介绍了辅助素和其他 PGRs 在 AR 萌发和发育过程中的多方面作用,包括生物合成、极性辅助素运输以及转录、蛋白质组和代谢组水平的调控。
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引用次数: 0
Collaboration of hairy root culture and scale-up strategies for enhancing the biosynthesis of medicinal and defensive alkaloids in Papaver sp. 合作开展毛根培养并制定规模化战略,以提高罂粟中药用生物碱和防御性生物碱的生物合成能力
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-09-06 DOI: 10.1016/j.cpb.2024.100381
Zahra Aghaali , Mohammad Reza Naghavi , Meisam Zargar

The Papaver genus is famous for its ability to biosynthesize a wide variety of secondary metabolites, including benzylisoquinoline alkaloids (BIAs) which have been prescribed to treat several health issues, ranging from cough to cancer. Plus, they have been evidenced to be powerful antioxidants scavenging free radical that are synthesized and accumulated when plants are striving to relieve biotic and abiotic stresses. Morphine, codeine, thebaine, noscapine, papaverine, and sanguinarine are the most well-known BIAs. The biosynthesis of BIAs is limited to organized tissues, and because the content of BIAs in these tissues is relatively low, the use of differentiated organ culture, hairy root culture, is drown much more attention. Interestingly, the biosynthetic capacity of the hairy root culture is higher than that of native plants, making them an appropriate platform for in vitro BIA production. One of the most attractive options for improving BIAs accumulation in hairy roots for both modest and massive production is to adopt biotechnological strategies. Regarding the latter, however, the bioreactor-based production of plant bioactive compounds is preceded by optimization of some factors related to machinery and culture medium. The purpose of this review is to supply comprehensive information about current and innovative biotechnological approaches which have been employed or have the potential to be applied for elevating BIA production in the Papaver hairy root culture as well as their importance from the medicinal and defensive perspectives.

罂粟属植物因能够生物合成多种次级代谢产物而闻名,其中包括苄基异喹啉生物碱(BIAs),这种生物碱已被用于治疗从咳嗽到癌症等多种健康问题。此外,它们还被证明是强大的抗氧化剂,能清除植物在努力缓解生物和非生物压力时合成和积累的自由基。吗啡(Morphine)、可待因(codeine)、蒂巴因(thebaine)、莨菪碱(noscapine)、胡椒碱(papaverine)和番荔枝碱(sanguinarine)是最著名的 BIAs。BIAs 的生物合成仅限于有组织的组织,由于这些组织中 BIAs 的含量相对较低,利用分化器官培养(毛根培养)受到更多关注。有趣的是,毛根培养物的生物合成能力高于原生植物,使其成为体外生产 BIA 的合适平台。要提高毛状根中 BIAs 的积累,实现适度和大规模生产,最有吸引力的选择之一是采用生物技术策略。然而,就后者而言,在基于生物反应器生产植物生物活性化合物之前,需要对与机械和培养基相关的一些因素进行优化。本综述的目的是提供有关当前和创新生物技术方法的全面信息,这些方法已被用于或有可能被用于提高巴布亚新几内亚毛根培养物中生物活性化合物的产量,以及从药用和防御角度来看这些方法的重要性。
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引用次数: 0
Developmental regulators in promoting genetic transformation efficiency in maize and other plants 促进玉米和其他植物遗传转化效率的发育调节因子
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-08-30 DOI: 10.1016/j.cpb.2024.100383
Yilin Jiang , Xun Wei , Meirui Zhu , Xiaoyan Zhang , Qingping Jiang , ZiXiao Wang , Yanyong Cao , Xueli An , Xiangyuan Wan

Given global agricultural challenges such as population growth, climate change, and limitations on resources and the environment, as well as increasing diversity in breeding goals, relying on traditional breeding methods is inadequate to provide food security requirements and promote sustainable development. Genetic transformation technology has become an effective tool for performing functional genomics research and molecular breeding. In this study, we conducted an in-depth analysis of 1669 literary works to investigate the potential of developmental regulators (DRs) in enhancing the efficiency of plant genetic transformation, with a concentration on their use in maize. Through multi-omics data analysis, we identified 12 homologous DRs from various species that are potentially applicable to maize. We identified a total of 41 possible disease resistances (DRs) for maize genetic transformation. Further experimental verification of ZmWIND1, a novel regulator belonging to the ERF/AP2 transcription factor (TF) family, showed that it significantly improved the efficiency of plant regeneration and transformation efficiency in maize. Specifically, compared to the control group, the callus induction rates for the pG3GB411-ZmWIND1 vector increased to 60.22 % and 47.85 % in Xiang249 and Zheng58, respectively. Transformation efficiency increased to 37.5 % in Xiang249 and 16.56 % in Zheng58, both significantly surpassing the control group. These findings have the potential to broaden the range of transformable maize varieties and lines, as well as introduce new genetic transformation methods in agricultural biotechnology, underscoring the immense potential to enhance genetic transformation efficiency through systematic exploration and application of DRs in maize.

鉴于人口增长、气候变化、资源和环境限制等全球农业挑战,以及育种目标的日益多样化,依靠传统的育种方法已不足以满足粮食安全需求和促进可持续发展。遗传转化技术已成为进行功能基因组学研究和分子育种的有效工具。在本研究中,我们对 1669 篇文学作品进行了深入分析,以研究发育调节剂(DRs)在提高植物遗传转化效率方面的潜力,并重点关注其在玉米中的应用。通过多组学数据分析,我们从不同物种中发现了 12 种可能适用于玉米的同源 DRs。我们共发现了 41 种可能用于玉米基因转化的抗病性(DRs)。ZmWIND1是一种属于ERF/AP2转录因子(TF)家族的新型调控因子,进一步的实验验证表明,它能显著提高玉米的植株再生效率和转化效率。具体而言,与对照组相比,pG3GB411-ZmWIND1载体在湘249和郑58中的胼胝体诱导率分别提高到60.22%和47.85%。向249和郑58的转化效率分别提高到37.5%和16.56%,均显著超过对照组。这些发现有望扩大可转化玉米品种和品系的范围,并为农业生物技术引入新的遗传转化方法,凸显了通过系统探索和应用 DRs 提高玉米遗传转化效率的巨大潜力。
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引用次数: 0
Exploration of machine learning approaches for automated crop disease detection 探索自动检测作物病害的机器学习方法
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-08-24 DOI: 10.1016/j.cpb.2024.100382
Annu Singla , Ashima Nehra , Kamaldeep Joshi , Ajit Kumar , Narendra Tuteja , Rajeev K. Varshney , Sarvajeet Singh Gill , Ritu Gill

In the era of frequently changing climatic conditions along with ever increasing world population, it becomes imperative to ensure food security. The burden of biotic stresses pose serious threat to crop productivity, therefore, early and accurate detection of plant diseases is essential. Conventional methods exclusively rely on human expertise, and are often labor-intensive, time-consuming, and prone to errors. Recent advancements in machine learning (ML) offer promising alternatives by automating the disease detection processes with high precision and efficiency. We comprehensively analyze various ML techniques, including Convolutional Neural Networks (CNNs), Recurrent Neural Networks (RNNs), Support Vector Machines (SVMs), Random Forest (RF), and Deep Learning Architectures like ResNet and Inception, among others, highlighting their methodologies, datasets, performance metrics, and real-world applications. This systematic review provides a comprehensive analysis after text mining the most recent literature resources of the last half a decade. The review discusses the proposed models, techniques, accuracy, feature selection, extraction methods, the types of datasets used to perform experiments, and the sources of the datasets. Additionally, this review provides critical analyses of existing models in the context of their limitations and gaps. Our findings suggest that while ML based methods demonstrate substantial potential for enhancing agricultural disease management, there is a urgent need for more robust, scalable, and adaptable solutions to address diverse agricultural conditions and disease complexities. By systematically analyzing the extracted data, this review aspires to provide a valuable resource for researchers and practitioners aiming to develop and implement ML-based systems for crop disease detection, thereby contributing to sustainable agriculture and enhancing food security.

在气候条件频繁变化、世界人口不断增加的时代,确保粮食安全已成为当务之急。生物胁迫对作物产量构成严重威胁,因此必须及早准确地检测植物病害。传统方法完全依赖于人类的专业知识,往往需要大量人力、耗费大量时间,而且容易出错。机器学习(ML)的最新进展为我们提供了前景广阔的替代方法,可实现高精度、高效率的病害自动检测过程。我们全面分析了各种 ML 技术,包括卷积神经网络 (CNN)、循环神经网络 (RNN)、支持向量机 (SVM)、随机森林 (RF) 以及 ResNet 和 Inception 等深度学习架构,重点介绍了它们的方法、数据集、性能指标和实际应用。本系统综述在对过去五年的最新文献资源进行文本挖掘后,进行了全面分析。综述讨论了提出的模型、技术、准确性、特征选择、提取方法、用于执行实验的数据集类型以及数据集的来源。此外,本综述还根据现有模型的局限性和差距对其进行了批判性分析。我们的研究结果表明,虽然基于 ML 的方法在加强农业病害管理方面展现出巨大潜力,但仍迫切需要更强大、可扩展和适应性更强的解决方案,以应对不同的农业条件和病害复杂性。通过系统分析提取的数据,本综述希望为旨在开发和实施基于 ML 的作物疾病检测系统的研究人员和从业人员提供宝贵的资源,从而为可持续农业和加强粮食安全做出贡献。
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引用次数: 0
Deciphering the role of SlWRKY36 and SlWRKY51 in salt stress tolerance via modulating ion homeostasis and proline biosynthesis 解密 SlWRKY36 和 SlWRKY51 通过调节离子平衡和脯氨酸生物合成在耐盐胁迫中的作用
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-08-22 DOI: 10.1016/j.cpb.2024.100380
Iqra Mehboob , Sofia Baig , Maria Siddique , Xiaoliang Shan , Ayesha Baig , Mohammad Maroof Shah , Irum Shahzadi , Hongwei Zhao , Shamyla Nawazish , Samina Khalid

Soil salinity caused by NaCl is a major challenge to agricultural crops worldwide. For this, two WRKY transcription factors were evaluated for their role in salt stress tolerance in tomato plants (Solanum lycopersicum; Sl). SlWRKY36 and SlWRKY51 provided novel insight into the regulatory mechanism in tomato against salt stress via virus-induced gene silencing (VIGS). Salt stress significantly reduced chlorophyll-a, an abundant form of chlorophyll content to 6.0 and 5.1 mg/g and proline content to 0.06 mg/g and 0.09 mg/g respectively in SlWRKY36 and SlWRKY51 silenced tomato plants. This shows that salt stress affected proline content that act as osmo-protectant and damaged photosynthetic pigments in silenced SlWRKY36 and SlWRKY51 tomato plants. Similarly, the concentrations of Na+/ K+ ratio also showed a significantly higher trend 14 days after salt stress with 5.5 mg/g and 8.9 mg/g concentration at 200 mM for SlWRKY36 and SlWRKY51 showing silencing promotes Na+/K+ ion ratio under salt stress. Also, salt stress responsive genes such as salt overly sensitive SOS1 and Na+/H+ exchanger NHX1 displayed lower transcript level in silenced plants at 200 mM salt stress showing their negative regulation by SlWRKY36 and SlWRKY51 gene silencing. Collectively, these findings suggest for the first time the role of SlWRKY36 and SlWRKY51 as positive regulators of salt stress tolerance by managing ion homeostasis, proline content and photosynthetic machinery via transcriptional reprogramming. Overall, SlWRKY36 and SlWRKY51 were explored as potential candidates for engineering salt tolerance in tomato crop plants.

由 NaCl 引起的土壤盐碱化是全球农作物面临的一大挑战。为此,研究人员评估了两个 WRKY 转录因子在番茄植物(Solanum lycopersicum; Sl)耐盐胁迫中的作用。SlWRKY36和SlWRKY51通过病毒诱导的基因沉默(VIGS)对番茄抗盐胁迫的调控机制提供了新的见解。在 SlWRKY36 和 SlWRKY51 沉默的番茄植株中,盐胁迫使叶绿素-a(叶绿素的一种丰富形式)含量分别明显降低到 6.0 和 5.1 毫克/克,脯氨酸含量分别降低到 0.06 毫克/克和 0.09 毫克/克。这表明盐胁迫影响了沉默的 SlWRKY36 和 SlWRKY51 番茄植株中作为渗透保护剂的脯氨酸含量,并破坏了光合色素。同样,盐胁迫 14 天后,SlWRKY36 和 SlWRKY51 的 Na+/K+ 比率浓度也呈显著升高趋势,在 200 毫摩尔浓度下分别为 5.5 毫克/克和 8.9 毫克/克,这表明沉默会促进盐胁迫下 Na+/K+ 离子比率的升高。此外,在 200 毫摩尔盐胁迫条件下,沉默植株中的盐胁迫响应基因(如对盐过度敏感的 SOS1 和 Na+/H+ 交换子 NHX1)的转录水平较低,这表明它们受 SlWRKY36 和 SlWRKY51 基因沉默的负调控。总之,这些发现首次表明 SlWRKY36 和 SlWRKY51 通过转录重编程管理离子平衡、脯氨酸含量和光合作用机制,从而对盐胁迫耐受性起到正向调控作用。总之,SlWRKY36 和 SlWRKY51 是番茄作物耐盐工程的潜在候选者。
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引用次数: 0
Physiological characteristics and transcriptomic analysis of response patterns of Gynura divaricata (L.) DC. cultured in vitro under NaCl stress NaCl 胁迫下离体培养的 Gynura divaricata (L.) DC. 的生理特征和反应模式转录组分析
IF 5.4 Q1 PLANT SCIENCES Pub Date : 2024-08-11 DOI: 10.1016/j.cpb.2024.100379
Yujie Zeng , Yuping Xiong , Junyu Liu , Xiaohong Chen , Jianrong Li , Shuguang Jian , Hai Ren , Xinhua Zhang , Yuan Li , Zhan Bian , Kunlin Wu , Songjun Zeng , Jaime A. Teixeira da Silva , Guohua Ma

Soil salinity, a major environmental stress, restricts agricultural production worldwide. Gynura divaricata (L.) DC. is widely cultivated on tropical islands in China and has both edible and medicinal value. NaCl stress and growth indicators, antioxidant enzyme activity, as well as MDA, proline, and soluble sugar content, were determined. Based on the transcriptomic data of tissue-cultured G. divaricata plantlets grown in control (0 mM NaCl) and salt stress (50 and 200 mM NaCl) conditions, gene expression patterns were examined. KEGG enrichment analysis of differentially expressed genes indicated significant enrichment of plant hormone signaling, MAPK signaling, and starch and sucrose metabolism pathways. These findings allowed key biological pathways and salt stress-responsive genes to be identified, thus providing a molecular basis for breeding salt-tolerant G. divaricata varieties. This transcriptomic analysis revealed a complex tolerance mechanism of G. divaricata in response to NaCl, laying a foundation for screening and cloning key genes related to NaCl tolerance and studying their interactions. These findings would allow the molecular basis of NaCl tolerance to be explored, with the aim of breeding NaCl-tolerant varieties.

土壤盐碱化是一种主要的环境压力,制约着全世界的农业生产。Gynura divaricata (L.) DC. 在中国热带岛屿上广泛种植,具有食用和药用价值。研究测定了NaCl胁迫和生长指标、抗氧化酶活性以及MDA、脯氨酸和可溶性糖含量。根据在对照(0 mM NaCl)和盐胁迫(50 mM NaCl 和 200 mM NaCl)条件下生长的组织培养小株 G. divaricata 的转录组数据,研究了基因表达模式。对差异表达基因的 KEGG 富集分析表明,植物激素信号转导、MAPK 信号转导以及淀粉和蔗糖代谢途径的基因表达明显增加。这些发现确定了关键生物通路和盐胁迫响应基因,从而为培育耐盐 G. divaricata 品种提供了分子基础。该转录组分析揭示了 G. divaricata 对 NaCl 的复杂耐受机制,为筛选和克隆与耐 NaCl 相关的关键基因并研究它们之间的相互作用奠定了基础。这些发现将有助于探索耐NaCl的分子基础,从而培育出耐NaCl的品种。
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引用次数: 0
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Current Plant Biology
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