Pub Date : 2024-09-13DOI: 10.1140/epjs/s11734-024-01327-8
Santanu Kumar Dash, Santanu Koley
The present study investigates the scattering of ocean wave and currents by an inverted T-type lightweight surface-piercing wave barrier that is situated over a uniform sea bed. To handle the boundary value problem (BVP), an iterative boundary element method (BEM) has been used. To analyze the efficacy of employing thin wave barriers, the impact of porosity, relative submergence depth and width of the barrier on the hydrodynamic properties (like wave force, reflection, dissipation, and transmission) are investigated in the presence of ocean currents. The simulated outcomes demonstrate that the Doppler Shift effect of the frequency due to the presence of ocean currents significantly influences the behaviour of the aforementioned hydrodynamic properties. Moreover, these simulated results also demonstrate that the use of lightweight wave barriers provides a better wave energy dissipation compared to the bulky submerged structures.
本研究探讨了位于均匀海床上的倒 T 型轻质穿面波障对海浪和海流的散射。为处理边界值问题(BVP),采用了迭代边界元法(BEM)。为了分析采用薄波屏障的效果,研究了在洋流存在的情况下,屏障的孔隙率、相对浸没深度和宽度对流体动力特性(如波力、反射、耗散和传输)的影响。模拟结果表明,洋流导致的频率多普勒频移效应极大地影响了上述水动力特性的表现。此外,这些模拟结果还表明,与笨重的水下结构相比,使用轻质挡浪板能更好地消散波浪能量。
{"title":"Iterative boundary element method for modeling an inverted T-type porous barrier in presence of ocean currents","authors":"Santanu Kumar Dash, Santanu Koley","doi":"10.1140/epjs/s11734-024-01327-8","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01327-8","url":null,"abstract":"<p>The present study investigates the scattering of ocean wave and currents by an inverted T-type lightweight surface-piercing wave barrier that is situated over a uniform sea bed. To handle the boundary value problem (BVP), an iterative boundary element method (BEM) has been used. To analyze the efficacy of employing thin wave barriers, the impact of porosity, relative submergence depth and width of the barrier on the hydrodynamic properties (like wave force, reflection, dissipation, and transmission) are investigated in the presence of ocean currents. The simulated outcomes demonstrate that the Doppler Shift effect of the frequency due to the presence of ocean currents significantly influences the behaviour of the aforementioned hydrodynamic properties. Moreover, these simulated results also demonstrate that the use of lightweight wave barriers provides a better wave energy dissipation compared to the bulky submerged structures.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"182 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142219033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Left ventricular assist devices (LVADs) have proven to be the best alternative treatment to address the increasing number of heart failures, while donors are in short supply. However, ventricular assist devices (VADs) have been linked to thrombosis, hemolysis, and other postoperative complications. Despite significant technological advancements, blood damage caused by high shear stress generation has remained a serious concern, which is greatly attributed to the VAD's geometry. The goal of this research is to develop a centrifugal pump design using computational fluid dynamics (CFD) and experimental evaluation. Based on characteristics such as pressure head generation, flow rate, maximum wall shear stress, and hydraulic efficiency, the simulations produce a pump design suitable for mechanical circulatory support. The subsequent experimental testing for pressure head and flow rates validate the CFD outcomes. Further, the pump is installed in an indigenously designed mock circulation loop to examine its capability as an LVAD. The outcomes of CFD and experimental studies reveal that the developed pump is well capable of delivering blood with a flow rate at the required pressure as per desired physiological requirements. Also, the wall shear stress values are within the limit (< 300 N/m2) to avoid any blood damage.
左心室辅助装置(LVAD)已被证明是解决日益增多的心力衰竭患者的最佳替代治疗方法,而供体却供不应求。然而,心室辅助装置(VAD)与血栓形成、溶血和其他术后并发症有关。尽管在技术上取得了重大进步,但高剪切应力造成的血液损伤仍是一个令人严重关切的问题,而这在很大程度上要归咎于 VAD 的几何形状。本研究的目标是利用计算流体动力学(CFD)和实验评估开发一种离心泵设计。根据产生的压头、流量、最大壁面剪应力和水力效率等特性,模拟得出了适合机械循环支持的泵设计。随后的压头和流速实验测试验证了 CFD 的结果。此外,该泵还被安装在一个自主设计的模拟循环回路中,以检验其作为 LVAD 的能力。CFD 和实验研究结果表明,所开发的泵能以所需的压力和流量输送血液,符合预期的生理要求。此外,壁剪应力值也在限制范围内(300 N/m2),可避免任何血液损伤。
{"title":"Development of a centrifugal flow left ventricular assist device through hydrodynamic simulation and in vitro experimentation","authors":"Pulak Kumar Ray, Sumanta Laha, Arup Kumar Das, Prasanta Kumar Das","doi":"10.1140/epjs/s11734-024-01315-y","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01315-y","url":null,"abstract":"<p>Left ventricular assist devices (LVADs) have proven to be the best alternative treatment to address the increasing number of heart failures, while donors are in short supply. However, ventricular assist devices (VADs) have been linked to thrombosis, hemolysis, and other postoperative complications. Despite significant technological advancements, blood damage caused by high shear stress generation has remained a serious concern, which is greatly attributed to the VAD's geometry. The goal of this research is to develop a centrifugal pump design using computational fluid dynamics (CFD) and experimental evaluation. Based on characteristics such as pressure head generation, flow rate, maximum wall shear stress, and hydraulic efficiency, the simulations produce a pump design suitable for mechanical circulatory support. The subsequent experimental testing for pressure head and flow rates validate the CFD outcomes. Further, the pump is installed in an indigenously designed mock circulation loop to examine its capability as an LVAD. The outcomes of CFD and experimental studies reveal that the developed pump is well capable of delivering blood with a flow rate at the required pressure as per desired physiological requirements. Also, the wall shear stress values are within the limit (< 300 N/m<sup>2</sup>) to avoid any blood damage.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"13 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142219032","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-12DOI: 10.1140/epjs/s11734-024-01310-3
Irina Bashkirtseva, Stepan Kachusov, Lev Ryashko
The problem of identifying the conditions that cause the formation of oscillatory patterns in the calcium dynamics of cells is considered. This problem is studied in this article on the basis of a stochastic version of the Li-Rinzel model of calcium dynamics. The study is carried out for mono- and bi-stability zones, where the initial deterministic version of the model has only stable equilibria as attractors. For the monostability parameter zone, conditions have been found under which even small noise destructs the equilibrium mode and forms the spiking oscillatory patterns. In the bistability zone with two coexisting stable equilibria, mechanisms of two-stage transformations from stochastic preference to noise-induced excitement are revealed. To study these stochastic phenomena, we apply the method of confidence ellipses.
{"title":"Noise-induced destruction of equilibrium regimes and spiking patterns formation in calcium dynamics","authors":"Irina Bashkirtseva, Stepan Kachusov, Lev Ryashko","doi":"10.1140/epjs/s11734-024-01310-3","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01310-3","url":null,"abstract":"<p>The problem of identifying the conditions that cause the formation of oscillatory patterns in the calcium dynamics of cells is considered. This problem is studied in this article on the basis of a stochastic version of the Li-Rinzel model of calcium dynamics. The study is carried out for mono- and bi-stability zones, where the initial deterministic version of the model has only stable equilibria as attractors. For the monostability parameter zone, conditions have been found under which even small noise destructs the equilibrium mode and forms the spiking oscillatory patterns. In the bistability zone with two coexisting stable equilibria, mechanisms of two-stage transformations from stochastic preference to noise-induced excitement are revealed. To study these stochastic phenomena, we apply the method of confidence ellipses.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"7 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142227265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1140/epjs/s11734-024-01314-z
Wajid Ullah Jan, Muhammad Farooq, Rehan Ali Shah, Aamir Khan, Rashid Jan, Yasser Alrashedi
The significant influence of convective transport flow between compressing plates involving both homogeneous and heterogeneous reactions, with uniform ionic distribution across the plates’ surfaces, is examined. The physical situation is elucidated through the utilization of fundamental equations governing fluid flow, including the Poisson–Boltzmann equation, the energy equation, and the Nernst–Planck equation, as well as equations pertaining to heterogeneous and homogeneous reactions. The governing equations undergo a transformation into systems of ODEs through a similarity transformation. These equations are then solved numerically utilizing the BVP4c technique for different controlling parameter values, and the outcomes are tabulated and visually represented. In addition, a homotopy analysis method (HAM) is employed to solve the resulting equations. The accuracy and validity of the HAM findings are confirmed by comparing them to solutions obtained from BVP4c numerical solver packages. Based on both homogeneous and heterogeneous chemical reactions, it is concluded that compressing plates increases the distribution of anions and cations. Physical restrictions impact vertical and horizontal velocities, as well as positive and negative charge profiles, are drawn and briefly described. Furthermore, the rate of vertical velocity near the parallel plates increases with an increase in the squeezing Reynolds number.
本研究探讨了压缩板之间的对流传输流的重要影响,其中涉及板表面均匀离子分布的均相反应和异相反应。通过利用流体流动的基本方程,包括泊松-波尔兹曼方程、能量方程、奈恩斯特-普朗克方程,以及与异质反应和均质反应有关的方程,阐明了物理现象。通过相似性变换,这些控制方程被转化为 ODE 系统。然后,利用 BVP4c 技术对不同控制参数值对这些方程进行数值求解,并将结果列表和直观地表示出来。此外,还采用了同调分析方法(HAM)来求解所得到的方程。通过与 BVP4c 数值求解软件包获得的解进行比较,确认了 HAM 结果的准确性和有效性。根据均相和异相化学反应得出的结论是,压缩板会增加阴阳离子的分布。绘制并简要描述了影响垂直和水平速度以及正负电荷剖面的物理限制。此外,平行板附近的垂直速度随着挤压雷诺数的增加而增加。
{"title":"An investigation of the Nernst–Planck model of an electro-viscous fluid flow between squeezing plates with homogeneous–heterogeneous reactions","authors":"Wajid Ullah Jan, Muhammad Farooq, Rehan Ali Shah, Aamir Khan, Rashid Jan, Yasser Alrashedi","doi":"10.1140/epjs/s11734-024-01314-z","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01314-z","url":null,"abstract":"<p>The significant influence of convective transport flow between compressing plates involving both homogeneous and heterogeneous reactions, with uniform ionic distribution across the plates’ surfaces, is examined. The physical situation is elucidated through the utilization of fundamental equations governing fluid flow, including the Poisson–Boltzmann equation, the energy equation, and the Nernst–Planck equation, as well as equations pertaining to heterogeneous and homogeneous reactions. The governing equations undergo a transformation into systems of ODEs through a similarity transformation. These equations are then solved numerically utilizing the BVP4c technique for different controlling parameter values, and the outcomes are tabulated and visually represented. In addition, a homotopy analysis method (HAM) is employed to solve the resulting equations. The accuracy and validity of the HAM findings are confirmed by comparing them to solutions obtained from BVP4c numerical solver packages. Based on both homogeneous and heterogeneous chemical reactions, it is concluded that compressing plates increases the distribution of anions and cations. Physical restrictions impact vertical and horizontal velocities, as well as positive and negative charge profiles, are drawn and briefly described. Furthermore, the rate of vertical velocity near the parallel plates increases with an increase in the squeezing Reynolds number.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"8 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142219034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Deep learning algorithms will play a key role in the upcoming runs of the Large Hadron Collider (LHC), helping bolster various fronts ranging from fast and accurate detector simulations to physics analysis probing possible deviations from the Standard Model. The game-changing feature of these new algorithms is the ability to extract relevant information from high-dimensional input spaces, often regarded as “replacing the expert” in designing physics-intuitive variables. While this may seem true at first glance, it is far from reality. Existing research shows that physics-inspired feature extractors have many advantages beyond improving the qualitative understanding of the extracted features. In this review, we systematically explore automatic feature extraction from a phenomenological viewpoint and the motivation for physics-inspired architectures. We also discuss how prior knowledge from physics results in the naturalness of the point cloud representation and discuss graph-based applications to LHC phenomenology.
{"title":"Foundations of automatic feature extraction at LHC–point clouds and graphs","authors":"Akanksha Bhardwaj, Partha Konar, Vishal Ngairangbam","doi":"10.1140/epjs/s11734-024-01306-z","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01306-z","url":null,"abstract":"<p>Deep learning algorithms will play a key role in the upcoming runs of the Large Hadron Collider (LHC), helping bolster various fronts ranging from fast and accurate detector simulations to physics analysis probing possible deviations from the Standard Model. The game-changing feature of these new algorithms is the ability to extract relevant information from high-dimensional input spaces, often regarded as “replacing the expert” in designing physics-intuitive variables. While this may seem true at first glance, it is far from reality. Existing research shows that physics-inspired feature extractors have many advantages beyond improving the qualitative understanding of the extracted features. In this review, we systematically explore automatic feature extraction from a phenomenological viewpoint and the motivation for physics-inspired architectures. We also discuss how prior knowledge from physics results in the naturalness of the point cloud representation and discuss graph-based applications to LHC phenomenology.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"66 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142219036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1140/epjs/s11734-024-01309-w
Eugenya V. Makoveeva, Dmitri V. Alexandrov
Here we consider the influence of simultaneous operation of convective and conductive heat and mass fluxes in a binary liquid on directional crystallization processes with a two-phase region. We consider two possible crystallization scenarios with constant and unsteady growth velocities and construct the corresponding analytical solutions in a parametric form. These solutions enable us to find such process characteristics as temperature, impurity concentration, solid-phase fraction, the laws of motion for the two-phase region boundaries dependent on material parameters and crystallization driving force, i.e. the specified system cooling conditions. The solutions obtained enable us to describe the material microstructure by means of two-phase region permeability and primary interdendritic spacing dependent on the solid-phase fraction of a solidified material. The theory under consideration also enables us to find the unfrozen liquid phase fraction of a two-phase material released in ice and permafrost melting processes, which defines the biophysical significance of the issue under study.
{"title":"Directional crystallization of a two-phase region with a mixed conductive–convective heat and mass transport","authors":"Eugenya V. Makoveeva, Dmitri V. Alexandrov","doi":"10.1140/epjs/s11734-024-01309-w","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01309-w","url":null,"abstract":"<p>Here we consider the influence of simultaneous operation of convective and conductive heat and mass fluxes in a binary liquid on directional crystallization processes with a two-phase region. We consider two possible crystallization scenarios with constant and unsteady growth velocities and construct the corresponding analytical solutions in a parametric form. These solutions enable us to find such process characteristics as temperature, impurity concentration, solid-phase fraction, the laws of motion for the two-phase region boundaries dependent on material parameters and crystallization driving force, i.e. the specified system cooling conditions. The solutions obtained enable us to describe the material microstructure by means of two-phase region permeability and primary interdendritic spacing dependent on the solid-phase fraction of a solidified material. The theory under consideration also enables us to find the unfrozen liquid phase fraction of a two-phase material released in ice and permafrost melting processes, which defines the biophysical significance of the issue under study.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"44 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142219035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-10DOI: 10.1140/epjs/s11734-024-01318-9
Erik Leonardo Mateos-Salgado, José Esael Pineda-Sánchez, Fructuoso Ayala-Guerrero, Carlos Alberto Gutiérrez-Chávez
Heart rate variability (HRV) refers to the physiological phenomenon of variation in heartbeat duration, which can be characterized using various metrics. Considering a complex systems approach, in this study we used network modeling to quantitatively evaluate the relationship between different HRV metrics during sleep. Polysomnography recordings were performed on 24 healthy participants and their cardiac activity was sampled from the N2, N3, and REM sleep stages. Fifty-eight HRV metrics were calculated, and the relationship between each was assessed using mutual information (MI). One network was created for each sleep stage; HRV metrics constituted its nodes, and MI values were used to establish its edges. Repeated measures ANOVA was applied to each metric to assess variation between sleep stages. It was found that all three networks had characteristics of complex networks. Several communities of shared similar metrics were found across the three sleep stages. Of these, one community had the same metrics in stages N2 and N3, but in REM sleep was divided into three communities. REM sleep exhibited significant differences compared to the other sleep stages in several metrics. These preliminary findings allow us to suggest the application of this method in other HRV research contexts, which will determine its scope and limitations.
{"title":"Network analysis of the relationship between different heart rate variability metrics during sleep","authors":"Erik Leonardo Mateos-Salgado, José Esael Pineda-Sánchez, Fructuoso Ayala-Guerrero, Carlos Alberto Gutiérrez-Chávez","doi":"10.1140/epjs/s11734-024-01318-9","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01318-9","url":null,"abstract":"<p>Heart rate variability (HRV) refers to the physiological phenomenon of variation in heartbeat duration, which can be characterized using various metrics. Considering a complex systems approach, in this study we used network modeling to quantitatively evaluate the relationship between different HRV metrics during sleep. Polysomnography recordings were performed on 24 healthy participants and their cardiac activity was sampled from the N2, N3, and REM sleep stages. Fifty-eight HRV metrics were calculated, and the relationship between each was assessed using mutual information (MI). One network was created for each sleep stage; HRV metrics constituted its nodes, and MI values were used to establish its edges. Repeated measures ANOVA was applied to each metric to assess variation between sleep stages. It was found that all three networks had characteristics of complex networks. Several communities of shared similar metrics were found across the three sleep stages. Of these, one community had the same metrics in stages N2 and N3, but in REM sleep was divided into three communities. REM sleep exhibited significant differences compared to the other sleep stages in several metrics. These preliminary findings allow us to suggest the application of this method in other HRV research contexts, which will determine its scope and limitations.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"303 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142219037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-09DOI: 10.1140/epjs/s11734-024-01317-w
B. Nandhini, B. Sruthakeerthi
The aim of this research is to enhance image quality by applying convolution methods to a newly generalized subclass of an analytic function, (k-Omega S^*(rho ,beta )), which incorporates the concept of the Mittag-Leffer type Poisson distribution associated with starlike functions. Image enhancement processes, such as noise reduction, sharpening, and brightening, improve the image’s suitability for display or further analysis. The proposed method demonstrates superior results based on performance metrics including PSNR (Peak Signal-to-Noise Ratio), SSIM (Structural Similarity Index), MSQE (Mean Squared Error), RMSE (Root Mean Squared Error), PCC (Pearson Correlation Coefficient), and CIR (Contrast Improvement Ratio). For the flower dataset, the technique achieves values of 20.425 for PSNR, 0.8866 for SSIM, 765.044 for MSQE, 27.143 for RMSE, 0.1310 for PCC, and 0.9794 for CIR. Similarly, for the brain dataset, the quality metrics are 24.2981 for PSNR, 0.9773 for SSIM, 268.288 for MSQE, 16.0041 for RMSE, 0.9888 for PCC, and 0.2918 for CIR.
{"title":"Investigating the quality measures of image enhancement by convoluting the coefficients of analytic functions","authors":"B. Nandhini, B. Sruthakeerthi","doi":"10.1140/epjs/s11734-024-01317-w","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01317-w","url":null,"abstract":"<p>The aim of this research is to enhance image quality by applying convolution methods to a newly generalized subclass of an analytic function, <span>(k-Omega S^*(rho ,beta ))</span>, which incorporates the concept of the Mittag-Leffer type Poisson distribution associated with starlike functions. Image enhancement processes, such as noise reduction, sharpening, and brightening, improve the image’s suitability for display or further analysis. The proposed method demonstrates superior results based on performance metrics including PSNR (Peak Signal-to-Noise Ratio), SSIM (Structural Similarity Index), MSQE (Mean Squared Error), RMSE (Root Mean Squared Error), PCC (Pearson Correlation Coefficient), and CIR (Contrast Improvement Ratio). For the flower dataset, the technique achieves values of 20.425 for PSNR, 0.8866 for SSIM, 765.044 for MSQE, 27.143 for RMSE, 0.1310 for PCC, and 0.9794 for CIR. Similarly, for the brain dataset, the quality metrics are 24.2981 for PSNR, 0.9773 for SSIM, 268.288 for MSQE, 16.0041 for RMSE, 0.9888 for PCC, and 0.2918 for CIR.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"67 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142219038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-06DOI: 10.1140/epjs/s11734-024-01301-4
Waqar Hussain Shah, Abdullah Baloch, Rider Jaimes-Reátegui, Sohail Iqbal, Syeda Rafia Fatima, Alexander N. Pisarchik
Acute Lymphoblastic Leukemia (ALL) is a prevalent form of childhood blood cancer characterized by the proliferation of immature white blood cells that rapidly replace normal cells in the bone marrow. The exponential growth of these leukemic cells can be fatal if not treated promptly. Classifying lymphoblasts and healthy cells poses a significant challenge, even for domain experts, due to their morphological similarities. Automated computer analysis of ALL can provide substantial support in this domain and potentially save numerous lives. In this paper, we propose a novel classification approach that involves analyzing shapes and extracting topological features of ALL cells. We employ persistent homology to capture these topological features. Our technique accurately and efficiently detects and classifies leukemia blast cells, achieving a recall of 98.2% and an F1-score of 94.6%. This approach has the potential to significantly enhance leukemia diagnosis and therapy.
急性淋巴细胞白血病(ALL)是一种常见的儿童血癌,其特点是未成熟白细胞增殖,迅速取代骨髓中的正常细胞。如果不及时治疗,这些白血病细胞的指数式增长可能会致命。由于淋巴母细胞和健康细胞形态相似,即使是领域专家也很难对它们进行分类。对 ALL 进行自动计算机分析可为这一领域提供大量支持,并有可能挽救无数生命。在本文中,我们提出了一种新颖的分类方法,包括分析 ALL 细胞的形状并提取拓扑特征。我们采用持久同源性来捕捉这些拓扑特征。我们的技术能准确、高效地检测白血病爆炸细胞并对其进行分类,召回率达到 98.2%,F1 分数达到 94.6%。这种方法有望大大提高白血病的诊断和治疗水平。
{"title":"Acute lymphoblastic leukemia classification using persistent homology","authors":"Waqar Hussain Shah, Abdullah Baloch, Rider Jaimes-Reátegui, Sohail Iqbal, Syeda Rafia Fatima, Alexander N. Pisarchik","doi":"10.1140/epjs/s11734-024-01301-4","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01301-4","url":null,"abstract":"<p>Acute Lymphoblastic Leukemia (ALL) is a prevalent form of childhood blood cancer characterized by the proliferation of immature white blood cells that rapidly replace normal cells in the bone marrow. The exponential growth of these leukemic cells can be fatal if not treated promptly. Classifying lymphoblasts and healthy cells poses a significant challenge, even for domain experts, due to their morphological similarities. Automated computer analysis of ALL can provide substantial support in this domain and potentially save numerous lives. In this paper, we propose a novel classification approach that involves analyzing shapes and extracting topological features of ALL cells. We employ persistent homology to capture these topological features. Our technique accurately and efficiently detects and classifies leukemia blast cells, achieving a recall of 98.2% and an <i>F1</i>-score of 94.6%. This approach has the potential to significantly enhance leukemia diagnosis and therapy.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"13 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142219039","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-05DOI: 10.1140/epjs/s11734-024-01313-0
Maxim V. Dudorov
The study of biological systems by methods of physical kinetics and non-equilibrium thermodynamics often faces the difficulty of studying nonlinear processes due to the significant deviation from equilibrium. In this paper, the new variation approach is proposed that allows us to generalize the patterns of chemical processes taking into account the influence of non-equilibrium effects.The study of interrelated chemical reactions is considered as one of the applications of this theory. The new method has been developed for the general description of the kinetics of several reactions, taking into account their mutual influence on each other. Practical examples and model calculations for several reactions with varying the degrees of influence on each other are considered. The calculations performed for the several reactions allowed us to evaluate their mutual influence on the change in the reaction rate, as well as on the change in the reaction reagents concentration over time. The results obtained can be used to describe complex chemical reactions in various systems.
{"title":"Variation theory of interconnected chemical reactions","authors":"Maxim V. Dudorov","doi":"10.1140/epjs/s11734-024-01313-0","DOIUrl":"https://doi.org/10.1140/epjs/s11734-024-01313-0","url":null,"abstract":"<p>The study of biological systems by methods of physical kinetics and non-equilibrium thermodynamics often faces the difficulty of studying nonlinear processes due to the significant deviation from equilibrium. In this paper, the new variation approach is proposed that allows us to generalize the patterns of chemical processes taking into account the influence of non-equilibrium effects.The study of interrelated chemical reactions is considered as one of the applications of this theory. The new method has been developed for the general description of the kinetics of several reactions, taking into account their mutual influence on each other. Practical examples and model calculations for several reactions with varying the degrees of influence on each other are considered. The calculations performed for the several reactions allowed us to evaluate their mutual influence on the change in the reaction rate, as well as on the change in the reaction reagents concentration over time. The results obtained can be used to describe complex chemical reactions in various systems.</p>","PeriodicalId":501403,"journal":{"name":"The European Physical Journal Special Topics","volume":"4 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142219041","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}