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Cryo-Imaging and Software Platform for Analysis of Molecular MR Imaging of Micrometastases. 冷冻成像及微转移瘤分子磁共振成像分析软件平台。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2018-04-01 eCollection Date: 2018-01-01 DOI: 10.1155/2018/9780349
Mohammed Q Qutaish, Zhuxian Zhou, David Prabhu, Yiqiao Liu, Mallory R Busso, Donna Izadnegahdar, Madhusudhana Gargesha, Hong Lu, Zheng-Rong Lu, David L Wilson

We created and evaluated a preclinical, multimodality imaging, and software platform to assess molecular imaging of small metastases. This included experimental methods (e.g., GFP-labeled tumor and high resolution multispectral cryo-imaging), nonrigid image registration, and interactive visualization of imaging agent targeting. We describe technological details earlier applied to GFP-labeled metastatic tumor targeting by molecular MR (CREKA-Gd) and red fluorescent (CREKA-Cy5) imaging agents. Optimized nonrigid cryo-MRI registration enabled nonambiguous association of MR signals to GFP tumors. Interactive visualization of out-of-RAM volumetric image data allowed one to zoom to a GFP-labeled micrometastasis, determine its anatomical location from color cryo-images, and establish the presence/absence of targeted CREKA-Gd and CREKA-Cy5. In a mouse with >160 GFP-labeled tumors, we determined that in the MR images every tumor in the lung >0.3 mm2 had visible signal and that some metastases as small as 0.1 mm2 were also visible. More tumors were visible in CREKA-Cy5 than in CREKA-Gd MRI. Tape transfer method and nonrigid registration allowed accurate (<11 μm error) registration of whole mouse histology to corresponding cryo-images. Histology showed inflammation and necrotic regions not labeled by imaging agents. This mouse-to-cells multiscale and multimodality platform should uniquely enable more informative and accurate studies of metastatic cancer imaging and therapy.

我们创建并评估了一个临床前、多模式成像和软件平台,以评估小转移瘤的分子成像。这包括实验方法(例如,gfp标记的肿瘤和高分辨率多光谱冷冻成像),非刚性图像配准以及显像剂靶向的交互式可视化。我们描述了早期应用于分子MR (CREKA-Gd)和红色荧光(CREKA-Cy5)显像剂靶向gfp标记的转移性肿瘤的技术细节。优化的非刚性冷冻mri配准使MR信号与GFP肿瘤的非模糊关联成为可能。ram外体积图像数据的交互式可视化允许人们放大gfp标记的微转移,从彩色冷冻图像确定其解剖位置,并确定靶向CREKA-Gd和CREKA-Cy5的存在/不存在。在具有>160个gfp标记肿瘤的小鼠中,我们确定在MR图像中,肺中>0.3 mm2的每个肿瘤都有可见信号,并且一些小至0.1 mm2的转移也可见。CREKA-Cy5中可见肿瘤多于CREKA-Gd。磁带转移方法和非刚性配准可以将整个小鼠组织精确(误差为μm)配准到相应的冷冻图像。组织学显示炎症和坏死区域未被显像剂标记。这种小鼠到细胞的多尺度和多模态平台应该能够独特地提供更多信息和准确的转移性癌症成像和治疗研究。
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引用次数: 12
Classification of Alzheimer's and MCI Patients from Semantically Parcelled PET Images: A Comparison between AV45 and FDG-PET. 从语义分割的 PET 图像对阿尔茨海默氏症和 MCI 患者进行分类:AV45 和 FDG-PET 的比较。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2018-03-15 eCollection Date: 2018-01-01 DOI: 10.1155/2018/1247430
Seyed Hossein Nozadi, Samuel Kadoury, The Alzheimer's Disease Neuroimaging Initiative

Early identification of dementia in the early or late stages of mild cognitive impairment (MCI) is crucial for a timely diagnosis and slowing down the progression of Alzheimer's disease (AD). Positron emission tomography (PET) is considered a highly powerful diagnostic biomarker, but few approaches investigated the efficacy of focusing on localized PET-active areas for classification purposes. In this work, we propose a pipeline using learned features from semantically labelled PET images to perform group classification. A deformable multimodal PET-MRI registration method is employed to fuse an annotated MNI template to each patient-specific PET scan, generating a fully labelled volume from which 10 common regions of interest used for AD diagnosis are extracted. The method was evaluated on 660 subjects from the ADNI database, yielding a classification accuracy of 91.2% for AD versus NC when using random forests combining features from cross-sectional and follow-up exams. A considerable improvement in the early versus late MCI classification accuracy was achieved using FDG-PET compared to the AV-45 compound, yielding a 72.5% rate. The pipeline demonstrates the potential of exploiting longitudinal multiregion PET features to improve cognitive assessment.

早期识别轻度认知障碍(MCI)早期或晚期的痴呆症对于及时诊断和延缓阿尔茨海默病(AD)的进展至关重要。正电子发射断层扫描(PET)被认为是一种功能强大的诊断生物标志物,但很少有方法研究过将重点放在局部 PET 活跃区域进行分类的有效性。在这项工作中,我们提出了一种利用从语义标记的 PET 图像中学习到的特征来进行群体分类的方法。我们采用了一种可变形的多模态 PET-MRI 配准方法,将注释过的 MNI 模板融合到每个患者特定的 PET 扫描中,生成一个完全标记的体积,从中提取出 10 个用于诊断 AD 的常见感兴趣区。该方法在 ADNI 数据库的 660 名受试者身上进行了评估,当使用结合横断面和随访检查特征的随机森林时,AD 与 NC 的分类准确率为 91.2%。使用 FDG-PET 与 AV-45 复合物相比,早期 MCI 与晚期 MCI 的分类准确率有了显著提高,达到了 72.5%。该管道展示了利用纵向多区域 PET 特征改进认知评估的潜力。
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引用次数: 0
Optimization of Visual Information Presentation for Visual Prosthesis. 视觉义肢视觉信息呈现的优化。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2018-03-14 eCollection Date: 2018-01-01 DOI: 10.1155/2018/3198342
Fei Guo, Yuan Yang, Yong Gao

Visual prosthesis applying electrical stimulation to restore visual function for the blind has promising prospects. However, due to the low resolution, limited visual field, and the low dynamic range of the visual perception, huge loss of information occurred when presenting daily scenes. The ability of object recognition in real-life scenarios is severely restricted for prosthetic users. To overcome the limitations, optimizing the visual information in the simulated prosthetic vision has been the focus of research. This paper proposes two image processing strategies based on a salient object detection technique. The two processing strategies enable the prosthetic implants to focus on the object of interest and suppress the background clutter. Psychophysical experiments show that techniques such as foreground zooming with background clutter removal and foreground edge detection with background reduction have positive impacts on the task of object recognition in simulated prosthetic vision. By using edge detection and zooming technique, the two processing strategies significantly improve the recognition accuracy of objects. We can conclude that the visual prosthesis using our proposed strategy can assist the blind to improve their ability to recognize objects. The results will provide effective solutions for the further development of visual prosthesis.

利用电刺激恢复盲人视觉功能的视觉假体具有广阔的应用前景。然而,由于分辨率低,视野有限,视觉感知的动态范围较低,在呈现日常场景时发生了巨大的信息丢失。在现实场景中,假肢使用者的物体识别能力受到严重限制。为了克服这些局限性,优化模拟假肢视觉中的视觉信息一直是研究的重点。本文提出了两种基于显著目标检测技术的图像处理策略。这两种处理策略使假体植入物能够聚焦于感兴趣的目标,并抑制背景杂波。心理物理实验表明,前景放大与背景杂波去除、前景边缘检测与背景还原等技术对模拟假肢视觉的目标识别任务有积极的影响。利用边缘检测和缩放技术,两种处理策略显著提高了目标的识别精度。我们可以得出结论,使用我们提出的策略的视觉假体可以帮助盲人提高他们识别物体的能力。研究结果将为视觉假体的进一步发展提供有效的解决方案。
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引用次数: 17
EBG Based Microstrip Patch Antenna for Brain Tumor Detection via Scattering Parameters in Microwave Imaging System. 微波成像系统中基于EBG的微带贴片天线散射参数检测脑肿瘤。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2018-02-12 eCollection Date: 2018-01-01 DOI: 10.1155/2018/8241438
Reefat Inum, Md Masud Rana, Kamrun Nahar Shushama, Md Anwarul Quader

A microwave brain imaging system model is envisaged to detect and visualize tumor inside the human brain. A compact and efficient microstrip patch antenna is used in the imaging technique to transmit equivalent signal and receive backscattering signal from the stratified human head model. Electromagnetic band gap (EBG) structure is incorporated on the antenna ground plane to enhance the performance. Rectangular and circular EBG structures are proposed to investigate the antenna performance. Incorporation of circular EBG on the antenna ground plane provides an improvement of 22.77% in return loss, 5.84% in impedance bandwidth, and 16.53% in antenna gain with respect to the patch antenna with rectangular EBG. The simulation results obtained from CST are compared to those obtained from HFSS to validate the design. Specific absorption rate (SAR) of the modeled head tissue for the proposed antenna is determined. Different SAR values are compared with the established standard SAR limit to provide a safety regulation of the imaging system. A monostatic radar-based confocal microwave imaging algorithm is applied to generate the image of tumor inside a six-layer human head phantom model. S-parameter signals obtained from circular EBG loaded patch antenna in different scanning modes are utilized in the imaging algorithm to effectively produce a high-resolution image which reliably indicates the presence of tumor inside human brain.

设想了一种微波脑成像系统模型,用于人脑内肿瘤的检测和可视化。成像技术采用紧凑高效的微带贴片天线,发射等效信号并接收分层人头模型的后向散射信号。为了提高天线的性能,在天线地平面上加入了电磁带隙结构。提出了矩形和圆形电子束结构来研究天线的性能。在天线地平面上加入圆形EBG,相对于采用矩形EBG的贴片天线,回波损耗提高22.77%,阻抗带宽提高5.84%,天线增益提高16.53%。将CST的仿真结果与HFSS的仿真结果进行了比较,验证了设计的正确性。确定了天线模型头部组织的比吸收率(SAR)。将不同的SAR值与建立的标准SAR限值进行比较,以提供成像系统的安全规范。采用基于单站雷达的共聚焦微波成像算法生成六层人体头部幻象模型内的肿瘤图像。成像算法利用圆形EBG加载贴片天线在不同扫描模式下获得的s参数信号,有效生成高分辨率图像,可靠地显示人脑内肿瘤的存在。
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引用次数: 44
Localizing Optic Disc in Retinal Image Automatically with Entropy Based Algorithm. 基于熵的视网膜图像视盘自动定位算法。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2018-02-06 eCollection Date: 2018-01-01 DOI: 10.1155/2018/2815163
Lamia AbedNoor Muhammed

Examining retinal image continuously plays an important role in determining human eye health; with any variation present in this image, it may be resulting from some disease. Therefore, there is a need for computer-aided scanning for retinal image to perform this task automatically and accurately. The fundamental step in this task is identification of the retina elements; optical disk localization is the most important one in this identification. Different optical disc localization algorithms have been suggested, such as an algorithm that would be proposed in this paper. The assumption is based on the fact that optical disc area has rich information, so its entropy value is more significant in this area. The suggested algorithm has recursive steps for testing the entropy of different patches in image; sliding window technique is used to get these patches in a specific way. The results of practical work were obtained using different common data set, which achieved good accuracy in trivial computation time. Finally, this paper consists of four sections: a section for introduction containing the related works, a section for methodology and material, a section for practical work with results, and a section for conclusion.

连续检查视网膜图像在判断人眼健康状况中起着重要作用;如果图像中出现任何变化,则可能是由某种疾病引起的。因此,需要计算机辅助视网膜图像扫描来自动准确地完成这一任务。这项任务的基本步骤是识别视网膜元素;光盘定位是其中最重要的一项。不同的光盘定位算法已经被提出,例如本文将提出的一种算法。该假设是基于光盘区域具有丰富的信息,因此其熵值在该区域更为显著。该算法采用递归步骤测试图像中不同斑块的熵;使用滑动窗口技术以特定的方式获得这些补丁。利用不同的常用数据集,得到了实际工作的结果,在较小的计算时间内取得了较好的精度。最后,本文由四个部分组成:绪论部分包含相关著作,方法论和材料部分,实际工作和结果部分,结论部分。
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引用次数: 18
Respiratory Motion Correction for Compressively Sampled Free Breathing Cardiac MRI Using Smooth l1-Norm Approximation. 使用平滑 l1-正则近似对压缩采样的自由呼吸心脏磁共振成像进行呼吸运动校正
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2018-01-23 eCollection Date: 2018-01-01 DOI: 10.1155/2018/7803067
Muhammad Bilal, Jawad Ali Shah, Ijaz M Qureshi, Kushsairy Kadir

Transformed domain sparsity of Magnetic Resonance Imaging (MRI) has recently been used to reduce the acquisition time in conjunction with compressed sensing (CS) theory. Respiratory motion during MR scan results in strong blurring and ghosting artifacts in recovered MR images. To improve the quality of the recovered images, motion needs to be estimated and corrected. In this article, a two-step approach is proposed for the recovery of cardiac MR images in the presence of free breathing motion. In the first step, compressively sampled MR images are recovered by solving an optimization problem using gradient descent algorithm. The L1-norm based regularizer, used in optimization problem, is approximated by a hyperbolic tangent function. In the second step, a block matching algorithm, known as Adaptive Rood Pattern Search (ARPS), is exploited to estimate and correct respiratory motion among the recovered images. The framework is tested for free breathing simulated and in vivo 2D cardiac cine MRI data. Simulation results show improved structural similarity index (SSIM), peak signal-to-noise ratio (PSNR), and mean square error (MSE) with different acceleration factors for the proposed method. Experimental results also provide a comparison between k-t FOCUSS with MEMC and the proposed method.

最近,磁共振成像(MRI)的变换域稀疏性与压缩传感(CS)理论相结合,被用于缩短采集时间。磁共振扫描过程中的呼吸运动会导致恢复的磁共振图像出现强烈的模糊和重影伪影。为了提高恢复图像的质量,需要对运动进行估计和校正。本文提出了一种分两步恢复存在自由呼吸运动的心脏磁共振图像的方法。第一步,使用梯度下降算法解决优化问题,恢复压缩采样的磁共振图像。优化问题中使用的基于 L1 准则的正则化器由双曲正切函数近似。第二步,利用称为自适应鲁德模式搜索(ARPS)的块匹配算法来估计和纠正恢复图像中的呼吸运动。该框架针对自由呼吸模拟和活体二维心脏椎体磁共振成像数据进行了测试。仿真结果表明,所提方法在不同加速因子下的结构相似性指数(SSIM)、峰值信噪比(PSNR)和均方误差(MSE)都有所改善。实验结果还提供了 k-t FOCUSS 与 MEMC 和建议方法之间的比较。
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引用次数: 0
Narrow-Energy-Width CT Based on Multivoltage X-Ray Image Decomposition. 基于多电压x射线图像分解的窄能宽CT。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2017-01-01 Epub Date: 2017-11-07 DOI: 10.1155/2017/8126019
Jiaotong Wei, Yan Han, Ping Chen

A polychromatic X-ray beam causes the grey of the reconstructed image to depend on its position within a solid and the material being imaged. This factor makes quantitative measurements via computed tomography (CT) imaging very difficult. To obtain a narrow-energy-width reconstructed image, we propose a model to decompose multivoltage X-ray images into many narrow-energy-width X-ray images by utilizing the low frequency characteristics of X-ray scattering. It needs no change of hardware in the typical CT system. Solving the decomposition model, narrow-energy-width projections are obtained and it is used to reconstruct the image. A cylinder composed of aluminum and silicon is used in a verification experiment. Some of the reconstructed images could be regarded as real narrow-energy-width reconstructed images, which demonstrates the effectiveness of the proposed method.

多色x射线束使重建图像的灰度取决于其在固体和被成像材料中的位置。这个因素使得通过计算机断层扫描(CT)成像进行定量测量非常困难。为了获得窄能宽重构图像,我们提出了一种利用x射线散射的低频特性将多电压x射线图像分解成多个窄能宽x射线图像的模型。在典型的CT系统中不需要改变硬件。对分解模型进行求解,得到窄能量宽度投影,用于图像重构。在验证实验中,采用了由铝和硅组成的圆筒。部分重构图像可以看作是真实的窄能宽重构图像,验证了所提方法的有效性。
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引用次数: 3
Corrigendum to "Automated Feature Extraction in Brain Tumor by Magnetic Resonance Imaging Using Gaussian Mixture Models". “使用高斯混合模型的磁共振成像在脑肿瘤中的自动特征提取”的更正。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2017-01-01 Epub Date: 2017-08-13 DOI: 10.1155/2017/3247974
Ahmad Chaddad, Markus Luedi, Pascal O Zinn, Rivka Colen

[This corrects the article DOI: 10.1155/2015/868031.].

[这更正了文章DOI: 10.1155/2015/868031.]。
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引用次数: 1
An Automatic Gastrointestinal Polyp Detection System in Video Endoscopy Using Fusion of Color Wavelet and Convolutional Neural Network Features. 基于彩色小波与卷积神经网络特征融合的视频内镜胃肠道息肉自动检测系统。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2017-01-01 Epub Date: 2017-08-14 DOI: 10.1155/2017/9545920
Mustain Billah, Sajjad Waheed, Mohammad Motiur Rahman

Gastrointestinal polyps are considered to be the precursors of cancer development in most of the cases. Therefore, early detection and removal of polyps can reduce the possibility of cancer. Video endoscopy is the most used diagnostic modality for gastrointestinal polyps. But, because it is an operator dependent procedure, several human factors can lead to misdetection of polyps. Computer aided polyp detection can reduce polyp miss detection rate and assists doctors in finding the most important regions to pay attention to. In this paper, an automatic system has been proposed as a support to gastrointestinal polyp detection. This system captures the video streams from endoscopic video and, in the output, it shows the identified polyps. Color wavelet (CW) features and convolutional neural network (CNN) features of video frames are extracted and combined together which are used to train a linear support vector machine (SVM). Evaluations on standard public databases show that the proposed system outperforms the state-of-the-art methods, gaining accuracy of 98.65%, sensitivity of 98.79%, and specificity of 98.52%.

在大多数情况下,胃肠道息肉被认为是癌症发展的前兆。因此,及早发现并切除息肉可降低癌变的可能性。视频内镜是胃肠道息肉最常用的诊断方法。但是,由于这是一个依赖于操作人员的过程,一些人为因素可能导致息肉的误诊。计算机辅助息肉检测可以降低息肉漏检率,帮助医生找到最需要注意的区域。本文提出了一种支持胃肠道息肉检测的自动系统。该系统从内窥镜视频中捕获视频流,并在输出中显示已识别的息肉。提取视频帧的彩色小波(CW)特征和卷积神经网络(CNN)特征并组合在一起,用于训练线性支持向量机(SVM)。对标准公共数据库的评估表明,该系统优于现有的方法,准确率为98.65%,灵敏度为98.79%,特异性为98.52%。
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引用次数: 83
Saliency-Based Bleeding Localization for Wireless Capsule Endoscopy Diagnosis. 基于显著性的无线胶囊内窥镜出血定位诊断。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2017-01-01 Epub Date: 2017-11-28 DOI: 10.1155/2017/8147632
Hongda Chen, Shaoze Wang, Yong Ding, Dahong Qian

Stomach bleeding is a kind of gastrointestinal disease which can be diagnosed noninvasively by wireless capsule endoscopy (WCE). However, it requires much time for physicians to scan large amount of WCE images. Alternatively, computer-assisted bleeding localization systems are developed where color, edge, and intensity features are defined to distinguish lesions from normal tissues. This paper proposes a saliency-based localization system where three saliency maps are computed: phase congruency-based edge saliency map derived from Log-Gabor filter bands, intensity histogram-guided intensity saliency map, and red proportion-based saliency map. Fusing the three maps together, the proposed system can detect bleeding regions by thresholding the fused saliency map. Results demonstrate the accuracy of 98.97% for our system to mark bleeding regions.

胃出血是一种可以通过无线胶囊内镜(WCE)进行无创诊断的胃肠道疾病。然而,对于医生来说,扫描大量的WCE图像需要花费大量的时间。另外,计算机辅助的出血定位系统被开发出来,其中定义了颜色、边缘和强度特征,以区分病变和正常组织。本文提出了一种基于显著性的定位系统,该系统计算了三个显著性图:基于相位一致性的Log-Gabor滤波带边缘显著性图、基于强度直方图的强度显著性图和基于红色比例的显著性图。该系统将三幅图像融合在一起,通过对融合后的显著性图像进行阈值处理,检测出出血区域。结果表明,该系统标记出血区域的准确率为98.97%。
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引用次数: 4
期刊
International Journal of Biomedical Imaging
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