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Systems to model the personalized aspects of microbiome health and gut dysbiosis 对微生物组健康和肠道微生态失调的个性化方面进行建模的系统
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1016/j.mam.2022.101115
Cristina Matthewman , Alexandra Narin , Hannah Huston , Christopher Edward Hopkins

The human gut microbiome is a complex and dynamic microbial entity that interacts with the environment and other parts of the body including the brain, heart, liver, and immune system. These multisystem interactions are highly conserved from invertebrates to humans, however the complexity and diversity of human microbiota compositions often yield a context that is unique to each individual. Yet commonalities remain across species, where a healthy gut microbiome will be rich in symbiotic commensal biota while an unhealthy gut microbiota will be experiencing abnormal blooms of pathobiont bacteria. In this review we discuss how omics technologies can be applied in a personalized approach to understand the microbial crosstalk and microbial-host interactions that affect the delicate balance between eubiosis and dysbiosis in an individual gut microbiome. We further highlight the strengths of model organisms in identifying and characterizing these conserved synergistic and/or pathogenic host-microbe interactions. And finally, we touch upon the growing area of personalized therapeutic interventions targeting gut microbiome.

人类肠道微生物组是一个复杂而动态的微生物实体,与环境和身体其他部位(包括大脑、心脏、肝脏和免疫系统)相互作用。从无脊椎动物到人类,这些多系统相互作用都是高度保守的,然而人类微生物群组成的复杂性和多样性往往会产生每个个体独有的背景。然而,不同物种之间仍然存在共性,健康的肠道微生物组将富含共生共生生物群,而不健康的肠道菌群将经历致病细菌的异常繁殖。在这篇综述中,我们讨论了如何将组学技术应用于个性化方法中,以了解微生物串扰和微生物-宿主相互作用,这些相互作用影响单个肠道微生物组中生态失调和微生态失调之间的微妙平衡。我们进一步强调了模式生物在识别和表征这些保守的协同和/或致病性宿主-微生物相互作用方面的优势。最后,我们谈到了针对肠道微生物组的个性化治疗干预的日益增长的领域。
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引用次数: 7
The evolving regulatory landscape in regenerative medicine 再生医学监管格局的演变
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1016/j.mam.2022.101138
Danielle J. Beetler , Damian N. Di Florio , Ethan W. Law , Chris M. Groen , Anthony J. Windebank , Quinn P. Peterson , DeLisa Fairweather

Regenerative medicine as a field has emerged as a new component of modern medicine and medical research that encompasses a wide range of products including cellular and acellular therapies. As this new field emerged, regulatory agencies like the Food and Drug Administration (FDA) rapidly adapted existing regulatory frameworks to address the transplantation, gene therapy, cell-based therapeutics, and acellular biologics that fall under the broader regenerative medicine umbrella. Where it has not been possible to modify existing regulation and processes, entirely new frameworks have been generated with the intention of providing flexible, forward-facing systems to regulate this rapidly growing field. This review discusses the current state of FDA regulatory affairs in the context of stem cells and extracellular vesicles by highlighting gaps in the current regulatory system and then discussing where regulatory science in regenerative medicine may be headed based on these gaps and the FDA's historical ability to deal with emerging fields. Lastly, we utilize case studies in stem cell and acellular based treatments to demonstrate how regulatory science has evolved in regenerative medicine and highlight the ongoing clinical efforts and challenges of these therapies.

再生医学作为一个领域,已成为现代医学和医学研究的一个新组成部分,涵盖了包括细胞和无细胞疗法在内的广泛产品。随着这一新领域的出现,美国食品药品监督管理局(FDA)等监管机构迅速调整了现有的监管框架,以应对更广泛的再生医学保护伞下的移植、基因治疗、细胞治疗和无细胞生物制品。在无法修改现有监管和程序的地方,已经制定了全新的框架,旨在提供灵活、前瞻性的系统来监管这一快速增长的领域。这篇综述讨论了美国食品药品监督管理局在干细胞和细胞外囊泡方面的监管事务的现状,重点介绍了当前监管系统中的差距,然后根据这些差距和美国食品药品管理局处理新兴领域的历史能力,讨论了再生医学监管科学的发展方向。最后,我们利用干细胞和脱细胞治疗的案例研究来证明再生医学中的调节科学是如何发展的,并强调这些疗法正在进行的临床努力和挑战。
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引用次数: 5
Phenotypic screening models for rapid diagnosis of genetic variants and discovery of personalized therapeutics 快速诊断遗传变异和发现个性化治疗方法的表型筛选模型
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1016/j.mam.2022.101153
Christopher E. Hopkins , Trisha Brock , Thomas R. Caulfield , Matthew Bainbridge

Precision medicine strives for highly individualized treatments for disease under the notion that each individual's unique genetic makeup and environmental exposures imprints upon them not only a disposition to illness, but also an optimal therapeutic approach. In the realm of rare disorders, genetic predisposition is often the predominant mechanism driving disease presentation. For such, mostly, monogenic disorders, a causal gene to phenotype association is likely. As a result, it becomes important to query the patient's genome for the presence of pathogenic variations that are likely to cause the disease. Determining whether a variant is pathogenic or not is critical to these analyses and can be challenging, as many disease-causing variants are novel and, ergo, have no available functional data to help categorize them. This problem is exacerbated by the need for rapid evaluation of pathogenicity, since many genetic diseases present in young children who will experience increased morbidity and mortality without rapid diagnosis and therapeutics. Here, we discuss the utility of animal models, with a focus mainly on C. elegans, as a contrast to tissue culture and in silico approaches, with emphasis on how these systems are used in determining pathogenicity of variants with uncertain significance and then used to screen for novel therapeutics.

精准医学致力于高度个性化的疾病治疗,因为每个人独特的基因构成和环境暴露不仅会影响他们对疾病的倾向,还会影响他们的最佳治疗方法。在罕见疾病领域,遗传易感性往往是导致疾病表现的主要机制。对于这种主要是单基因疾病,很可能是基因与表型之间的因果关系。因此,询问患者基因组中是否存在可能导致疾病的致病性变异变得很重要。确定一种变体是否具有致病性对这些分析至关重要,而且可能具有挑战性,因为许多致病变体都是新的,因此没有可用的功能数据来帮助对其进行分类。快速评估致病性的必要性加剧了这一问题,因为许多遗传疾病存在于幼儿身上,如果没有快速诊断和治疗,他们的发病率和死亡率将增加。在这里,我们讨论了动物模型的实用性,主要关注秀丽隐杆线虫,与组织培养和计算机方法形成对比,重点讨论了如何使用这些系统来确定具有不确定意义的变体的致病性,然后用于筛选新的治疗方法。
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引用次数: 5
Extracellular vesicles in the glioblastoma microenvironment: A diagnostic and therapeutic perspective 胶质母细胞瘤微环境中的细胞外小泡:诊断和治疗前景
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1016/j.mam.2022.101167
Marissa N. Russo , Lauren A. Whaley , Emily S. Norton , Natanael Zarco , Hugo Guerrero-Cázares

Glioblastoma (GBM), is the most malignant form of gliomas and the most common and lethal primary brain tumor in adults. Conventional cancer treatments have limited to no efficacy on GBM. GBM cells respond and adapt to the surrounding brain parenchyma known as tumor microenvironment (TME) to promote tumor preservation. Among specific TME, there are 3 of particular interest for GBM biology: the perivascular niche, the subventricular zone neurogenic niche, and the immune microenvironment. GBM cells and TME cells present a reciprocal feedback which results in tumor maintenance. One way that these cells can communicate is through extracellular vesicles. These vesicles include exosomes and microvesicles that have the ability to carry both cancerous and non-cancerous cargo, such as miRNA, RNA, proteins, lipids, and DNA. In this review we will discuss the booming topic that is extracellular vesicles, and how they have the novelty to be a diagnostic and targetable vehicle for GBM.

胶质母细胞瘤(GBM)是胶质瘤中最恶性的一种,也是成人最常见、最致命的原发性脑肿瘤。传统的癌症治疗对GBM的疗效有限。GBM细胞对被称为肿瘤微环境(TME)的周围脑实质做出反应并适应,以促进肿瘤的保存。在特定的TME中,有3个对GBM生物学特别感兴趣:血管周围生态位、室下区神经源性生态位和免疫微环境。GBM细胞和TME细胞呈现相互反馈,导致肿瘤维持。这些细胞通讯的一种方式是通过细胞外小泡。这些囊泡包括外泌体和微泡,它们能够携带癌性和非癌性货物,如miRNA、RNA、蛋白质、脂质和DNA。在这篇综述中,我们将讨论细胞外小泡这一蓬勃发展的话题,以及它们如何具有作为GBM诊断和靶向载体的新颖性。
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引用次数: 1
Non-canonical roles of Siglecs: Beyond sialic acid-binding and immune cell modulation Siglecs的非规范作用:超越唾液酸结合和免疫细胞调节
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-01 DOI: 10.1016/j.mam.2022.101145
Shoib Sarwar Siddiqui

Siglecs (Sialic acid-binding immunoglobulin-type lectins) are I-type lectins that bind with sialic acid ligands (Sia). Most are expressed on the surface of leukocytes and are involved in immune regulation and possess immune tyrosine-based inhibitory motif (ITIM) in the intracellular domain, thus leading to inhibition of the immune response. This signaling is instrumental in maintaining quiescence under physiological conditions and acts as a brake for inflammatory cascades. By contrast, activating Siglecs carry positively charged residues in the transmembrane domain and interact with immune tyrosine-based activating motif (ITAM)-containing proteins, a DNAX-activating protein of 10–12 kDa (DAP10/12), to activate immune cells. There are various characteristics of Siglecs that do not fit within the classification of Siglec receptors as being either inhibitory or activating in nature. This review focuses on elucidating the non-canonical functions and interactions of Siglec receptors, which include Sia-independent interactions such as protein-protein interactions and interactions with lipids or other sugars. This review also summarizes Siglec expression and function on non-immune cells, and non-classical signaling of the receptor. Thus, this review will be beneficial to researchers interested in the field of Siglecs and sialic acid biology.

唾液酸结合免疫球蛋白型凝集素是与唾液酸配体(Sia)结合的I型凝集素。大多数在白细胞表面表达,参与免疫调节,并在细胞内结构域中具有基于免疫酪氨酸的抑制基序(ITIM),从而导致免疫反应的抑制。这种信号传导有助于在生理条件下保持静止,并起到炎症级联反应的刹车作用。相反,激活Siglecs在跨膜结构域中携带带正电的残基,并与含有免疫酪氨酸的激活基序(ITAM)的蛋白质(一种10–12 kDa的DNAX激活蛋白(DAP10/12))相互作用,以激活免疫细胞。Siglec的各种特征不符合Siglec受体的分类,即在自然界中具有抑制性或激活性。这篇综述的重点是阐明Siglec受体的非经典功能和相互作用,包括Sia独立的相互作用,如蛋白质-蛋白质相互作用以及与脂质或其他糖的相互作用。本文还综述了Siglec在非免疫细胞上的表达和功能,以及受体的非经典信号传导。因此,这篇综述将有利于对Siglecs和唾液酸生物学领域感兴趣的研究人员。
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引用次数: 4
CD33 isoforms in microglia and Alzheimer's disease: Friend and foe 小胶质细胞中CD33亚型与阿尔茨海默病:朋友与敌人
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-01 DOI: 10.1016/j.mam.2022.101111
Ghazaleh Eskandari-Sedighi , Jaesoo Jung , Matthew S. Macauley

Alzheimer's disease (AD) is the most common form of neurodegenerative disease and is considered the main cause of dementia worldwide. Genome-wide association studies combined with integrated analysis of functional datasets support a critical role for microglia in AD pathogenesis, identifying them as important potential therapeutic targets. The ability of immunomodulatory receptors on microglia to control the response to pathogenic amyloid-β aggregates has gained significant interest. Siglec-3, also known as CD33, is one of these immunomodulatory receptors expressed on microglia that has been identified as an AD susceptibility factor. Here, we review recent advances made in understanding the multifaceted roles that CD33 plays in microglia with emphasis on two human-specific CD33 isoforms that differentially correlate with AD susceptibility. We also describe several different therapeutic approaches for targeting CD33 that have been advanced for the purpose of skewing microglial cell responses.

阿尔茨海默病(AD)是最常见的神经退行性疾病,被认为是全世界痴呆症的主要原因。全基因组关联研究与功能数据集的综合分析相结合,支持小胶质细胞在AD发病机制中的关键作用,将其确定为重要的潜在治疗靶点。小胶质细胞上的免疫调节受体控制对致病性淀粉样蛋白-β聚集体反应的能力已引起人们的极大兴趣。Siglec-3,也称为CD33,是小胶质细胞上表达的免疫调节受体之一,已被确定为AD易感性因子。在这里,我们回顾了在理解CD33在小胶质细胞中发挥的多方面作用方面取得的最新进展,重点是与AD易感性不同相关的两种人类特异性CD33亚型。我们还描述了几种不同的靶向CD33的治疗方法,这些方法已被用于偏斜小胶质细胞反应。
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引用次数: 12
Human sialoglycan ligands for immune inhibitory Siglecs 免疫抑制性Siglecs的人唾液酸聚糖配体
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-01 DOI: 10.1016/j.mam.2022.101110
Anabel Gonzalez-Gil , T. August Li , Jean Kim , Ronald L. Schnaar

Most human Siglecs (sialic acid binding immunoglobulin-like lectins) are expressed on the surfaces of overlapping subsets of immune cells, and most carry immunoreceptor tyrosine-based inhibitory domains on their intracellular motifs. When immune inhibitory Siglecs bind to complementary sialoglycans in their local milieu, engagement results in down-regulation of the immune response. Siglecs have come under scrutiny as potential targets of drugs to modify the course of inflammation (and other immune system responses) and as immune checkpoints in cancer. Human Siglecs bind to endogenous human sialoglycans. The identities of these endogenous human sialoglycan immune regulators are beginning to emerge, along with some general principles that may inform future investigations in this area. Among these principles is the finding that a cell type or tissue may express a ligand for a particular Siglec on a single or a very few of its sialoglycoproteins. The selected protein carrier for a particular Siglec may be unique in a certain tissue, but vary tissue-to-tissue. The binding affinity of endogenous Siglec ligands may surpass that of its binding to synthetic sialoglycan determinants by several orders of magnitude. Since most human Siglecs have evolved rapidly and are distinct from those in most other mammals, this review describes endogenous human Siglec ligands for several human immune inhibitory Siglecs. As the identities of these immune regulatory sialoglycan ligands are defined, additional opportunities to target Siglecs therapeutically may emerge.

大多数人Siglecs(唾液酸结合免疫球蛋白样凝集素)在免疫细胞重叠亚群的表面表达,大多数在其细胞内基序上携带基于免疫受体酪氨酸的抑制结构域。当免疫抑制性Siglec在其局部环境中与互补唾液酸聚糖结合时,结合会导致免疫反应的下调。Siglecs作为改变炎症过程(和其他免疫系统反应)的药物的潜在靶点,以及作为癌症的免疫检查点,受到了密切关注。人类Siglec与内源性人类唾液酸聚糖结合。这些内源性人类唾液酸聚糖免疫调节因子的身份开始显现,以及一些可能为该领域未来研究提供信息的一般原理。在这些原理中,发现一种细胞类型或组织可以在单个或极少数唾液酸糖蛋白上表达特定Siglec的配体。用于特定Siglec的所选蛋白质载体在特定组织中可能是独特的,但不同组织不同。内源性Siglec配体的结合亲和力可能超过其与合成唾液酸聚糖决定簇的结合亲和力几个数量级。由于大多数人类Siglec进化迅速,与大多数其他哺乳动物的Siglec不同,本综述描述了几种人类免疫抑制性Siglec的内源性人类Siglec配体。随着这些免疫调节唾液酸聚糖配体的身份的确定,可能会出现治疗靶向Siglecs的额外机会。
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引用次数: 6
Siglec receptors as new immune checkpoints in cancer Siglec受体作为癌症新的免疫检查点
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-01 DOI: 10.1016/j.mam.2022.101112
Michal A. Stanczak , Heinz Läubli

Cancer immunotherapy in the form of immune checkpoint inhibitors and cellular therapies has improved the treatment and prognosis of many patients. Nevertheless, most cancers are still resistant to currently approved cancer immunotherapies. New approaches and rational combinations are needed to overcome these resistances. There is emerging evidence that Siglec receptors could be regarded as new immune checkpoints and targets for cancer immunotherapy. In this review, we summarize the experimental evidence supporting Siglec receptors as new immune checkpoints in cancer and discuss their mechanisms of action, as well as current efforts to target Siglec receptors and their interactions with sialoglycan Siglec-ligands.

癌症免疫疗法以免疫检查点抑制剂和细胞疗法的形式改善了许多患者的治疗和预后。尽管如此,大多数癌症仍然对目前批准的癌症免疫疗法具有耐药性。需要新的方法和合理的组合来克服这些阻力。有新的证据表明,Siglec受体可以被视为癌症免疫疗法的新免疫检查点和靶点。在这篇综述中,我们总结了支持Siglec受体作为癌症中新的免疫检查点的实验证据,并讨论了它们的作用机制,以及目前靶向Siglec接收器的努力及其与唾液多糖Siglec-ligands的相互作用。
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引用次数: 18
Siglecs in allergy and asthma Siglecs与过敏和哮喘
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-01 DOI: 10.1016/j.mam.2022.101104
Bruce S. Bochner , Jeremy A. O'Sullivan , Alan T. Chang , Bradford A. Youngblood

The term “allergic diseases” encompasses several common, IgE-mediated conditions that range from being annoying to those that are life-threatening. Available treatments include active avoidance of the instigating allergen and the use of a variety of oral, inhaled, intranasal, intraocular and injected agents. While most individuals with allergies do well with existing therapies, there are still unmet therapeutic needs. Siglecs (sialic acid-binding, immunoglobulin-like lectins) are a family of single-pass transmembrane I-type lectins found on various subsets of cells, especially those of the immune system. All Siglecs have extracellular domains recognizing sialoside ligands, and most contain cytoplasmic domains with inhibitory signaling activity. This review focuses on Siglecs that likely play a role in regulating allergic and asthmatic responses, and how specific Siglecs, expressed on cells such as eosinophils and mast cells, are being targeted for therapeutic benefit.

“过敏性疾病”一词包括几种常见的IgE介导的疾病,从令人讨厌到危及生命。可用的治疗方法包括积极避免引发过敏原,以及使用各种口服、吸入、鼻内、眼内和注射制剂。尽管大多数过敏患者在现有治疗中表现良好,但仍有未满足的治疗需求。Siglecs(唾液酸结合,免疫球蛋白样凝集素)是一个在各种细胞亚群,特别是免疫系统的细胞亚群上发现的单程跨膜I型凝集素家族。所有Siglec都具有识别唾液糖苷配体的胞外结构域,并且大多数含有具有抑制信号活性的细胞质结构域。这篇综述的重点是可能在调节过敏和哮喘反应中发挥作用的Siglecs,以及在嗜酸性粒细胞和肥大细胞等细胞上表达的特异性Siglecs如何被靶向用于治疗。
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引用次数: 7
Discovery, classification, evolution and diversity of Siglecs Siglecs的发现、分类、进化和多样性
IF 10.6 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-01 DOI: 10.1016/j.mam.2022.101117
Takashi Angata , Ajit Varki

Immunoglobulin (Ig) superfamily proteins play diverse roles in vertebrates, including regulation of cellular responses by sensing endogenous or exogenous ligands. Siglecs are a family of glycan-recognizing proteins belonging to the Ig superfamily (i.e., I-type lectins). Siglecs are expressed on various leukocyte types and are involved in diverse aspects of immunity, including the regulation of inflammatory responses, leukocyte proliferation, host–microbe interaction, and cancer immunity. Sialoadhesin/Siglec-1, CD22/Siglec-2, and myelin-associated glycoprotein/Siglec-4 were among the first to be characterized as members of the Siglec family, and along with Siglec-15, they are relatively well-conserved among tetrapods. Conversely, CD33/Siglec-3-related Siglecs (CD33rSiglecs, so named as they show high sequence similarity with CD33/Siglec-3) are encoded in a gene cluster with many interspecies variations and even intraspecies variations within some lineages such as humans. The rapid evolution of CD33rSiglecs expressed on leukocytes involved in innate immunity likely reflects the selective pressure by pathogens that interact and possibly exploit these Siglecs. Human Siglecs have several additional unique and/or polymorphic properties as compared with closely related great apes, changes possibly related to the loss of the sialic acid Neu5Gc, another distinctly human event in sialobiology. Multiple changes in human CD33rSiglecs compared to great apes include many examples of human-specific expression in non-immune cells, coinciding with human-specific diseases involving such cell types. Some Siglec gene polymorphisms have dual consequences—beneficial in a situation but detrimental in another. The association of human Siglec gene polymorphisms with several infectious and non-infectious diseases likely reflects the ongoing competition between the host and microbial pathogens.

免疫球蛋白(Ig)超家族蛋白在脊椎动物中发挥着不同的作用,包括通过感应内源性或外源性配体来调节细胞反应。Siglecs是属于Ig超家族的一个聚糖识别蛋白家族(即i型凝集素)。Siglecs在各种类型的白细胞上表达,并参与免疫的各个方面,包括炎症反应的调节、白细胞增殖、宿主-微生物相互作用和癌症免疫。Sialoadhesin/Siglec-1、CD22/Siglec-2和髓鞘相关糖蛋白/Siglec-4是最早被鉴定为Siglec家族成员的,与Siglec-15一起,它们在四足动物中相对保守。相反,CD33/Siglec-3相关的Siglecs(CD33rSiglecs,因其与CD33/Siglec-3显示出高度序列相似性而得名)被编码在一个基因簇中,该基因簇在一些谱系(如人类)中具有许多种间变异,甚至种内变异。参与先天免疫的白细胞上表达的CD33rSiglecs的快速进化可能反映了病原体相互作用并可能利用这些Siglecs的选择性压力。与亲缘关系密切的类人猿相比,人类Siglec具有一些额外的独特和/或多态性,这些变化可能与唾液酸Neu5Gc的缺失有关,这是唾液病学中另一个明显的人类事件。与类人猿相比,人类CD33rSiglecs的多种变化包括许多人类在非免疫细胞中特异性表达的例子,与涉及此类细胞类型的人类特异性疾病相吻合。一些Siglec基因多态性具有双重后果——在某种情况下有益,但在另一种情况下有害。人类Siglec基因多态性与几种传染性和非传染性疾病的关联可能反映了宿主和微生物病原体之间的持续竞争。
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引用次数: 14
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Molecular Aspects of Medicine
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