Pub Date : 2022-10-21eCollection Date: 2022-01-01DOI: 10.1155/2022/5860364
Seyyed M H Haddad, Christopher J M Scott, Miracle Ozzoude, Courtney Berezuk, Melissa Holmes, Sabrina Adamo, Joel Ramirez, Stephen R Arnott, Nuwan D Nanayakkara, Malcolm Binns, Derek Beaton, Wendy Lou, Kelly Sunderland, Sujeevini Sujanthan, Jane Lawrence, Donna Kwan, Brian Tan, Leanne Casaubon, Jennifer Mandzia, Demetrios Sahlas, Gustavo Saposnik, Ayman Hassan, Brian Levine, Paula McLaughlin, J B Orange, Angela Roberts, Angela Troyer, Sandra E Black, Dar Dowlatshahi, Stephen C Strother, Richard H Swartz, Sean Symons, Manuel Montero-Odasso, Ondri Investigators, Robert Bartha
Alterations in tissue microstructure in normal-appearing white matter (NAWM), specifically measured by diffusion tensor imaging (DTI) fractional anisotropy (FA), have been associated with cognitive outcomes following stroke. The purpose of this study was to comprehensively compare conventional DTI measures of tissue microstructure in NAWM to diverse vascular brain lesions in people with cerebrovascular disease (CVD) and to examine associations between FA in NAWM and cerebrovascular risk factors. DTI metrics including fractional anisotropy (FA), mean diffusivity (MD), axial diffusivity (AD), and radial diffusivity (RD) were measured in cerebral tissues and cerebrovascular anomalies from 152 people with CVD participating in the Ontario Neurodegenerative Disease Research Initiative (ONDRI). Ten cerebral tissue types were segmented including NAWM, and vascular lesions including stroke, periventricular and deep white matter hyperintensities, periventricular and deep lacunar infarcts, and perivascular spaces (PVS) using T1-weighted, proton density-weighted, T2-weighted, and fluid attenuated inversion recovery MRI scans. Mean DTI metrics were measured in each tissue region using a previously developed DTI processing pipeline and compared between tissues using multivariate analysis of covariance. Associations between FA in NAWM and several CVD risk factors were also examined. DTI metrics in vascular lesions differed significantly from healthy tissue. Specifically, all tissue types had significantly different MD values, while FA was also found to be different in most tissue types. FA in NAWM was inversely related to hypertension and modified Rankin scale (mRS). This study demonstrated the differences between conventional DTI metrics, FA, MD, AD, and RD, in cerebral vascular lesions and healthy tissue types. Therefore, incorporating DTI to characterize the integrity of the tissue microstructure could help to define the extent and severity of various brain vascular anomalies. The association between FA within NAWM and clinical evaluation of hypertension and disability provides further evidence that white matter microstructural integrity is impacted by cerebrovascular function.
{"title":"Comparison of Diffusion Tensor Imaging Metrics in Normal-Appearing White Matter to Cerebrovascular Lesions and Correlation with Cerebrovascular Disease Risk Factors and Severity.","authors":"Seyyed M H Haddad, Christopher J M Scott, Miracle Ozzoude, Courtney Berezuk, Melissa Holmes, Sabrina Adamo, Joel Ramirez, Stephen R Arnott, Nuwan D Nanayakkara, Malcolm Binns, Derek Beaton, Wendy Lou, Kelly Sunderland, Sujeevini Sujanthan, Jane Lawrence, Donna Kwan, Brian Tan, Leanne Casaubon, Jennifer Mandzia, Demetrios Sahlas, Gustavo Saposnik, Ayman Hassan, Brian Levine, Paula McLaughlin, J B Orange, Angela Roberts, Angela Troyer, Sandra E Black, Dar Dowlatshahi, Stephen C Strother, Richard H Swartz, Sean Symons, Manuel Montero-Odasso, Ondri Investigators, Robert Bartha","doi":"10.1155/2022/5860364","DOIUrl":"https://doi.org/10.1155/2022/5860364","url":null,"abstract":"<p><p>Alterations in tissue microstructure in normal-appearing white matter (NAWM), specifically measured by diffusion tensor imaging (DTI) fractional anisotropy (FA), have been associated with cognitive outcomes following stroke. The purpose of this study was to comprehensively compare conventional DTI measures of tissue microstructure in NAWM to diverse vascular brain lesions in people with cerebrovascular disease (CVD) and to examine associations between FA in NAWM and cerebrovascular risk factors. DTI metrics including fractional anisotropy (FA), mean diffusivity (MD), axial diffusivity (AD), and radial diffusivity (RD) were measured in cerebral tissues and cerebrovascular anomalies from 152 people with CVD participating in the Ontario Neurodegenerative Disease Research Initiative (ONDRI). Ten cerebral tissue types were segmented including NAWM, and vascular lesions including stroke, periventricular and deep white matter hyperintensities, periventricular and deep lacunar infarcts, and perivascular spaces (PVS) using T<sub>1</sub>-weighted, proton density-weighted, T<sub>2</sub>-weighted, and fluid attenuated inversion recovery MRI scans. Mean DTI metrics were measured in each tissue region using a previously developed DTI processing pipeline and compared between tissues using multivariate analysis of covariance. Associations between FA in NAWM and several CVD risk factors were also examined. DTI metrics in vascular lesions differed significantly from healthy tissue. Specifically, all tissue types had significantly different MD values, while FA was also found to be different in most tissue types. FA in NAWM was inversely related to hypertension and modified Rankin scale (mRS). This study demonstrated the differences between conventional DTI metrics, FA, MD, AD, and RD, in cerebral vascular lesions and healthy tissue types. Therefore, incorporating DTI to characterize the integrity of the tissue microstructure could help to define the extent and severity of various brain vascular anomalies. The association between FA within NAWM and clinical evaluation of hypertension and disability provides further evidence that white matter microstructural integrity is impacted by cerebrovascular function.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":"5860364"},"PeriodicalIF":7.6,"publicationDate":"2022-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9616672/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40445853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Acute ischemic stroke represents a cerebrovascular disease, for which it is practical, albeit challenging to segment and differentiate infarct core from salvageable penumbra brain tissue. Ischemic stroke causes the variation of cerebral blood flow and heat generation due to metabolism. Therefore, the temperature is modified in the ischemic stroke region. In this paper, we incorporate acute ischemic stroke temperature profile to reinforce segmentation accuracy in MRI. Pennes bioheat equation was used to generate brain thermal images that may provide rich information regarding the temperature change in acute ischemic stroke lesions. The thermal images were generated by calculating the temperature of the brain with acute ischemic stroke. Then, U-Net was used in this paper for the segmentation of acute ischemic stroke. A dataset of 3192 images was created to train U-Net using k-fold crossvalidation. The training time was about 10 hours and 35 minutes in NVIDIA GPU. Next, the obtained trained model was compared with recent methods to analyze the effect of the ischemic stroke temperature profile in segmentation. The obtained results show that significant parts of acute ischemic stroke and background areas are segmented only in thermal images, which proves the importance of using thermal information to improve the segmentation outcomes in MRI diagnosis.
{"title":"Towards an Accurate MRI Acute Ischemic Stroke Lesion Segmentation Based on Bioheat Equation and U-Net Model.","authors":"Abdelmajid Bousselham, Omar Bouattane, Mohamed Youssfi, Abdelhadi Raihani","doi":"10.1155/2022/5529726","DOIUrl":"https://doi.org/10.1155/2022/5529726","url":null,"abstract":"<p><p>Acute ischemic stroke represents a cerebrovascular disease, for which it is practical, albeit challenging to segment and differentiate infarct core from salvageable penumbra brain tissue. Ischemic stroke causes the variation of cerebral blood flow and heat generation due to metabolism. Therefore, the temperature is modified in the ischemic stroke region. In this paper, we incorporate acute ischemic stroke temperature profile to reinforce segmentation accuracy in MRI. Pennes bioheat equation was used to generate brain thermal images that may provide rich information regarding the temperature change in acute ischemic stroke lesions. The thermal images were generated by calculating the temperature of the brain with acute ischemic stroke. Then, U-Net was used in this paper for the segmentation of acute ischemic stroke. A dataset of 3192 images was created to train U-Net using <i>k</i>-fold crossvalidation. The training time was about 10 hours and 35 minutes in NVIDIA GPU. Next, the obtained trained model was compared with recent methods to analyze the effect of the ischemic stroke temperature profile in segmentation. The obtained results show that significant parts of acute ischemic stroke and background areas are segmented only in thermal images, which proves the importance of using thermal information to improve the segmentation outcomes in MRI diagnosis.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":"5529726"},"PeriodicalIF":7.6,"publicationDate":"2022-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9308529/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40648868","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Raeymaeckers, Yannick De Brucker, Maurizio Tosi, N. Buls, J. Mey
A multiphase 4DCT technique can be useful for the detection of parathyroid adenomas. Up to 16 different phases can be obtained without significant increase of exposure dose using wide beam axial scanning. This technique also allows for the calculation of perfusion parameters in suspected lesions. We present data on 19 patients with histologically proven parathyroid adenomas. We find a strong correlation between 2 perfusion parameters when comparing parathyroid adenomas and thyroid tissue: parathyroid adenomas show a 55% increase in blood flow (BF) (p < 0.001) and a 50% increase in blood volume (BV) (p < 0.001) as compared to normal thyroid tissue. The analysis of the ROC curve for the different perfusion parameters demonstrates a significantly high area under the curve for BF and BV, confirming these two perfusion parameters to be a possible discriminating tool to discern between parathyroid adenomas and thyroid tissue. These findings can help to discern parathyroid from thyroid tissue and may aid in the detection of parathyroid adenomas.
{"title":"Relative Perfusion Differences between Parathyroid Adenomas and the Thyroid on Multiphase 4DCT","authors":"S. Raeymaeckers, Yannick De Brucker, Maurizio Tosi, N. Buls, J. Mey","doi":"10.1155/2022/2984789","DOIUrl":"https://doi.org/10.1155/2022/2984789","url":null,"abstract":"A multiphase 4DCT technique can be useful for the detection of parathyroid adenomas. Up to 16 different phases can be obtained without significant increase of exposure dose using wide beam axial scanning. This technique also allows for the calculation of perfusion parameters in suspected lesions. We present data on 19 patients with histologically proven parathyroid adenomas. We find a strong correlation between 2 perfusion parameters when comparing parathyroid adenomas and thyroid tissue: parathyroid adenomas show a 55% increase in blood flow (BF) (p < 0.001) and a 50% increase in blood volume (BV) (p < 0.001) as compared to normal thyroid tissue. The analysis of the ROC curve for the different perfusion parameters demonstrates a significantly high area under the curve for BF and BV, confirming these two perfusion parameters to be a possible discriminating tool to discern between parathyroid adenomas and thyroid tissue. These findings can help to discern parathyroid from thyroid tissue and may aid in the detection of parathyroid adenomas.","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":""},"PeriodicalIF":7.6,"publicationDate":"2022-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47701953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The methods of compressed sensing magnetic resonance imaging (CS-MRI) can be divided into two categories roughly based on the number of target variables. One group devotes to estimating the complex-valued MRI image. And the other calculates the magnitude and phase parts of the complex-valued MRI image, respectively, by enforcing separate penalties on them. We propose a new CS-based method based on dual-tree complex wavelet (DT CWT) sparsity, which is under the frame of the second class of CS-MRI. Owing to the separate regularization frame, this method reduces the impact of the phase jumps (that means the jumps or discontinuities of phase values) on magnitude reconstruction. Moreover, by virtue of the excellent features of DT CWT, such as nonoscillating envelope of coefficients and multidirectional selectivity, the proposed method is capable of capturing more details in the magnitude and phase images. The experimental results show that the proposed method recovers the image contour and edges information well and can eliminate the artifacts in magnitude results caused by phase jumps.
{"title":"MRI Reconstruction with Separate Magnitude and Phase Priors Based on Dual-Tree Complex Wavelet Transform","authors":"W. He, Linman Zhao","doi":"10.1155/2022/7251674","DOIUrl":"https://doi.org/10.1155/2022/7251674","url":null,"abstract":"The methods of compressed sensing magnetic resonance imaging (CS-MRI) can be divided into two categories roughly based on the number of target variables. One group devotes to estimating the complex-valued MRI image. And the other calculates the magnitude and phase parts of the complex-valued MRI image, respectively, by enforcing separate penalties on them. We propose a new CS-based method based on dual-tree complex wavelet (DT CWT) sparsity, which is under the frame of the second class of CS-MRI. Owing to the separate regularization frame, this method reduces the impact of the phase jumps (that means the jumps or discontinuities of phase values) on magnitude reconstruction. Moreover, by virtue of the excellent features of DT CWT, such as nonoscillating envelope of coefficients and multidirectional selectivity, the proposed method is capable of capturing more details in the magnitude and phase images. The experimental results show that the proposed method recovers the image contour and edges information well and can eliminate the artifacts in magnitude results caused by phase jumps.","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":""},"PeriodicalIF":7.6,"publicationDate":"2022-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49417825","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dr. MANOHARAN SUBRAMANIAN, Velmurugan Lingamuthu, Chandran Venkatesan, S. Perumal
In this paper, a new approach for Content-Based Image Retrieval (CBIR) has been addressed by extracting colour, gray, advanced texture, and shape features for input query images. Contour-based shape feature extraction methods and image moment extraction techniques are used to extract the shape features and shape invariant features. The informative features are selected from extracted features and combined colour, gray, texture, and shape features by using PSO. The target image has been retrieved for the given query image by training the random forest classifier. The proposed colour, gray, advanced texture, shape feature, and random forest classifier with optimized PSO (CGATSFRFOPSO) provide efficient retrieval of images in a large-scale database. The main objective of this research work is to improve the efficiency and effectiveness of the CBIR system by extracting the features like colour, gray, texture, and shape from database images and query images. These extracted features are processed in various levels like removing redundancy by optimal feature selection and fusion by optimal weighted linear combination. The Particle Swarm Optimization algorithm is used for selecting the informative features from gray and colour and texture features. The matching accuracy and the speed of image retrieval are improved by an ensemble of machine learning algorithms for the similarity search.
{"title":"Content-Based Image Retrieval Using Colour, Gray, Advanced Texture, Shape Features, and Random Forest Classifier with Optimized Particle Swarm Optimization","authors":"Dr. MANOHARAN SUBRAMANIAN, Velmurugan Lingamuthu, Chandran Venkatesan, S. Perumal","doi":"10.1155/2022/3211793","DOIUrl":"https://doi.org/10.1155/2022/3211793","url":null,"abstract":"In this paper, a new approach for Content-Based Image Retrieval (CBIR) has been addressed by extracting colour, gray, advanced texture, and shape features for input query images. Contour-based shape feature extraction methods and image moment extraction techniques are used to extract the shape features and shape invariant features. The informative features are selected from extracted features and combined colour, gray, texture, and shape features by using PSO. The target image has been retrieved for the given query image by training the random forest classifier. The proposed colour, gray, advanced texture, shape feature, and random forest classifier with optimized PSO (CGATSFRFOPSO) provide efficient retrieval of images in a large-scale database. The main objective of this research work is to improve the efficiency and effectiveness of the CBIR system by extracting the features like colour, gray, texture, and shape from database images and query images. These extracted features are processed in various levels like removing redundancy by optimal feature selection and fusion by optimal weighted linear combination. The Particle Swarm Optimization algorithm is used for selecting the informative features from gray and colour and texture features. The matching accuracy and the speed of image retrieval are improved by an ensemble of machine learning algorithms for the similarity search.","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":"2022 1","pages":""},"PeriodicalIF":7.6,"publicationDate":"2022-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44197574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
R. K. Hapsari, Miswanto, R. Rulaningtyas, H. Suprajitno, H. Gan
Iris has specific advantages, which can record all organ conditions, body construction, and psychological disorders. Traces related to the intensity or deviation of organs caused by the disease are recorded systematically and patterned on the iris and its surroundings. The pattern that appears on the iris can be recognized by using image processing techniques. Based on the pattern in the iris image, this paper aims to provide an alternative noninvasive method for the early detection of DM and HC. In this paper, we perform detection based on iris images for two diseases, DM and HC simultaneously, by developing the invariant Haralick feature on quantized images with 256, 128, 64, 32, and 16 gray levels. The feature extraction process does early detection based on iris images. Researchers and scientists have introduced many methods, one of which is the feature extraction of the gray-level co-occurrence matrix (GLCM). Early detection based on the iris is done using the volumetric GLCM development, namely, 3D-GLCM. Based on 3D-GLCM, which is formed at a distance of d = 1 and in the direction of 0°, 45°, 90°, 135°, 180°, 225°, 270°, and 315°, it is used to calculate Haralick features and develop Haralick features which are invariant to the number of quantization gray levels. The test results show that the invariant feature with a gray level of 256 has the best identification performance. In dataset I, the accuracy value is 97.92, precision is 96.88, and recall is 95.83, while in dataset II, the accuracy value is 95.83, precision is 89.69, and recall is 91.67. The identification of DM and HC trained on invariant features showed higher accuracy than the original features.
{"title":"Modified Gray-Level Haralick Texture Features for Early Detection of Diabetes Mellitus and High Cholesterol with Iris Image","authors":"R. K. Hapsari, Miswanto, R. Rulaningtyas, H. Suprajitno, H. Gan","doi":"10.1155/2022/5336373","DOIUrl":"https://doi.org/10.1155/2022/5336373","url":null,"abstract":"Iris has specific advantages, which can record all organ conditions, body construction, and psychological disorders. Traces related to the intensity or deviation of organs caused by the disease are recorded systematically and patterned on the iris and its surroundings. The pattern that appears on the iris can be recognized by using image processing techniques. Based on the pattern in the iris image, this paper aims to provide an alternative noninvasive method for the early detection of DM and HC. In this paper, we perform detection based on iris images for two diseases, DM and HC simultaneously, by developing the invariant Haralick feature on quantized images with 256, 128, 64, 32, and 16 gray levels. The feature extraction process does early detection based on iris images. Researchers and scientists have introduced many methods, one of which is the feature extraction of the gray-level co-occurrence matrix (GLCM). Early detection based on the iris is done using the volumetric GLCM development, namely, 3D-GLCM. Based on 3D-GLCM, which is formed at a distance of d = 1 and in the direction of 0°, 45°, 90°, 135°, 180°, 225°, 270°, and 315°, it is used to calculate Haralick features and develop Haralick features which are invariant to the number of quantization gray levels. The test results show that the invariant feature with a gray level of 256 has the best identification performance. In dataset I, the accuracy value is 97.92, precision is 96.88, and recall is 95.83, while in dataset II, the accuracy value is 95.83, precision is 89.69, and recall is 91.67. The identification of DM and HC trained on invariant features showed higher accuracy than the original features.","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":""},"PeriodicalIF":7.6,"publicationDate":"2022-04-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44414554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-11-22eCollection Date: 2021-01-01DOI: 10.1155/2021/3492099
Mamtha V Shetty, D Jayadevappa, G N Veena
Among the different types of cancers, lung cancer is one of the widespread diseases which causes the highest number of deaths every year. The early detection of lung cancer is very essential for increasing the survival rate in patients. Although computed tomography (CT) is the preferred choice for lungs imaging, sometimes CT images may produce less tumor visibility regions and unconstructive rates in tumor portions. Hence, the development of an efficient segmentation technique is necessary. In this paper, water cycle bat algorithm- (WCBA-) based deformable model approach is proposed for lung tumor segmentation. In the preprocessing stage, a median filter is used to remove the noise from the input image and to segment the lung lobe regions, and Bayesian fuzzy clustering is applied. In the proposed method, deformable model is modified by the dictionary-based algorithm to segment the lung tumor accurately. In the dictionary-based algorithm, the update equation is modified by the proposed WCBA and is designed by integrating water cycle algorithm (WCA) and bat algorithm (BA).
{"title":"Water Cycle Bat Algorithm and Dictionary-Based Deformable Model for Lung Tumor Segmentation.","authors":"Mamtha V Shetty, D Jayadevappa, G N Veena","doi":"10.1155/2021/3492099","DOIUrl":"https://doi.org/10.1155/2021/3492099","url":null,"abstract":"<p><p>Among the different types of cancers, lung cancer is one of the widespread diseases which causes the highest number of deaths every year. The early detection of lung cancer is very essential for increasing the survival rate in patients. Although computed tomography (CT) is the preferred choice for lungs imaging, sometimes CT images may produce less tumor visibility regions and unconstructive rates in tumor portions. Hence, the development of an efficient segmentation technique is necessary. In this paper, water cycle bat algorithm- (WCBA-) based deformable model approach is proposed for lung tumor segmentation. In the preprocessing stage, a median filter is used to remove the noise from the input image and to segment the lung lobe regions, and Bayesian fuzzy clustering is applied. In the proposed method, deformable model is modified by the dictionary-based algorithm to segment the lung tumor accurately. In the dictionary-based algorithm, the update equation is modified by the proposed WCBA and is designed by integrating water cycle algorithm (WCA) and bat algorithm (BA).</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":"3492099"},"PeriodicalIF":7.6,"publicationDate":"2021-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8629667/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39951397","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-09-20eCollection Date: 2021-01-01DOI: 10.1155/2021/4998786
Vincent A Stadelmann, Gabrielle Boyd, Martin Guillot, Jean-Guy Bienvenu, Charles Glaus, Aurore Varela
Objective: While microCT evaluation of atherosclerotic lesions in mice has been formally validated, existing image processing methods remain undisclosed. We aimed to develop and validate a reproducible image processing workflow based on phosphotungstic acid-enhanced microCT scans for the volumetric quantification of atherosclerotic lesions in entire mouse aortas. Approach and Results. 42 WT and 42 apolipoprotein E knockout mouse aortas were scanned. The walls, lumen, and plaque objects were segmented using dual-threshold algorithms. Aortic and plaque volumes were computed by voxel counting and lesion surface by triangulation. The results were validated against manual and histological evaluations. Knockout mice had a significant increase in plaque volume compared to wild types with a plaque to aorta volume ratio of 0.3%, 2.8%, and 9.8% at weeks 13, 18, and 26, respectively. Automatic segmentation correlated with manual (r2 ≥ 0.89; p < .001) and histological evaluations (r2 > 0.96; p < .001).
Conclusions: The semiautomatic workflow enabled rapid quantification of atherosclerotic plaques in mice with minimal manual work.
{"title":"Automatic Quantification of Atherosclerosis in Contrast-Enhanced MicroCT Scans of Mouse Aortas Ex Vivo.","authors":"Vincent A Stadelmann, Gabrielle Boyd, Martin Guillot, Jean-Guy Bienvenu, Charles Glaus, Aurore Varela","doi":"10.1155/2021/4998786","DOIUrl":"https://doi.org/10.1155/2021/4998786","url":null,"abstract":"<p><strong>Objective: </strong>While microCT evaluation of atherosclerotic lesions in mice has been formally validated, existing image processing methods remain undisclosed. We aimed to develop and validate a reproducible image processing workflow based on phosphotungstic acid-enhanced microCT scans for the volumetric quantification of atherosclerotic lesions in entire mouse aortas. <i>Approach and Results</i>. 42 WT and 42 apolipoprotein E knockout mouse aortas were scanned. The walls, lumen, and plaque objects were segmented using dual-threshold algorithms. Aortic and plaque volumes were computed by voxel counting and lesion surface by triangulation. The results were validated against manual and histological evaluations. Knockout mice had a significant increase in plaque volume compared to wild types with a plaque to aorta volume ratio of 0.3%, 2.8%, and 9.8% at weeks 13, 18, and 26, respectively. Automatic segmentation correlated with manual (<i>r</i> <sup>2</sup> ≥ 0.89; <i>p</i> < .001) and histological evaluations (<i>r</i> <sup>2</sup> > 0.96; <i>p</i> < .001).</p><p><strong>Conclusions: </strong>The semiautomatic workflow enabled rapid quantification of atherosclerotic plaques in mice with minimal manual work.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":"4998786"},"PeriodicalIF":7.6,"publicationDate":"2021-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8478544/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39474114","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-05-26eCollection Date: 2021-01-01DOI: 10.1155/2021/9780202
Daniel J Tward, Jun Ma, Michael I Miller, Laurent Younes
[This corrects the article DOI: 10.1155/2013/205494.].
[这更正了文章DOI: 10.1155/2013/205494]。
{"title":"Corrigendum to \"Robust Diffeomorphic Mapping via Geodesically Controlled Active Shapes\".","authors":"Daniel J Tward, Jun Ma, Michael I Miller, Laurent Younes","doi":"10.1155/2021/9780202","DOIUrl":"https://doi.org/10.1155/2021/9780202","url":null,"abstract":"<p><p>[This corrects the article DOI: 10.1155/2013/205494.].</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":"9780202"},"PeriodicalIF":7.6,"publicationDate":"2021-05-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8179761/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39239836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-22eCollection Date: 2021-01-01DOI: 10.1155/2021/6664569
Fayadh Alenezi, K C Santosh
One of the major shortcomings of Hopfield neural network (HNN) is that the network may not always converge to a fixed point. HNN, predominantly, is limited to local optimization during training to achieve network stability. In this paper, the convergence problem is addressed using two approaches: (a) by sequencing the activation of a continuous modified HNN (MHNN) based on the geometric correlation of features within various image hyperplanes via pixel gradient vectors and (b) by regulating geometric pixel gradient vectors. These are achieved by regularizing proposed MHNNs under cohomology, which enables them to act as an unconventional filter for pixel spectral sequences. It shifts the focus to both local and global optimizations in order to strengthen feature correlations within each image subspace. As a result, it enhances edges, information content, contrast, and resolution. The proposed algorithm was tested on fifteen different medical images, where evaluations were made based on entropy, visual information fidelity (VIF), weighted peak signal-to-noise ratio (WPSNR), contrast, and homogeneity. Our results confirmed superiority as compared to four existing benchmark enhancement methods.
{"title":"Geometric Regularized Hopfield Neural Network for Medical Image Enhancement.","authors":"Fayadh Alenezi, K C Santosh","doi":"10.1155/2021/6664569","DOIUrl":"https://doi.org/10.1155/2021/6664569","url":null,"abstract":"<p><p>One of the major shortcomings of Hopfield neural network (HNN) is that the network may not always converge to a fixed point. HNN, predominantly, is limited to local optimization during training to achieve network stability. In this paper, the convergence problem is addressed using two approaches: (a) by sequencing the activation of a continuous modified HNN (MHNN) based on the geometric correlation of features within various image hyperplanes via pixel gradient vectors and (b) by regulating geometric pixel gradient vectors. These are achieved by regularizing proposed MHNNs under cohomology, which enables them to act as an unconventional filter for pixel spectral sequences. It shifts the focus to both local and global optimizations in order to strengthen feature correlations within each image subspace. As a result, it enhances edges, information content, contrast, and resolution. The proposed algorithm was tested on fifteen different medical images, where evaluations were made based on entropy, visual information fidelity (VIF), weighted peak signal-to-noise ratio (WPSNR), contrast, and homogeneity. Our results confirmed superiority as compared to four existing benchmark enhancement methods.</p>","PeriodicalId":47063,"journal":{"name":"International Journal of Biomedical Imaging","volume":" ","pages":"6664569"},"PeriodicalIF":7.6,"publicationDate":"2021-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7847341/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25341347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}