The Andaman Islands harbor a unique biodiversity that is distinct from Asian mainland India and Southeast Asia due to geographical isolation, high endemism, and varied ecological conditions. Among the diverse fauna, species of the genus Junonia are widely distributed across various habitats; however, their genetic diversity has not been explored using molecular approaches in this region. The present study aimed to generate mitochondrial COI gene DNA barcodes for Junonia species from the Andaman Islands on a broader scale. A total of 74 specimens, morphologically identified as four different species were analyzed. The intraspecific divergence ranged from 0.003 to 0.017, while interspecific nucleotide divergence among the four species ranged from 0.044 to 0.095. The maximum divergence (0.095) was observed between Junonia lemonias and Junonia atlites, and the lowest (0.044) between J. lemonias and Junonia hierta. The Phylogenetic tree was constructed using both Neighbor-Joining (NJ) and Maximum Likelihood (ML) methods which displayed nearly identical topologies, with COI sequences clustering cohesively by species. This study represents the first molecular documentation of Junonia genetic diversity in the Andaman Islands, establishing a critical baseline for future taxonomic and evolutionary investigations.
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