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Valorisation of whey by mixotrophic and heterotrophic cultivation of microalgae for biomass and lipid production 混合营养和异养培养微藻用于生物质和脂质生产的乳清价值
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-16 DOI: 10.1007/s10532-025-10203-8
Oto Jekabs Apse, Kristaps Neiberts, Santa Sukaruka, Tomass Tumpelis, Pavels Semjonovs

The dairy industry generates large volumes of whey, a nutrient rich by-product that is a threat to the environment because of a high lactose concentration. In this research, a potential of four microalgae strains – Tetradesmus obliquus MSCL 1710, Graesiella emersonii MSCL 1711, Chlorella vulgaris CCAP 211/111 and Scenedesmus quadricauda CCAP 276/16 was investigated to evaluate their growth under heterotrophic and mixotrophic conditions of lactose and its monosaccharides. This work specifically compares sweet whey (SW) and acid whey (AW) as a promising substrates for microalgal growth and lipid synthesis. Peculiar focus was given to local isolates—G. emersonii MSCL 1711 and T. obliquus MSCL 1710 cultivated in sweet (SW) and acidic whey (AW) at different concentrations and temperatures (15 °C and 25 °C). Mixotrophic cultivation in SW enhanced biomass productivity, with G. emersonii MSCL 1711 achieving 0.30 g/L/d and T. obliquus MSCL 1710 0.29 g/L/d at 25 °C. The highest lipid accumulation was observed in SW for G. emersonii MSCL 1711 at 15 °C, representing a 158.31% increase compared with the autotrophic control (mg/g dry weight). Additionally, β – galactosidase activity correlated with lactose assimilation in the medium for both cultures, suggesting that it is suitable for cultivation on whey substrates. The results confirm the ability of local microalgal strains to grow on SW, and on AW, demonstrating their potential for dairy by-product bioconversion into microalgal biomass for broad applications.

乳制品行业产生大量乳清,乳清是一种营养丰富的副产品,由于乳糖浓度高,对环境构成威胁。本研究以四株微藻——斜四角藻MSCL 1710、麦氏灰藻MSCL 1711、普通小球藻CCAP 211/111和四角藻CCAP 276/16为研究材料,考察了它们在乳糖及其单糖异养和混合营养条件下的生长潜力。这项工作特别比较了甜乳清(SW)和酸乳清(AW)作为微藻生长和脂质合成的有前途的底物。特别关注的是本地分离株g。在不同浓度和温度(15°C和25°C)的甜乳清(SW)和酸性乳清(AW)中培养emersonii MSCL 1711和T. obliquus MSCL 1710。SW混合营养培养提高了生物量生产力,25℃条件下,g . emersonii MSCL 1711和T. obliquus MSCL 1710的生物量生产力分别达到0.30 g/L/d和0.29 g/L/d。15°C条件下,曼陀罗氏杆菌MSCL 1711在SW中脂质积累最高,与自养对照(mg/g干重)相比增加了158.31%。此外,两种培养基中β -半乳糖苷酶活性与乳糖同化相关,表明它适合在乳清基质上培养。结果证实了当地微藻菌株在SW和AW上生长的能力,表明它们具有将乳制品副产品转化为微藻生物量的潜力,具有广泛的应用价值。
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引用次数: 0
Activity of Phanerochaete chrysosporium during degradation of diesel fuel-contaminated soil under solid-state fermentation: CO2 production and ligninolytic enzymes 固态发酵下黄孢平革菌降解柴油污染土壤的活性:CO2产和木质素分解酶
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-15 DOI: 10.1007/s10532-025-10202-9
Atefeh Etemadi-Khah, Ahmad Ali Pourbabaee

Diesel fuel is a complex petroleum compound that is considered an important and serious risk for organisms and their environment. There are different methods for soil cleaning from this compound, of which bioremediation is one of the best. This study was conducted to investigate the efficiency of Phanerochaete chrysosporium fungus in bioremediation of diesel fuel contaminated soil under oxygen-deficient conditions. In this study, soil samples free of petroleum compounds were manually contaminated with 3000 mg/kg of diesel fuel and incubated for 60 days at 30°C in a dark chamber. The amounts of CO2 production, microbial growth, manganese peroxidase, and lignin peroxidase enzyme activities were measured every 10 days. The results indicated that the amount of CO2 production in both pure and mixed cultures increased significantly from the beginning of the experiment to the 40th day, which was 22.96 and 25.53 mg/g/w, respectively. Manganese peroxidase and lignin peroxidase enzymes also first reached their maximum values on the 40th day, which were 225 U/L and 31.5 U/L, respectively, and then decreased. The average percentage of TPH degradation on different days showed that the biological decontamination rate of diesel fuel in pure and mixed culture was 79.62 and 83.17%, respectively, within 60 days. By comparing the biodegradation rate with other data, we concluded that P. chrysosporium can degrade diesel fuel under fermentation conditions and use its compounds to provide energy and carbon.

柴油是一种复杂的石油化合物,被认为对生物及其环境具有重要而严重的风险。从这种化合物中净化土壤有不同的方法,其中生物修复是最好的方法之一。本试验研究了黄孢Phanerochaete chrysosporium真菌对缺氧条件下柴油污染土壤的生物修复效果。在本研究中,不含石油化合物的土壤样品被3000 mg/kg柴油人工污染,并在30°C的暗室中孵育60天。每10 d测定CO2产量、微生物生长量、锰过氧化物酶和木质素过氧化物酶活性。结果表明,从实验开始到第40天,纯培养和混合培养的CO2产量均显著增加,分别为22.96和25.53 mg/g/w。锰过氧化物酶和木质素过氧化物酶也在第40天先达到最大值,分别为225 U/L和31.5 U/L,然后下降。不同天数的TPH平均降解率表明,60 d内柴油在纯培养和混合培养中的生物去污率分别为79.62%和83.17%。通过与其他数据的比较,我们得出结论,P. chrysosporium可以在发酵条件下降解柴油,并利用其化合物提供能量和碳。
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引用次数: 0
Microbial phytoremediation of contaminated soils irrigated with industrial effluents: a soil health perspective 用工业废水灌溉污染土壤的微生物植物修复:土壤健康观点。
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-11 DOI: 10.1007/s10532-025-10201-w
Amina Rasheed, Naila Khan, Nabila Shehzadi, Sajjad Hyder, Zarrin Fatima Rizvi, Amjad Shahzad Gondal, Noreen Khalid, Pamela Helué Morales-Sandoval, Sergio de los Santos-Villalobos, Lala Gurbanova, Rashid Iqbal, Mehdi Rahimi

Industrialization, urbanization, and poor farming practices have led to major problems regarding potentially toxic elements (PTEs). PTEs in industrial effluents adversely affect water quality, soil, plants, and aquatic life, and ultimately cause severe health problems in humans. Several strategies have been utilized to overcome this serious environmental issue. The conventional methods most commonly used for this purpose are expensive and not environmentally friendly. Phytoremediation is a very cost-effective and eco-friendly strategy where researchers are focusing their efforts nowadays. This technique utilizes plants to remove PTEs from the soil. The efficacy of phytoremediation is enhanced by the microorganisms in the rhizosphere, where microbes utilize root exudates as their energy source, which in turn remove or solubilize PTEs from the soil. Microbes have adopted several mechanisms that directly and/or indirectly assist plants in resisting PTE stress. These mechanisms include biosorption, bioaccumulation, efflux systems, enzymatic detoxification, siderophore production, biosurfactants, extracellular sequestration, intracellular sequestration, ACC-deaminase, IAA production, and phytohormone production. Plant–microbe interaction is one of the most successful approaches that not only aids in remediating PTEs from the soil but also assists plant development. The efficiency of microbial activity could be enhanced by inserting PTE resistance genes so that genetically engineered microbes (GEMs) work more efficiently to remove PTEs from soil or water. The current review addresses the deleterious effects of PTEs on living organisms and discusses possible cost-effective and eco-friendly microbial-assisted phytoremediation strategies to remove PTEs from soil contaminated with industrial effluents.

工业化、城市化和不良的耕作方式导致了潜在有毒元素(pte)的重大问题。工业废水中的pte对水质、土壤、植物和水生生物产生不利影响,并最终对人类造成严重的健康问题。为了克服这一严重的环境问题,已经采用了几种战略。用于此目的的最常用的传统方法既昂贵又不环保。植物修复是一种成本效益高、环境友好的方法,是目前研究的热点。这项技术利用植物从土壤中去除pte。根际微生物利用根分泌物作为其能量来源,进而从土壤中去除或溶解pte,从而增强了植物修复的效果。微生物采用了几种直接和/或间接帮助植物抵抗PTE胁迫的机制。这些机制包括生物吸收、生物积累、外排系统、酶解毒、铁载体的产生、生物表面活性剂、细胞外隔离、细胞内隔离、acc脱氨酶、IAA的产生和植物激素的产生。植物-微生物相互作用是最成功的方法之一,不仅有助于从土壤中修复pte,而且有助于植物的发育。通过插入PTE抗性基因,可以提高微生物活性的效率,从而使基因工程微生物(GEMs)更有效地从土壤或水中去除PTE。本综述讨论了pte对生物体的有害影响,并讨论了从工业废水污染的土壤中去除pte的可能的成本效益和生态友好的微生物辅助植物修复策略。
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引用次数: 0
A novel association by Rhodospirillum rubrum and Rhodobacter capsulatus for bioremediation of heavy metals from aqueous solutions 红红螺旋菌与荚膜红杆菌的新型联合生物修复水溶液中重金属
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-10 DOI: 10.1007/s10532-025-10199-1
Daniela Aparecida Santos, Gabriela Aparecida Santos, Miriam Maria de Resende, Larissa Nayhara Soares Santana Falleiros, Fabiana Regina Xavier Batista

Bioremediation is a promising method for removing heavy metals in contaminated effluents. Using several microorganisms, the process can provide efficient treatment, resulting in reduced waste generation, all while promoting sustainability. The current work evaluated the potential of the novel assembly by Rhodospirillum rubrum and Rhodobacter capsulatus to remove hexavalent chromium, total chromium, cadmium, and lead. In addition, photosynthetic pigment (bacteriochlorophyll-a and carotenoids) production and biomass increment were verified. A composite central design (CCD) was proposed to obtain models describing the behavior of the initial concentration of chromium, cadmium, and lead (independent variables). In the experiments described at the central point by the CCD, the co-culture (R. capsulatus: R. rubrum) was inoculated in 500 mL Erlenmeyer flasks containing an effluent consisting of RCV medium with heavy metals (20 mg/L Cr6+, 10 mg/L Cd2+ and 10 mg/L Pb2+). With a light intensity of 5760 lx and a biological cycle of 216 h, the maximum removals were 83% for total chromium, 30% for cadmium, and 80% for lead. Under these conditions, the biomass increased by 68% compared to the initial value (1.0 g/L), even in a highly toxic effluent.

生物修复是一种很有前途的去除污染废水中重金属的方法。使用几种微生物,该过程可以提供有效的处理,从而减少废物产生,同时促进可持续性。目前的工作评估了红红螺旋菌和荚膜红杆菌的新组合去除六价铬、总铬、镉和铅的潜力。此外,还验证了光合色素(细菌叶绿素-a和类胡萝卜素)的产生和生物量的增加。提出了一种复合中心设计(CCD)来获得描述铬、镉和铅(自变量)初始浓度行为的模型。在CCD中心点描述的实验中,将共培养物(荚膜r.r us: r.r rubrum)接种于500 mL Erlenmeyer烧瓶中,该烧瓶中含有含有重金属(20 mg/L Cr6+, 10 mg/L Cd2+和10 mg/L Pb2+)的RCV培养基。在光照强度为5760 lx,生物循环时间为216 h的条件下,总铬的最大去除率为83%,镉的最大去除率为30%,铅的最大去除率为80%。在这些条件下,即使在剧毒废水中,生物量也比初始值(1.0 g/L)增加了68%。
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引用次数: 0
Filamentous fungal-mediated melanin nanoparticles for heavy metal detoxification via bioadsorption: a sustainable approach 丝状真菌介导的黑色素纳米颗粒通过生物吸附对重金属解毒:一种可持续的方法。
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-07 DOI: 10.1007/s10532-025-10198-2
Michael Helan Soundra Rani, Sivakumar Sujith

The eradication of heavy metal contamination has emerged as a paramount objective in preserving and conserving global water resources. The present study highlights the potential of halophilic fungal melanin derived from Curvularia lunata as an eco-friendly, cost-effective, highly stable, and efficient biosorbent for removing toxic heavy metals. UV and FTIR spectroscopy characterization confirmed the presence of functional groups typical of eumelanin. Particle size analysis revealed a notable reduction in size from unmodified melanin (54.22–87.94 nm) to melanin nanoparticles (MNPs) (22.74–26.41 nm), indicating improved surface area for adsorption. Inductively Coupled Plasma Mass Spectrometry (ICP-MS) data further validated the superior adsorption capabilities of MNPs compared to unmodified melanin. Specifically, the MNPs exhibited a 100% removal efficiency of over 18 metals out of 24 at a concentration of 0.15 mg/L and at pH 7, surpassing the performance of native melanin. X-ray photoelectron spectroscopy (XPS) was applied to specify the elemental composition of the solid surfaces and the chemical forms of adsorbed metals. Ultrasound-assisted extraction (UAE) significantly enhances adsorption efficacy by facilitating better dispersion and generating a higher surface area, thereby increasing the Number of active binding sites available on MNPs for heavy metal chelation. This mycoremediation-based approach presents a scalable and industrially adaptable solution for water detoxification, offering an advantageous alternative to conventional high-performance membrane technologies with minimal process modifications.

消除重金属污染已成为保护和养护全球水资源的首要目标。本研究强调了从弯孢菌中提取的嗜盐真菌黑色素作为一种环保、经济、高稳定、高效的去除有毒重金属的生物吸附剂的潜力。紫外和红外光谱表征证实了真黑素的典型官能团的存在。粒径分析显示,从未修饰的黑色素(54.22-87.94 nm)到黑色素纳米颗粒(MNPs) (22.74-26.41 nm),其粒径显著减小,表明吸附表面积增加。电感耦合等离子体质谱(ICP-MS)数据进一步验证了MNPs与未修饰黑色素相比优越的吸附能力。具体来说,在浓度为0.15 mg/L、pH为7的条件下,MNPs对24种金属中的18种金属的去除率达到100%,超过了天然黑色素的去除率。利用x射线光电子能谱(XPS)测定了固体表面的元素组成和吸附金属的化学形态。超声辅助萃取(UAE)通过促进更好的分散和产生更高的表面积,从而增加MNPs上可用于重金属螯合的活性结合位点的数量,显著提高了吸附效果。这种基于微修复的方法为水解毒提供了一种可扩展和工业适应性的解决方案,以最小的工艺修改提供了传统高性能膜技术的优势替代方案。
{"title":"Filamentous fungal-mediated melanin nanoparticles for heavy metal detoxification via bioadsorption: a sustainable approach","authors":"Michael Helan Soundra Rani,&nbsp;Sivakumar Sujith","doi":"10.1007/s10532-025-10198-2","DOIUrl":"10.1007/s10532-025-10198-2","url":null,"abstract":"<div><p>The eradication of heavy metal contamination has emerged as a paramount objective in preserving and conserving global water resources. The present study highlights the potential of halophilic fungal melanin derived from <i>Curvularia lunata</i> as an eco-friendly, cost-effective, highly stable, and efficient biosorbent for removing toxic heavy metals. UV and FTIR spectroscopy characterization confirmed the presence of functional groups typical of eumelanin. Particle size analysis revealed a notable reduction in size from unmodified melanin (54.22–87.94 nm) to melanin nanoparticles (MNPs) (22.74–26.41 nm), indicating improved surface area for adsorption. Inductively Coupled Plasma Mass Spectrometry (ICP-MS) data further validated the superior adsorption capabilities of MNPs compared to unmodified melanin. Specifically, the MNPs exhibited a 100% removal efficiency of over 18 metals out of 24 at a concentration of 0.15 mg/L and at pH 7, surpassing the performance of native melanin. X-ray photoelectron spectroscopy (XPS) was applied to specify the elemental composition of the solid surfaces and the chemical forms of adsorbed metals. Ultrasound-assisted extraction (UAE) significantly enhances adsorption efficacy by facilitating better dispersion and generating a higher surface area, thereby increasing the Number of active binding sites available on MNPs for heavy metal chelation. This mycoremediation-based approach presents a scalable and industrially adaptable solution for water detoxification, offering an advantageous alternative to conventional high-performance membrane technologies with minimal process modifications.</p></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"36 5","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145237589","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Improved hydrolyzed polyacrylamide biodegradation and gel breaking performance of composite bacteria 提高了复合菌对水解聚丙烯酰胺的生物降解和破胶性能。
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-05 DOI: 10.1007/s10532-025-10196-4
Jiqian Wang, Xuanyu Zhang, Han Han, Yuqin Jia, Hai Zhang, Yanhui Jia, Hui Li

Polymer flooding technology enhances crude oil recovery but generates a large amount of wastewater containing hydrolyzed polyacrylamide (HPAM) and HPAM residue in oil reservoirs, which induce serious environmental problems. Effective degradation of HPAM is highly required in oilfields, especially biodegradation technologies. Ten strains of HPAM degrading bacteria have been screened and identified from oilfield wastewater. An optimal HPAM biodegradation system of composite bacteria has been established based on two strains Agrobacterium pusense NMYGYA2 and Stutzerimonas balearica SCE1. The HPAM biodegradation performance of the composite bacteria has been improved through cultivation condition optimization. The highest HPAM removal rate of 81.2% could be achieved at the optimized condition with the addition of 800 mg·L−1 urea, 500 mg·L−1 glucose and 50 mg·L−1 CaCl2. The gel permeation chromatography results showed that the HPAM molecular weight decreased from 3.7 × 106 Da to 1.9 × 105 Da after the composite bacterial degradation. Fourier transform infrared spectroscopy analysis revealed the hydrolysis of NH2 group and the cleavage of C–C bond. Furthermore, the composite bacteria exhibited the ability to break down HPAM gels via biodegradation at temperatures up to 55 °C, indicating that they can be used to treat the blocking in reservoirs with a temperature < 55 °C and ground facilities.

聚合物驱技术提高了原油采收率,但在油藏中产生大量含水解聚丙烯酰胺(HPAM)的废水和HPAM残渣,造成了严重的环境问题。油田对HPAM的有效降解要求很高,尤其是生物降解技术。从油田废水中筛选鉴定了10株HPAM降解菌。以pusense农杆菌NMYGYA2和balearica Stutzerimonas SCE1两株菌株为研究对象,建立了复合菌对HPAM的最佳生物降解体系。通过优化培养条件,提高复合菌对HPAM的生物降解性能。在最佳条件下,尿素800 mg·L-1、葡萄糖500 mg·L-1、CaCl2 50 mg·L-1, HPAM去除率最高,达81.2%。凝胶渗透层析结果表明,复合菌降解后的HPAM分子量由3.7 × 106 Da降至1.9 × 105 Da。傅里叶红外光谱分析显示NH2基团水解,C-C键断裂。此外,复合细菌表现出在高达55°C的温度下通过生物降解分解HPAM凝胶的能力,这表明它们可以用于处理具有温度的储层堵塞
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引用次数: 0
Microbial degradation of diesel fuel as a potential environmental bioremediation 微生物降解柴油作为一种潜在的环境生物修复技术。
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-04 DOI: 10.1007/s10532-025-10194-6
Letícia Beatriz Ueda Melo, Bruna Bacaro Borrego, Louise Hase Gracioso, Elen Aquino Perpetuo

Diesel oil is a fossil fuel widely utilized globally and a significant source of environmental contamination. Its presence poses substantial ecological challenges. Bioremediation emerges as a viable solution for restoring diesel-contaminated environments, contingent upon comprehending the local microbiota. This study employed a metabarcoding technique with a culture-dependent approach to assess the impact of hydrocarbon contamination on soil microbiota. Soil samples were collected from contaminated areas, and microbial diversity was assessed through relative abundance, alpha, and beta diversity analyses. Additionally, bacterial strains isolated from the same area were screened for their ability to degrade hydrocarbons. Four strains, Pseudomonas nitroreducens B32, Pseudomonas koreensis B11, Ralstonia sp. BC2, and Acinetobacter sp. BC3 could degrade up to 38% of the diesel, using it as the sole carbon source. These strains effectively degraded n-alkanes and cyclic alkanes with short and medium chains (C7 to C18). This research enhances the understanding of hydrocarbons’ impacts on soil microbiota and underscores the potential application of microorganisms in bioremediation efforts.

Graphical abstract

柴油是全球广泛使用的化石燃料,也是环境污染的重要来源。它的存在带来了巨大的生态挑战。生物修复是恢复柴油污染环境的一种可行的解决方案,这取决于对当地微生物群的了解。本研究采用元条形码技术和培养依赖方法来评估碳氢化合物污染对土壤微生物群的影响。从污染地区采集土壤样本,通过相对丰度、α和β多样性分析评估微生物多样性。此外,从同一地区分离的细菌菌株进行了筛选,以确定其降解碳氢化合物的能力。以柴油为唯一碳源的4种菌株,硝基还原假单胞菌B32、韩国假单胞菌B11、Ralstonia sp. BC2、Acinetobacter sp. BC3对柴油的降解率可达38%。这些菌株能有效降解短链和中链(C7 ~ C18)的正构烷烃和环构烷烃。该研究提高了对碳氢化合物对土壤微生物群影响的认识,并强调了微生物在生物修复工作中的潜在应用。
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引用次数: 0
Bioremediation potential assessment of oil-degrading bacterial consortium prepared from local bacterial strains and its survival using different porous carriers 本地菌株制备的石油降解菌群的生物修复潜力评价及其在不同多孔载体下的存活率
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-03 DOI: 10.1007/s10532-025-10188-4
Sareh Sadeghianfard Boroojeni, Hossein Motamedi

Oil sludge contains high levels of heavy chain petroleum hydrocarbons and heavy metals that hinder its biodegradation. Hence for successful remediation, selecting potent isolates and construction of efficient bacterial consortium is inevitable. The aim was to achieve bacterial consortium with the ability to tolerate harsh environment of oil sludge and degrade different hydrocarbon fractions of it. For this purpose, native oil-degrading and biosurfactant-producing bacteria were screened from oil tanks bottom sludge and were evaluated for their salt and heavy metal tolerance. Also, oil-degrading potentials of the isolates as well as their consortium were assessed through GC-FID analysis under both static and shaking conditions. The potential of sugarcane vinasse as a low-cost culture medium for large scale culture of the isolates as well as their immobilization and long-term viability on porous carriers including diatomaceous earth, sugarcane bagasse, and biochar were also investigated. The results showed that A. lactucae strain Ib-30 had the highest hydrocarbon degradation (~ 77%) and high level metal resistance. The oil-degrading efficiency of bacterial consortium was lower than that of individual isolates. S. warneri strain Ae1-30 was identified as the most halotolerant and metal-resistant isolate. Vinasse supported the growth of all strains, with C. hisashii strain T1-50 showing the highest proliferation rate. Sugarcane bagasse outperformed other carriers in maintaining bacterial viability over 14 months. Overall, these findings demonstrate the feasibility of scalable, sustainable bioremediation of oil sludge using potent indigenous bacterial resources and effective bio-carriers, offering a promising solution for industrial waste management.

油泥含有高含量的重链石油烃和重金属,阻碍其生物降解。因此,为了成功的修复,选择有效的分离物和构建高效的细菌联合体是不可避免的。目的是使细菌联合体具有耐受油泥恶劣环境的能力,并能降解油泥中不同的烃组分。为此,从油罐底部污泥中筛选了天然的石油降解细菌和生物表面活性剂产生细菌,并评估了它们对盐和重金属的耐受性。同时,通过气相色谱- fid分析,在静态和震动条件下,对分离物及其组合的油降解能力进行了评价。研究了甘蔗蔗渣作为低成本培养基大规模培养菌株的潜力,以及它们在硅藻土、甘蔗渣和生物炭等多孔载体上的固定化和长期生存能力。结果表明,菌株Ib-30具有最高的烃降解率(~ 77%)和较高的金属抗性。菌群对油脂的降解效率低于单个菌株。warneri菌株Ae1-30被鉴定为最耐盐和耐金属的菌株。酒液支持所有菌株的生长,其中C. hisashii菌株T1-50的增殖率最高。甘蔗渣在维持细菌活力超过14个月方面优于其他载体。总的来说,这些发现证明了利用有效的本地细菌资源和有效的生物载体对油泥进行可扩展、可持续的生物修复的可行性,为工业废物管理提供了一个有前途的解决方案。
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引用次数: 0
The mechanism underlying lignite biodegradation by Cupriavidus sp isolated from sludge 污泥中铜毒杆菌降解褐煤的机制
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-03 DOI: 10.1007/s10532-025-10191-9
Yaya Wang, Weilong Cao, Tianyu Zhu, Jiaxuan Li, Damir Nussipov, Kuanysh Tastambek, Xiangrong Liu

Lignite, a low-rank coal, is commonly utilized as a fuel source. However, its high sulfur and ash content can result in the release of harmful substances during combustion. Microbial coal degradation offers a more environmentally friendly alternative to traditional chemical and physical methods of coal treatment. In this study, we obtained a bacterium, named as Cupriavidus sp isolated from activated sludge that exhibits potential for lignite degradation. After identification via 16S rDNA sequencing, the degradation characteristics and mechanisms of strain S4 on lignite from Shanxi, were systematically evaluated. Extracellular enzyme activities of strain S4 were measured, revealing the secretion of lignin peroxidase, manganese peroxidase, laccase, alkaline protease, and amylase, indicating its capacity for multi-enzyme synergistic degradation. Scanning electron microscopy (SEM) observations confirmed that the bacterium could adsorb onto the coal surface. Fourier transform infrared spectroscopy (FTIR) analysis demonstrated a significant increase in free hydroxyl groups on the coal, which facilitates degradation. Gas chromatography-mass spectrometry (GC–MS) and three-dimensional fluorescence spectroscopy analyses of the liquid-phase products showed a notable increase in long-chain alkanes and phenolic compounds in the degradation liquid, along with the detection of humic substances. Further studies indicated that strain S4 mediates initial adsorption through the secretion of extracellular polymers (EPS) rich in proteins and polysaccharides, highlighting the key mechanism of microbial-coal interface interaction. This study provides a theoretical foundation for the development of lignite bioremediation technologies and the resource-based application of functional bacterial strains.

Graphical abstract

褐煤是一种低阶煤,通常用作燃料来源。然而,它的高硫和灰分含量会导致燃烧时释放有害物质。微生物煤降解提供了一种比传统的化学和物理方法更环保的煤处理方法。在这项研究中,我们获得了一种从活性污泥中分离出来的细菌,命名为Cupriavidus sp,它具有褐煤降解的潜力。通过16S rDNA测序鉴定,系统评价了菌株S4对山西褐煤的降解特性及降解机制。测定菌株S4的胞外酶活性,发现其分泌木质素过氧化物酶、锰过氧化物酶、漆酶、碱性蛋白酶和淀粉酶,表明其具有多酶协同降解能力。扫描电镜(SEM)观察证实,细菌可以吸附在煤表面。傅里叶变换红外光谱(FTIR)分析表明,煤上的游离羟基显著增加,有利于降解。液相产物的气相色谱-质谱(GC-MS)和三维荧光光谱分析表明,降解液中长链烷烃和酚类化合物的含量明显增加,腐殖质物质的检测也明显增加。进一步的研究表明,菌株S4通过分泌富含蛋白质和多糖的胞外聚合物(EPS)介导初始吸附,这凸显了微生物-煤界面相互作用的关键机制。该研究为褐煤生物修复技术的发展和功能菌株的资源化应用提供了理论基础。图形抽象
{"title":"The mechanism underlying lignite biodegradation by Cupriavidus sp isolated from sludge","authors":"Yaya Wang,&nbsp;Weilong Cao,&nbsp;Tianyu Zhu,&nbsp;Jiaxuan Li,&nbsp;Damir Nussipov,&nbsp;Kuanysh Tastambek,&nbsp;Xiangrong Liu","doi":"10.1007/s10532-025-10191-9","DOIUrl":"10.1007/s10532-025-10191-9","url":null,"abstract":"<div><p>Lignite, a low-rank coal, is commonly utilized as a fuel source. However, its high sulfur and ash content can result in the release of harmful substances during combustion. Microbial coal degradation offers a more environmentally friendly alternative to traditional chemical and physical methods of coal treatment. In this study, we obtained a bacterium, named as <i>Cupriavidus sp</i> isolated from activated sludge that exhibits potential for lignite degradation. After identification via 16S rDNA sequencing, the degradation characteristics and mechanisms of strain S4 on lignite from Shanxi, were systematically evaluated. Extracellular enzyme activities of strain S4 were measured, revealing the secretion of lignin peroxidase, manganese peroxidase, laccase, alkaline protease, and amylase, indicating its capacity for multi-enzyme synergistic degradation. Scanning electron microscopy (SEM) observations confirmed that the bacterium could adsorb onto the coal surface. Fourier transform infrared spectroscopy (FTIR) analysis demonstrated a significant increase in free hydroxyl groups on the coal, which facilitates degradation. Gas chromatography-mass spectrometry (GC–MS) and three-dimensional fluorescence spectroscopy analyses of the liquid-phase products showed a notable increase in long-chain alkanes and phenolic compounds in the degradation liquid, along with the detection of humic substances. Further studies indicated that strain S4 mediates initial adsorption through the secretion of extracellular polymers (EPS) rich in proteins and polysaccharides, highlighting the key mechanism of microbial-coal interface interaction. This study provides a theoretical foundation for the development of lignite bioremediation technologies and the resource-based application of functional bacterial strains.</p><h3>Graphical abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"36 5","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145210613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biodegradation of heavy petroleum polycyclic aromatic hydrocarbons (PAHs) in polluted soil by biofilm-forming Bacillus tropicus UCB and Pseudomonas aeruginosa SYLI isolated from crude oil-contaminated sludge 原油污染污泥中形成生物膜的热带芽孢杆菌UCB和铜绿假单胞菌SYLI降解土壤中重质石油多环芳烃(PAHs)
IF 3.2 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-30 DOI: 10.1007/s10532-025-10195-5
Uchechukwu Chinwe Nebo, Daniel Juwon Arotupin, Adewale Oluwasogo Olalemi

Crude oil pollution poses a threat to soil ecosystems, particularly in oil-producing regions. This study assessed the biodegradation potential of biofilm-forming Bacillus tropicus UCB and Pseudomonas aeruginosa SYLI isolated from crude oil sludge. Sludge samples were seasonally collected and bacterial counts determined using standard methods while microbial enrichment was conducted in mineral salt medium containing 1% crude oil. Biofilm formation was assessed using Congo red agar and microplate assays. Isolates were identified through cultural, biochemical, and 16S rDNA analysis. Dose–response toxicity test examined degradation across 1%, 3%, 7%, and 10% crude oil concentrations, while PAHs degradation in soil microcosm was analysed using GC–MS. Seasonal variations significantly influenced bacterial populations, with highest count (1.53 × 108 CFU/mL) in the dry season and the least 3.17 × 106 CFU/mL) during wet season. Optical density peaked at 2.86 nm in enrichment III. Results revealed molecular identities of the isolates as B. tropicus UCB and P. aeruginosa SYLI. Both isolates metabolized crude oil from 1 to 10%, with B. tropicus producing 601 mg/L CO₂ with 10% at day 12 and P. aeruginosa yielding 616 mg/L with 1% at day 4. In addition, results showed over 99% removal of low molecular weight PAHs and 75% degradation of high molecular weight PAHs, upon biostimulation. These findings highlight complementary strengths of B. tropicus on high-oil loads and P. aeruginosa rapid initial degradation at lower concentrations. This study suggests that biofilm formation coupled with biostimulation may improve bacterial efficiency in bioremediation. It also represents the first in vitro report on PAHs degradation by Bacillus tropicus.

原油污染对土壤生态系统构成威胁,特别是在产油区。本研究评估了从原油污泥中分离得到的形成生物膜的热带芽孢杆菌UCB和铜绿假单胞菌SYLI的生物降解潜力。按季节收集污泥样品,采用标准方法测定细菌数量,同时在含1%原油的无矿盐培养基中进行微生物富集。用刚果红琼脂和微孔板测定生物膜形成情况。通过培养、生化和16S rDNA分析鉴定分离株。剂量-反应毒性试验检测了1%、3%、7%和10%原油浓度下的降解情况,同时采用气相色谱-质谱分析了土壤微观环境中多环芳烃的降解情况。季节差异显著影响细菌数量,旱季细菌数量最多(1.53 × 108 CFU/mL),雨季细菌数量最少(3.17 × 106 CFU/mL)。富集III的光密度在2.86 nm处达到峰值。结果表明,分离株的分子特征分别为热带双球菌UCB和铜绿假单胞菌SYLI。这两种菌株对原油的代谢率为1 ~ 10%,其中热带双球菌在第12天以10%的速度产生601 mg/L的CO₂,铜绿假单胞菌在第4天以1%的速度产生616 mg/L的CO₂。结果表明,经生物刺激后,低分子量PAHs去除率达99%以上,高分子量PAHs去除率达75%。这些发现强调了热带双球菌在高油负荷下的互补优势和铜绿假单胞菌在低浓度下的快速初始降解。该研究表明生物膜的形成与生物刺激相结合可以提高细菌的生物修复效率。这也是热带芽孢杆菌体外降解多环芳烃的第一篇报道。
{"title":"Biodegradation of heavy petroleum polycyclic aromatic hydrocarbons (PAHs) in polluted soil by biofilm-forming Bacillus tropicus UCB and Pseudomonas aeruginosa SYLI isolated from crude oil-contaminated sludge","authors":"Uchechukwu Chinwe Nebo,&nbsp;Daniel Juwon Arotupin,&nbsp;Adewale Oluwasogo Olalemi","doi":"10.1007/s10532-025-10195-5","DOIUrl":"10.1007/s10532-025-10195-5","url":null,"abstract":"<div><p>Crude oil pollution poses a threat to soil ecosystems, particularly in oil-producing regions. This study assessed the biodegradation potential of biofilm-forming <i>Bacillus tropicus</i> UCB and <i>Pseudomonas aeruginosa</i> SYLI isolated from crude oil sludge. Sludge samples were seasonally collected and bacterial counts determined using standard methods while microbial enrichment was conducted in mineral salt medium containing 1% crude oil. Biofilm formation was assessed using Congo red agar and microplate assays. Isolates were identified through cultural, biochemical, and 16S rDNA analysis. Dose–response toxicity test examined degradation across 1%, 3%, 7%, and 10% crude oil concentrations, while PAHs degradation in soil microcosm was analysed using GC–MS. Seasonal variations significantly influenced bacterial populations, with highest count (1.53 × 10<sup>8</sup> CFU/mL) in the dry season and the least 3.17 × 10<sup>6</sup> CFU/mL) during wet season. Optical density peaked at 2.86 nm in enrichment III. Results revealed molecular identities of the isolates as <i>B. tropicus</i> UCB and <i>P. aeruginosa</i> SYLI. Both isolates metabolized crude oil from 1 to 10%, with <i>B. tropicus</i> producing 601 mg/L CO₂ with 10% at day 12 and <i>P. aeruginosa</i> yielding 616 mg/L with 1% at day 4. In addition, results showed over 99% removal of low molecular weight PAHs and 75% degradation of high molecular weight PAHs, upon biostimulation. These findings highlight complementary strengths of <i>B. tropicus</i> on high-oil loads and <i>P. aeruginosa</i> rapid initial degradation at lower concentrations. This study suggests that biofilm formation coupled with biostimulation may improve bacterial efficiency in bioremediation. It also represents the first in vitro report on PAHs degradation by <i>Bacillus tropicus</i>.</p></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"36 5","pages":""},"PeriodicalIF":3.2,"publicationDate":"2025-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145197554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Biodegradation
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