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[Prediction of suitable habitats of Phlebotomus chinensis in Gansu Province based on the Biomod2 ensemble model]. 基于Biomod2集合模型的中国白蛉适宜生境预测[j]。
Q3 Medicine Pub Date : 2025-06-06 DOI: 10.16250/j.32.1915.2024223
D Yu, Y Hou, A He, Y Feng, G Yang, C Yang, H Liang, H Zhang, F Li

Objective: To investigate the suitable habitats of Phlebotomus chinensis in Gansu Province, so as provide insights into effective management of mountain-type zoonotic visceral leishmaniasis (MT-ZVL).

Methods: The geographical coordinates of locations where MT-ZVL cases were reported were retrieved in Gansu Province from 2015 to 2023, and data pertaining to 26 environmental variables were captured, including 19 climatic variables (annual mean temperature, mean diurnal range, isothermality, temperature seasonality, maximum temperature of the warmest month, minimum temperature of the coldest month, temperature annual range, mean temperature of the wettest quarter, mean temperature of the driest quarter, mean temperature of the warmest quarter, mean temperature of the coldest quarter, annual precipitation, precipitation of the wettest month, precipitation of the driest month, precipitation seasonality, precipitation of the wettest quarter, precipitation of the driest quarter, precipitation of the warmest quarter, and precipitation of the coldest quarter), five geographical variables (elevation, annual normalized difference vegetation index, vegetation type, landform type and land use type), and two population and economic variables (population distribution and gross domestic product). Twelve species distribution models were built using the biomod2 package in R project, including surface range envelope (SRE) model, generalized linear model (GLM), generalized additive model (GAM), multivariate adaptive regression splines (MARS) model, generalized boosted model (GBM), classification tree analysis (CTA) model, flexible discriminant analysis (FDA) model, maximum entropy (MaxEnt) model, optimized maximum entropy (MAXNET) model, artificial neural network (ANN) model, random forest (RF) model, and extreme gradient boosting (XGBOOST) model. The performance of 12 models was evaluated using the area under the receiver operating characteristic curve (AUC), true skill statistics (TSS), and Kappa coefficient, and single models with high performance was selected to build the optimal ensemble models. Factors affecting the survival of Ph. chinensis were identified based on climatic, geographical, population and economic variables. In addition, the suitable distribution areas of Ph. chinensis were predicted in Gansu Province under shared socioeconomic pathway 126 (SSP126), SSP370 and SSP585 scenarios based on climatic data during the period from 1991 to 2020, from 2041 to 2060 (2050s), and from 2081 to 2100 (2090s) .

Results: A total of 11 species distribution models were successfully built for prediction of potential distribution areas of Ph. chinensis in Gansu Province, and the RF model had the highest predictive accuracy (AUC = 0.998). The ensemble model built based on the RF model, XGBOOST model, GLM, and MARS model had an increased predictive accuracy (AUC = 0.999

目的:探讨甘肃省中国白蛉的适宜生境,为山区型人畜共患内脏利什曼病(MT-ZVL)的有效防治提供依据。方法:利用2015 - 2023年甘肃省MT-ZVL病例报告地点地理坐标,获取26个环境变量数据,包括19个气候变量(年平均气温、平均日差、等温线、温度季节性、最暖月最高气温、最冷月最低气温、年温差、最湿季平均气温、最湿季平均气温、最湿季平均气温、最湿季平均气温、最湿季平均气温、最湿季平均气温、最湿季平均气温、最湿季平均气温、最湿季平均气温、最湿季平均气温和最湿季平均气温)。最干季平均气温、最暖季平均气温、最冷季平均气温、年降水量、最湿月降水量、最干月降水量、降水季节性、最湿季降水量、最干季降水量、最暖季降水量、最冷季降水量)、5个地理变量(海拔、年归一化植被指数、植被类型、地貌类型和土地利用类型),以及两个人口和经济变量(人口分布和国内生产总值)。利用R项目中的biomod2软件包建立了12个物种分布模型,包括表面范围包络(SRE)模型、广义线性模型(GLM)、广义加性模型(GAM)、多变量自适应回归样条(MARS)模型、广义提升模型(GBM)、分类树分析(CTA)模型、柔性判别分析(FDA)模型、最大熵(MaxEnt)模型、优化最大熵(MAXNET)模型、人工神经网络(ANN)模型、生物多样性模型、生物多样性模型、生物多样性模型、生物多样性模型、生物多样性模型、生物多样性模型、生物多样性模型。随机森林(RF)模型和极端梯度增强(XGBOOST)模型。采用受者工作特征曲线下面积(AUC)、真技能统计量(TSS)和Kappa系数对12个模型的性能进行评价,选择性能较高的单个模型构建最优集成模型。从气候、地理、人口和经济等方面分析了影响中华棉铃虫生存的因素。此外,基于1991 - 2020年、2041 - 2060年和2081 - 2100年的气候数据,在共享社会经济路径126 (SSP126)、SSP370和SSP585情景下,预测了甘肃省柽柽树的适宜分布区。共建立了11个物种分布模型用于预测甘肃省中华按蚊潜在分布区域,其中RF模型预测精度最高(AUC = 0.998)。基于RF模型、XGBOOST模型、GLM和MARS模型构建的集成模型的预测精度(AUC = 0.999)高于单一模型。26个环境因子中,最湿季降水(12.00%)、最暖月最高气温(11.58%)和年归一化植被指数(11.29%)对柽柳适宜生境分布的贡献最大。在1991 - 2020年气候条件下,甘肃省柽柽树潜在适宜生境面积约为5.80 × 104 km2,其中高度适宜生境面积为1.42 × 104 km2,主要集中在甘肃省最南部地区。到2050年代,甘肃省不适宜和低适宜区较1991 ~ 2020年有不同程度的减少,而中等和高度适宜区则呈现扩张和迁移的趋势。到20世纪90年代,在SSP126情景下,中国剑齿虎适宜生境面积显著增加,在SSP585情景下,高度适宜生境向极适宜生境转变,也出现了大幅增长。未来全球变暖有利于中华Ph. chinensis的生存和繁殖。20世纪50年代至90年代,甘肃省柽柳高适区将向北扩展。在SSP126情景下,2050年代和204.79%的适宜生境面积将比1991 ~ 2020年分别增加194.75%和204.79%。在SSP370情景下,中等和高度适宜地区预计在2050年代和209.03%分别增加164.40%和209.03%,而在SSP585情景下,预计分别增加195.98%和211.66%。结论:随着气候的变化,中华棉铃虫潜在适宜生境的分布逐渐发生变化。建议在甘肃省中东部地区加强对中华按蚊的监测和管理,以支持MT-ZVL的早期预警。
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引用次数: 0
[The modern Silk Road spirit leads the "Belt and Road" Initiative to facilitate global tropical disease control programmes]. [现代丝绸之路精神引领“一带一路”倡议促进全球热带病控制规划]。
Q3 Medicine Pub Date : 2025-06-05 DOI: 10.16250/j.32.1915.2024274
L Zhou, X Li, Z Chen

The modern Silk Road spirit advocating for win-win cooperative partnerships, aligns with the target of the "Belt and Road" Initiative, which provides new opportunities for collaboration on tropical disease control among countries along the "Belt and Road". The modern Silk Road spirit may effectively facilitate tropical disease control programmes and improve disease control concepts and approaches through collaborative research, information sharing, infrastructure development, and joint efforts in pharmaceuticals and vaccine development; however, there are still multiple challenges that require to be overcome, including political and cultural differences, and data sharing. Therefore, countries participating in the "Belt and Road" Initiative need to work together with mutual respects, build effective collaborative mechanisms and improve communications to jointly facilitate the sustainable development of global tropical disease control programmes and cultural exchange, so as to contribute to global health and prosperities. This article discusses the contribution of the modern Silk Road spirit to facilitating global tropical disease control programmes in the context of the "Belt and Road" Initiative.

倡导合作共赢的现代丝绸之路精神,与“一带一路”倡议的目标一脉相合,为沿线国家开展热带病防控合作提供了新的机遇。现代丝绸之路精神可以通过合作研究、信息共享、基础设施建设、药物和疫苗研发等方式,有效促进热带病控制规划,改进疾病控制理念和方法;然而,仍有许多挑战需要克服,包括政治和文化差异以及数据共享。因此,参与“一带一路”建设的各国应相互尊重,建立有效的合作机制,加强沟通,共同促进全球热带病防治事业的可持续发展和文化交流,为全球健康与繁荣作出贡献。本文讨论了在“一带一路”倡议背景下,现代丝绸之路精神对促进全球热带病控制规划的贡献。
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引用次数: 0
[Impact of the number of microsatellite markers on the analysis of population genetic diversity of Schistosoma japonicum]. [微卫星标记数量对日本血吸虫群体遗传多样性分析的影响]。
Q3 Medicine Pub Date : 2025-06-05 DOI: 10.16250/j.32.1915.2025005
J Long, L Ma, H Zong, Z Zhou, H Yan, Q Zhao

Objective: To examine the impact of different numbers of microsatellite markers on the analysis of population genetic diversity of Schistosoma japonicum, so as to provide insights into studies on the population genetic diversity of S. japonicum.

Methods: Oncomelania hupensis snails were collected from a wasteland in Gong'an County, Hubei Province, and 37 S. japonicum-infected O. hupensis snails were identified using the cercarial shedding method. A single cercaria released from each S. japonicum-infected O. hupensis snail was collected, and 10 cercariae were randomly collected from DNA extraction. Nine previously validated microsatellite loci and 15 additional microsatellite loci screened from literature review and the GenBank database and confirmed with stable amplification efficiency were selected as molecular markers. Genomic DNA from cercariae was subjected to three multiplex PCR amplifications of microsatellite markers with the Type-it Microsatellite PCR kit, and genotyped using capillary electrophoresis. The population genetic diversity of S. japonicum cercariae DNA was analyzed with observed number of alleles (Na), effective number of alleles (Ae), observed heterozygosity (Ho), expected heterozygosity (He), and polymorphism information content (PIC), and tested for Hardy-Weinberg equilibrium (HWE) and linkage disequilibrium (LD). To further investigate the impact of the number of microsatellite loci on the population genetic diversity of S. japonicum, the number of microsatellite markers was sequentially assigned from 1 to 24, and the mean and standard deviation of Na were calculated for S. japonicum populations at different locus numbers. In addition, the coefficient of variation (CV) of allelic number (defined as the ratio of the standard deviation to the mean) was determined, and the variation in Na with increasing microsatellite locus numbers was analyzed.

Results: Genomic DNA from 345 S. japonicum cercariae was selected for genotyping of 24 microsatellite markers, and all 24 microsatellite loci met linkage equilibrium (standardized linkage disequilibrium coefficient D' < 0.7, r2 < 0.3) and deviated from Hardy-Weinberg equilibrium (P < 0.001). The mean Na, Ae, Ho and He were 27.46 ± 2.18, 12.46 ± 0.95, 0.46 ± 0.03, and 0.91 ± 0.01 for 24 microsatellite loci in S. japonicum cercarial populations, respectively, and PIC ranged from 0.85 to 0.96, indicating high genome-wide representativeness of 24 microsatellite loci. The mean value of Na-Ae was higher in genotyping with 9 previously validated microsatellite loci (19.88 ± 8.43) than with all 24 loci (14.99 ± 8.09). As the number of microsatellite loci increased, the mean Na showed no significant variation; however

目的:研究不同数量的微卫星标记对日本血吸虫群体遗传多样性分析的影响,为日本血吸虫群体遗传多样性研究提供参考。方法:采集湖北省巩安县某荒地的钉螺,用尾蚴脱落法鉴定感染日本血吸虫的钉螺37只。每只感染血吸虫的钉螺释放1条尾蚴,DNA提取随机抽取10条尾蚴。选择9个先前验证的微卫星位点和从文献综述和GenBank数据库中筛选并确认具有稳定扩增效率的15个额外的微卫星位点作为分子标记。用Type-it微卫星PCR试剂盒对尾蚴基因组DNA进行三次微卫星标记多重PCR扩增,并用毛细管电泳进行基因分型。采用观察等位基因数(Na)、有效等位基因数(Ae)、观察杂合度(Ho)、期望杂合度(He)和多态性信息含量(PIC)分析日本血吸虫尾蚴DNA群体遗传多样性,并进行Hardy-Weinberg平衡(HWE)和连锁不平衡(LD)检验。为了进一步研究微卫星位点数目对日本稻居群遗传多样性的影响,将微卫星标记数目按顺序从1个分配到24个,计算不同位点数目下日本稻居群Na的均值和标准差。测定等位基因数变异系数(CV)(定义为标准差与均值之比),分析Na随微卫星基因座数增加的变化规律。结果:选取345份日本血吸虫尾蚴基因组DNA,对24个微卫星标记进行基因分型,24个微卫星位点均满足连锁平衡(标准化连锁不平衡系数D′< 0.7,r2 < 0.3),偏离Hardy-Weinberg平衡(P < 0.001)。24个微卫星位点的Na、Ae、Ho和He的均值分别为27.46±2.18、12.46±0.95、0.46±0.03和0.91±0.01,PIC在0.85 ~ 0.96之间,表明24个微卫星位点具有较高的全基因组代表性。9个微卫星基因座的Na-Ae基因分型平均值(19.88±8.43)高于全部24个基因座的平均值(14.99±8.09)。随着微卫星基因座数量的增加,Na均值变化不显著;但标准差逐渐减小。值得注意的是,当基因座数达到18或更多时,Na的标准差变异显著减小。此外,18个位点Na的标准差小于24个位点Na平均值的5%,CV为4.6%。结论:微卫星位点数量对日本血吸虫群体遗传多样性分析有显著影响。在目前日本血吸虫低流行率和遗传分布不平衡的情况下,推荐18个以上的微卫星位点用于日本血吸虫群体遗传多样性分析。
{"title":"[Impact of the number of microsatellite markers on the analysis of population genetic diversity of <i>Schistosoma japonicum</i>].","authors":"J Long, L Ma, H Zong, Z Zhou, H Yan, Q Zhao","doi":"10.16250/j.32.1915.2025005","DOIUrl":"https://doi.org/10.16250/j.32.1915.2025005","url":null,"abstract":"<p><strong>Objective: </strong>To examine the impact of different numbers of microsatellite markers on the analysis of population genetic diversity of <i>Schistosoma japonicum</i>, so as to provide insights into studies on the population genetic diversity of <i>S. japonicum</i>.</p><p><strong>Methods: </strong><i>Oncomelania hupensis</i> snails were collected from a wasteland in Gong'an County, Hubei Province, and 37 <i>S. japonicum</i>-infected <i>O. hupensis</i> snails were identified using the cercarial shedding method. A single cercaria released from each <i>S. japonicum</i>-infected <i>O. hupensis</i> snail was collected, and 10 cercariae were randomly collected from DNA extraction. Nine previously validated microsatellite loci and 15 additional microsatellite loci screened from literature review and the GenBank database and confirmed with stable amplification efficiency were selected as molecular markers. Genomic DNA from cercariae was subjected to three multiplex PCR amplifications of microsatellite markers with the Type-it Microsatellite PCR kit, and genotyped using capillary electrophoresis. The population genetic diversity of <i>S. japonicum</i> cercariae DNA was analyzed with observed number of alleles (<i>Na</i>), effective number of alleles (<i>Ae</i>), observed heterozygosity (<i>Ho</i>), expected heterozygosity (<i>He</i>), and polymorphism information content (PIC), and tested for Hardy-Weinberg equilibrium (HWE) and linkage disequilibrium (LD). To further investigate the impact of the number of microsatellite loci on the population genetic diversity of <i>S. japonicum</i>, the number of microsatellite markers was sequentially assigned from 1 to 24, and the mean and standard deviation of <i>Na</i> were calculated for <i>S. japonicum</i> populations at different locus numbers. In addition, the coefficient of variation (<i>CV</i>) of allelic number (defined as the ratio of the standard deviation to the mean) was determined, and the variation in <i>Na</i> with increasing microsatellite locus numbers was analyzed.</p><p><strong>Results: </strong>Genomic DNA from 345 <i>S. japonicum</i> cercariae was selected for genotyping of 24 microsatellite markers, and all 24 microsatellite loci met linkage equilibrium (standardized linkage disequilibrium coefficient <i>D</i>' < 0.7, <i>r</i><sup>2</sup> < 0.3) and deviated from Hardy-Weinberg equilibrium (<i>P</i> < 0.001). The mean <i>Na</i>, <i>Ae</i>, <i>Ho</i> and <i>He</i> were 27.46 ± 2.18, 12.46 ± 0.95, 0.46 ± 0.03, and 0.91 ± 0.01 for 24 microsatellite loci in <i>S. japonicum</i> cercarial populations, respectively, and PIC ranged from 0.85 to 0.96, indicating high genome-wide representativeness of 24 microsatellite loci. The mean value of <i>Na</i>-<i>Ae</i> was higher in genotyping with 9 previously validated microsatellite loci (19.88 ± 8.43) than with all 24 loci (14.99 ± 8.09). As the number of microsatellite loci increased, the mean <i>Na</i> showed no significant variation; however","PeriodicalId":38874,"journal":{"name":"中国血吸虫病防治杂志","volume":"37 3","pages":"239-246"},"PeriodicalIF":0.0,"publicationDate":"2025-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144745378","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Generation of a dense granule protein 3 gene-deficient strain of Toxoplasma gondii and its virulence testing]. 刚地弓形虫致密颗粒蛋白3基因缺陷株的产生及其毒力检测。
Q3 Medicine Pub Date : 2025-06-04 DOI: 10.16250/j.32.1915.2024293
P Wang, M Wu, J Du
<p><strong>Objective: </strong>To generate a dense granule protein 3 (<i>GRA3</i>) gene-deficient mutant of the <i>Toxoplasma gondii</i> ME49 strain and to test the virulence of the mutant.</p><p><strong>Methods: </strong>Gene-deficient parasites were generated with the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (CRISPR/Cas9) system. Guide RNA (gRNA) was designed using the E-CRISPR software, and mutated on the pSAG1::Cas9-U6::sgUPRT plasmid using the Q5 site-directed mutagenesis kit to generate the pSAG1::Cas9-U6::sgGRA3 plasmid. A <i>GRA3</i> donor plasmid containing <i>GRA3</i> gene upstream sequences, pyrimethamine resistant gene dihydrofolate reductase-thymidylate synthase (<i>DHFR-TS</i>) and <i>GRA3</i> gene downstream sequence was generated, and <i>GRA3</i> donor DNA was amplified using PCR assay. The pSAG1::Cas9-U6::sgGRA3 plasmid and <i>GRA3</i> donor DNA were electroporated into tachyzoites of the wild-type <i>T. gondii</i> ME49 strain. Then, parasite suspensions were inoculated into human foreskin fibroblast (HFF) cells and screened with pyrimethamine to yield pyrimethamine-resistant parasites for monoclonal screening. The <i>GRA3</i> gene deficient monoclonal strain (ME49Δ<i>gra3</i>) of <i>T. gondii</i> was identified using PCR and Western blotting assays, and the expression of GRA3 protein was determined in the <i>T. gondii</i> ME49Δ<i>gra3</i> strain using Western blotting. Subsequently, 1 000 freshly lysed tachyzoites of <i>T. gondii</i> ME49 and ME49Δ<i>gra3</i> strains were transferred to 12-well plates seeded with HFF cells, and incubated at 37 °C containing 5% CO<sub>2</sub> for 7 days, and the number of plaques was counted by staining with crystal violet solutions. HFF cells infected with tachyzoites of <i>T. gondii</i> ME49 and ME49Δ<i>gra3</i> strains were stained using Giemsa solutions, and the numbers of cells containing 1, 2, 4, and > 4 <i>T. gondii</i> parasitophorous vacuoles were counted. In addition, the survival rates of C57BL/6 mice infected with <i>T. gondii</i> ME49 and ME49Δ<i>gra3</i> strains were compared 35 days post-infection.</p><p><strong>Results: </strong>PCR assay revealed successful amplification of both the upstream and downstream homologous arm bands of the <i>DHFR-TS</i> gene in the <i>T. gondii</i> ME49Δ<i>gra3</i> strain, and no corresponding bands were amplified in the ME49 strain. The <i>GRA3</i> band was amplified in the ME49 strain, and the <i>DHFR-TS</i> band, rather than <i>GRA3</i> band, was amplified in the ME49Δ<i>gra3</i> strain. Western blotting determined absence of GRA3 protein expression in the ME49Δ<i>gra3</i> strain. Crystal violet staining showed that the <i>T. gondii</i> ME49 strain produced more plaques than the ME49Δ<i>gra3</i> strain [(352.67 ± 26.39) plaques vs. (235.00 ± 26.29) plaques; <i>t</i> = 5.472, <i>P</i> < 0.01], and Giemsa staining revealed that the proportion of <i>T. gondii</i> parasitophorous vacuoles containing
目的:制备刚地弓形虫ME49株致密颗粒蛋白3 (GRA3)基因缺陷突变体并检测其毒力。方法:采用聚类规则间隔短回文重复序列(CRISPR)/CRISPR相关蛋白9 (CRISPR/Cas9)系统生成基因缺陷寄生虫。利用E-CRISPR软件设计gRNA,利用Q5位点定向突变试剂盒在pSAG1::Cas9-U6::sgUPRT质粒上突变,生成pSAG1::Cas9-U6::sgGRA3质粒。构建GRA3供体质粒,包含GRA3基因上游序列、抗乙胺嘧啶基因二氢叶酸还原酶胸腺苷酸合成酶(DHFR-TS)和GRA3基因下游序列,并采用PCR扩增GRA3供体DNA。将pSAG1::Cas9-U6::sgGRA3质粒和GRA3供体DNA电穿孔到野生型刚地弓形虫ME49的速殖子中。然后,将寄生虫悬液接种于人包皮成纤维细胞(HFF),用乙胺嘧啶筛选,得到耐乙胺嘧啶寄生虫进行单克隆筛选。采用PCR和Western blotting方法鉴定了刚地弓形虫gr3基因缺陷单克隆株(ME49Δgra3),并采用Western blotting方法检测了gr3蛋白在刚地弓形虫ME49Δgra3株中的表达。随后,将刚地弓形虫ME49和ME49Δgra3菌株1 000个新鲜裂解的速殖子转移到含有HFF细胞的12孔板上,在37℃含5% CO2条件下孵育7天,用结晶紫溶液染色计数菌斑数量。用吉氏染色液对感染弓形虫ME49和ME49Δgra3菌株速殖子的HFF细胞进行染色,计数含有1、2、4和bbb40个弓形虫寄生液泡的细胞数量。此外,比较感染弓形虫ME49和ME49Δgra3菌株后35 d C57BL/6小鼠的存活率。结果:PCR检测结果显示,弓形虫ME49Δgra3株中成功扩增到DHFR-TS基因上下游同源臂带,而ME49株中未扩增到相应的条带。ME49菌株扩增GRA3条带,ME49Δgra3菌株扩增DHFR-TS条带,而不是GRA3条带。Western blotting检测ME49Δgra3菌株中GRA3蛋白表达缺失。结晶紫染色显示,刚地弓形虫ME49菌株比ME49Δgra3菌株产生更多的斑块[(352.67±26.39)个斑块vs(235.00±26.29)个斑块];t = 5.472, P < 0.01], Giemsa染色结果显示,ME49菌株感染的HFF细胞中含有至少4个刚地弓形虫速殖子的弓形虫寄生液泡比例高于ME49Δgra3菌株感染的HFF细胞[(75.67±2.52)%比(59.67±2.31)%;t = 8.113, P < 0.01],且感染ME49株的HFF细胞中含有至少1或2个弓形虫速殖子的弓形虫寄生液泡比例高于感染ME49Δgra3株的HFF细胞[(24.33±2.52)% vs(40.33±2.31)%];t = -8.113, P < 0.01]。此外,感染弓形虫ME49和ME49Δgra3菌株的小鼠在感染后8和9 d开始死亡,感染弓形虫ME49和ME49Δgra3菌株的小鼠在感染后35 d的死亡率分别为10.00%和70.00% (χ2 = 6.762, P < 0.01)。结论:已成功生成弓形虫ME49Δgra3菌株,GRA3蛋白可增强弓形虫ME49菌株的毒力。
{"title":"[Generation of a dense granule protein 3 gene-deficient strain of <i>Toxoplasma gondii</i> and its virulence testing].","authors":"P Wang, M Wu, J Du","doi":"10.16250/j.32.1915.2024293","DOIUrl":"https://doi.org/10.16250/j.32.1915.2024293","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Objective: &lt;/strong&gt;To generate a dense granule protein 3 (&lt;i&gt;GRA3&lt;/i&gt;) gene-deficient mutant of the &lt;i&gt;Toxoplasma gondii&lt;/i&gt; ME49 strain and to test the virulence of the mutant.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;Gene-deficient parasites were generated with the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (CRISPR/Cas9) system. Guide RNA (gRNA) was designed using the E-CRISPR software, and mutated on the pSAG1::Cas9-U6::sgUPRT plasmid using the Q5 site-directed mutagenesis kit to generate the pSAG1::Cas9-U6::sgGRA3 plasmid. A &lt;i&gt;GRA3&lt;/i&gt; donor plasmid containing &lt;i&gt;GRA3&lt;/i&gt; gene upstream sequences, pyrimethamine resistant gene dihydrofolate reductase-thymidylate synthase (&lt;i&gt;DHFR-TS&lt;/i&gt;) and &lt;i&gt;GRA3&lt;/i&gt; gene downstream sequence was generated, and &lt;i&gt;GRA3&lt;/i&gt; donor DNA was amplified using PCR assay. The pSAG1::Cas9-U6::sgGRA3 plasmid and &lt;i&gt;GRA3&lt;/i&gt; donor DNA were electroporated into tachyzoites of the wild-type &lt;i&gt;T. gondii&lt;/i&gt; ME49 strain. Then, parasite suspensions were inoculated into human foreskin fibroblast (HFF) cells and screened with pyrimethamine to yield pyrimethamine-resistant parasites for monoclonal screening. The &lt;i&gt;GRA3&lt;/i&gt; gene deficient monoclonal strain (ME49Δ&lt;i&gt;gra3&lt;/i&gt;) of &lt;i&gt;T. gondii&lt;/i&gt; was identified using PCR and Western blotting assays, and the expression of GRA3 protein was determined in the &lt;i&gt;T. gondii&lt;/i&gt; ME49Δ&lt;i&gt;gra3&lt;/i&gt; strain using Western blotting. Subsequently, 1 000 freshly lysed tachyzoites of &lt;i&gt;T. gondii&lt;/i&gt; ME49 and ME49Δ&lt;i&gt;gra3&lt;/i&gt; strains were transferred to 12-well plates seeded with HFF cells, and incubated at 37 °C containing 5% CO&lt;sub&gt;2&lt;/sub&gt; for 7 days, and the number of plaques was counted by staining with crystal violet solutions. HFF cells infected with tachyzoites of &lt;i&gt;T. gondii&lt;/i&gt; ME49 and ME49Δ&lt;i&gt;gra3&lt;/i&gt; strains were stained using Giemsa solutions, and the numbers of cells containing 1, 2, 4, and &gt; 4 &lt;i&gt;T. gondii&lt;/i&gt; parasitophorous vacuoles were counted. In addition, the survival rates of C57BL/6 mice infected with &lt;i&gt;T. gondii&lt;/i&gt; ME49 and ME49Δ&lt;i&gt;gra3&lt;/i&gt; strains were compared 35 days post-infection.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;PCR assay revealed successful amplification of both the upstream and downstream homologous arm bands of the &lt;i&gt;DHFR-TS&lt;/i&gt; gene in the &lt;i&gt;T. gondii&lt;/i&gt; ME49Δ&lt;i&gt;gra3&lt;/i&gt; strain, and no corresponding bands were amplified in the ME49 strain. The &lt;i&gt;GRA3&lt;/i&gt; band was amplified in the ME49 strain, and the &lt;i&gt;DHFR-TS&lt;/i&gt; band, rather than &lt;i&gt;GRA3&lt;/i&gt; band, was amplified in the ME49Δ&lt;i&gt;gra3&lt;/i&gt; strain. Western blotting determined absence of GRA3 protein expression in the ME49Δ&lt;i&gt;gra3&lt;/i&gt; strain. Crystal violet staining showed that the &lt;i&gt;T. gondii&lt;/i&gt; ME49 strain produced more plaques than the ME49Δ&lt;i&gt;gra3&lt;/i&gt; strain [(352.67 ± 26.39) plaques vs. (235.00 ± 26.29) plaques; &lt;i&gt;t&lt;/i&gt; = 5.472, &lt;i&gt;P&lt;/i&gt; &lt; 0.01], and Giemsa staining revealed that the proportion of &lt;i&gt;T. gondii&lt;/i&gt; parasitophorous vacuoles containing","PeriodicalId":38874,"journal":{"name":"中国血吸虫病防治杂志","volume":"37 3","pages":"304-309"},"PeriodicalIF":0.0,"publicationDate":"2025-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144745376","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Spatiotemporal distribution of Aedes albopictus and its influencing factors in China from 2000 to 2019]. 2000 - 2019年中国白纹伊蚊时空分布及影响因素分析
Q3 Medicine Pub Date : 2025-05-29 DOI: 10.16250/j.32.1915.2025047
Z Jiao, L Qu, D Wang, Y Zhang, S Lü

Objective: To investigate the spatial distribution of Aedes albopictus in China at different time periods from 2000 to 2019, so as to provide insights into precise management of Ae. albopictus in China.

Methods: Data pertaining to the distribution of Ae. albopictus in China from 2000 to 2019 were collected through literature retrieval with terms of "Aedes albopictus", "monitoring", "survey", "density", "distribution", and "outbreak" in national and international databases. The title and time of the publication, sampling sites, sampling time, mosquito capture methods, and mosquito species and density were extracted, and the longitude and latitude of sampling sites were obtained through Baidu Map. Meteorological element data at meteorological observation stations within China were obtained from the National Climatic Data Center of the United States, and the annual maximum temperature, annual minimum temperature, average temperature in January, average temperature in July, annual temperature range, daily temperature range and relative humidity were calculated and subjected to Kriging interpolation. Monthly cumulative precipitation grid data and monthly average temperature grid data with a resolution of 1 km for China from 2000 to 2019 were obtained from the National Tibetan Plateau Scientific Data Center, and the annual precipitation and annual average temperature were calculated cumulatively. Population density data in China from 2000 to 2019 were obtained from the WorldPop Hub, and the gross domestic product (GDP) in China was obtained from the Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences. The above data were divided into 5-year intervals to calculate data during the periods from 2000 to 2004, from 2005 to 2009, from 2010 to 2014, and from 2015 to 2019. Ae. albopictus distribution data were modeled in China from 2000 to 2019 and during each period with the classification random forest (RF) model, to predict the distribution of Ae. albopictus across the country and analyze the distribution of Ae. albopictus based on the seven major climate zones in China. The performance of RF models was evaluated by accuracy, precision, recall, and area under the receiver operating characteristic curve (AUC), and the importance of each feature in the RF model was evaluated with mean decrease accuracy (MDA).

Results: A total of 1 191 Chinese publictions and 391 English publications were retrieved, among which 580 articles provided detailed data on the sampling sites of Ae. albopictus and specific sampling years, meeting the inclusion criteria. A total of 2 234 Ae. albopictus sampling sites were included in China from 2000 to 2019, and RF modeling results showed that the overall Ae. Albopictus distribution area was mainly found in southeastern and southwestern provinces of China from 2

目的:了解2000 - 2019年中国不同时段白纹伊蚊的空间分布情况,为白纹伊蚊的精准防控提供依据。白纹伊蚊在中国方法:收集有关伊蚊分布的资料。以“白纹伊蚊”、“监测”、“调查”、“密度”、“分布”、“疫情”为检索词,在国内外数据库中检索2000 - 2019年中国白纹伊蚊的相关文献。提取出版物的标题和出版时间、采样地点、采样时间、蚊虫捕获方法、蚊虫种类和密度,并通过百度地图获取采样地点的经纬度。利用美国国家气候数据中心提供的中国境内各气象观测站气象要素资料,计算年最高气温、年最低气温、1月平均气温、7月平均气温、年气温差、日气温差和相对湿度,并进行Kriging插值。利用青藏高原国家科学数据中心2000 - 2019年中国逐月累积降水格点数据和1 km分辨率逐月平均气温格点数据,进行年降水量和年平均气温的累积计算。2000 - 2019年中国人口密度数据来源于WorldPop Hub,中国国内生产总值(GDP)来源于中国科学院地理科学与资源研究所。以上数据以5年为间隔,分别计算2000 - 2004年、2005 - 2009年、2010 - 2014年、2015 - 2019年的数据。Ae。采用分类随机森林(RF)模型对2000 - 2019年中国白纹伊蚊分布数据进行建模,预测白纹伊蚊的分布。全国白纹伊蚊分布情况分析。基于中国七大气候带的白纹伊蚊。通过准确度、精密度、召回率和接收者工作特征曲线下面积(AUC)来评价射频模型的性能,并通过平均降低精度(MDA)来评价射频模型中每个特征的重要性。结果:共检索到中文文献1 191篇,英文文献391篇,其中提供伊蚊采样点详细资料的文献580篇。白纹伊蚊和特定采样年份,符合纳入标准。共2 234只Ae。选取2000 - 2019年中国白纹伊蚊采样点,RF建模结果显示,全国白纹伊蚊种群数量总体呈下降趋势。2000 - 2019年白纹伊蚊分布区域主要分布在东南、西南两省,零星分布在辽宁等东北沿海地区。Ae分布的准确度、精密度、召回率和AUC分别为0.915 ~ 0.947、0.933 ~ 0.975、0.898 ~ 0.978和0.902 ~ 0.932。2000年至2019年不同时期的白纹伊蚊。在RF模型的所有特征中,种群密度是对伊蚊分布影响最大的因子。其次是GDP,所有气象变量对RF模型预测能力的贡献相对较小。在中国的七个主要气候带中,Ae。白纹伊蚊几乎全部分布在热带湿润边缘区、北亚热带湿润区和暖温带半湿润区。2000 - 2004年、2005 - 2009年、2010 - 2014年这3个区域的总分布面积占全国分布面积的100.0%,2015 - 2019年占全国分布面积的99.9%。暖温带半湿润地区白纹伊蚊分布面积由20.2%逐渐增加至30.2%。结论:Ae。白纹伊蚊主要分布于中国东南部和西南部省份,受人口和经济因素影响较大。中国暖温带半湿润地区正逐渐成为伊蚊分布的热点地区。蚊。
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引用次数: 0
[Effectiveness of integrated soil-borne nematodiasis and clonorchiasis control programmes in Guizhou Province from 2019 to 2023]. 贵州省2019 - 2023年土传线虫病和支睾吸虫病综合防治规划效果分析
Q3 Medicine Pub Date : 2025-05-23 DOI: 10.16250/j.32.1915.2024210
Y Li, A Zhu, A Li, H Xiang, J Dai, M Yuan, Y Geng
<p><strong>Objective: </strong>To evaluate the effectiveness of the integrated soil-borne nematodiasis and clonorchiasis control programmesin Guizhou Province from 2019 to 2023, so as to provide insights into formulation of appropriate parasitic disease control strategies in the province.</p><p><strong>Methods: </strong>From 2019 to 2023, Shiqian County in Tongren City and Zhenfeng County in Qianxi'nan Buyi and Miao Autonomous Prefecture were selected as pilot counties in Guizhou Province for soil-borne nematodiasis prevention and control programmes, and Rongjiang County in Qiandongnan Miao and Dong Autonomous Prefecture was selected as a pilot county for clonorchiasis control programmes. Integrated control measures were implemented in these 3 pilot counties, including surveys on human parasitic infections, deworming, health education and improved water and sanitation. At least 1 000 individuals were sampled from each of three pilot counties using a stratified multi-stage random sampling method from 2019 to 2023 for detection of soil-borne nematodes and <i>Clonorchis sinensis</i> human infections, and the awareness of soil-borne nematodiasis and clonorchiasis control knowledge was investigated among residents in pilot counties using questionnaire surveys. In addition, the implementation of deworming and coverage of sanitary toilets and safe drinking water were collected in three pilot counties.</p><p><strong>Results: </strong>The prevalence of soil-borne nematode human infections reduced from 7.78% (79/1 016), 2.80% (28/1 001) and 14.40% (144/1 000) in 2019 to 1.18% (12/1 014), 1.38% (14/1 001) and 2.73% (28/1 024) in 2023 in Shiqian County, Zhenfeng County, and Rongjiang County, respectively (χ<sup>2</sup> = 51.51, 4.91 and 88.54, all <i>P</i> values < 0.05). No <i>C. sinensis</i> human infections were detected in Shiqian County or Zhenfeng County from 2019 to 2023, and the prevalence of <i>C. sinensis</i> human infections reduced from 1.80% (18/1 000) in 2019 to 0.29% (3/1 024) in 2023 in Rongjiang County (χ<sup>2</sup> = 11.19, <i>P</i> < 0.05). Free deworming was provided to 574 cases with soil-borne nematode infections and 47 cases with <i>C. sinensis</i> infections detected in three pilot counties from 2019 to 2023. The coverage of health education was 100.00% in both Zhenfeng County and Shiqian County during the period from 2019 to 2023, and the awareness of soil-borne nematodiasis control knowledge increased from 93.60% (234/250) in Zhenfeng County and 70.97% (577/813) in Shiqian County in 2019 to 99.20% (248/250) and 98.40% (492/500) in 2023, respectively. The coverage of health education increased from 60.07% (161/268) in 2019 to 100.00% (250/250) in 2023 in Rongjiang County, and the awareness of clonorchiasis control knowledge increased from 80.67% (121/150) in 2019 to 99.20% (248/250) in 2023. The coverage of sanitary toilets increased from 48.89% (61 078/124 935), 34.20% (40 381/118 085) and 70.55% (60 604/85 920) in 2019 to 65.87% (
目的:评价贵州省2019 - 2023年土传线虫病和支睾吸虫病综合防治规划的效果,为贵州省制定适宜的寄生虫病防治策略提供依据。方法:2019 - 2023年,选择贵州省铜仁市石阡县和黔西南布衣苗族自治州镇丰县作为贵州省土传线虫病防治规划试点县,选择黔东南苗族侗族自治州容江县作为支睾吸虫病防治规划试点县。在这3个试验县实施了综合控制措施,包括人类寄生虫感染调查、驱虫、健康教育以及改善水和卫生设施。2019 - 2023年,采用分层多阶段随机抽样的方法,在3个试点县各抽取1 000人进行土壤线虫和华支睾吸虫病人感染检测,并采用问卷调查的方式调查试点县居民对土壤线虫病和华支睾吸虫病防治知识的认知情况。此外,在三个试验县开展了驱虫工作,覆盖了卫生厕所和安全饮用水。结果:石迁县、镇丰县和容江县土壤传人线虫感染率分别由2019年的7.78%(79/1 016)、2.80%(28/1 001)和14.40%(144/1 000)降至2023年的1.18%(12/1 014)、1.38%(14/1 001)和2.73% (28/1 024)(χ2 = 51.51、4.91和88.54,P值均< 0.05)。石迁县、镇丰县2019 - 2023年未检出中华按蚊人感染病例,容江县中华按蚊人感染病例由2019年的1.80%(18/1 000)降至2023年的0.29% (3/1 024)(χ2 = 11.19, P < 0.05)。2019 - 2023年,对3个试点县发现的574例土源性线虫感染病例和47例中华支原体感染病例进行免费驱虫。2019 - 2023年,镇丰县和石迁县的健康教育覆盖率均为100.00%,土壤线虫病防治知识知晓率分别从2019年的93.60%(234/250)和70.97%(577/813)提高到2023年的99.20%(248/250)和98.40%(492/500)。融江县健康教育覆盖率由2019年的60.07%(161/268)上升至2023年的100.00%(250/250),支睾吸虫病防治知识知晓率由2019年的80.67%(121/150)上升至2023年的99.20%(248/250)。5年研究期间,石迁县、镇丰县和容江县卫生厕所覆盖率分别从2019年的48.89%(61 078/124 935)、34.20%(40 381/118 085)和70.55%(60 604/85 920)提高到2023年的65.87%(77 649/117 878)、56.00%(63 252/112 948)和89.15%(72 737/81 590),石迁县和容江县的安全饮用水覆盖率均为100.00%。镇丰县从2019年的85.33%(100 765/118 085)上升到2023年的100.00%(112 948/112 948)。结论:实施2019 - 2023年5年综合防治规划后,贵州省石前县、镇丰县和荣江县土壤传播线虫人感染流行率显著下降,荣江县中华按蚊人感染流行率显著下降。以健康教育为主导的人类寄生虫病检查和治疗为基础的土传线虫病和支睾吸虫病综合控制方案的广泛应用似乎是合理的。
{"title":"[Effectiveness of integrated soil-borne nematodiasis and clonorchiasis control programmes in Guizhou Province from 2019 to 2023].","authors":"Y Li, A Zhu, A Li, H Xiang, J Dai, M Yuan, Y Geng","doi":"10.16250/j.32.1915.2024210","DOIUrl":"https://doi.org/10.16250/j.32.1915.2024210","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Objective: &lt;/strong&gt;To evaluate the effectiveness of the integrated soil-borne nematodiasis and clonorchiasis control programmesin Guizhou Province from 2019 to 2023, so as to provide insights into formulation of appropriate parasitic disease control strategies in the province.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;From 2019 to 2023, Shiqian County in Tongren City and Zhenfeng County in Qianxi'nan Buyi and Miao Autonomous Prefecture were selected as pilot counties in Guizhou Province for soil-borne nematodiasis prevention and control programmes, and Rongjiang County in Qiandongnan Miao and Dong Autonomous Prefecture was selected as a pilot county for clonorchiasis control programmes. Integrated control measures were implemented in these 3 pilot counties, including surveys on human parasitic infections, deworming, health education and improved water and sanitation. At least 1 000 individuals were sampled from each of three pilot counties using a stratified multi-stage random sampling method from 2019 to 2023 for detection of soil-borne nematodes and &lt;i&gt;Clonorchis sinensis&lt;/i&gt; human infections, and the awareness of soil-borne nematodiasis and clonorchiasis control knowledge was investigated among residents in pilot counties using questionnaire surveys. In addition, the implementation of deworming and coverage of sanitary toilets and safe drinking water were collected in three pilot counties.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;The prevalence of soil-borne nematode human infections reduced from 7.78% (79/1 016), 2.80% (28/1 001) and 14.40% (144/1 000) in 2019 to 1.18% (12/1 014), 1.38% (14/1 001) and 2.73% (28/1 024) in 2023 in Shiqian County, Zhenfeng County, and Rongjiang County, respectively (χ&lt;sup&gt;2&lt;/sup&gt; = 51.51, 4.91 and 88.54, all &lt;i&gt;P&lt;/i&gt; values &lt; 0.05). No &lt;i&gt;C. sinensis&lt;/i&gt; human infections were detected in Shiqian County or Zhenfeng County from 2019 to 2023, and the prevalence of &lt;i&gt;C. sinensis&lt;/i&gt; human infections reduced from 1.80% (18/1 000) in 2019 to 0.29% (3/1 024) in 2023 in Rongjiang County (χ&lt;sup&gt;2&lt;/sup&gt; = 11.19, &lt;i&gt;P&lt;/i&gt; &lt; 0.05). Free deworming was provided to 574 cases with soil-borne nematode infections and 47 cases with &lt;i&gt;C. sinensis&lt;/i&gt; infections detected in three pilot counties from 2019 to 2023. The coverage of health education was 100.00% in both Zhenfeng County and Shiqian County during the period from 2019 to 2023, and the awareness of soil-borne nematodiasis control knowledge increased from 93.60% (234/250) in Zhenfeng County and 70.97% (577/813) in Shiqian County in 2019 to 99.20% (248/250) and 98.40% (492/500) in 2023, respectively. The coverage of health education increased from 60.07% (161/268) in 2019 to 100.00% (250/250) in 2023 in Rongjiang County, and the awareness of clonorchiasis control knowledge increased from 80.67% (121/150) in 2019 to 99.20% (248/250) in 2023. The coverage of sanitary toilets increased from 48.89% (61 078/124 935), 34.20% (40 381/118 085) and 70.55% (60 604/85 920) in 2019 to 65.87% (","PeriodicalId":38874,"journal":{"name":"中国血吸虫病防治杂志","volume":"37 4","pages":"398-402"},"PeriodicalIF":0.0,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145410345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Prevalence of soil-transmitted nematode infections in Congjiang County of Guizhou Province in 2023]. 2023年贵州省从江县土壤传播性线虫感染率调查[j]。
Q3 Medicine Pub Date : 2025-05-23 DOI: 10.16250/j.32.1915.2025017
S Cai, D She, S Li, G Lin, L He, Z Shi, L Lu
<p><strong>Objective: </strong>To investigate the prevalence of human soil-transmitted nematode infections in Congjiang County, Guizhou Province in 2023, so as to provide insights into soil-transmitted nematodiasis prevention and control in the county.</p><p><strong>Methods: </strong>Congjiang County was divided into 5 areas according to geographical locations, and one township was randomly sampled from each area, followed by one administrative village randomly sampled from each township as the survey site. Two hundred permanent residents without deworming during the past three months were randomly sampled from each survey site using the random cluster sampling method. Participants' fecal samples were collected, soil-transmitted nematode eggs were detected using the KatoKatz technique and the prevalence of human soil-transmitted nematode infections was compared among participants. Mild, moderate and severe soil-transmitted nematode infections were classified according to eggs per gram (EPG), and the proportions of mild, moderate and severe infections were estimated. In addition, participants' family status and household sanitary toilets construction were investigated using questionnaires.</p><p><strong>Results: </strong>A total of 1 001 participants were included at 5 survey sites in Congjiang County, and the overall prevalence of soil-transmitted nematode infections was 19.08% (191/1 001). The prevalence rates of <i>Ascaris lumbricoides</i> and hookworm infections were 2.30% (23/1 001) and 1.90% (19/1 001), with all egg-positives identified as mild infections, and the prevalence of <i>Enterobius vermicularis</i> infections was 0.10% (1/1 001). The prevalence of <i>Trichuris trichiura</i> infections was 15.78% (158/1 001) among participants, and there was a significant difference in the prevalence among survey villages (χ<sup>2</sup> = 123.345, <i>P</i> < 0.001), with the highest prevalence detected in Liujia Village (39.00%), followed by in Longjiang Village (18.00%). There was an age-specific prevalence rate of <i>T. trichiura</i> infections among participants (χ<sup>2</sup> = 166.050, <i>P</i> < 0.001), and the highest prevalence was detected among participants at ages of 10 to 19 years (48.19%), followed by at ages of over 70 years (14.53%) and 50 to 59 years (13.04%). There was an occupation-specific prevalence rate of <i>T. trichiura</i> infections among participants (χ<sup>2</sup> = 74.134, <i>P</i> < 0.001), and the highest prevalence was detected among students (32.32%), followed by among workers/migrant workers (10.34%) and farmers (10.12%). There was an educational level-specific prevalence rate of <i>T. trichiura</i> infections among participants (χ<sup>2</sup> = 28.761, <i>P</i> < 0.001), and the highest prevalence was detected among participants with an educational level of primary school (21.60%), followed by among illiterate participants (12.03%). There was an ethnicity-specific prevalence rate of <i>T. trichiura</i> infections am
目的:了解贵州省从江县2023年人土传线虫感染情况,为该县防治提供依据。方法:将从江县按地理位置划分为5个区,每个区随机抽取1个乡镇,每个乡镇随机抽取1个行政村作为调查点。采用随机整群抽样法,在每个调查点随机抽取近三个月未驱虫的常住居民200名。收集参与者的粪便样本,使用KatoKatz技术检测土壤传播的线虫卵,并比较参与者中人类土壤传播的线虫感染的流行情况。按每克虫卵数(EPG)对土壤传播线虫感染进行轻、中、重度分类,估算轻、中、重度感染比例。此外,采用问卷调查的方式对参与者的家庭状况和家庭卫生厕所建设情况进行调查。结果:从江县5个调查点共纳入调查对象1 001人,土壤传播性线虫感染率为19.08%(191/1 001)。类蚓蛔虫和钩虫感染率分别为2.30%(23/1 001)和1.90%(19/1 001),卵阳性均为轻度感染,蚓蛔虫感染率为0.10%(1/1 001)。调查对象中毛滴虫感染率为15.78%(158/1 001),各调查村感染率差异有统计学意义(χ2 = 123.345, P < 0.001),其中柳家村感染率最高(39.00%),龙江村次之(18.00%)。调查对象中毛虫感染率存在年龄差异(χ2 = 166.050, P < 0.001),其中10 ~ 19岁感染率最高(48.19%),70岁以上感染率次之(14.53%),50 ~ 59岁感染率次之(13.04%)。调查对象中毛虫感染率存在职业差异(χ2 = 74.134, P < 0.001),其中学生感染率最高(32.32%),其次是农民工(10.34%)和农民(10.12%)。调查对象中毛虫感染率存在文化程度差异(χ2 = 28.761, P < 0.001),小学文化程度人群感染率最高(21.60%),文盲人群感染率次之(12.03%)。不同种族人群中毛螺旋体感染率差异有统计学意义(χ2 = 42.193, P < 0.001)。轻、中、重度毛滴虫感染比例分别为76.58%(121/158)、14.56%(23/158)和3.16%(5/158),重度感染均以小学生为主。123个家庭中检出毛虫感染,其中2人及2人以上的家庭27个(21.95%);共回收有效问卷1 001份,有卫生厕所家庭和无卫生厕所家庭毛虫感染率分别为14.69%(139/964)和34.55% (19/55)(χ2 = 15.410, P < 0.001)。结论:贵州省从江县2023年土壤传播性线虫感染率较高,其中毛虫感染尤为严重。建议针对小学生、中老年农民和外来务工人员采取强化土传线虫病防治措施。
{"title":"[Prevalence of soil-transmitted nematode infections in Congjiang County of Guizhou Province in 2023].","authors":"S Cai, D She, S Li, G Lin, L He, Z Shi, L Lu","doi":"10.16250/j.32.1915.2025017","DOIUrl":"https://doi.org/10.16250/j.32.1915.2025017","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Objective: &lt;/strong&gt;To investigate the prevalence of human soil-transmitted nematode infections in Congjiang County, Guizhou Province in 2023, so as to provide insights into soil-transmitted nematodiasis prevention and control in the county.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;Congjiang County was divided into 5 areas according to geographical locations, and one township was randomly sampled from each area, followed by one administrative village randomly sampled from each township as the survey site. Two hundred permanent residents without deworming during the past three months were randomly sampled from each survey site using the random cluster sampling method. Participants' fecal samples were collected, soil-transmitted nematode eggs were detected using the KatoKatz technique and the prevalence of human soil-transmitted nematode infections was compared among participants. Mild, moderate and severe soil-transmitted nematode infections were classified according to eggs per gram (EPG), and the proportions of mild, moderate and severe infections were estimated. In addition, participants' family status and household sanitary toilets construction were investigated using questionnaires.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;A total of 1 001 participants were included at 5 survey sites in Congjiang County, and the overall prevalence of soil-transmitted nematode infections was 19.08% (191/1 001). The prevalence rates of &lt;i&gt;Ascaris lumbricoides&lt;/i&gt; and hookworm infections were 2.30% (23/1 001) and 1.90% (19/1 001), with all egg-positives identified as mild infections, and the prevalence of &lt;i&gt;Enterobius vermicularis&lt;/i&gt; infections was 0.10% (1/1 001). The prevalence of &lt;i&gt;Trichuris trichiura&lt;/i&gt; infections was 15.78% (158/1 001) among participants, and there was a significant difference in the prevalence among survey villages (χ&lt;sup&gt;2&lt;/sup&gt; = 123.345, &lt;i&gt;P&lt;/i&gt; &lt; 0.001), with the highest prevalence detected in Liujia Village (39.00%), followed by in Longjiang Village (18.00%). There was an age-specific prevalence rate of &lt;i&gt;T. trichiura&lt;/i&gt; infections among participants (χ&lt;sup&gt;2&lt;/sup&gt; = 166.050, &lt;i&gt;P&lt;/i&gt; &lt; 0.001), and the highest prevalence was detected among participants at ages of 10 to 19 years (48.19%), followed by at ages of over 70 years (14.53%) and 50 to 59 years (13.04%). There was an occupation-specific prevalence rate of &lt;i&gt;T. trichiura&lt;/i&gt; infections among participants (χ&lt;sup&gt;2&lt;/sup&gt; = 74.134, &lt;i&gt;P&lt;/i&gt; &lt; 0.001), and the highest prevalence was detected among students (32.32%), followed by among workers/migrant workers (10.34%) and farmers (10.12%). There was an educational level-specific prevalence rate of &lt;i&gt;T. trichiura&lt;/i&gt; infections among participants (χ&lt;sup&gt;2&lt;/sup&gt; = 28.761, &lt;i&gt;P&lt;/i&gt; &lt; 0.001), and the highest prevalence was detected among participants with an educational level of primary school (21.60%), followed by among illiterate participants (12.03%). There was an ethnicity-specific prevalence rate of &lt;i&gt;T. trichiura&lt;/i&gt; infections am","PeriodicalId":38874,"journal":{"name":"中国血吸虫病防治杂志","volume":"37 3","pages":"289-293"},"PeriodicalIF":0.0,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144745382","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Changes in murine skin odors following Plasmodium infections and their impact on mosquito attraction]. [疟原虫感染后小鼠皮肤气味的变化及其对蚊子吸引力的影响]。
Q3 Medicine Pub Date : 2025-05-23 DOI: 10.16250/j.32.1915.2024276
J Li, M Li, B He, T Liu, F Zhu, J Zhang, W Xu

Objective: To investigate the alterations in skin volatile odors in mice following Plasmodium infections and their effect on mosquito attraction, and to analyze the changes in murine skin microbiota, so as to provide the scientific evidence for unraveling pathogen-host-vector interactions and management of vector-borne diseases.

Methods: Twenty 6-week-old female mice of the C57BL/6 strain were randomly divided into the infection and control groups, of 10 mice in each group. Mice in the infection group were each injected with 1 × 106 Plasmodium yoelii via the tail vein, and mice in the control group received an equiv-alent volume of phosphate-buffered saline (PBS). Blood samples were collected from mouse tail vein daily on days 1 to 6 post-infection for preparation of blood smears for microscopic observation to dynamically monitor changes in parasitaemias. A triplecage olfactometer was deployed to compare the numbers of Anopheles stephensi attraction to mice between the two groups. Mouse cutaneous volatile odors were collected with adsorbents and analyzed by gas-chromatography-mass-spectrometry (GC-MS) to identify odorous molecules, and the amounts of odorous molecules on mouse skin were compared between groups. In addition, mouse skin microbiota was collected with cottonswabs for 16S rRNA gene amplicon sequencing to compare the relative abundance of bacteria in mouse skin microbiota between the two groups.

Results: The parasitaemias were 0, (2.30 ± 0.87)%, (8.00 ± 4.34)%, (31.30 ± 3.51)%, (42.00 ± 2.65)% and (51.00 ± 3.61)% in mice in the infection group on days 1 to 6 post-infection with Plasmodium (F = 165.60, P < 0.001), and the gametocytaemias were 0, (0.14 ± 0.06)%, (0.39 ± 0.10)%, (0.63 ± 0.15)%, (1.10 ± 0.10)% and (1.53 ± 0.31)%, respectively (F = 44.58, P < 0.001). Pairwise comparisons showed the highest parasitaemias and gametocy taemias in mice 6 days post-infection (both P values < 0.05), and linear regression analysis revealed that both the parasitaemias (b = 11.36, t = 14.43, P < 0.001) and gametocytaemias (b = 0.31, t = 12.80, P < 0.001) appeared a tendency towards a rise over days. The proportions of mosquito attraction to mice were 50.45% (106/210), 49.55% (119/240), 49.18% (112/227), 55.87% (132/236), 66.84% (159/237), 61.32% (138/226) and 54.65% (126/230) in the infection group on the day of infection and on days 1 to 6 post-infection, which appeared a tendency towards a rise over days (χ2 = 9.54, P < 0.05). A total of 24 odors were identified in mouse skin surface, and Plasmodium-infected mice exhibited significantly higher enrichment of p-cresol (134 954.86 ± 40 485.75 vs. 34 700.13 ± 4 774.68; t = 4.260, P = 0.013), ethylbenzene (1 214 980.59 ± 111 546.49 vs. 355 445.01 ± 53 369.70; t = 12.04, <

目的:研究疟原虫感染后小鼠皮肤挥发性气味的变化及其对蚊虫吸引的影响,分析小鼠皮肤微生物群的变化,为揭示病原体-宿主-媒介相互作用和媒介传播疾病的管理提供科学依据。方法:选取6周龄C57BL/6株雌性小鼠20只,随机分为感染组和对照组,每组10只。感染组小鼠经尾静脉注射约氏疟原虫1 × 106,对照组小鼠注射等量的磷酸盐缓冲盐水(PBS)。感染后第1 ~ 6天每日从小鼠尾静脉采血,制备血涂片显微镜观察,动态监测寄生虫血症的变化。采用三孔嗅探仪比较两组小鼠对斯氏按蚊的吸引数量。采用吸附剂收集小鼠皮肤挥发性气味,采用气相色谱-质谱联用技术(GC-MS)对恶臭分子进行鉴定,并比较各组小鼠皮肤上恶臭分子的含量。此外,用棉签采集小鼠皮肤微生物群,进行16S rRNA基因扩增子测序,比较两组小鼠皮肤微生物群中细菌的相对丰度。结果:感染组小鼠感染疟原虫后第1 ~ 6天的寄生虫率分别为0、(2.30±0.87)%、(8.00±4.34)%、(31.30±3.51)%、(42.00±2.65)%、(51.00±3.61)% (F = 165.60, P < 0.001),配子细胞率分别为0、(0.14±0.06)%、(0.39±0.10)%、(0.63±0.15)%、(1.10±0.10)%、(1.53±0.31)% (F = 44.58, P < 0.001)。两两比较结果显示,感染后6 d小鼠寄生虫率和配子体贫血率最高(P值均< 0.05),线性回归分析显示,寄生虫率(b = 11.36, t = 14.43, P < 0.001)和配子体贫血率(b = 0.31, t = 12.80, P < 0.001)随时间的增加均呈上升趋势。感染组感染当日及感染后1 ~ 6 d的诱蚊率分别为50.45%(106/210)、49.55%(119/240)、49.18%(112/227)、55.87%(132/236)、66.84%(159/237)、61.32%(138/226)、54.65%(126/230),且呈上升趋势(χ2 = 9.54, P < 0.05)。总共24气味被确定在小鼠皮肤表面,和Plasmodium-infected小鼠表现出明显高于浓缩p-cresol(134 954.86±485.75 vs . 34 700.13±4 774.68;t = 4.260, P = 0.013),乙苯(1 214 980.59 111±546.49 vs 355 53 445.01±369.70;t = 12.04, P = 0.00)和壬醛(62 348.82 vs 215.11±11 24 040.15±8 557.10;t = 4.35, P = 0.02),和较低的内容甲苯(61 833.23±2 755.23 vs 152 906.21±199.69;t = 14.93, P = 0.00)、苯甲醛(583 921.81±39 764.63比1 071 368.84±254 069.28,t = 3.28, P = 0.00)、吲哚(10 991.89±582.76比27 275.57±3 995.59,t = 6.99, P = 0.00)。感染组小鼠皮肤表面链球菌相对丰度(0.29±0.12比0.12±0.09,t = 2.54, P = 0.03)和罗氏菌相对丰度(0.16±0.05比0.04±0.06,t = 3.52, P = 0.01)高于对照组,乳球菌相对丰度(0.02±0.04比0.27±0.20,t = 2.73, P = 0.03)低于对照组。结论:感染疟原虫后,小鼠皮肤散发的挥发性气味谱发生改变,导致对蚊子的吸引力增加。这种现象可能归因于寄生虫引起的皮肤微生物群的变化。
{"title":"[Changes in murine skin odors following <i>Plasmodium</i> infections and their impact on mosquito attraction].","authors":"J Li, M Li, B He, T Liu, F Zhu, J Zhang, W Xu","doi":"10.16250/j.32.1915.2024276","DOIUrl":"https://doi.org/10.16250/j.32.1915.2024276","url":null,"abstract":"<p><strong>Objective: </strong>To investigate the alterations in skin volatile odors in mice following <i>Plasmodium infections</i> and their effect on mosquito attraction, and to analyze the changes in murine skin microbiota, so as to provide the scientific evidence for unraveling pathogen-host-vector interactions and management of vector-borne diseases.</p><p><strong>Methods: </strong>Twenty 6-week-old female mice of the C57BL/6 strain were randomly divided into the infection and control groups, of 10 mice in each group. Mice in the infection group were each injected with 1 × 10<sup>6</sup> <i>Plasmodium yoelii</i> via the tail vein, and mice in the control group received an equiv-alent volume of phosphate-buffered saline (PBS). Blood samples were collected from mouse tail vein daily on days 1 to 6 post-infection for preparation of blood smears for microscopic observation to dynamically monitor changes in parasitaemias. A triplecage olfactometer was deployed to compare the numbers of <i>Anopheles stephensi</i> attraction to mice between the two groups. Mouse cutaneous volatile odors were collected with adsorbents and analyzed by gas-chromatography-mass-spectrometry (GC-MS) to identify odorous molecules, and the amounts of odorous molecules on mouse skin were compared between groups. In addition, mouse skin microbiota was collected with cottonswabs for <i>16S rRNA</i> gene amplicon sequencing to compare the relative abundance of bacteria in mouse skin microbiota between the two groups.</p><p><strong>Results: </strong>The parasitaemias were 0, (2.30 ± 0.87)%, (8.00 ± 4.34)%, (31.30 ± 3.51)%, (42.00 ± 2.65)% and (51.00 ± 3.61)% in mice in the infection group on days 1 to 6 post-infection with <i>Plasmodium</i> (<i>F</i> = 165.60, <i>P</i> < 0.001), and the gametocytaemias were 0, (0.14 ± 0.06)%, (0.39 ± 0.10)%, (0.63 ± 0.15)%, (1.10 ± 0.10)% and (1.53 ± 0.31)%, respectively (<i>F</i> = 44.58, <i>P</i> < 0.001). Pairwise comparisons showed the highest parasitaemias and gametocy taemias in mice 6 days post-infection (both <i>P</i> values < 0.05), and linear regression analysis revealed that both the parasitaemias (<i>b</i> = 11.36, <i>t</i> = 14.43, <i>P</i> < 0.001) and gametocytaemias (<i>b</i> = 0.31, <i>t</i> = 12.80, <i>P</i> < 0.001) appeared a tendency towards a rise over days. The proportions of mosquito attraction to mice were 50.45% (106/210), 49.55% (119/240), 49.18% (112/227), 55.87% (132/236), 66.84% (159/237), 61.32% (138/226) and 54.65% (126/230) in the infection group on the day of infection and on days 1 to 6 post-infection, which appeared a tendency towards a rise over days (χ<sup>2</sup> = 9.54, <i>P</i> < 0.05). A total of 24 odors were identified in mouse skin surface, and <i>Plasmodium</i>-infected mice exhibited significantly higher enrichment of p-cresol (134 954.86 ± 40 485.75 vs. 34 700.13 ± 4 774.68; <i>t</i> = 4.260, <i>P</i> = 0.013), ethylbenzene (1 214 980.59 ± 111 546.49 vs. 355 445.01 ± 53 369.70; <i>t</i> = 12.04, <","PeriodicalId":38874,"journal":{"name":"中国血吸虫病防治杂志","volume":"37 4","pages":"362-370"},"PeriodicalIF":0.0,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145410361","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Global research hotspots and trends of wildlife - associated zoonoses from 1990 to 2024]. [1990 - 2024年全球野生动物相关人畜共患病研究热点与趋势]。
Q3 Medicine Pub Date : 2025-05-22 DOI: 10.16250/j.32.1915.2024268
Z Zhang, Y Deng, S Wu

Objective: To investigate the global hotspot issues and future directions of wildlife-associated zoonoses, so as to provide insights into identification of future research proprieties of wildlife-associated zoonoses.

Methods: Research and review articles pertaining to wildlife-associated zoonoses were retrieved from the Web of Science Core Collection from 1990 to 2024, and the annual publication trends and visualization maps for research collaborations among authors, institutions and countries were analyzed using the software CiteSpace 6.3.R3. In addition, the keyword co-occurrence, burst and clustering maps and co-citation clustering maps were created to identify the research hotspots and frontier landscapes of wildlife-associated zoonoses.

Results: A total of 2 479 English publications were included in this bibliometric analysis. The annual publication output started to increase since 2001, and peaked in 2021 (336 publications). There were 12 authors with more than 10 publications from 1990 to 2024. The top 10 most productive institutions included 8 colleges or universities, with University of California, Davis ranking first (114 publications). The United States of America played a significant mediating role in international collaborations (betweenness centrality = 0.31) and produced the largest number of publications (1 004), and the collaboration network maps among authors, institutions, and countries all appeared localized clustering with overall fragmentation. Keyword co-occurrence analysis identified high-frequency terms including infection (489 occurrences), prevalence (398 occurrences), transmission (351 occurrences), wildlife (330 occurrences) and epidemiology (231 occurrences), and keyword burst analysis revealed the research focus of wildlife-associated zoonoses shifting from specific zoonotic diseases such as trichinellosis and tuberculosis to interdisciplinary domains including wildlife trade, virulence, One Health, and antimicrobial resistance. Keyword clustering analysis identified antimicrobial resistance and One Health as current research hotspots, and co-citation clustering analysis showed human health, agricultural intensification, and first case reports as theoretical basis for wildlife-associated zoonoses.

Conclusions: The wildlife-associated zoonoses research has expanded exponentially across the world. Advocating for One health concept is an important task for management of emerging and re-emerging zoonoses currently and in future.

目的:探讨全球野生人畜共患病研究的热点问题及未来发展方向,为确定野生人畜共患病的未来研究方向提供参考。方法:检索Web of Science Core Collection中1990 ~ 2024年与野生动物相关的人畜共患病相关的研究和综述文章,利用CiteSpace 6.3.R3软件分析作者、机构和国家之间的年度研究合作趋势和可视化地图。构建关键词共现图、突发聚类图和共被引聚类图,识别野生动物相关人畜共患病的研究热点和前沿景观。结果:文献计量学分析共纳入2 479篇英文出版物。从2001年开始,年发表量开始增加,到2021年达到顶峰(336篇)。1990 - 2024年发表10篇以上论文的作者有12人。产出最高的10所大学包括8所学院或大学,加州大学戴维斯分校以114篇论文排名第一。美国在国际合作中发挥了显著的中介作用(中间度中心= 0.31),发表的论文数量最多(1 004篇),作者、机构和国家之间的合作网络地图均呈现局部聚类,整体呈现碎片化。关键词共现分析确定了包括感染(489次)、流行(398次)、传播(351次)、野生动物(330次)和流行病学(231次)在内的高频术语,关键词突发分析揭示了野生动物相关人畜共患病的研究重点从旋毛虫病和结核病等特定人畜共患病转移到包括野生动物贸易、毒力、One Health、以及抗菌素耐药性。关键词聚类分析发现抗生素耐药性和One Health是当前的研究热点,共引聚类分析显示人类健康、农业集约化和首次病例报告是野生动物相关人畜共患病的理论基础。结论:与野生动物相关的人畜共患病研究在世界范围内呈指数增长。倡导“一个健康”理念是当前和今后防治新发和再发人畜共患病的重要任务。
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引用次数: 0
[Establishment and preliminary evaluation of recombinase-aided isothermal nucleic acid amplification combined with nanopore sequencing for identification of Plasmodium species]. [重组酶辅助等温核酸扩增结合纳米孔测序技术鉴定疟原虫种类的建立及初步评价]。
Q3 Medicine Pub Date : 2025-05-19 DOI: 10.16250/j.32.1915.2025003
W Lin, L Chen, C Zhang, H Wei, C Tang, R Wang, L Lin, M Lin
<p><strong>Objective: </strong>To develop a novel assay based on recombinase-aided isothermal nucleic acid amplification (RAA) and nanopore sequencing for species identification of <i>Plasmodium vivax</i>, <i>P. ovale</i>, <i>P. malariae</i> and <i>P. falciparum</i>, and to prelimi-narily assess its detection performance.</p><p><strong>Methods: </strong>Dried blood spot samples were collected from 89 malaria patients. Genomic DNA of <i>Plasmodium</i> was extracted from dried blood spots using the Chelex-100 method, and the species of <i>Plasmodium</i> was identified using TaqMan real-time fluorescence quantitative reverse transcription PCR, real-time quantitative reverse transcription PCR(RT-qPCR) and nested PCR (nPCR) assays. Then, 8 sets of specific RAA primers were designed targeting the 18S ribosomal RNA (<i>18S rRNA</i>) genes of <i>P. vivax</i>, <i>P. ovale</i>, <i>P. malariae</i> and <i>P. falciparum</i>. The optimal primer combination was selected for amplification of the extracted <i>Plasmodium</i> DNA samples, and the 49 samples with the best amplification effect were selected for nanopore sequencing. The species identification of 49 dried blood spot samples from malaria patients was compared by RT-qPCR assay, nPCR assay and RAA-nanopore sequencing, and the sensitivity, specificity and accuracy of RT-qPCR assay and RAA-nanopore sequencing were evaluated with nPCR identification as the gold standard.</p><p><strong>Results: </strong>RAA amplification showed that among the 8 primer combinations, only the F1R2 combination produced a single fragment, and the band of the amplification product was the brightest; therefore, this primer combination was selected for RAA amplification of 89 <i>Plasmodium</i> genomic DNA samples. RAA-nanopore sequencing successfully amplified the <i>18S rRNA</i> gene of 4 <i>Plasmodium</i> species in dried blood spot samples from malaria patients. Among the blood spot samples positive for RAA amplification, 49 samples with a single, clear and bright target band were selected for nanopore sequencing. Of these 49 samples, nPCR identified <i>P. falciparum</i> infection in 22 samples, <i>P. malariae</i> infection in 6 samples, <i>P. vivax</i> infection in 6 samples, <i>P. ovale</i> infection in 14 samples and <i>P. falciparum-P. malariae</i> mixed infection in one sample, and RT-qPCR detected <i>P. falciparum</i> infection in 25 samples, <i>P. malariae</i> infection in 5 samples, <i>P. vivax</i> infection in 6 samples and <i>P. ovale</i> infection in 14 samples, while RAA-nanopore sequencing identified <i>P. falciparum</i> infection in 23 samples, <i>P. malariae</i> infection in 6 samples, <i>P. vivax</i> infection in 6 samples, <i>P. ovale</i> infection in 13 samples and <i>P. falciparum</i>-<i>P. malariae</i> mixed infection in one sample. If nPCR assay served as the gold standard, the sensitivity, specificity and accuracy of RAA-nanopore sequencing were 92.00%, 97.33% and 96.00% for species identification of malaria
目的:建立一种基于重组酶辅助等温核酸扩增(RAA)和纳米孔测序的间日疟原虫、卵形疟原虫、疟疾疟原虫和恶性疟原虫物种鉴定方法,并对其检测性能进行初步评价。方法:采集89例疟疾患者的干血斑标本。采用Chelex-100法提取干血斑疟原虫基因组DNA,采用TaqMan实时荧光定量反转录PCR、实时定量反转录PCR(RT-qPCR)和巢式PCR(nPCR)法鉴定疟原虫种类。然后,设计了8组针对间日疟原虫、卵形疟原虫、疟疾疟原虫和恶性疟原虫18S核糖体RNA (18S rRNA)基因的特异性RAA引物。选取最佳引物组合对提取的疟原虫DNA样品进行扩增,选取扩增效果最好的49个样品进行纳米孔测序。采用RT-qPCR法、nPCR法和raa -纳米孔测序法对49份疟疾患者干血斑标本进行物种鉴定,并以nPCR鉴定为金标准,评价RT-qPCR法和raa -纳米孔测序法的灵敏度、特异性和准确性。结果:RAA扩增结果显示,8个引物组合中,只有F1R2组合产生了单个片段,扩增产物的条带最亮;因此,选择该引物组合对89份疟原虫基因组DNA进行RAA扩增。raa -纳米孔测序成功扩增了疟疾患者血斑干样中4种疟原虫的18S rRNA基因。在RAA扩增阳性的血斑样本中,选取目标条带单一、清晰、明亮的49份样本进行纳米孔测序。在这49份样本中,nPCR鉴定出22份样本感染了恶性疟原虫,6份样本感染了疟疾疟原虫,6份样本感染了间日疟原虫,14份样本感染了卵形疟原虫,14份样本感染了恶性疟原虫。RT-qPCR检测到恶性疟原虫感染25例,疟疾疟原虫感染5例,间日疟原虫感染6例,卵形疟原虫感染14例;raa纳米孔测序检测到恶性疟原虫感染23例,疟疾疟原虫感染6例,间日疟原虫感染6例,卵形疟原虫感染13例,恶性疟原虫-卵形疟原虫。一个样本存在疟疾混合感染。以nPCR为金标准,raa纳米孔测序对疟原虫种类鉴定的灵敏度、特异度和准确度分别为92.00%、97.33%和96.00%,均高于RT-qPCR法的88.24%、97.32%和95.00%。结论:本研究建立的raa纳米孔测序方法对疟原虫种类鉴定具有敏感性、特异性和准确性,可作为传统疟原虫检测技术的补充。
{"title":"[Establishment and preliminary evaluation of recombinase-aided isothermal nucleic acid amplification combined with nanopore sequencing for identification of <i>Plasmodium</i> species].","authors":"W Lin, L Chen, C Zhang, H Wei, C Tang, R Wang, L Lin, M Lin","doi":"10.16250/j.32.1915.2025003","DOIUrl":"https://doi.org/10.16250/j.32.1915.2025003","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Objective: &lt;/strong&gt;To develop a novel assay based on recombinase-aided isothermal nucleic acid amplification (RAA) and nanopore sequencing for species identification of &lt;i&gt;Plasmodium vivax&lt;/i&gt;, &lt;i&gt;P. ovale&lt;/i&gt;, &lt;i&gt;P. malariae&lt;/i&gt; and &lt;i&gt;P. falciparum&lt;/i&gt;, and to prelimi-narily assess its detection performance.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;Dried blood spot samples were collected from 89 malaria patients. Genomic DNA of &lt;i&gt;Plasmodium&lt;/i&gt; was extracted from dried blood spots using the Chelex-100 method, and the species of &lt;i&gt;Plasmodium&lt;/i&gt; was identified using TaqMan real-time fluorescence quantitative reverse transcription PCR, real-time quantitative reverse transcription PCR(RT-qPCR) and nested PCR (nPCR) assays. Then, 8 sets of specific RAA primers were designed targeting the 18S ribosomal RNA (&lt;i&gt;18S rRNA&lt;/i&gt;) genes of &lt;i&gt;P. vivax&lt;/i&gt;, &lt;i&gt;P. ovale&lt;/i&gt;, &lt;i&gt;P. malariae&lt;/i&gt; and &lt;i&gt;P. falciparum&lt;/i&gt;. The optimal primer combination was selected for amplification of the extracted &lt;i&gt;Plasmodium&lt;/i&gt; DNA samples, and the 49 samples with the best amplification effect were selected for nanopore sequencing. The species identification of 49 dried blood spot samples from malaria patients was compared by RT-qPCR assay, nPCR assay and RAA-nanopore sequencing, and the sensitivity, specificity and accuracy of RT-qPCR assay and RAA-nanopore sequencing were evaluated with nPCR identification as the gold standard.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;RAA amplification showed that among the 8 primer combinations, only the F1R2 combination produced a single fragment, and the band of the amplification product was the brightest; therefore, this primer combination was selected for RAA amplification of 89 &lt;i&gt;Plasmodium&lt;/i&gt; genomic DNA samples. RAA-nanopore sequencing successfully amplified the &lt;i&gt;18S rRNA&lt;/i&gt; gene of 4 &lt;i&gt;Plasmodium&lt;/i&gt; species in dried blood spot samples from malaria patients. Among the blood spot samples positive for RAA amplification, 49 samples with a single, clear and bright target band were selected for nanopore sequencing. Of these 49 samples, nPCR identified &lt;i&gt;P. falciparum&lt;/i&gt; infection in 22 samples, &lt;i&gt;P. malariae&lt;/i&gt; infection in 6 samples, &lt;i&gt;P. vivax&lt;/i&gt; infection in 6 samples, &lt;i&gt;P. ovale&lt;/i&gt; infection in 14 samples and &lt;i&gt;P. falciparum-P. malariae&lt;/i&gt; mixed infection in one sample, and RT-qPCR detected &lt;i&gt;P. falciparum&lt;/i&gt; infection in 25 samples, &lt;i&gt;P. malariae&lt;/i&gt; infection in 5 samples, &lt;i&gt;P. vivax&lt;/i&gt; infection in 6 samples and &lt;i&gt;P. ovale&lt;/i&gt; infection in 14 samples, while RAA-nanopore sequencing identified &lt;i&gt;P. falciparum&lt;/i&gt; infection in 23 samples, &lt;i&gt;P. malariae&lt;/i&gt; infection in 6 samples, &lt;i&gt;P. vivax&lt;/i&gt; infection in 6 samples, &lt;i&gt;P. ovale&lt;/i&gt; infection in 13 samples and &lt;i&gt;P. falciparum&lt;/i&gt;-&lt;i&gt;P. malariae&lt;/i&gt; mixed infection in one sample. If nPCR assay served as the gold standard, the sensitivity, specificity and accuracy of RAA-nanopore sequencing were 92.00%, 97.33% and 96.00% for species identification of malaria","PeriodicalId":38874,"journal":{"name":"中国血吸虫病防治杂志","volume":"37 4","pages":"355-361"},"PeriodicalIF":0.0,"publicationDate":"2025-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145410103","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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中国血吸虫病防治杂志
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