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Comparison of Diffusion Tensor Imaging Metrics in Normal-Appearing White Matter to Cerebrovascular Lesions and Correlation with Cerebrovascular Disease Risk Factors and Severity. 正常脑白质弥散张量成像指标与脑血管病变的比较及其与脑血管疾病危险因素和严重程度的相关性
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2022-10-21 eCollection Date: 2022-01-01 DOI: 10.1155/2022/5860364
Seyyed M H Haddad, Christopher J M Scott, Miracle Ozzoude, Courtney Berezuk, Melissa Holmes, Sabrina Adamo, Joel Ramirez, Stephen R Arnott, Nuwan D Nanayakkara, Malcolm Binns, Derek Beaton, Wendy Lou, Kelly Sunderland, Sujeevini Sujanthan, Jane Lawrence, Donna Kwan, Brian Tan, Leanne Casaubon, Jennifer Mandzia, Demetrios Sahlas, Gustavo Saposnik, Ayman Hassan, Brian Levine, Paula McLaughlin, J B Orange, Angela Roberts, Angela Troyer, Sandra E Black, Dar Dowlatshahi, Stephen C Strother, Richard H Swartz, Sean Symons, Manuel Montero-Odasso, Ondri Investigators, Robert Bartha

Alterations in tissue microstructure in normal-appearing white matter (NAWM), specifically measured by diffusion tensor imaging (DTI) fractional anisotropy (FA), have been associated with cognitive outcomes following stroke. The purpose of this study was to comprehensively compare conventional DTI measures of tissue microstructure in NAWM to diverse vascular brain lesions in people with cerebrovascular disease (CVD) and to examine associations between FA in NAWM and cerebrovascular risk factors. DTI metrics including fractional anisotropy (FA), mean diffusivity (MD), axial diffusivity (AD), and radial diffusivity (RD) were measured in cerebral tissues and cerebrovascular anomalies from 152 people with CVD participating in the Ontario Neurodegenerative Disease Research Initiative (ONDRI). Ten cerebral tissue types were segmented including NAWM, and vascular lesions including stroke, periventricular and deep white matter hyperintensities, periventricular and deep lacunar infarcts, and perivascular spaces (PVS) using T1-weighted, proton density-weighted, T2-weighted, and fluid attenuated inversion recovery MRI scans. Mean DTI metrics were measured in each tissue region using a previously developed DTI processing pipeline and compared between tissues using multivariate analysis of covariance. Associations between FA in NAWM and several CVD risk factors were also examined. DTI metrics in vascular lesions differed significantly from healthy tissue. Specifically, all tissue types had significantly different MD values, while FA was also found to be different in most tissue types. FA in NAWM was inversely related to hypertension and modified Rankin scale (mRS). This study demonstrated the differences between conventional DTI metrics, FA, MD, AD, and RD, in cerebral vascular lesions and healthy tissue types. Therefore, incorporating DTI to characterize the integrity of the tissue microstructure could help to define the extent and severity of various brain vascular anomalies. The association between FA within NAWM and clinical evaluation of hypertension and disability provides further evidence that white matter microstructural integrity is impacted by cerebrovascular function.

通过弥散张量成像(DTI)分数各向异性(FA)测量的正常白质(NAWM)组织微观结构的改变与脑卒中后的认知结果有关。本研究的目的是全面比较脑血管疾病(CVD)患者NAWM组织微观结构的常规DTI测量,并研究NAWM中FA与脑血管危险因素之间的关系。DTI指标包括分数各向异性(FA)、平均扩散率(MD)、轴向扩散率(AD)和径向扩散率(RD),测量了参加安大略省神经退行性疾病研究计划(ONDRI)的152名CVD患者的脑组织和脑血管异常。采用t1加权、质子密度加权、t2加权和液体衰减反转恢复MRI扫描,对包括NAWM在内的10种脑组织进行分割,并对包括脑卒中、脑室周围和深部白质高信号、脑室周围和深部腔隙梗死以及血管周围间隙(PVS)在内的血管病变进行分割。使用先前开发的DTI处理管道测量每个组织区域的平均DTI指标,并使用多变量协方差分析比较组织之间的差异。NAWM中FA与几种CVD危险因素之间的关系也进行了研究。血管病变的DTI指标与健康组织有显著差异。具体而言,所有组织类型的MD值都有显著差异,而FA在大多数组织类型中也存在差异。NAWM患者FA与高血压、改良Rankin量表(mRS)呈负相关。本研究证明了常规DTI指标FA、MD、AD和RD在脑血管病变和健康组织类型中的差异。因此,结合DTI来表征组织微观结构的完整性有助于确定各种脑血管异常的程度和严重程度。NAWM内FA与高血压和残疾的临床评估之间的关联进一步证明了白质微结构完整性受到脑血管功能的影响。
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引用次数: 2
Towards an Accurate MRI Acute Ischemic Stroke Lesion Segmentation Based on Bioheat Equation and U-Net Model. 基于生物热方程和U-Net模型的MRI急性缺血性脑卒中病灶精确分割。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2022-07-16 eCollection Date: 2022-01-01 DOI: 10.1155/2022/5529726
Abdelmajid Bousselham, Omar Bouattane, Mohamed Youssfi, Abdelhadi Raihani

Acute ischemic stroke represents a cerebrovascular disease, for which it is practical, albeit challenging to segment and differentiate infarct core from salvageable penumbra brain tissue. Ischemic stroke causes the variation of cerebral blood flow and heat generation due to metabolism. Therefore, the temperature is modified in the ischemic stroke region. In this paper, we incorporate acute ischemic stroke temperature profile to reinforce segmentation accuracy in MRI. Pennes bioheat equation was used to generate brain thermal images that may provide rich information regarding the temperature change in acute ischemic stroke lesions. The thermal images were generated by calculating the temperature of the brain with acute ischemic stroke. Then, U-Net was used in this paper for the segmentation of acute ischemic stroke. A dataset of 3192 images was created to train U-Net using k-fold crossvalidation. The training time was about 10 hours and 35 minutes in NVIDIA GPU. Next, the obtained trained model was compared with recent methods to analyze the effect of the ischemic stroke temperature profile in segmentation. The obtained results show that significant parts of acute ischemic stroke and background areas are segmented only in thermal images, which proves the importance of using thermal information to improve the segmentation outcomes in MRI diagnosis.

急性缺血性脑卒中是一种脑血管疾病,尽管从可抢救的半暗区脑组织中分割和区分梗死核心具有挑战性,但它是实用的。缺血性脑卒中由于代谢引起脑血流量和产热的变化。因此,缺血性脑卒中区域的温度被修改。在本文中,我们结合急性缺血性脑卒中温度剖面来增强MRI分割的准确性。利用Pennes生物热方程生成脑热图像,可以提供关于急性缺血性脑卒中病变温度变化的丰富信息。热图像是通过计算急性缺血性脑卒中患者的大脑温度生成的。然后,本文采用U-Net方法对急性缺血性脑卒中进行图像分割。创建了3192张图像的数据集,使用k-fold交叉验证来训练U-Net。在NVIDIA GPU下的训练时间约为10小时35分钟。然后,将得到的训练模型与现有方法进行比较,分析脑缺血温度分布对分割的影响。结果表明,急性缺血性脑卒中的重要部分和背景区域仅在热图像中被分割,这证明了利用热信息改善MRI诊断分割结果的重要性。
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引用次数: 0
Relative Perfusion Differences between Parathyroid Adenomas and the Thyroid on Multiphase 4DCT 甲状旁腺腺瘤和甲状腺在多期4DCT上的相对灌注差异
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2022-05-20 DOI: 10.1155/2022/2984789
S. Raeymaeckers, Yannick De Brucker, Maurizio Tosi, N. Buls, J. Mey
A multiphase 4DCT technique can be useful for the detection of parathyroid adenomas. Up to 16 different phases can be obtained without significant increase of exposure dose using wide beam axial scanning. This technique also allows for the calculation of perfusion parameters in suspected lesions. We present data on 19 patients with histologically proven parathyroid adenomas. We find a strong correlation between 2 perfusion parameters when comparing parathyroid adenomas and thyroid tissue: parathyroid adenomas show a 55% increase in blood flow (BF) (p < 0.001) and a 50% increase in blood volume (BV) (p < 0.001) as compared to normal thyroid tissue. The analysis of the ROC curve for the different perfusion parameters demonstrates a significantly high area under the curve for BF and BV, confirming these two perfusion parameters to be a possible discriminating tool to discern between parathyroid adenomas and thyroid tissue. These findings can help to discern parathyroid from thyroid tissue and may aid in the detection of parathyroid adenomas.
多期4DCT技术可用于甲状旁腺瘤的检测。使用宽束轴向扫描可以在不显著增加暴露剂量的情况下获得多达16个不同的相位。该技术还可以计算疑似病变的灌注参数。我们报告了19例经组织学证实的甲状旁腺瘤患者的资料。当比较甲状旁腺腺瘤和甲状腺组织时,我们发现两个灌注参数之间有很强的相关性:与正常甲状腺组织相比,甲状旁腺瘤的血流量(BF)增加55% (p < 0.001),血容量(BV)增加50% (p < 0.001)。不同灌注参数的ROC曲线分析显示BF和BV的曲线下面积明显高,证实这两个灌注参数可能是区分甲状旁腺瘤和甲状腺组织的鉴别工具。这些发现有助于从甲状腺组织中区分甲状旁腺,并可能有助于甲状旁腺瘤的检测。
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引用次数: 1
MRI Reconstruction with Separate Magnitude and Phase Priors Based on Dual-Tree Complex Wavelet Transform 基于对偶树复小波变换的分离幅度和相位先验的MRI重建
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2022-04-29 DOI: 10.1155/2022/7251674
W. He, Linman Zhao
The methods of compressed sensing magnetic resonance imaging (CS-MRI) can be divided into two categories roughly based on the number of target variables. One group devotes to estimating the complex-valued MRI image. And the other calculates the magnitude and phase parts of the complex-valued MRI image, respectively, by enforcing separate penalties on them. We propose a new CS-based method based on dual-tree complex wavelet (DT CWT) sparsity, which is under the frame of the second class of CS-MRI. Owing to the separate regularization frame, this method reduces the impact of the phase jumps (that means the jumps or discontinuities of phase values) on magnitude reconstruction. Moreover, by virtue of the excellent features of DT CWT, such as nonoscillating envelope of coefficients and multidirectional selectivity, the proposed method is capable of capturing more details in the magnitude and phase images. The experimental results show that the proposed method recovers the image contour and edges information well and can eliminate the artifacts in magnitude results caused by phase jumps.
压缩传感磁共振成像(CS-MRI)的方法大致可以根据目标变量的数量分为两类。一组致力于估计复值MRI图像。另一个通过对复值MRI图像执行单独的惩罚,分别计算它们的幅度和相位部分。在第二类CS-MRI的框架下,我们提出了一种基于对偶树复小波稀疏性的新的CS方法。由于独立的正则化框架,该方法减少了相位跳跃(即相位值的跳跃或不连续)对幅度重建的影响。此外,由于DT CWT的优异特性,如系数的非振荡包络和多向选择性,该方法能够在幅度和相位图像中捕捉更多细节。实验结果表明,该方法能很好地恢复图像的轮廓和边缘信息,并能消除相位跳跃引起的幅度结果中的伪影。
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引用次数: 0
Content-Based Image Retrieval Using Colour, Gray, Advanced Texture, Shape Features, and Random Forest Classifier with Optimized Particle Swarm Optimization 基于颜色、灰度、高级纹理、形状特征和具有优化粒子群优化的随机森林分类器的内容图像检索
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2022-04-21 DOI: 10.1155/2022/3211793
Dr. MANOHARAN SUBRAMANIAN, Velmurugan Lingamuthu, Chandran Venkatesan, S. Perumal
In this paper, a new approach for Content-Based Image Retrieval (CBIR) has been addressed by extracting colour, gray, advanced texture, and shape features for input query images. Contour-based shape feature extraction methods and image moment extraction techniques are used to extract the shape features and shape invariant features. The informative features are selected from extracted features and combined colour, gray, texture, and shape features by using PSO. The target image has been retrieved for the given query image by training the random forest classifier. The proposed colour, gray, advanced texture, shape feature, and random forest classifier with optimized PSO (CGATSFRFOPSO) provide efficient retrieval of images in a large-scale database. The main objective of this research work is to improve the efficiency and effectiveness of the CBIR system by extracting the features like colour, gray, texture, and shape from database images and query images. These extracted features are processed in various levels like removing redundancy by optimal feature selection and fusion by optimal weighted linear combination. The Particle Swarm Optimization algorithm is used for selecting the informative features from gray and colour and texture features. The matching accuracy and the speed of image retrieval are improved by an ensemble of machine learning algorithms for the similarity search.
本文提出了一种基于内容的图像检索(CBIR)的新方法,即提取输入查询图像的颜色、灰度、高级纹理和形状特征。采用基于轮廓的形状特征提取方法和图像矩提取技术提取形状特征和形状不变特征。利用粒子群算法从提取的特征中选择信息特征,并结合颜色、灰度、纹理和形状特征。通过训练随机森林分类器,对给定的查询图像检索到目标图像。提出的颜色、灰度、高级纹理、形状特征和随机森林分类器与优化的粒子群算法(CGATSFRFOPSO)提供了大规模数据库中图像的高效检索。本研究的主要目的是通过从数据库图像和查询图像中提取颜色、灰度、纹理、形状等特征,提高CBIR系统的效率和有效性。对提取的特征进行最优特征选择去除冗余和最优加权线性组合融合等不同层次的处理。采用粒子群算法从灰度、颜色和纹理特征中选择信息特征。通过对相似度搜索的机器学习算法的集成,提高了匹配精度和图像检索速度。
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引用次数: 4
Modified Gray-Level Haralick Texture Features for Early Detection of Diabetes Mellitus and High Cholesterol with Iris Image 改进灰度Haralick纹理特征用于虹膜图像早期检测糖尿病和高胆固醇
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2022-04-20 DOI: 10.1155/2022/5336373
R. K. Hapsari, Miswanto, R. Rulaningtyas, H. Suprajitno, H. Gan
Iris has specific advantages, which can record all organ conditions, body construction, and psychological disorders. Traces related to the intensity or deviation of organs caused by the disease are recorded systematically and patterned on the iris and its surroundings. The pattern that appears on the iris can be recognized by using image processing techniques. Based on the pattern in the iris image, this paper aims to provide an alternative noninvasive method for the early detection of DM and HC. In this paper, we perform detection based on iris images for two diseases, DM and HC simultaneously, by developing the invariant Haralick feature on quantized images with 256, 128, 64, 32, and 16 gray levels. The feature extraction process does early detection based on iris images. Researchers and scientists have introduced many methods, one of which is the feature extraction of the gray-level co-occurrence matrix (GLCM). Early detection based on the iris is done using the volumetric GLCM development, namely, 3D-GLCM. Based on 3D-GLCM, which is formed at a distance of d = 1 and in the direction of 0°, 45°, 90°, 135°, 180°, 225°, 270°, and 315°, it is used to calculate Haralick features and develop Haralick features which are invariant to the number of quantization gray levels. The test results show that the invariant feature with a gray level of 256 has the best identification performance. In dataset I, the accuracy value is 97.92, precision is 96.88, and recall is 95.83, while in dataset II, the accuracy value is 95.83, precision is 89.69, and recall is 91.67. The identification of DM and HC trained on invariant features showed higher accuracy than the original features.
虹膜具有特定的优势,可以记录所有器官状况、身体结构和心理障碍。与疾病引起的器官强度或偏差有关的痕迹被系统地记录下来,并在虹膜及其周围形成图案。虹膜上出现的图案可以通过使用图像处理技术来识别。基于虹膜图像中的模式,本文旨在为糖尿病和HC的早期检测提供一种替代的非侵入性方法。在本文中,我们通过在具有256、128、64、32和16灰度级的量化图像上发展不变的Haralick特征,同时基于虹膜图像对DM和HC这两种疾病进行检测。特征提取过程基于虹膜图像进行早期检测。研究人员和科学家已经介绍了许多方法,其中之一是灰度共生矩阵(GLCM)的特征提取。基于虹膜的早期检测是使用体积GLCM开发完成的,即3D-GLCM。基于距离d=1、方向为0°、45°、90°、135°、180°、225°、270°和315°的3D-GLCM,它被用来计算Haralick特征,并发展出对量化灰度级数量不变的Haralick特性。测试结果表明,灰度为256的不变特征具有最好的识别性能。在数据集I中,准确度值为97.92,准确度为96.88,召回率为95.83;而在数据集II中,准确率值为95.83,准确度89.69,召回率91.67。在不变特征上训练的DM和HC的识别显示出比原始特征更高的精度。
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引用次数: 1
Water Cycle Bat Algorithm and Dictionary-Based Deformable Model for Lung Tumor Segmentation. 肺肿瘤分割的水循环蝙蝠算法和基于字典的变形模型。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2021-11-22 eCollection Date: 2021-01-01 DOI: 10.1155/2021/3492099
Mamtha V Shetty, D Jayadevappa, G N Veena

Among the different types of cancers, lung cancer is one of the widespread diseases which causes the highest number of deaths every year. The early detection of lung cancer is very essential for increasing the survival rate in patients. Although computed tomography (CT) is the preferred choice for lungs imaging, sometimes CT images may produce less tumor visibility regions and unconstructive rates in tumor portions. Hence, the development of an efficient segmentation technique is necessary. In this paper, water cycle bat algorithm- (WCBA-) based deformable model approach is proposed for lung tumor segmentation. In the preprocessing stage, a median filter is used to remove the noise from the input image and to segment the lung lobe regions, and Bayesian fuzzy clustering is applied. In the proposed method, deformable model is modified by the dictionary-based algorithm to segment the lung tumor accurately. In the dictionary-based algorithm, the update equation is modified by the proposed WCBA and is designed by integrating water cycle algorithm (WCA) and bat algorithm (BA).

在不同类型的癌症中,肺癌是每年导致死亡人数最多的广泛疾病之一。肺癌的早期发现对提高患者的生存率至关重要。尽管计算机断层扫描(CT)是肺部成像的首选,但有时CT图像可能产生较少的肿瘤可见区域和肿瘤部分的非建设性率。因此,有必要开发一种高效的分割技术。本文提出了一种基于水循环蝙蝠算法(WCBA)的可变形模型肺肿瘤分割方法。在预处理阶段,使用中值滤波器去除输入图像中的噪声,对肺叶区域进行分割,并采用贝叶斯模糊聚类。该方法利用基于字典的算法对可变形模型进行修正,实现对肺肿瘤的精确分割。在基于字典的算法中,采用所提出的WCBA对更新方程进行修正,并将水循环算法(WCA)和蝙蝠算法(BA)相结合进行设计。
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引用次数: 2
Automatic Quantification of Atherosclerosis in Contrast-Enhanced MicroCT Scans of Mouse Aortas Ex Vivo. 在离体小鼠主动脉增强微ct扫描中动脉粥样硬化的自动定量。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2021-09-20 eCollection Date: 2021-01-01 DOI: 10.1155/2021/4998786
Vincent A Stadelmann, Gabrielle Boyd, Martin Guillot, Jean-Guy Bienvenu, Charles Glaus, Aurore Varela

Objective: While microCT evaluation of atherosclerotic lesions in mice has been formally validated, existing image processing methods remain undisclosed. We aimed to develop and validate a reproducible image processing workflow based on phosphotungstic acid-enhanced microCT scans for the volumetric quantification of atherosclerotic lesions in entire mouse aortas. Approach and Results. 42 WT and 42 apolipoprotein E knockout mouse aortas were scanned. The walls, lumen, and plaque objects were segmented using dual-threshold algorithms. Aortic and plaque volumes were computed by voxel counting and lesion surface by triangulation. The results were validated against manual and histological evaluations. Knockout mice had a significant increase in plaque volume compared to wild types with a plaque to aorta volume ratio of 0.3%, 2.8%, and 9.8% at weeks 13, 18, and 26, respectively. Automatic segmentation correlated with manual (r 2 ≥ 0.89; p < .001) and histological evaluations (r 2 > 0.96; p < .001).

Conclusions: The semiautomatic workflow enabled rapid quantification of atherosclerotic plaques in mice with minimal manual work.

目的:虽然微ct对小鼠动脉粥样硬化病变的评估已被正式验证,但现有的图像处理方法仍未公开。我们旨在开发和验证基于磷钨酸增强微ct扫描的可重复图像处理工作流程,用于对整个小鼠主动脉的动脉粥样硬化病变进行体积量化。方法与结果:对42只WT和42只载脂蛋白E敲除小鼠主动脉进行扫描。采用双阈值算法对壁、管腔和斑块进行分割。通过体素计数计算主动脉和斑块体积,通过三角剖分计算病变表面。通过手工和组织学评价验证了结果。与野生型相比,基因敲除小鼠的斑块体积显著增加,在13周、18周和26周时,斑块与主动脉的体积比分别为0.3%、2.8%和9.8%。自动分割与人工分割相关(r 2≥0.89;P < 0.001)和组织学评价(r 2 > 0.96;P < 0.001)。结论:半自动工作流程能够以最少的手工工作快速定量小鼠动脉粥样硬化斑块。
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引用次数: 3
Corrigendum to "Robust Diffeomorphic Mapping via Geodesically Controlled Active Shapes". “通过测地线控制的活动形状进行鲁棒微分同构映射”的勘误表。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2021-05-26 eCollection Date: 2021-01-01 DOI: 10.1155/2021/9780202
Daniel J Tward, Jun Ma, Michael I Miller, Laurent Younes

[This corrects the article DOI: 10.1155/2013/205494.].

[这更正了文章DOI: 10.1155/2013/205494]。
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引用次数: 0
Geometric Regularized Hopfield Neural Network for Medical Image Enhancement. 用于医学图像增强的几何正则化Hopfield神经网络。
IF 7.6 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2021-01-22 eCollection Date: 2021-01-01 DOI: 10.1155/2021/6664569
Fayadh Alenezi, K C Santosh

One of the major shortcomings of Hopfield neural network (HNN) is that the network may not always converge to a fixed point. HNN, predominantly, is limited to local optimization during training to achieve network stability. In this paper, the convergence problem is addressed using two approaches: (a) by sequencing the activation of a continuous modified HNN (MHNN) based on the geometric correlation of features within various image hyperplanes via pixel gradient vectors and (b) by regulating geometric pixel gradient vectors. These are achieved by regularizing proposed MHNNs under cohomology, which enables them to act as an unconventional filter for pixel spectral sequences. It shifts the focus to both local and global optimizations in order to strengthen feature correlations within each image subspace. As a result, it enhances edges, information content, contrast, and resolution. The proposed algorithm was tested on fifteen different medical images, where evaluations were made based on entropy, visual information fidelity (VIF), weighted peak signal-to-noise ratio (WPSNR), contrast, and homogeneity. Our results confirmed superiority as compared to four existing benchmark enhancement methods.

Hopfield神经网络(HNN)的一个主要缺点是网络可能不总是收敛到一个不动点。HNN主要是在训练过程中进行局部优化,以达到网络的稳定性。本文采用两种方法解决了收敛问题:(a)通过像素梯度向量对基于各种图像超平面内特征的几何相关性的连续修正HNN (MHNN)的激活排序;(b)通过调节几何像素梯度向量。这些是通过在上同调下正则化所提出的mhnn来实现的,这使它们能够作为像素光谱序列的非常规滤波器。它将重点转移到局部和全局优化,以加强每个图像子空间内的特征相关性。因此,它增强了边缘、信息内容、对比度和分辨率。该算法在15幅不同的医学图像上进行了测试,并根据熵、视觉信息保真度(VIF)、加权峰值信噪比(WPSNR)、对比度和均匀性进行了评估。与现有的四种基准增强方法相比,我们的结果证实了其优越性。
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引用次数: 25
期刊
International Journal of Biomedical Imaging
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