Pub Date : 2020-04-01eCollection Date: 2020-01-01DOI: 10.1155/2020/9239753
Inayatullah S Sayed, Siti S Ismail
In single photon emission computed tomography (SPECT) imaging, the choice of a suitable filter and its parameters for noise reduction purposes is a big challenge. Adverse effects on image quality arise if an improper filter is selected. Filtered back projection (FBP) is the most popular technique for image reconstruction in SPECT. With this technique, different types of reconstruction filters are used, such as the Butterworth and the Hamming. In this study, the effects on the quality of reconstructed images of the Butterworth filter were compared with the ones of the Hamming filter. A Philips ADAC forte gamma camera was used. A low-energy, high-resolution collimator was installed on the gamma camera. SPECT data were acquired by scanning a phantom with an insert composed of hot and cold regions. A Technetium-99m radioactive solution was homogenously mixed into the phantom. Furthermore, a symmetrical energy window (20%) centered at 140 keV was adjusted. Images were reconstructed by the FBP method. Various cutoff frequency values, namely, 0.35, 0.40, 0.45, and 0.50 cycles/cm, were selected for both filters, whereas for the Butterworth filter, the order was set at 7. Images of hot and cold regions were analyzed in terms of detectability, contrast, and signal-to-noise ratio (SNR). The findings of our study indicate that the Butterworth filter was able to expose more hot and cold regions in reconstructed images. In addition, higher contrast values were recorded, as compared to the Hamming filter. However, with the Butterworth filter, the decrease in SNR for both types of regions with the increase in cutoff frequency as compared to the Hamming filter was obtained. Overall, the Butterworth filter under investigation provided superior results than the Hamming filter. Effects of both filters on the quality of hot and cold region images varied with the change in cutoff frequency.
{"title":"Comparison of Low-Pass Filters for SPECT Imaging.","authors":"Inayatullah S Sayed, Siti S Ismail","doi":"10.1155/2020/9239753","DOIUrl":"https://doi.org/10.1155/2020/9239753","url":null,"abstract":"<p><p>In single photon emission computed tomography (SPECT) imaging, the choice of a suitable filter and its parameters for noise reduction purposes is a big challenge. Adverse effects on image quality arise if an improper filter is selected. Filtered back projection (FBP) is the most popular technique for image reconstruction in SPECT. With this technique, different types of reconstruction filters are used, such as the Butterworth and the Hamming. In this study, the effects on the quality of reconstructed images of the Butterworth filter were compared with the ones of the Hamming filter. A Philips ADAC forte gamma camera was used. A low-energy, high-resolution collimator was installed on the gamma camera. SPECT data were acquired by scanning a phantom with an insert composed of hot and cold regions. A Technetium-99m radioactive solution was homogenously mixed into the phantom. Furthermore, a symmetrical energy window (20%) centered at 140 keV was adjusted. Images were reconstructed by the FBP method. Various cutoff frequency values, namely, 0.35, 0.40, 0.45, and 0.50 cycles/cm, were selected for both filters, whereas for the Butterworth filter, the order was set at 7. Images of hot and cold regions were analyzed in terms of detectability, contrast, and signal-to-noise ratio (SNR). The findings of our study indicate that the Butterworth filter was able to expose more hot and cold regions in reconstructed images. In addition, higher contrast values were recorded, as compared to the Hamming filter. However, with the Butterworth filter, the decrease in SNR for both types of regions with the increase in cutoff frequency as compared to the Hamming filter was obtained. Overall, the Butterworth filter under investigation provided superior results than the Hamming filter. Effects of both filters on the quality of hot and cold region images varied with the change in cutoff frequency.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2020 ","pages":"9239753"},"PeriodicalIF":7.6,"publicationDate":"2020-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2020/9239753","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37849424","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Bone age assessment (BAA) is an essential topic in the clinical practice of evaluating the biological maturity of children. Because the manual method is time-consuming and prone to observer variability, it is attractive to develop computer-aided and automated methods for BAA. In this paper, we present a fully automatic BAA method. To eliminate noise in a raw X-ray image, we start with using U-Net to precisely segment hand mask image from a raw X-ray image. Even though U-Net can perform the segmentation with high precision, it needs a bigger annotated dataset. To alleviate the annotation burden, we propose to use deep active learning (AL) to select unlabeled data samples with sufficient information intentionally. These samples are given to Oracle for annotation. After that, they are then used for subsequential training. In the beginning, only 300 data are manually annotated and then the improved U-Net within the AL framework can robustly segment all the 12611 images in RSNA dataset. The AL segmentation model achieved a Dice score at 0.95 in the annotated testing set. To optimize the learning process, we employ six off-the-shell deep Convolutional Neural Networks (CNNs) with pretrained weights on ImageNet. We use them to extract features of preprocessed hand images with a transfer learning technique. In the end, a variety of ensemble regression algorithms are applied to perform BAA. Besides, we choose a specific CNN to extract features and explain why we select that CNN. Experimental results show that the proposed approach achieved discrepancy between manual and predicted bone age of about 6.96 and 7.35 months for male and female cohorts, respectively, on the RSNA dataset. These accuracies are comparable to state-of-the-art performance.
骨龄评估(BAA)是评估儿童生物学成熟度的重要课题。由于手工方法耗时长,且易受观测者变化的影响,因此开发BAA的计算机辅助和自动化方法是很有吸引力的。本文提出了一种全自动BAA方法。为了消除原始x射线图像中的噪声,我们首先使用U-Net从原始x射线图像中精确分割手掩膜图像。尽管U-Net可以实现高精度的分割,但它需要更大的标注数据集。为了减轻标注负担,我们建议使用深度主动学习(deep active learning, AL)来有意地选择具有足够信息的未标记数据样本。这些示例提供给Oracle进行注释。之后,它们被用于后续的训练。最初,只有300张数据需要手工标注,然后在人工智能框架下改进的U-Net可以鲁棒分割RSNA数据集中的所有12611张图像。人工智能分割模型在标注测试集中的Dice得分为0.95。为了优化学习过程,我们在ImageNet上使用了六个具有预训练权值的现成深度卷积神经网络(cnn)。我们使用迁移学习技术提取预处理手图像的特征。最后,应用了多种集成回归算法来执行BAA。此外,我们选择一个特定的CNN来提取特征,并解释为什么我们选择该CNN。实验结果表明,该方法在RSNA数据集上实现了男性和女性队列的人工骨龄和预测骨龄分别约为6.96个月和7.35个月的差异。这些精度可与最先进的性能相媲美。
{"title":"Fully Automated Bone Age Assessment on Large-Scale Hand X-Ray Dataset.","authors":"Xiaoying Pan, Yizhe Zhao, Hao Chen, De Wei, Chen Zhao, Zhi Wei","doi":"10.1155/2020/8460493","DOIUrl":"https://doi.org/10.1155/2020/8460493","url":null,"abstract":"<p><p>Bone age assessment (BAA) is an essential topic in the clinical practice of evaluating the biological maturity of children. Because the manual method is time-consuming and prone to observer variability, it is attractive to develop computer-aided and automated methods for BAA. In this paper, we present a fully automatic BAA method. To eliminate noise in a raw X-ray image, we start with using U-Net to precisely segment hand mask image from a raw X-ray image. Even though U-Net can perform the segmentation with high precision, it needs a bigger annotated dataset. To alleviate the annotation burden, we propose to use deep active learning (AL) to select unlabeled data samples with sufficient information intentionally. These samples are given to Oracle for annotation. After that, they are then used for subsequential training. In the beginning, only 300 data are manually annotated and then the improved U-Net within the AL framework can robustly segment all the 12611 images in RSNA dataset. The AL segmentation model achieved a Dice score at 0.95 in the annotated testing set. To optimize the learning process, we employ six off-the-shell deep Convolutional Neural Networks (CNNs) with pretrained weights on ImageNet. We use them to extract features of preprocessed hand images with a transfer learning technique. In the end, a variety of ensemble regression algorithms are applied to perform BAA. Besides, we choose a specific CNN to extract features and explain why we select that CNN. Experimental results show that the proposed approach achieved discrepancy between manual and predicted bone age of about 6.96 and 7.35 months for male and female cohorts, respectively, on the RSNA dataset. These accuracies are comparable to state-of-the-art performance.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2020 ","pages":"8460493"},"PeriodicalIF":7.6,"publicationDate":"2020-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2020/8460493","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37752031","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-02-06eCollection Date: 2020-01-01DOI: 10.1155/2020/7862089
Sarah E Shelton, Jodi Stone, Fei Gao, Donglin Zeng, Paul A Dayton
The purpose of this study is to determine if microvascular tortuosity can be used as an imaging biomarker for the presence of tumor-associated angiogenesis and if imaging this biomarker can be used as a specific and sensitive method of locating solid tumors. Acoustic angiography, an ultrasound-based microvascular imaging technology, was used to visualize angiogenesis development of a spontaneous mouse model of breast cancer (n = 48). A reader study was used to assess visual discrimination between image types, and quantitative methods utilized metrics of tortuosity and spatial clustering for tumor detection. The reader study resulted in an area under the curve of 0.8, while the clustering approach resulted in the best classification with an area under the curve of 0.95. Both the qualitative and quantitative methods produced a correlation between sensitivity and tumor diameter. Imaging of vascular geometry with acoustic angiography provides a robust method for discriminating between tumor and healthy tissue in a mouse model of breast cancer. Multiple methods of analysis have been presented for a wide range of tumor sizes. Application of these techniques to clinical imaging could improve breast cancer diagnosis, as well as improve specificity in assessing cancer in other tissues. The clustering approach may be beneficial for other types of morphological analysis beyond vascular ultrasound images.
{"title":"Microvascular Ultrasonic Imaging of Angiogenesis Identifies Tumors in a Murine Spontaneous Breast Cancer Model.","authors":"Sarah E Shelton, Jodi Stone, Fei Gao, Donglin Zeng, Paul A Dayton","doi":"10.1155/2020/7862089","DOIUrl":"https://doi.org/10.1155/2020/7862089","url":null,"abstract":"<p><p>The purpose of this study is to determine if microvascular tortuosity can be used as an imaging biomarker for the presence of tumor-associated angiogenesis and if imaging this biomarker can be used as a specific and sensitive method of locating solid tumors. Acoustic angiography, an ultrasound-based microvascular imaging technology, was used to visualize angiogenesis development of a spontaneous mouse model of breast cancer (<i>n</i> = 48). A reader study was used to assess visual discrimination between image types, and quantitative methods utilized metrics of tortuosity and spatial clustering for tumor detection. The reader study resulted in an area under the curve of 0.8, while the clustering approach resulted in the best classification with an area under the curve of 0.95. Both the qualitative and quantitative methods produced a correlation between sensitivity and tumor diameter. Imaging of vascular geometry with acoustic angiography provides a robust method for discriminating between tumor and healthy tissue in a mouse model of breast cancer. Multiple methods of analysis have been presented for a wide range of tumor sizes. Application of these techniques to clinical imaging could improve breast cancer diagnosis, as well as improve specificity in assessing cancer in other tissues. The clustering approach may be beneficial for other types of morphological analysis beyond vascular ultrasound images.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2020 ","pages":"7862089"},"PeriodicalIF":7.6,"publicationDate":"2020-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2020/7862089","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37670230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-01-06eCollection Date: 2020-01-01DOI: 10.1155/2020/9035096
Mohamed Nasor, Walid Obaid
Brain tumors are a major health problem that affect the lives of many people. These tumors are classified as benign or cancerous. The latter can be fatal if not properly diagnosed and treated. Therefore, the diagnosis of brain tumors at the early stages of their development can significantly improve the chances of patient's full recovery after treatment. In addition to laboratory analyses, clinicians and surgeons extract information from medical images, recorded by various systems such as magnetic resonance imaging (MRI), X-ray, and computed tomography (CT). The extracted information is used to identify the essential characteristics of brain tumors (location, size, and type) in order to achieve an accurate diagnosis to determine the most appropriate treatment protocol. In this paper, we present an automated machine vision technique for the detection and localization of brain tumors in MRI images at their very early stages using a combination of k-means clustering, patch-based image processing, object counting, and tumor evaluation. The technique was tested on twenty real MRI images and was found to be capable of detecting multiple tumors in MRI images regardless of their intensity level variations, size, and location including those with very small sizes. In addition to its use for diagnosis, the technique can be integrated into automated treatment instruments and robotic surgery systems.
{"title":"Detection and Localization of Early-Stage Multiple Brain Tumors Using a Hybrid Technique of Patch-Based Processing, k-means Clustering and Object Counting.","authors":"Mohamed Nasor, Walid Obaid","doi":"10.1155/2020/9035096","DOIUrl":"https://doi.org/10.1155/2020/9035096","url":null,"abstract":"<p><p>Brain tumors are a major health problem that affect the lives of many people. These tumors are classified as benign or cancerous. The latter can be fatal if not properly diagnosed and treated. Therefore, the diagnosis of brain tumors at the early stages of their development can significantly improve the chances of patient's full recovery after treatment. In addition to laboratory analyses, clinicians and surgeons extract information from medical images, recorded by various systems such as magnetic resonance imaging (MRI), X-ray, and computed tomography (CT). The extracted information is used to identify the essential characteristics of brain tumors (location, size, and type) in order to achieve an accurate diagnosis to determine the most appropriate treatment protocol. In this paper, we present an automated machine vision technique for the detection and localization of brain tumors in MRI images at their very early stages using a combination of <i>k</i>-means clustering, patch-based image processing, object counting, and tumor evaluation. The technique was tested on twenty real MRI images and was found to be capable of detecting multiple tumors in MRI images regardless of their intensity level variations, size, and location including those with very small sizes. In addition to its use for diagnosis, the technique can be integrated into automated treatment instruments and robotic surgery systems.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2020 ","pages":"9035096"},"PeriodicalIF":7.6,"publicationDate":"2020-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2020/9035096","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38010019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
[This corrects the article DOI: 10.1155/2017/6028645.].
[这更正了文章DOI: 10.1155/2017/6028645]。
{"title":"Corrigendum to “Intraoperative Imaging Modalities and Compensation for Brain Shift in Tumor Resection Surgery”","authors":"Siming Bayer, A. Maier, M. Ostermeier, R. Fahrig","doi":"10.1155/2019/9249016","DOIUrl":"https://doi.org/10.1155/2019/9249016","url":null,"abstract":"[This corrects the article DOI: 10.1155/2017/6028645.].","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":""},"PeriodicalIF":7.6,"publicationDate":"2019-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2019/9249016","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48243249","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mario Amrehn, S. Steidl, Reinier Kortekaas, Maddalena Strumia, M. Weingarten, M. Kowarschik, A. Maier
For complex segmentation tasks, the achievable accuracy of fully automated systems is inherently limited. Specifically, when a precise segmentation result is desired for a small amount of given data sets, semi-automatic methods exhibit a clear benefit for the user. The optimization of human computer interaction (HCI) is an essential part of interactive image segmentation. Nevertheless, publications introducing novel interactive segmentation systems (ISS) often lack an objective comparison of HCI aspects. It is demonstrated that even when the underlying segmentation algorithm is the same throughout interactive prototypes, their user experience may vary substantially. As a result, users prefer simple interfaces as well as a considerable degree of freedom to control each iterative step of the segmentation. In this article, an objective method for the comparison of ISS is proposed, based on extensive user studies. A summative qualitative content analysis is conducted via abstraction of visual and verbal feedback given by the participants. A direct assessment of the segmentation system is executed by the users via the system usability scale (SUS) and AttrakDiff-2 questionnaires. Furthermore, an approximation of the findings regarding usability aspects in those studies is introduced, conducted solely from the system-measurable user actions during their usage of interactive segmentation prototypes. The prediction of all questionnaire results has an average relative error of 8.9%, which is close to the expected precision of the questionnaire results themselves. This automated evaluation scheme may significantly reduce the resources necessary to investigate each variation of a prototype's user interface (UI) features and segmentation methodologies.
{"title":"A Semi-Automated Usability Evaluation Framework for Interactive Image Segmentation Systems","authors":"Mario Amrehn, S. Steidl, Reinier Kortekaas, Maddalena Strumia, M. Weingarten, M. Kowarschik, A. Maier","doi":"10.1155/2019/1464592","DOIUrl":"https://doi.org/10.1155/2019/1464592","url":null,"abstract":"For complex segmentation tasks, the achievable accuracy of fully automated systems is inherently limited. Specifically, when a precise segmentation result is desired for a small amount of given data sets, semi-automatic methods exhibit a clear benefit for the user. The optimization of human computer interaction (HCI) is an essential part of interactive image segmentation. Nevertheless, publications introducing novel interactive segmentation systems (ISS) often lack an objective comparison of HCI aspects. It is demonstrated that even when the underlying segmentation algorithm is the same throughout interactive prototypes, their user experience may vary substantially. As a result, users prefer simple interfaces as well as a considerable degree of freedom to control each iterative step of the segmentation. In this article, an objective method for the comparison of ISS is proposed, based on extensive user studies. A summative qualitative content analysis is conducted via abstraction of visual and verbal feedback given by the participants. A direct assessment of the segmentation system is executed by the users via the system usability scale (SUS) and AttrakDiff-2 questionnaires. Furthermore, an approximation of the findings regarding usability aspects in those studies is introduced, conducted solely from the system-measurable user actions during their usage of interactive segmentation prototypes. The prediction of all questionnaire results has an average relative error of 8.9%, which is close to the expected precision of the questionnaire results themselves. This automated evaluation scheme may significantly reduce the resources necessary to investigate each variation of a prototype's user interface (UI) features and segmentation methodologies.","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2019 1","pages":""},"PeriodicalIF":7.6,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2019/1464592","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47847902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Identification of early ischemic changes (EIC) on noncontrast head CT scans performed within the first few hours of stroke onset may have important implications for subsequent treatment, though early stroke is poorly delimited on these studies. Lack of sharp lesion boundary delineation in early infarcts precludes manual volume measures, as well as measures using edge-detection or region-filling algorithms. We wished to test a hypothesis that image intensity inhomogeneity correction may provide a sensitive method for identifying the subtle regional hypodensity which is characteristic of early ischemic infarcts. A digital image analysis algorithm was developed using image intensity inhomogeneity correction (IIC) and intensity thresholding. Two different IIC algorithms (FSL and ITK) were compared. The method was evaluated using simulated infarcts and clinical cases. For synthetic infarcts, measured infarct volumes demonstrated strong correlation to the true lesion volume (for 20% decreased density “infarcts,” Pearson r = 0.998 for both algorithms); both algorithms demonstrated improved accuracy with increasing lesion size and decreasing lesion density. In clinical cases (41 acute infarcts in 30 patients), calculated infarct volumes using FSL IIC correlated with the ASPECTS scores (Pearson r = 0.680) and the admission NIHSS (Pearson r = 0.544). Calculated infarct volumes were highly correlated with the clinical decision to treat with IV-tPA. Image intensity inhomogeneity correction, when applied to noncontrast head CT, provides a tool for image analysis to aid in detection of EIC, as well as to evaluate and guide improvements in scan quality for optimal detection of EIC.
{"title":"Automated Estimation of Acute Infarct Volume from Noncontrast Head CT Using Image Intensity Inhomogeneity Correction","authors":"K. Cauley, G. Mongelluzzo, S. Fielden","doi":"10.1155/2019/1720270","DOIUrl":"https://doi.org/10.1155/2019/1720270","url":null,"abstract":"Identification of early ischemic changes (EIC) on noncontrast head CT scans performed within the first few hours of stroke onset may have important implications for subsequent treatment, though early stroke is poorly delimited on these studies. Lack of sharp lesion boundary delineation in early infarcts precludes manual volume measures, as well as measures using edge-detection or region-filling algorithms. We wished to test a hypothesis that image intensity inhomogeneity correction may provide a sensitive method for identifying the subtle regional hypodensity which is characteristic of early ischemic infarcts. A digital image analysis algorithm was developed using image intensity inhomogeneity correction (IIC) and intensity thresholding. Two different IIC algorithms (FSL and ITK) were compared. The method was evaluated using simulated infarcts and clinical cases. For synthetic infarcts, measured infarct volumes demonstrated strong correlation to the true lesion volume (for 20% decreased density “infarcts,” Pearson r = 0.998 for both algorithms); both algorithms demonstrated improved accuracy with increasing lesion size and decreasing lesion density. In clinical cases (41 acute infarcts in 30 patients), calculated infarct volumes using FSL IIC correlated with the ASPECTS scores (Pearson r = 0.680) and the admission NIHSS (Pearson r = 0.544). Calculated infarct volumes were highly correlated with the clinical decision to treat with IV-tPA. Image intensity inhomogeneity correction, when applied to noncontrast head CT, provides a tool for image analysis to aid in detection of EIC, as well as to evaluate and guide improvements in scan quality for optimal detection of EIC.","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":""},"PeriodicalIF":7.6,"publicationDate":"2019-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2019/1720270","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48989856","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Devkumar Mustafi, Abby Leinroth, Xiaobing Fan, Erica Markiewicz, Marta Zamora, Jeffrey Mueller, Suzanne D Conzen, Gregory S Karczmar
Breast cancer is a major cause of morbidity and mortality in Western women. Tumor neoangiogenesis, the formation of new blood vessels from pre-existing ones, may be used as a prognostic marker for cancer progression. Clinical practice uses dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) to detect cancers based on increased blood flow and capillary permeability. However, DCE-MRI requires repeated injections of contrast media. Therefore we explored the use of noninvasive time-of-flight (TOF) MR angiography for serial studies of mouse mammary glands to measure the number and size of arteries feeding mammary glands with and without cancer. Virgin female C3(1) SV40 TAg mice (n=9), aged 18-20 weeks, were imaged on a 9.4 Tesla small animal scanner. Multislice T2-weighted (T2W) images and TOF-MRI angiograms were acquired over inguinal mouse mammary glands. The data were analyzed to determine tumor burden in each mammary gland and the volume of arteries feeding each mammary gland. After in vivo MRI, inguinal mammary glands were excised and fixed in formalin for histology. TOF angiography detected arteries with a diameter as small as 0.1 mm feeding the mammary glands. A significant correlation (r=0.79; p< 0.0001) was found between tumor volume and the arterial blood volume measured in mammary glands. Mammary arterial blood volumes ranging from 0.08 mm3 to 3.81 mm3 were measured. Tumors and blood vessels found on in vivo T2W and TOF images, respectively, were confirmed with ex vivo histological images. These results demonstrate increased recruitment of arteries to mammary glands with cancer, likely associated with neoangiogenesis. Neoangiogenesis may be detected by TOF angiography without injection of contrast agents. This would be very useful in mouse models where repeat placement of I.V. lines is challenging. In addition, analogous methods could be tested in humans to evaluate the vasculature of suspicious lesions without using contrast agents.
{"title":"Magnetic Resonance Angiography Shows Increased Arterial Blood Supply Associated with Murine Mammary Cancer.","authors":"Devkumar Mustafi, Abby Leinroth, Xiaobing Fan, Erica Markiewicz, Marta Zamora, Jeffrey Mueller, Suzanne D Conzen, Gregory S Karczmar","doi":"10.1155/2019/5987425","DOIUrl":"https://doi.org/10.1155/2019/5987425","url":null,"abstract":"Breast cancer is a major cause of morbidity and mortality in Western women. Tumor neoangiogenesis, the formation of new blood vessels from pre-existing ones, may be used as a prognostic marker for cancer progression. Clinical practice uses dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) to detect cancers based on increased blood flow and capillary permeability. However, DCE-MRI requires repeated injections of contrast media. Therefore we explored the use of noninvasive time-of-flight (TOF) MR angiography for serial studies of mouse mammary glands to measure the number and size of arteries feeding mammary glands with and without cancer. Virgin female C3(1) SV40 TAg mice (n=9), aged 18-20 weeks, were imaged on a 9.4 Tesla small animal scanner. Multislice T2-weighted (T2W) images and TOF-MRI angiograms were acquired over inguinal mouse mammary glands. The data were analyzed to determine tumor burden in each mammary gland and the volume of arteries feeding each mammary gland. After in vivo MRI, inguinal mammary glands were excised and fixed in formalin for histology. TOF angiography detected arteries with a diameter as small as 0.1 mm feeding the mammary glands. A significant correlation (r=0.79; p< 0.0001) was found between tumor volume and the arterial blood volume measured in mammary glands. Mammary arterial blood volumes ranging from 0.08 mm3 to 3.81 mm3 were measured. Tumors and blood vessels found on in vivo T2W and TOF images, respectively, were confirmed with ex vivo histological images. These results demonstrate increased recruitment of arteries to mammary glands with cancer, likely associated with neoangiogenesis. Neoangiogenesis may be detected by TOF angiography without injection of contrast agents. This would be very useful in mouse models where repeat placement of I.V. lines is challenging. In addition, analogous methods could be tested in humans to evaluate the vasculature of suspicious lesions without using contrast agents.","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2019 ","pages":"5987425"},"PeriodicalIF":7.6,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2019/5987425","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10679678","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-10-18eCollection Date: 2018-01-01DOI: 10.1155/2018/9752638
S K Chaya Devi, T Satya Savithri
Lung cancer is one of the major types of cancer in the world. Survival rate can be increased if the disease can be identified early. Posterior and anterior chest radiography and computerized tomography scans are the most used diagnosis techniques for detecting tumor from lungs. Posterior and anterior chest radiography requires less radiation dose and is available in most of the diagnostic centers and it costs less compared to the remaining diagnosis techniques. So PA chest radiography became the most commonly used technique for lung cancer detection. Because of superimposed anatomical structures present in the image, sometimes radiologists cannot find abnormalities from the image. To help radiologists in diagnosing tumor from PA chest radiographic images range of CAD scheme has been developed for the past three decades. These computerized tools may be used by radiologists as a second opinion in detecting tumor. Literature survey on detecting tumors from chest graphs is presented in this paper.
{"title":"Review: On Segmentation of Nodules from Posterior and Anterior Chest Radiographs.","authors":"S K Chaya Devi, T Satya Savithri","doi":"10.1155/2018/9752638","DOIUrl":"https://doi.org/10.1155/2018/9752638","url":null,"abstract":"<p><p>Lung cancer is one of the major types of cancer in the world. Survival rate can be increased if the disease can be identified early. Posterior and anterior chest radiography and computerized tomography scans are the most used diagnosis techniques for detecting tumor from lungs. Posterior and anterior chest radiography requires less radiation dose and is available in most of the diagnostic centers and it costs less compared to the remaining diagnosis techniques. So PA chest radiography became the most commonly used technique for lung cancer detection. Because of superimposed anatomical structures present in the image, sometimes radiologists cannot find abnormalities from the image. To help radiologists in diagnosing tumor from PA chest radiographic images range of CAD scheme has been developed for the past three decades. These computerized tools may be used by radiologists as a second opinion in detecting tumor. Literature survey on detecting tumors from chest graphs is presented in this paper.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2018 ","pages":"9752638"},"PeriodicalIF":7.6,"publicationDate":"2018-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2018/9752638","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36781771","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-09-10eCollection Date: 2018-01-01DOI: 10.1155/2018/5812872
Ahmed I Sharaf, Mohamed Abu El-Soud, Ibrahim M El-Henawy
Detection of epileptic seizures using an electroencephalogram (EEG) signals is a challenging task that requires a high level of skilled neurophysiologists. Therefore, computer-aided detection provides an asset to the neurophysiologist in interpreting the EEG. This paper introduces a novel approach to recognize and classify the epileptic seizure and seizure-free EEG signals automatically by an intelligent computer-aided method. Moreover, the prediction of the preictal phase of the epilepsy is proposed to assist the neurophysiologist in the clinic. The proposed method presents two perspectives for the EEG signal processing to detect and classify the seizures and seizure-free signals. The first perspectives consider the EEG signal as a nonlinear time series. A tunable Q-wavelet is applied to decompose the signal into smaller segments called subbands. Then a chaotic, statistical, and power spectrum features sets are extracted from each subband. The second perspectives process the EEG signal as an image; hence the gray-level co-occurrence matrix is determined from the image to obtain the textures of contrast, correlation, energy, and homogeneity. Due to a large number of features obtained, a feature selection algorithm based on firefly optimization was applied. The firefly optimization reduces the original set of features and generates a reduced compact set. A random forest classifier is trained for the classification and prediction of the seizures and seizure-free signals. Afterward, a dataset from the University of Bonn, Germany, is used for benchmarking and evaluation. The proposed approach provided a significant result compared with other recent work regarding accuracy, recall, specificity, F-measure, and Matthew's correlation coefficient.
{"title":"An Automated Approach for Epilepsy Detection Based on Tunable <i>Q</i>-Wavelet and Firefly Feature Selection Algorithm.","authors":"Ahmed I Sharaf, Mohamed Abu El-Soud, Ibrahim M El-Henawy","doi":"10.1155/2018/5812872","DOIUrl":"https://doi.org/10.1155/2018/5812872","url":null,"abstract":"<p><p>Detection of epileptic seizures using an electroencephalogram (EEG) signals is a challenging task that requires a high level of skilled neurophysiologists. Therefore, computer-aided detection provides an asset to the neurophysiologist in interpreting the EEG. This paper introduces a novel approach to recognize and classify the epileptic seizure and seizure-free EEG signals automatically by an intelligent computer-aided method. Moreover, the prediction of the preictal phase of the epilepsy is proposed to assist the neurophysiologist in the clinic. The proposed method presents two perspectives for the EEG signal processing to detect and classify the seizures and seizure-free signals. The first perspectives consider the EEG signal as a nonlinear time series. A tunable <i>Q</i>-wavelet is applied to decompose the signal into smaller segments called subbands. Then a chaotic, statistical, and power spectrum features sets are extracted from each subband. The second perspectives process the EEG signal as an image; hence the gray-level co-occurrence matrix is determined from the image to obtain the textures of contrast, correlation, energy, and homogeneity. Due to a large number of features obtained, a feature selection algorithm based on firefly optimization was applied. The firefly optimization reduces the original set of features and generates a reduced compact set. A random forest classifier is trained for the classification and prediction of the seizures and seizure-free signals. Afterward, a dataset from the University of Bonn, Germany, is used for benchmarking and evaluation. The proposed approach provided a significant result compared with other recent work regarding accuracy, recall, specificity, F-measure, and Matthew's correlation coefficient.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2018 ","pages":"5812872"},"PeriodicalIF":7.6,"publicationDate":"2018-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2018/5812872","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36541471","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}