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Major Histocompatibility Complex Allele Persistence in Eurasia and America in the Genus Carduelis (Spinus) During Million Years Carduelis(Spinus)属主要组织相容性复合体等位基因在欧亚大陆和美洲的百万年持续存在
Q3 Agricultural and Biological Sciences Pub Date : 2017-10-31 DOI: 10.2174/1874453201710010092
A. Arnaiz-Villena, V. Ruíz-del-Valle, E. Muñiz, José Palacio-Gruber, C. Campos, E. Gomez-Casado, J. Villa, Ignacio Serrano-Vela
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引用次数: 3
Molecular Systematics, Taxonomy and Distribution of the Pyrrhura Picta–Leucotis Complex picrhura - leucotis复合体的分子系统学、分类与分布
Q3 Agricultural and Biological Sciences Pub Date : 2017-05-19 DOI: 10.2174/1874453201710010053
T. Arndt, M. Wink
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引用次数: 3
Seabirds At-Sea Surveys: The Line-Transect Method Outperforms the Point-Transect Alternative 海鸟海上调查:线剖面法优于点剖面法
Q3 Agricultural and Biological Sciences Pub Date : 2017-05-16 DOI: 10.2174/1874453201710010042
F. Bolduc, D. Fifield
Methods: We tested whether modeling of detection probabilities, and density estimates with their coefficients of variation obtained from the point-transect method provided more robust and precise results than the more commonly used line-transect method. We subdivided our data by species groups (alcids, and aerialist species), and into two behavior categories (flying vs. swimming). We also computed density estimates from the strip-transect and point count methods, to relate differences between transect methods to their counterparts that do not consider a decreasing probability of detection with distance from the observer. We used data collected in the Gulf of St. Lawrence between 2009 and 2010 when observers simultaneously conducted lineand point-transect sampling.
方法:我们测试了点样条法获得的检测概率和密度估计及其变异系数的建模是否比更常用的样条法提供了更稳健和精确的结果。我们将数据按物种组(alcids和空中飞人物种)细分,并分为两个行为类别(飞行和游泳)。我们还计算了条带样带和点计数方法的密度估计值,以将样带方法与不考虑检测概率随观察者距离的降低而降低的对应方法之间的差异联系起来。我们使用了2009年至2010年间在圣劳伦斯湾收集的数据,当时观测者同时进行了线性和点样带采样。
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引用次数: 5
Bird Survey of the Abobo-Etetak hill (Yaounde, Cameroon) and a Glance on the Avifaunistic Diversity of this Hill (Abobo-Etetak) 喀麦隆雅温得Abobo-Etetak山鸟类调查及该山鸟类多样性一览
Q3 Agricultural and Biological Sciences Pub Date : 2017-03-31 DOI: 10.2174/1874453201710010031
Billy Nguembock, Mahamat Sali, K. William, Azang Esther Diane Olivia, Guehoada Yollande, Factheu Clinton, Nkingop Djopmou Philippe Herve
RESEARCH ARTICLE Bird Survey of the Abobo-Etetak Hill (Yaounde, Cameroon) and a Glance on the Avifaunistic Diversity of this Hill (Abobo-Etetak) Billy Nguembock, Mahamat Sali, Kemtchouan William, Azang Esther Diane Olivia, Guehoada Yollande, Factheu Clinton and Nkingop Djopmou Philippe Herve Laboratoire de Zoologie, Département de Biologie et Physiologie Animales, Université de Yaoundé I, BP 812 Yaoundé, Cameroun Département de Sciences Biologiques, Université de Montréal, C.P. 6128, succursale du Centre-ville, Montréal, QC, H3C 3J7, Canada
Abobo Etetak山(喀麦隆雅温得)的研究文章鸟类调查和该山鸟类多样性概述Billy Nguembock、Mahamat Sali、Kemchouan William、Azang Esther Diane Olivia、Guehoada Yollande、Factheu Clinton和Nkingop Djopmou Philippe Herve动物学实验室,雅温得大学动物生物学和生理学系,邮政信箱812雅温得,喀麦隆蒙特利尔大学生物科学系,邮政信箱6128,市中心分公司,蒙特利尔,QC,H3C 3J7,加拿大
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引用次数: 1
The Bacterial Community Found on the surface Purple Martin (Progne subis) Eggs 紫Martin(Progne subis)卵表面的细菌群落
Q3 Agricultural and Biological Sciences Pub Date : 2017-02-28 DOI: 10.2174/1874453201710010023
Beth A. Potter, Mary M. Sperry, Dan Hoang, K. Pander, S. Weaver, Aimee N. Day, Kelly M. Hedderick, M. Rutter, Robert A. Aeppli
RESEARCH ARTICLE The Bacterial Community Found on the surface Purple Martin (Progne subis) Eggs Beth A. Potter, Mary M. Sperry, Dan D. Hoang, Kaitlin C. Pander, Sean G. Weaver, Aimee N. Day, Kelly M. Hedderick, Michael A. Rutter and Robert A. Aeppli School of Science, The Behrend College, Pennsylvania State University, Erie, Pennsylvania, USA Purple Martin Conservation Association, Tom Ridge Environmental Center, Erie, Pennsylvania, USA
研究文章在表面发现的细菌群落紫马丁(Progne subis)蛋Beth A.Potter、Mary M.Sperry、Dan D.Hoang、Kaitlin C.Pander、Sean G.Weaver、Aimee N.Day、Kelly M.Hedderick、Michael A.Rutter和Robert A.Aeppli理学院、宾夕法尼亚州立大学Behrend学院、宾夕法尼亚州伊利市、美国紫马丁保护协会,Tom Ridge环境中心,美国宾夕法尼亚州伊利
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引用次数: 1
Age-related Changes in the Response of Embryonic Motility to Acute Hypoxia during the Third Quarter of Chick Embryogenesis 在鸡胚胎发生的第三季度,胚胎运动对急性缺氧反应的年龄相关变化
Q3 Agricultural and Biological Sciences Pub Date : 2017-01-31 DOI: 10.2174/1874453201710010010
M. Nechaeva, T. Alekseeva
Environmental factors may affect the growth, size, phenotype, behavior, and other characteristics of avian embryos at different developmental stages; however, the roles of individual embryonic physiological systems in these effects remain largely unclear. Embryonic motility is an important component of the prenatal development observed almost throughout embryogenesis and may be a precursor of post-hatching motor behavior. The influences of the environment on the development of motor behavior during embryogenesis (notably the embryonic motility affected by hypoxia) remain poorly studied. Consequently, using the chick embryo, we investigated the effect of acute hypoxia (10% or 5% О2 for 20 or 40 min) on embryonic cyclic motility at incubation days (D) 10, 12, 14, and 15 using in vivo video recording. Hypoxia inhibited motility; specifically, the average duration of activity and inactivity phases during hypoxic exposure were shortened and prolonged, respectively. Age-related changes in the responses to 10% and 5% O2 differed. The time course of the motility response to acute hypoxia varied during the D10-15 period and demonstrates that the embryo was capable of recovering motility under hypoxia. The recovery was likely enhanced with age due to maturation of regulatory capacity.
环境因素可能影响不同发育阶段禽类胚胎的生长、大小、表型、行为等特征;然而,个体胚胎生理系统在这些影响中的作用仍不清楚。胚胎运动是产前发育的一个重要组成部分,几乎在整个胚胎发生过程中都可以观察到,并且可能是孵化后运动行为的前兆。环境对胚胎发育过程中运动行为的影响(特别是缺氧对胚胎运动的影响)的研究仍然很少。因此,我们利用鸡胚,研究了急性缺氧(10%或5% О2 20或40分钟)对孵化第10、12、14和15天胚胎循环运动的影响。缺氧抑制运动;具体而言,低氧暴露期间活动和不活动阶段的平均持续时间分别缩短和延长。10%和5%氧气的反应与年龄相关的变化有所不同。急性缺氧运动反应的时间过程在D10-15期间发生变化,表明胚胎在缺氧条件下能够恢复运动能力。由于调节能力的成熟,恢复可能随着年龄的增长而增强。
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引用次数: 0
Distribution of Yellow Wagtail forms Motacilla flava – complex in the north of Western Siberia, Russia 俄罗斯西西伯利亚北部黄尾蛾复合体的分布
Q3 Agricultural and Biological Sciences Pub Date : 2017-01-26 DOI: 10.2174/1874453201710010001
M. Golovatin, V. Sokolov
Abstract: On the basis of the materials obtained from the studies carried out from 2000 to 2015, we present the data on distribution of the Yellow Wagtail forms in the north of Western Siberia, i.e. within the overlapping boundaries of the ranges of a complex set of several polytypical forms – Motacilla flava sensu lato. Four forms have been identified here: two forms from the group of Western Yellow Wagtails (M. f. thunbergi and M. f. beema & flava) and two forms from the group of Eastern Yellow Wagtails (M. t. plexa and M. t. tschutschensis). Western “black-headed” form M. f. thunbergi is spread in the area of the northern taiga, forest tundra and south shrub tundra within the Ob River basin, while eastern “black-headed” form M. t. plexa is found in the shrubby tundra and further to the east from the Ob River in forest tundra and northern taiga. Western “light headed” wagtails M. f. beema & flava spread as far as 65o05'N along the floodplain of the Ob River. Eastern “light-headed” wagtail M. t. tschutschensis penetrates the Taz peninsula and, through the anthropogenic sites, the north-east coast of the Yamal Peninsula, i.e. the Sabetta area as far as 71o14'N. The entire range of the Yellow Wagtail is characterized by the interchange of zones inhabited by “black-headed” (without the expressed eyebrows on males) and “light-headed” (with notable eyebrows on males or white-headed) forms from the north to the south.
摘要:根据2000年至2015年进行的研究获得的材料,我们提供了西西伯利亚北部黄花尾形态分布的数据,即在一组复杂的几种多型形态——黄蛾的重叠边界内。这里已经鉴定出四种形式:两种形式来自西部黄颡鱼群(M.f.thunbergi和M.f.beema&flava),两种形式属于东部黄颡鱼群(M.t.plexa和M.t.tschutschensis)。在鄂毕河流域的北部针叶林、森林苔原和南部灌木苔原地区分布着西部“黑头”形态的图恩贝吉,而在灌木苔原和鄂毕河以东的森林苔原及北部针叶林中发现了东部“黑头形”形态的丛枝苔原。西部“光头”摇尾蛇M.f.beema和flava沿着鄂毕河泛滥平原蔓延至北纬65度05分。东部的“光头”摇尾M.t.tschutschensis穿过塔兹半岛,并通过人为活动地点,穿过亚马尔半岛的东北海岸,即Sabetta地区,最远可达71o14'N。整个黄尾的特征是,从北到南,“黑头”(雄性没有明显的眉毛)和“光头”(雄性或白头有显著的眉毛)所居住的区域交替。
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引用次数: 1
An Approach to Identifying Bird Songs: A Key to more than 300 Songs in the Pipeline Road Area, Soberanía National Park, Panama 识别鸟类鸣声的方法:管道路地区300多首鸣声的关键,Soberanía国家公园,巴拿马
Q3 Agricultural and Biological Sciences Pub Date : 2016-12-29 DOI: 10.2174/1874453201609010070
K. Livezey
Background: Identifying bird songs is an integral part of censusing, watching, and enjoying birds. However, doing so can be difficult due to the large variety of songs and, often, subtle differences among them. One way to facilitate this is to place songs into a descriptive key, thereby analyzing each song as well as identifying similarities and differences among songs.
背景:识别鸟类鸣叫是鸟类普查、观察和欣赏的重要组成部分。然而,这样做可能很困难,因为歌曲种类繁多,而且它们之间往往存在细微的差异。一种简化的方法是将歌曲放入一个描述性的键中,从而分析每首歌曲并识别歌曲之间的异同。
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引用次数: 3
Current Topics in Avian Conservation Genetics with Special Reference to the Southwestern Willow Flycatcher 鸟类保护遗传学的最新进展——以西南柳捕蝇鸟为例
Q3 Agricultural and Biological Sciences Pub Date : 2016-12-22 DOI: 10.2174/1874453201609010060
R. Zink
It is sometimes said that scientists are entitled to their own opinions but not their own set of facts. This suggests that application of the scientific method ought to lead to a single conclusion from a given set of data. However, sometimes scientists have conflicting opinions about which analytical methods are most appropriate or which subsets of existing data are most relevant, resulting in different conclusions. Thus, scientists might actually lay claim to different sets of facts. However, if a contrary conclusion is reached by selecting a subset of data, this conclusion should be carefully scrutinized to determine whether consideration of the full data set leads to different conclusions. This is important because conservation agencies are required to consider all of the best available data and make a decision based on them. Therefore, exploring reasons why different conclusions are reached from the same body of data has relevance for management of species. The purpose of this paper was to explore how two groups of researchers can examine the same data and reach opposite conclusions in the case of the taxonomy of the endangered subspecies Southwestern Willow Flycatcher (Empidonax traillii extimus). It was shown that use of subsets of data and characters rather than reliance on entire data sets can explain conflicting conclusions. It was recommend that agencies tasked with making conservation decisions rely on analyses that include all relevant molecular, ecological, behavioral, and morphological data, which in this case show that the subspecies is not valid, and hence its listing is likely not warranted.
人们有时会说,科学家有权持有自己的观点,但不能持有自己的一套事实。这表明,科学方法的应用应该从一组给定的数据中得出一个单一的结论。然而,有时科学家们对哪种分析方法最合适或哪些现有数据子集最相关有矛盾的意见,导致不同的结论。因此,科学家们实际上可能声称有不同的事实。然而,如果通过选择数据子集得出相反的结论,则应仔细审查该结论,以确定考虑整个数据集是否会得出不同的结论。这很重要,因为保护机构需要考虑所有最好的可用数据,并在此基础上做出决定。因此,探究从同一数据体得出不同结论的原因对物种管理具有重要意义。本文的目的是探讨两组研究人员如何在濒危亚种西南柳捕蝇草(emidonax traillii extimus)的分类中对相同的数据进行分析,并得出相反的结论。研究表明,使用数据和字符的子集而不是依赖整个数据集可以解释相互矛盾的结论。有人建议,负责作出保护决定的机构依赖于包括所有相关分子、生态、行为和形态数据的分析,在这种情况下,这些数据表明该亚种是无效的,因此它的名单可能没有根据。
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引用次数: 1
New Microsatellite Markers for the Common Tern (Sterna hirundo) Developed with 454 Shot-Gun Pyrosequencing 利用454散弹枪焦磷酸测序技术建立了新的普通燕鸥微卫星标记
Q3 Agricultural and Biological Sciences Pub Date : 2016-12-19 DOI: 10.2174/1874453201609010050
Susann Janowski, Ina Gross, H. Sauer-Gürth, D. Tietze, Markus A. Grohme, M. Frohme, P. Becker, M. Wink
Long term studies, focusing on populationand socio-biology research, require the unequivocal identification of individuals. DNA studies with Short Tandem Repeats (STR loci) became a widespread tool in population genetics. We used the nextgeneration sequencing (NGS) approach with 454 shot-gun pyrosequencing to identify 13 new polymorphic STR loci for the Common Tern, Sterna hirundo. To enlarge the marker set we added two more loci originally developed for Black-legged Kittiwake (Rissa tridactyla) and Red-billed Gull (Chroicocephalus scopulinus) and arranged these 15 loci into three multiplex PCR panels for high throughput genotyping. Loci characterization demonstrated that our marker set is of high quality. A PIC value of about 0.67 and a power of exclusion value of 0.99 were reached. Deviation from Hardy-Weinberg expectations of some loci and low frequencies for null alleles are interpreted as a result of inbreeding and founder effect in the investigated tern colony. We used a test data set of this well-studied breeding colony of Common Tern at Banter Lake, Wilhelmshaven, Germany, to perform a parentage test. Parent-chick relationships, known from the social pedigree of that colony, were compared with genetically calculated ones. In order to test our markers and the used parentage program COLONY, we conducted six competing data sets with varying completeness of included parental genotypes. By including fully sampled parent pairs of known family assignment, results were correct for nest mates, single parents and parent pairs. Our marker set provides a powerful tool to investigate life-time reproductive success and other issues of population and socio-biology for Common Terns, e.g. in the aforementioned colony monitored for decades.
长期研究的重点是人口和社会生物学研究,需要明确识别个体。利用短串联重复序列(STR)进行DNA研究已成为群体遗传学研究中广泛使用的工具。我们使用下一代测序(NGS)方法与454散弹枪焦磷酸测序(shot-gun pyrosequencing)技术鉴定了13个新的STR多态性位点。为了扩大标记集,我们增加了原为黑腿三趾鸥(Rissa tridactyla)和红嘴鸥(Chroicocephalus scopulinus)开发的两个位点,并将这15个位点排列在3个多重PCR板中进行高通量基因分型。位点鉴定表明我们的标记集是高质量的。PIC值约为0.67,排除系数约为0.99。一些基因座偏离Hardy-Weinberg预期和零等位基因的低频率被解释为研究燕鸥群体中近亲繁殖和奠基人效应的结果。我们使用了德国威廉港班特湖这个被充分研究过的普通燕鸥繁殖地的测试数据集来进行亲子鉴定。从该群体的社会谱系中得知的亲子关系与基因计算的关系进行了比较。为了测试我们的标记和使用的亲本程序COLONY,我们进行了6个相互竞争的数据集,包括不同完整性的亲本基因型。通过对已知家庭分配的父母对进行全面抽样,结果对配偶、单亲父母和父母对都是正确的。我们的标记集提供了一个强大的工具来调查终身繁殖成功和其他问题的人口和社会生物学的普通燕鸥,例如在上述监测了几十年的殖民地。
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引用次数: 4
期刊
Open Ornithology Journal
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