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Molecular mechanism of flower colour formation in Rhododendron simsii Planchon revealed by integration of microRNAome and RNAomics. 通过整合微RNA组和RNA组学揭示杜鹃花花色形成的分子机制。
IF 2.6 3区 生物学 Q2 ECOLOGY Pub Date : 2024-10-14 eCollection Date: 2024-10-01 DOI: 10.1093/aobpla/plae053
Jun Fu, Chuanchuan Tian, Xuchun Wan, Ruibin Hu, Jiaojun Yu, Jialiang Zhang, Shuzhen Wang

Systems-wide understanding of gene expression profile regulating flower colour formation in Rhododendron simsii Planchon is insufficient. In this research, integration analysis of ribonucleic acid (RNA)omics and microRNAome were performed to reveal the molecular mechanism of flower colour formation in three R. simsii varieties with red, pink and crimson flowers, respectively. Totally, 3129, 5755 and 5295 differentially expressed gene (DEG)s were identified through comparative transcriptome analysis between 'Red variety' and 'Pink variety' (1507 up-regulated and 1622 down-regulated), 'Red variety' and 'Crimson variety' (2148 up-regulated 3607 down-regulated), as well as 'Pink variety' and 'Crimson variety' (2089 up-regulated and 3206 down-regulated), which were involved in processes of 'catalytic activity', 'binding', 'metabolic process' and 'cellular process', as well as pathways of 'metabolic pathways', 'biosynthesis of secondary metabolites', 'plant-pathogen interaction' and 'phenylpropanoid biosynthesis'. A total of 215 miRNAs, containing 153 known miRNAs belonging to 57 families and 62 novel miRNA, were involved in flower colour formation. In particular, 55 miRNAs were significantly differently expressed. Based on miRNA-mRNA regulatory network, ath-miR5658 could affect the synthesis of pelargonidin, cyanidin and delphinidin through downregulating accumulation of anthocyanidin 3-O-glucosyltransferase; ath-miR868-3p could regulate isoflavonoid biosynthesis through downregulating expression of CYP81E1/E7; ath-miR156g regulated the expression of flavonoid 3',5'-hydroxylase; and ath-miR829-5p regulated flavonol synthasein flavonoid biosynthesis process. This research will provide important roles in breeding new varieties with rich flower colour.

对调控杜鹃花颜色形成的基因表达谱的全系统认识不足。本研究对核糖核酸(RNA)组和微RNA组进行了整合分析,以揭示三个花色分别为红色、粉色和深红色的杜鹃花品种花色形成的分子机制。通过对 "红色品种 "和 "粉色品种"(1507 个上调,1622 个下调)、"红色品种 "和 "深红色品种"(2148 个上调,3607 个下调)的转录组进行比较分析,分别发现了 3129 个、5755 个和 5295 个差异表达基因(DEG)、以及'粉红品种'和'深红品种'(上调 2089 个,下调 3206 个),它们参与了'催化活性'、'结合'、'代谢过程'和'细胞过程'等过程,以及'代谢途径'、'次生代谢物的生物合成'、'植物与病原体的相互作用'和'苯丙类生物合成'等途径。共有215个miRNA参与了花色形成,其中153个已知miRNA属于57个科,62个为新miRNA。其中,55 个 miRNA 的表达存在显著差异。根据miRNA-mRNA调控网络,ath-miR5658可通过下调花青素3-O-葡萄糖基转移酶的积累,影响花色素、花青素和花翠素的合成;ath-miR868-3p可通过下调CYP81E1/E7的表达调控异黄酮的生物合成;ath-miR156g可调控黄酮类化合物3',5'-羟化酶的表达;ath-miR829-5p可调控黄酮类化合物生物合成过程中的黄酮醇合成酶。这项研究将为培育花色丰富的新品种发挥重要作用。
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引用次数: 0
Correction to: Morpho-physiological and yield traits for selection of drought tolerant Urochloa grass ecotypes. 更正:选育耐旱乌洛草生态型的形态-生理和产量特征
IF 2.6 3区 生物学 Q2 ECOLOGY Pub Date : 2024-10-05 eCollection Date: 2024-10-01 DOI: 10.1093/aobpla/plae052

[This corrects the article DOI: 10.1093/aobpla/plae034.].

[此处更正了文章 DOI:10.1093/aobpla/plae034]。
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引用次数: 0
Grass leaf structural and stomatal trait responses to climate gradients assessed over the 20th century and across the Great Plains, USA. 美国大平原 20 世纪草叶结构和气孔特征对气候梯度的响应评估。
IF 2.6 3区 生物学 Q2 ECOLOGY Pub Date : 2024-09-26 eCollection Date: 2024-10-01 DOI: 10.1093/aobpla/plae055
Ryan C Donnelly, Jesse B Nippert, Emily R Wedel, Carolyn J Ferguson

Abstract. Using herbarium specimens spanning 133 years and field-collected measurements, we assessed intraspecific trait (leaf structural and stomatal) variability from grass species in the Great Plains of North America. We focused on two widespread, closely related grasses from the tribe Paniceae: Dichanthelium oligosanthes subsp. scribnerianum (C3) and Panicum virgatum (C4). Thirty-one specimens per taxon were sampled from local herbaria from the years 1887 to 2013 to assess trait responses across time to changes in atmospheric [CO2] and growing season precipitation and temperature. In 2021 and 2022, the species were measured from eight grasslands sites to explore how traits vary spatially across natural continental precipitation and temperature gradients. Δ13C increased with atmospheric [CO2] for D. oligosanthes but decreased for P. virgatum, likely linked to increases in precipitation in the study region over the past century. Notably, this is the first record of decreasing Δ13C over time for a C4 species illustrating 13C linkages to climate. As atmospheric [CO2] increased, C:N increased and δ15N decreased for both species and %N decreased for D. oligosanthes. Across a large precipitation gradient, D. oligosanthes leaf traits were more responsive to changes in precipitation than those of P. virgatum. In contrast, only two traits of P. virgatum responded to increases in temperature across a gradient: specific leaf area (increase) and leaf dry matter content (decrease). The only shared significant trend between species was increased C:N with precipitation. Our work demonstrates that these closely related grass species with different photosynthetic pathways exhibited various trait responses across temporal and spatial scales, illustrating the key role of scale of inquiry for forecasting leaf trait responses to future environmental change.

摘要利用标本馆中跨越 133 年的标本和野外采集的测量数据,我们评估了北美大平原禾本科物种的种内性状(叶片结构和气孔)变异性。我们重点研究了两种广泛分布、亲缘关系密切的禾本科植物:Dichanthelium oligosanthes subsp. scribnerianum(C3)和Panicum virgatum(C4)。从 1887 年到 2013 年,每个类群从当地标本馆采样 31 份标本,以评估不同时期对大气[CO2]、生长季降水量和温度变化的性状反应。2021 年和 2022 年,在 8 个草原地点对物种进行了测量,以探索性状在自然大陆降水和温度梯度上的空间变化。D. oligosanthes的Δ13C随大气中[CO2]的增加而增加,但P. virgatum的Δ13C则随大气中[CO2]的减少而减少,这可能与过去一个世纪研究地区降水量的增加有关。值得注意的是,这是 C4 物种Δ13C 随时间推移而下降的首个记录,说明了 13C 与气候的联系。随着大气[CO2]的增加,这两个物种的C:N增加,δ15N减少,而D. oligosanthes的%N减少。在一个较大的降水梯度上,寡毛地黄叶片性状对降水变化的反应要强于毛地黄叶片性状对降水变化的反应。与此相反,在整个梯度上,仅有两种叶片性状对温度升高有反应:比叶面积(增加)和叶片干物质含量(减少)。物种间唯一共同的显著趋势是随着降水量的增加,C:N 也随之增加。我们的研究表明,这些具有不同光合作用途径的近缘禾本科物种在不同的时间和空间尺度上表现出不同的性状反应,说明了调查尺度在预测叶片性状对未来环境变化的反应中的关键作用。
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引用次数: 0
Scaling of cotyledon and primary leaf mass versus area in Acer platanoides seedlings under different light conditions. 不同光照条件下槭树幼苗子叶和主叶质量与面积的比例关系。
IF 2.6 3区 生物学 Q2 ECOLOGY Pub Date : 2024-09-25 eCollection Date: 2024-10-01 DOI: 10.1093/aobpla/plae054
Jinfeng Wang, Bader O Almutairi, Lin Wang, Peijian Shi, Weihao Yao, Ülo Niinemets

Cotyledons play an important role in early seedling establishment. However, relative to primary leaves, cotyledons tend to have a different investment-on-return strategy. To detect the potential differences in the mass (M) versus area (A) scaling relationships between cotyledons and primary leaves in different light environments, a total of 75 Acer platanoides seedlings were sampled at an open site (n = 52; light availability: 74 ± 5 %) and a shaded site (n = 23; light availability: 4.2 ± 1.2 %). Reduced major axis regression protocols were used to fit the M versus A scaling relationships of primary leaves and cotyledons. The bootstrap percentile method was used to test the significance of the differences in the scaling exponents of M versus A between the two light environments. The scaling exponents of cotyledons at both two sites, as well as the primary leaves at the shade site, were greater than unity indicating 'diminishing returns', while the scaling exponent of primary leaves at the open site was smaller than unity indicating 'increasing returns'. The data collectively indicated light-dependent shifts in support investments and differences in the function of cotyledons and primary leaves. Average leaf structural traits displayed significant differences between the two light environments in accordance with the premium in enhancing photosynthetic capacity in high light and light interception in low light. Although the trait responses to light availability were similar for primary leaves and cotyledons, primary leaves were more responsive to light availability, indicating lower plasticity of cotyledons in response to light levels. These results advance our understanding of the roles of cotyledons and primary leaves in the life history of seedlings in different forest light environments.

子叶在早期育苗过程中发挥着重要作用。然而,与主叶相比,子叶往往具有不同的投资回报策略。为了检测子叶和主叶在不同光照环境下的质量(M)与面积(A)比例关系的潜在差异,我们在开阔地(n = 52;光照充足率:74 ± 5 %)和阴暗地(n = 23;光照充足率:4.2 ± 1.2 %)共取样 75 株槭树幼苗。还原主轴回归方案用于拟合主叶和子叶的 M 与 A 的比例关系。采用引导百分位数法检验两种光照环境下 M 与 A 的比例指数差异的显著性。两个地点的子叶以及阴凉地点的主叶的缩放指数均大于统一值,表明 "收益递减",而开阔地点的主叶的缩放指数小于统一值,表明 "收益递增"。这些数据共同表明,支持投资的变化以及子叶和主叶功能的差异与光有关。平均叶片结构特征在两种光照环境下显示出显著差异,这与在强光下提高光合能力和在弱光下提高光拦截能力有关。虽然主叶和子叶对光照的性状反应相似,但主叶对光照的反应更大,这表明子叶对光照水平的可塑性较低。这些结果加深了我们对子叶和主叶在不同森林光照环境下幼苗生活史中的作用的理解。
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引用次数: 0
Automated Seminal Root Angle Measurement with Corrective Annotation 带有校正注释的精根角度自动测量系统
IF 2.9 3区 生物学 Q2 ECOLOGY Pub Date : 2024-09-19 DOI: 10.1093/aobpla/plae046
Abraham George Smith, Marta Malinowska, Anja Karine Ruud, Luc Janss, Lene Krusell, Jens Due Jensen, Torben Asp
Measuring seminal root angle is an important aspect of root phenotyping, yet au- tomated methods are lacking. We introduce SeminalRootAngle, a novel open-source automated method that measures seminal root angles from images. To ensure our method is flexible and user- friendly we build on an established corrective annotation training method for image segmentation. We tested SeminalRootAngle on a heterogeneous dataset of 662 spring barley rhizobox images, which presented challenges in terms of image clarity and root obstruction. Validation of our new auto- mated pipeline against manual measurements yielded a Pearson correlation coefficient of 0.71. We also measure inter-annotator agreement, obtaining a Pearson correlation coefficient of 0.68, indicat- ing that our new pipeline provides similar root angle measurement accuracy to manual approaches. We use our new SeminalRootAngle tool to identify SNPs significantly associated with angle and length, shedding light on the genetic basis of root architecture
测量精根角度是根表型的一个重要方面,但目前还缺乏自动化方法。我们介绍的 SeminalRootAngle 是一种新型开源自动方法,可通过图像测量精根角度。为确保方法的灵活性和用户友好性,我们采用了一种成熟的图像分割校正注释训练方法。我们在由 662 张春大麦根瘤图像组成的异构数据集上测试了 SeminalRootAngle,该数据集在图像清晰度和根部阻塞方面存在挑战。根据人工测量结果对我们新的自动匹配管道进行了验证,得出的皮尔逊相关系数为 0.71。我们还测量了标注者之间的一致性,得到的皮尔逊相关系数为 0.68,表明我们的新管道提供了与人工方法相似的根角度测量精度。我们使用新的 SeminalRootAngle 工具来鉴定与角度和长度显著相关的 SNPs,从而揭示根系结构的遗传基础
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引用次数: 0
Land use to agriculture and planted forests strongly affect the genetic diversity of Baccharis crispa Spreng., a native herb of South America 农业用地和人工林对南美洲原生草本植物 Baccharis crispa Spreng.
IF 2.9 3区 生物学 Q2 ECOLOGY Pub Date : 2024-09-14 DOI: 10.1093/aobpla/plae050
Ricardo Micolino, Felipe Górski, Felipe Liss Zchonski, Rhaniel Nicholas Lisowski Gonçalves, Juliana da Rosa, Paulo Roberto Da-Silva
Human population growth constantly requires an increase in the production of food and products from the timber industry. To meet this demand, agriculture and planted forests are advancing over natural areas. In view of this, it is necessary to know the effects of land use for different purposes (grain production, pastures, planted forests, fruit production, among other uses) on the genetic diversity of populations of native species. This knowledge can assist in land use planning as well as in the development of conservation strategies for native species. In this study, we evaluated the effect of land use for agriculture (mainly for cereal production) and planted forests on the genetic diversity of Baccharis crispa Spreng., a herb native to South America. To achieve our goals, we compared population genetic data obtained with three molecular markers (microsatellites, ISSR [inter-simple sequence repeat] and isoenzymes) with data on land use for agriculture and planted forests from 15 different locations. Our results showed that regardless of the molecular marker used, the greater the use of land for agriculture and planted forests, the lower was the genetic diversity of B. crispa populations. Baccharis crispa is a semi-perennial species that needs at least one year to reach its reproductive period, which is prevented in agricultural areas due to the land being turned over or dissected with herbicides every six months. In the studied regions, the planted forests are of eucalypt and/or pine, which besides being species with a high production of allelopathic substances, produce strong shading and B. crispa is a species that inhabits open grassland that needs high incidence of sunlight for development. The data obtained in our study can assist in the decision-making to use land in order to reconcile the production of supplies for humanity and for the conservation of nature.
人类人口的不断增长要求增加粮食和木材工业产品的产量。为了满足这一需求,农业和人工林的发展速度超过了自然区域。有鉴于此,有必要了解不同用途的土地(粮食生产、牧场、人工林、水果生产等)对本地物种种群遗传多样性的影响。这方面的知识有助于土地利用规划以及本土物种保护战略的制定。在这项研究中,我们评估了农业用地(主要用于谷物生产)和人工林对原产于南美洲的草本植物 Baccharis crispa Spreng.为了实现研究目标,我们将利用三种分子标记(微卫星、ISSR(简单序列间重复)和同工酶)获得的种群遗传数据与 15 个不同地点的农业用地和人工林数据进行了比较。我们的研究结果表明,无论使用哪种分子标记,农业用地和人工林面积越大,酥树蛙种群的遗传多样性就越低。酥树蛙是半多年生物种,至少需要一年的时间才能进入繁殖期,而在农业地区,由于每隔六个月就要翻耕土地或用除草剂除草,因此无法进入繁殖期。在所研究的地区,人工林都是桉树和/或松树,这些树种除了能产生大量的等位物质外,还能产生很强的遮阳效果,而 B. crispa 是一种栖息在开阔草地上的树种,需要大量的阳光才能生长。我们在研究中获得的数据有助于土地使用决策,从而协调人类生产和自然保护之间的关系。
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引用次数: 0
Heatwaves exacerbate pollen limitation through reductions in pollen production and pollen vigour 热浪通过降低花粉产量和花粉活力加剧花粉限制
IF 2.9 3区 生物学 Q2 ECOLOGY Pub Date : 2024-09-13 DOI: 10.1093/aobpla/plae045
Nick M Rosenberger, Jeremy A Hemberger, Neal M Williams
Background and aims Increasingly frequent heat waves threaten the reproduction of flowering plants; compromising the future persistence, adaptive capacity, and dispersal of wild plant populations, and also the yield of fruit-bearing crop plants. Heat damages development of sensitive floral organs and gametes, which inhibits pollen germination, pollen tube growth, and fertilization. However, the role of heat has not been integrated into the framework of pollen quantity and quality limitation and how heat influences the success of cross and self-pollination. Methods We exposed developing flowers to either control temperature (25C:20C) or extreme heat (35C:20C) over 72 hours. We then hand pollinated them with either crossed or self-derived pollen from the same temperature treatment to determine direct and interactive effects of simulated heatwaves on pollen tube growth and resulting seed set. We also collected anthers from virgin flowers to measure heat impacts pollen production. Key results Under cooler control temperatures pollen tube survival of self-derived pollen was approximately 27% lower than that of crossed pollen. Pollen tube survival in heat treated cross-pollinated and heat treated self-pollinated flowers were 71% and 77% lower than cross pollen used control temperatures. These differences in pollen tube survival rate between heat treated cross-pollinated and heat-treated self-pollinated flowers were insignificant. Furthermore, extreme heat reduced seed set by 87%, regardless of pollen origin and also reduced pollen production during flower development by approximately 20%. Conclusions Our results suggest flowers that develop during heatwaves are likely to experience exacerbated pollen quantity and quality limitation driven by changes in pollen production and pollen vigour. Heatwave induced pollen limitation will likely reduce crop yields in agricultural systems, and depress mating and reproduction in wild plant species, the latter of which may hinder the adaptive capacity of plants to a rapidly changing world.
背景和目的 日益频繁的热浪威胁着有花植物的繁殖,损害了野生植物种群未来的生存、适应能力和扩散,也影响了结果作物的产量。热量会破坏敏感花器官和配子的发育,从而抑制花粉萌发、花粉管生长和受精。然而,热量的作用尚未被纳入花粉数量和质量限制的框架,以及热量如何影响异花授粉和自花授粉的成功率。方法 我们将发育中的花朵置于控制温度(25℃:20℃)或极端高温(35℃:20℃)条件下 72 小时。然后,我们用来自相同温度处理的杂交花粉或自花授粉进行人工授粉,以确定模拟热浪对花粉管生长和结实的直接和交互影响。我们还收集了原生花的花药,以测量热对花粉生产的影响。主要结果 在较低的控制温度下,自生花粉的花粉管存活率比杂交花粉低约 27%。经热处理的异花授粉和经热处理的自花授粉花粉管存活率分别比对照温度下的异花授粉低 71% 和 77%。经热处理的异花授粉花和经热处理的自花授粉花的花粉管存活率差异不大。此外,无论花粉来源如何,极端高温都会使结实率降低 87%,并使花朵发育过程中的花粉产量降低约 20%。结论 我们的研究结果表明,在热浪中发育的花朵可能会因花粉产量和花粉活力的变化而加剧花粉数量和质量的限制。热浪引起的花粉限制可能会降低农业系统中的作物产量,并抑制野生植物物种的交配和繁殖,后者可能会阻碍植物对快速变化的世界的适应能力。
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引用次数: 0
Development of a Root-Zone Temperature Control System Using Air Source Heat Pump and Its Impact on the Growth and Yield of Paprika 利用空气源热泵开发根区温度控制系统及其对辣椒生长和产量的影响
IF 2.9 3区 生物学 Q2 ECOLOGY Pub Date : 2024-09-13 DOI: 10.1093/aobpla/plae047
Jeesang Myung, Meiyan Cui, Byungkwan Lee, Hyein Lee, Jaewook Shin, Changhoo Chun
By developing and implementing a local temperature control system, such as a root zone, with a high energy efficiency heat source, we can ensure both yield and energy efficiency against extreme temperatures. This system, designed with practicality in mind, has a remarkably positive impact on paprika plants' growth and yield in greenhouse cultivation. In the summer season, paprika plants were grown with no cooling (NC), nutrient solution cooling (NSC), and the combination of NSC and substrate surround cooling (NSC+SSC). In the case of SSC, cooled water circulated through the pipe surrounding the substrate to lower the substrate temperature. The cooling system maintains the nutrient solution temperature at 18oC and the circulating water temperature at the system in the winter season; the paprika plants were grown with no heating (NH), nutrient solution heating (NSH), and the combination of NSH and substrate surround heating (NSH+SSH). The heating system maintains the nutrient solution temperature at 25oC and the circulating water temperature at 30oC. In the summer, the root fresh and dry weights, stem fresh and dry weights, stem length, and node number were increased in the NSC+SSC. In the winter season, the stem fresh and dry weights, leaf area, and leaf fresh and dry weights were increased in the NSH+SSH. In both seasons, root-zone temperature control increased the fruit quality and yield. The result indicates that this easy-to-install root-zone temperature control system can be applied to the commercial greenhouse to secure paprika growth and yield in year-round cultivation.
通过开发和实施具有高能效热源的局部温度控制系统(例如根区),我们可以在极端温度下确保产量和能效。这一系统的设计考虑到了实用性,对温室栽培中红辣椒植株的生长和产量产生了显著的积极影响。在夏季,采用不降温(NC)、营养液降温(NSC)以及营养液降温与基质环绕降温相结合(NSC+SSC)的方式栽培红辣椒植株。在 SSC 的情况下,冷却水通过基质周围的管道循环,以降低基质温度。在冬季,冷却系统将营养液温度保持在 18 摄氏度,循环水温度保持在系统温度;在不加热(NH)、营养液加热(NSH)以及 NSH 和基质环绕加热相结合(NSH+SSH)的情况下种植辣椒。加热系统将营养液温度保持在 25 摄氏度,循环水温度保持在 30 摄氏度。在夏季,NSC+SSC 的根鲜重和干重、茎鲜重和干重、茎长和节数都有所增加。在冬季,NSH+SSH 增加了茎的鲜重和干重、叶面积和叶片的鲜重和干重。在这两个季节,根区温度控制都提高了果实质量和产量。结果表明,这种易于安装的根区温度控制系统可应用于商业温室,以确保辣椒在全年栽培中的生长和产量。
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引用次数: 0
Symbiotic nitrogen fixation reduces belowground biomass carbon costs of nitrogen acquisition under low, but not high, nitrogen availability 共生固氮降低了低氮供应量(而非高氮供应量)条件下氮获取的地下生物量碳成本
IF 2.9 3区 生物学 Q2 ECOLOGY Pub Date : 2024-09-12 DOI: 10.1093/aobpla/plae051
Evan A Perkowski, Joseph Terrones, Hannah L German, Nicholas G Smith
Many plant species form symbiotic associations with nitrogen-fixing bacteria. Through this symbiosis, plants allocate photosynthate belowground to the bacteria in exchange for nitrogen fixed from the atmosphere. This symbiosis forms an important link between carbon and nitrogen cycles in many ecosystems. However, the economics of this relationship under soil nitrogen availability gradients is not well understood, as plant investment toward symbiotic nitrogen fixation tends to decrease with increasing soil nitrogen availability. Here, we used a manipulation experiment to examine how costs of nitrogen acquisition vary under a factorial combination of soil nitrogen availability and inoculation with Bradyrhizobium japonicum in Glycine max L. (Merr.). We found that inoculation decreased belowground biomass carbon costs to acquire nitrogen and increased total leaf area and total biomass, but these patterns were only observed under low fertilization and were the result of increased plant nitrogen uptake and no change in belowground carbon allocation. These results suggest that symbioses with nitrogen-fixing bacteria reduce carbon costs of nitrogen acquisition by increasing plant nitrogen uptake, but only when soil nitrogen is low, allowing individuals to increase nitrogen allocation to structures that support aboveground growth. This pattern may help explain the prevalence of plants capable of forming these associations in less fertile soils and provides useful insight into understanding the role of nutrient acquisition strategy on plant nitrogen uptake across nitrogen availability gradients.
许多植物物种与固氮细菌形成共生关系。通过这种共生关系,植物将地下的光合作用分配给细菌,以换取从大气中固定的氮。这种共生关系是许多生态系统中碳和氮循环之间的重要纽带。然而,由于植物对共生固氮的投入往往会随着土壤氮素供应量的增加而减少,因此人们对土壤氮素供应梯度下这种关系的经济性还不甚了解。在这里,我们使用了一个操作实验来研究在土壤氮可用性和接种日本农杆菌(Bradyrhizobium japonicum)的因子组合下,最大甘蓝(Glycine max L. (Merr.))获得氮的成本是如何变化的。我们发现,接种降低了地下生物量获取氮的碳成本,增加了总叶面积和总生物量,但这些模式仅在低施肥量下观察到,是植物氮吸收增加的结果,地下碳分配没有变化。这些结果表明,与固氮菌共生可通过增加植物对氮的吸收来降低获取氮的碳成本,但只有在土壤氮含量较低时才会出现这种情况,从而使个体能够增加对支持地上部生长的结构的氮分配。这种模式可能有助于解释为什么在肥力较低的土壤中普遍存在能够形成这种共生关系的植物,并为理解养分获取策略在氮供应梯度上对植物氮吸收的作用提供了有益的启示。
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引用次数: 0
Genome-wide analysis of flavonoid biosynthetic genes in Musaceae (Ensete, Musella, and Musa species) reveals amplification of flavonoid 3’,5’-hydroxylase 对麝香植物(Ensete、Musella 和 Musa 种)中黄酮类化合物生物合成基因的全基因组分析发现了黄酮类化合物 3',5'-羟化酶的扩增情况
IF 2.9 3区 生物学 Q2 ECOLOGY Pub Date : 2024-09-10 DOI: 10.1093/aobpla/plae049
Dongli Cui, Gui Xiong, Lyuhan Ye, Richard Gornall, Ziwei Wang, Pat Heslop-Harrison, Qing Liu
Flavonoids in Musaceae are involved in pigmentation and stress responses, including cold resistance, and are a component of the healthy human diet. Identification and analysis of the sequence and copy number of flavonoid biosynthetic genes are valuable for understanding the nature and diversity of flavonoid evolution in Musaceae species. In this study, we identified 71 to 80 flavonoid biosynthetic genes in chromosome-scale genome sequence assemblies of Musaceae, including those of Ensete glaucum, Musella lasiocarpa, Musa beccarii, M. acuminata, M. balbisiana, and M. schizocarpa, checking annotations with BLAST and determining the presence of conserved domains. The number of genes increased through segmental duplication and tandem duplication. Orthologues of both structural and regulatory genes in the flavonoid biosynthetic pathway are highly conserved across Musaceae. The flavonoid 3’,5’-hydroxylase gene F3’5’H was amplified in Musaceae and ginger compared with grasses (rice, Brachypodium, Avena longiglumis, and sorghum). One group of genes from this gene family amplified near the centromere of chromosome 2 in the x = 11 Musaceae species. Flavonoid biosynthetic genes displayed few consistent responses in the yellow and red bracts of Musella lasiocarpa when subjected to low temperatures. The expression levels of MlDFR2/3 (dihydroflavonol reductase) increased while MlLAR (leucoanthocyanidin reductase) was reduced by half. Overall, the results establish the range of diversity in both sequence and copy number of flavonoid biosynthetic genes during evolution of Musaceae. The combination of allelic variants of genes, changes in their copy numbers, and variation in transcription factors with the modulation of expression under cold treatments and between genotypes with contrasting bract-colours suggests the variation may be exploited in plant breeding programmes, particularly for improvement of stress-resistance in the banana crop.
麝香植物中的类黄酮参与色素沉着和抗寒等应激反应,是人类健康饮食的组成部分。鉴定和分析类黄酮生物合成基因的序列和拷贝数对于了解麝香植物类黄酮进化的性质和多样性很有价值。在这项研究中,我们在麝香科植物(包括Ensete glaucum、Musella lasiocarpa、Musa beccarii、M. acuminata、M. balbisiana和M. schizocarpa)的染色体级基因组序列组装中鉴定了71至80个黄酮类生物合成基因,用BLAST检查了注释并确定了保守结构域的存在。通过节段重复和串联重复,基因数量有所增加。黄酮类化合物生物合成途径中的结构基因和调控基因的同源物在麝香草科植物中高度保守。黄酮类化合物 3',5'-羟化酶基因 F3'5'H 在麝香草和生姜与禾本科植物(水稻、禾本科植物、莜麦和高粱)中都有扩增。在 x = 11 个麝香科物种中,该基因家族的一组基因在 2 号染色体中心点附近扩增。在低温条件下,麝香草黄苞片和红苞片中的黄酮类生物合成基因几乎没有一致的反应。MlDFR2/3(二氢黄酮醇还原酶)的表达水平有所增加,而MlLAR(白花青素还原酶)的表达水平则降低了一半。总之,研究结果确定了麝香草科植物进化过程中黄酮类生物合成基因序列和拷贝数的多样性范围。基因的等位基因变异、基因拷贝数的变化、转录因子的变化以及在冷处理条件下和苞片颜色对比强烈的基因型之间的表达调控等综合因素表明,这些变异可用于植物育种计划,特别是提高香蕉作物的抗逆性。
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