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2012 IEEE 2nd Portuguese Meeting in Bioengineering (ENBENG)最新文献

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Molecular determinants of virus-like nanoparticle assembly in vitro and in animal cell culture 体外和动物细胞培养中病毒样纳米颗粒组装的分子决定因素
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331354
S. S. Soares, L. Pedro, G. Ferreira
Protein nanoparticles, such as virus-like particles (VLPs), consist only of the virus shell without any viral genetic information packaged inside. Similarly to viruses, the structural proteins that comprise a VLP can spontaneously self-assemble to form the particle or can assemble through several intermediate steps. This work addresses the characterization, manipulation and purification of a chimeric simian-human immunodeficiency VLP constructed by fusion of SIV matrix protein (p17) and HIV-1 p6 accessory protein. This fusion protein assembles as spherical nanoparticles of about 80 nm in diameter that are released to the culture media when expressed in HEK 293T cells. A simple two-step purification process was used to purify these nanoparticles. Also, different approaches - multiple-transfections or chemical coupling - were performed to target manipulation. Finally, a new approach for the production of these virus-like particles is described where the structural protein subunits are used and their assembly is promoted in vitro.
蛋白质纳米颗粒,如病毒样颗粒(vlp),仅由病毒外壳组成,内部没有包装任何病毒遗传信息。与病毒类似,构成VLP的结构蛋白可以自发地自组装形成颗粒,也可以通过几个中间步骤进行组装。本研究通过SIV基质蛋白(p17)和HIV-1 p6辅助蛋白的融合构建了嵌合猿人免疫缺陷VLP的表征、操作和纯化。这种融合蛋白组装成直径约80纳米的球形纳米颗粒,在HEK 293T细胞中表达后释放到培养基中。采用简单的两步纯化工艺纯化这些纳米颗粒。此外,不同的方法-多次转染或化学偶联-进行靶操作。最后,描述了一种生产这些病毒样颗粒的新方法,其中使用结构蛋白亚基并在体外促进其组装。
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引用次数: 0
Modelling, monitoring and control of plasmid bioproduction in Escherichia coli cultures 大肠杆菌培养中质粒生物生产的建模、监测和控制
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331370
M. Lopes, T. Scholtz, D. Silva, I. Santos, T. Silva, P. Sampaio, Ricardo M. Couto, V. V. Lopes, C. Calado
An integrated approach for modelling, monitoring and control the plasmid bioproduction in Escherichia coli cultures is presented. In a first stage, by the implementation of a kinetic model for E. coli cultures, a better bioprocess understanding was reached, concerning the availability of nutrients and products along the bioprocess, and their effects on the plasmid production. Results presented may provide significant help for future modelling and monitoring implementation. In a second stage, FTIR spectroscopy coupled with chemometrics, namely PLS regression, shows its potential as a high-throughput technique for simultaneously estimating the key variables involved in the plasmid production process by E. coli cultures run under distinct conditions. Finally, owing to online monitoring and process control, an NIR fibre optic probe and chemometrics provided promising results concerning the control of biomass and carbon sources in E. coli cultures.
提出了一种模拟、监测和控制大肠杆菌培养中质粒生物生产的综合方法。在第一阶段,通过实施大肠杆菌培养动力学模型,对生物过程有了更好的了解,包括生物过程中营养物质和产物的可用性,以及它们对质粒生产的影响。所提出的结果可能为未来的建模和监测实施提供重要的帮助。在第二阶段,FTIR光谱与化学计量学相结合,即PLS回归,显示了其作为一种高通量技术的潜力,可以同时估计在不同条件下大肠杆菌培养质粒生产过程中涉及的关键变量。最后,由于在线监测和过程控制,近红外光纤探针和化学计量学在控制大肠杆菌培养物的生物量和碳源方面提供了有希望的结果。
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引用次数: 3
Hemodynamic parameters assessment 血流动力学参数评估
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331379
V. Almeida, L. R. Ferreira, C. Correia
The present work focuses an experimental and theoretical approach to non-invasive cardiovascular (CV) system monitoring. The CV diseases are currently one of the leading causes of death in the developed countries. The development of early diagnostic tools contributes for the early identification of important markers in the CV development. A piezoelectric (PZ) probe to arterial pressure waveform (APW) monitoring at peripheral arteries, such as carotid artery was developed. A dedicated test bench capable of emulating the main CV dynamic properties was developed, providing an interesting tool to carry out the preliminary tests. The PZ probe output signal suffers additional processing to original waveform recovering. The deconvolution method was used for this purpose. Algorithms to waveform delineation were developed, based on the wavelet transform and probability density function (PDF). The AIx was calculated for each one of the developed algorithms. These methods were comparatively evaluated with the reference value from the synthesis procedure. The probe's performance was assessed using realistic simulation based on exponential pulses and in in vivo data acquisitions, Results demonstrate that the developed probe exhibits a good performance with maximum errors less than 0.5% in the AIx determination.
目前的工作重点是实验和理论方法的无创心血管(CV)系统监测。心血管疾病是目前发达国家主要的死亡原因之一。早期诊断工具的发展有助于早期识别CV发展中的重要标志物。研制了一种用于外周动脉(如颈动脉)血压波形监测的压电探针。开发了一个能够模拟CV主要动态特性的专用试验台,为进行初步测试提供了一个有趣的工具。PZ探头输出信号对原始波形恢复进行额外处理。为此使用了反褶积方法。基于小波变换和概率密度函数(PDF),开发了波形描绘算法。为每个已开发的算法计算AIx。并与合成过程的参考值进行了比较评价。基于指数脉冲和体内数据采集的真实模拟对探针的性能进行了评估,结果表明,所开发的探针在AIx测定中表现出良好的性能,最大误差小于0.5%。
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引用次数: 0
Identification of performance-related EEG phenotypes for neurofeedback training 神经反馈训练中与表现相关的脑电图表型的鉴定
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331391
Daniela S. Ferreira, N. Dias
With aging the body and the brain undergoes several changes. One of these changes is the loss of neuroplasticity, which leads to the decrease of cognitive abilities. Hence the necessity of stopping or reversing these changes is of utmost importance to contemporary society. In the present work, using electroencephalogram and the Wisconsin card sorting test (WCST) we try to understand which are the performance-related EEG phenotypes. The test was applied to young and elderly subjects due to the expected cognitive deficits with increasing age. The results showed that parietal theta desynchronization and the increase of the inter-frontal and intra-hemispheric coherence was associated to the group of good performers in the WCST. The implementation of an algorithm for low-resolution brain electromagnetic tomography (LORETA) showed that the WCST is not a specific test of the pre-frontal cortex. The identified performance-related EEG features have potential application on neurofeedback training protocols intended to hinder age-related cognitive decline.
随着年龄的增长,身体和大脑会发生一些变化。其中一个变化是神经可塑性的丧失,这会导致认知能力的下降。因此,制止或扭转这些变化的必要性对当代社会至关重要。在本工作中,我们试图利用脑电图和威斯康星卡片分类测验(WCST)来了解哪些是与表现相关的脑电表型。该测试适用于年轻和老年受试者,因为预期随着年龄的增长认知缺陷。结果表明,在WCST中表现较好的组,其顶叶θ波去同步化、额叶间和半球内相干性增加有关。低分辨率脑电磁断层扫描(LORETA)算法的实现表明,WCST不是针对前额皮质的特定测试。已确定的与性能相关的脑电图特征在神经反馈训练方案中具有潜在的应用价值,旨在阻止与年龄相关的认知衰退。
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引用次数: 2
3D medical image reconstruction on Digital Breast Tomosynthesis 基于数字乳房断层合成的三维医学图像重建
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331397
Isabel Catarina Duarte, F. Janela
The present work aim to evaluate image reconstruction algorithms for Digital Breast Tomosynthesis. Simulated data was used to perform and assess the 3D reconstruction. The images were acquired in a Monte Carlo platform and using an analytical phantom. The reconstruction step was performed, implementing Filtered Back Projection (FBP), Maximum-Likelihood Expectation-Maximization (ML-EM) and Algebraic Reconstruction Technique (ART). Comparable results were obtained by the three algorithms. The FBP algorithm presented more blurring images than the ML-EM and ART algorithms. However, it was the one more capable to localize the structures on the 3D space, including the smallest details. The results of the 3D reconstruction allow the discrimination even of very small structures which could not be differentiated on the simple projections that result from the simulations. This indicates that the accuracy of Digital Breast Tomosynthesis can be better than the Mammography.
本工作旨在评估数字乳房断层合成的图像重建算法。模拟数据用于执行和评估三维重建。图像是在蒙特卡罗平台上使用分析模体获得的。重建步骤通过滤波后投影(FBP)、最大似然期望最大化(ML-EM)和代数重建技术(ART)进行。三种算法的结果具有可比性。FBP算法比ML-EM和ART算法呈现出更多的模糊图像。然而,它更有能力在3D空间中定位结构,包括最小的细节。三维重建的结果甚至可以区分非常小的结构,这些结构在模拟结果的简单投影上无法区分。这表明数字乳腺断层合成的准确性可以优于乳房x线摄影。
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引用次数: 2
An overview on the multiscale/multiframe reconstruction for Positron Emission Tomography 正电子发射断层扫描多尺度/多帧重建研究综述
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331345
L. Mendes, N. Ferreira, C. Comtat
An overview of the multiscale/multiframe (MS/MF) 3D reconstruction scheme for Positron Emission Tomograph is presented. Nowadays, in clinical applications the image is reconstructed using a single scale or grid, i.e., the dimensions of the reconstructed volume or the projection space binning do not change during the reconstruction process. MS/MF introduces the concept of time frame to the multiscale reconstruction proposed by Raheja et al. This approach can be used for the generation of images reconstructed in near real time using a suitable scale, taking full advantage of list-mode reconstruction techniques. The generation of image sequences at different spatial scales and times may be useful to optimize the acquisition protocols on the fly as well as to improve the results of the segmentation and classification algorithms.
综述了正电子发射层析成像的多尺度/多帧(MS/MF)三维重建方案。目前,在临床应用中,图像重构采用单一尺度或网格,即重构体的尺寸或投影空间分区在重构过程中不发生变化。MS/MF在Raheja等人提出的多尺度重建中引入了时间框架的概念。该方法可以充分利用列表模式重构技术,利用合适的尺度生成近乎实时的重构图像。不同空间尺度和时间的图像序列的生成有助于实时优化采集协议,并改善分割和分类算法的结果。
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引用次数: 1
Development of skills in children with ASD using a robotic platform 使用机器人平台发展自闭症儿童的技能
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331347
S. Silva, F. Soares, S. Costa, A. Pereira, F. Moreira
The interaction and communication skills are essential to live in society. However, individuals with autism spectrum disorders (ASD) have a gap in these abilities which affects their daily life. Previous studies suggest that children with ASD demonstrate some positive behaviors in presence of a robotic platform. This study intends to evaluate the effect of a robotic platform on children with ASD, checking if the platform can be a stimulating agent for children's interaction, as well as a skill learning promoter. So, it is used the robot Lego Mindstorms NXT as a mediator/reward to encourage children with ASD to interact with others and also to learn some cognitive skills.
互动和沟通技巧是生活在社会中必不可少的。然而,患有自闭症谱系障碍(ASD)的个体在这些能力方面存在差距,这影响了他们的日常生活。先前的研究表明,自闭症儿童在机器人平台面前表现出一些积极的行为。本研究旨在评估机器人平台对ASD儿童的影响,检查该平台是否可以作为儿童互动的刺激剂,以及技能学习的促进剂。因此,我们使用机器人Lego Mindstorms NXT作为中介/奖励来鼓励自闭症儿童与他人互动,并学习一些认知技能。
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引用次数: 12
Spectral analysis of laser Doppler flowmetry signals 激光多普勒流量测量信号的光谱分析
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331342
R. Campos, E. Figueiras, L. R. Ferreira, A. Humeau-Heurtier
A new multi-wavelength laser Doppler flowmeter prototype with different spaced detection optical fibres, built in order to give depth discrimination capabilities to laser Doppler flowmetry technique (LDF), was developed. The Fourier transform and the power spectral density of LDF signals measured by the laser Doppler flowmeter prototype were calculated in order to analyze the frequency oscillations present in human microcirculatory blood flow and to explore the potential of the prototype for blood flood skin depth discrimination. The spectral dependence of the signals was also calculated using the coherence function. Our results show that perfusion signals from the new prototype present marked differences when wavelengths and fibre separations are modified; these results are found both at rest and during perturbations of local blood flow. These findings support our hypothesis that wide probes and higher wavelengths measure blood flux from deeper layers.
为了使激光多普勒流量测量技术(LDF)具有深度识别能力,研制了一种新型多波长激光多普勒流量测量样机。为了分析人体微循环血流中存在的频率振荡,探讨该激光多普勒流量计样机对LDF信号的傅里叶变换和功率谱密度进行计算,并探讨该样机对血流皮肤深度判别的潜力。利用相干函数计算了信号的谱依赖关系。我们的研究结果表明,当波长和纤维分离度改变时,新原型的灌注信号有明显的差异;这些结果在静止和局部血流扰动时均可发现。这些发现支持了我们的假设,即宽探头和更高波长测量更深层次的血流量。
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引用次数: 6
Delivery of biomolecules by functionalized inorganic nanoparticles 功能化无机纳米颗粒递送生物分子
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331365
S. Coelho, M. C. Pereira, S. Rocha, M. Coelho
Design and testing drug delivery systems using biodegradable and biocompatible colloidal carriers made of functionalized gold nanoparticles are the vectors of this project. The systems will be tested in therapy strategies for cancer. The main objective is to develop nanoparticles that increase radiation absorption in diseased areas and minimize damage to normal surrounding tissues. Such enhancement of radiation will benefit cancer patients by decreasing radiation dose and reducing side effects. Secondary objectives include investigating radiosensitizing potential of gold nanoparticles and selecting most efficient system plus combining nanoparticle-enhanced radiotherapy with anti cancer drugs. The project will contribute to advancing promising delivery systems that can be activated remotely by sensitizing them for light/radiation.
设计和测试使用由功能化金纳米颗粒制成的可生物降解和生物相容性胶体载体的药物输送系统是本项目的载体。该系统将在癌症治疗策略中进行测试。主要目标是开发纳米粒子,增加患病区域的辐射吸收,并尽量减少对周围正常组织的损害。这种增强辐射可以减少辐射剂量,减少副作用,从而使癌症患者受益。次要目标包括研究金纳米粒子的放射增敏潜力,选择最有效的系统以及纳米粒子增强放疗与抗癌药物的结合。该项目将有助于推进有前途的交付系统,这些系统可以通过对光/辐射的敏感来远程激活。
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引用次数: 0
Separation of cephalosporins using ionic and neutral polimeric resins 离子和中性聚合物树脂分离头孢菌素
Pub Date : 2012-10-18 DOI: 10.1109/ENBENG.2012.6331353
L. M. De Oliveira, M. Barboza
In this paper, cephamycin C purification using column adsorption processes was investigated. Two polymeric resins were used, Q-Sepharose XL, an ionic resin, and Amberlite XAD-4, a neutral one. The column process using QXL separated two fractions with antibacterial activity. Cephamycin C was present only in the first fraction, called F1, but was not pure. In the column process using the resin XAD-4, it was not observed any separation of different compounds when the feed was the ultrafiltered broth. Nevertheless, the system was able to separate two fractions when the feed was the fraction F1. When cephalosporin C was added to F1, the column with XAD-4 also separated cephamycin C from cephalosporin C.
本文对柱吸附法纯化头孢霉素C进行了研究。使用了两种聚合物树脂,离子树脂Q-Sepharose XL和中性树脂Amberlite XAD-4。采用QXL柱法分离出具有抑菌活性的两个馏分。头霉素C只存在于第一部分,称为F1,但不是纯的。在采用树脂XAD-4的柱化过程中,当进料为超滤肉汤时,未观察到任何不同化合物的分离。然而,当进料为分数F1时,系统能够分离两个分数。将头孢菌素C加入F1后,XAD-4柱也将头孢菌素C从头孢菌素C中分离出来。
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引用次数: 0
期刊
2012 IEEE 2nd Portuguese Meeting in Bioengineering (ENBENG)
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