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Development of a heat-stable alkaline phosphatase reporter system for cis-regulatory analysis and its application to 3D digital imaging of Xenopus embryonic tissues 开发用于顺式调控分析的热稳定碱性磷酸酶报告系统,并将其应用于章鱼胚胎组织的三维数字成像。
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-03-04 DOI: 10.1111/dgd.12919
Kiyo Sakagami, Takeshi Igawa, Kaori Saikawa, Yusuke Sakaguchi, Nusrat Hossain, Chiho Kato, Kazuhito Kinemori, Nanoka Suzuki, Makoto Suzuki, Akane Kawaguchi, Haruki Ochi, Yuki Tajika, Hajime Ogino

Xenopus is one of the essential model systems for studying vertebrate development. However, one drawback of this system is that, because of the opacity of Xenopus embryos, 3D imaging analysis is limited to surface structures, explant cultures, and post-embryonic tadpoles. To develop a technique for 3D tissue/organ imaging in whole Xenopus embryos, we identified optimal conditions for using placental alkaline phosphatase (PLAP) as a transgenic reporter and applied it to the correlative light microscopy and block-face imaging (CoMBI) method for visualization of PLAP-expressing tissues/organs. In embryos whose endogenous alkaline phosphatase activities were heat-inactivated, PLAP staining visualized various tissue-specific enhancer/promoter activities in a manner consistent with green fluorescent protein (GFP) fluorescence. Furthermore, PLAP staining appeared to be more sensitive than GFP fluorescence as a reporter, and the resulting expression patterns were not mosaic, in striking contrast to the mosaic staining pattern of β-galactosidase expressed from the lacZ gene that was introduced by the same transgenesis method. Owing to efficient penetration of alkaline phosphatase substrates, PLAP activity was detected in deep tissues, such as the developing brain, spinal cord, heart, and somites, by whole-mount staining. The stained embryos were analyzed by the CoMBI method, resulting in the digital reconstruction of 3D images of the PLAP-expressing tissues. These results demonstrate the efficacy of the PLAP reporter system for detecting enhancer/promoter activities driving deep tissue expression and its combination with the CoMBI method as a powerful approach for 3D digital imaging analysis of specific tissue/organ structures in Xenopus embryos.

章鱼是研究脊椎动物发育的重要模型系统之一。然而,该系统的一个缺点是,由于章鱼胚胎不透明,三维成像分析仅限于表面结构、外植体培养物和胚胎后期的蝌蚪。为了开发一种在整个爪蟾胚胎中进行三维组织/器官成像的技术,我们确定了使用胎盘碱性磷酸酶(PLAP)作为转基因报告物的最佳条件,并将其应用于相关光学显微镜和块面成像(CoMBI)方法,以实现表达 PLAP 的组织/器官的可视化。在内源性碱性磷酸酶活性受热失活的胚胎中,PLAP染色能以与绿色荧光蛋白(GFP)荧光一致的方式观察到各种组织特异性增强子/启动子活动。此外,作为一种报告基因,PLAP染色似乎比GFP荧光更灵敏,而且所产生的表达模式也不是马赛克式的,这与通过相同的转基因方法引入lacZ基因表达的β-半乳糖苷酶的马赛克染色模式形成了鲜明对比。由于碱性磷酸酶底物的高效渗透,PLAP活性可通过整装染色在深部组织中检测到,如发育中的大脑、脊髓、心脏和体节。染色后的胚胎通过 CoMBI 方法进行分析,从而获得 PLAP 表达组织的三维数字图像。这些结果证明了 PLAP 报告系统在检测驱动深层组织表达的增强子/启动子活动方面的功效,并证明了它与 CoMBI 方法的结合是对爪蟾胚胎中特定组织/器官结构进行三维数字成像分析的有力方法。
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引用次数: 0
Cell adhesion and actin dynamics factors promote axonal extension and synapse formation in transplanted Drosophila photoreceptor cells 细胞粘附和肌动蛋白动力学因子促进果蝇感光细胞轴突延伸和突触形成
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-02-25 DOI: 10.1111/dgd.12916
Riku Iwanaga, Nagisa Yahagi, Satoko Hakeda-Suzuki, Takashi Suzuki

Vision is formed by the transmission of light stimuli to the brain through axons extending from photoreceptor cells. Damage to these axons leads to loss of vision. Despite research on neural circuit regeneration through transplantation, achieving precise axon projection remains challenging. To achieve optic nerve regeneration by transplantation, we employed the Drosophila visual system. We previously established a transplantation method for Drosophila utilizing photoreceptor precursor cells extracted from the eye disc. However, little axonal elongation of transplanted cells into the brain, the lamina, was observed. We verified axonal elongation to the lamina by modifying the selection process for transplanted cells. Moreover, we focused on N-cadherin (Ncad), a cell adhesion factor, and Twinstar (Tsr), which has been shown to promote actin reorganization and induce axon elongation in damaged nerves. Overexpression of Ncad and tsr promoted axon elongation to the lamina, along with presynaptic structure formation in the elongating axons. Furthermore, overexpression of Neurexin-1 (Nrx-1), encoding a protein identified as a synaptic organizer, was found to not only promote presynapse formation but also enhance axon elongation. By introducing Ncad, tsr, and Nrx-1, we not only successfully achieved axonal projection of transplanted cells to the brain beyond the retina, but also confirmed the projection of transplanted cells into a deeper ganglion, the medulla. The present study offers valuable insights to realize regeneration through transplantation in a more complex nervous system.

视觉是由光刺激通过从感光细胞延伸出来的轴突传递到大脑而形成的。这些轴突受损会导致视力丧失。尽管对通过移植实现神经回路再生进行了研究,但实现轴突的精确投射仍具有挑战性。为了通过移植实现视神经再生,我们采用了果蝇视觉系统。此前,我们利用从眼盘提取的感光前体细胞建立了果蝇的移植方法。然而,我们几乎没有观察到移植细胞的轴突伸长到大脑(薄层)。我们通过修改移植细胞的筛选过程,验证了轴突伸长到脑膜的情况。此外,我们还重点研究了细胞粘附因子N-cadherin(Ncad)和Twinstar(Tsr),后者已被证明能促进肌动蛋白重组并诱导受损神经的轴突延伸。过量表达 Ncad 和 tsr 能促进轴突向薄层延伸,并在延伸的轴突中形成突触前结构。此外,研究还发现,过量表达编码突触组织者蛋白的 Neurexin-1 (Nrx-1) 不仅能促进突触前结构的形成,还能增强轴突的伸长。通过引入Ncad、tsr和Nrx-1,我们不仅成功地实现了移植细胞向视网膜以外的大脑的轴突投射,而且证实了移植细胞向更深的神经节--延髓的投射。本研究为在更复杂的神经系统中通过移植实现再生提供了宝贵的见解。
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引用次数: 0
Evolutionarily conserved roles of foxg1a in the developing subpallium of zebrafish embryos foxg1a 在斑马鱼胚胎皮下发育过程中的进化保守作用
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-02-20 DOI: 10.1111/dgd.12917
Koto Umeda, Kaiho Tanaka, Gazlima Chowdhury, Kouhei Nasu, Yuri Kuroyanagi, Kyo Yamasu

The vertebrate telencephalic lobes consist of the pallium (dorsal) and subpallium (ventral). The subpallium gives rise to the basal ganglia, encompassing the pallidum and striatum. The development of this region is believed to depend on Foxg1/Foxg1a functions in both mice and zebrafish. This study aims to elucidate the genetic regulatory network controlled by foxg1a in subpallium development using zebrafish as a model. The expression gradient of foxg1a within the developing telencephalon was examined semi-quantitatively in initial investigations. Utilizing the CRISPR/Cas9 technique, we subsequently established a foxg1a mutant line and observed the resultant phenotypes. Morphological assessment revealed that foxg1a mutants exhibit a thin telencephalon together with a misshapen preoptic area (POA). Notably, accumulation of apoptotic cells was identified in this region. In mutants at 24 h postfertilization, the expression of pallium markers expanded ventrally, while that of subpallium markers was markedly suppressed. Concurrently, the expression of fgf8a, vax2, and six3b was shifted ventrally, causing anomalous expression in regions typical of POA formation in wild-type embryos. Consequently, the foxg1a mutation led to expansion of the pallium and disrupted the subpallium and POA. This highlights a pivotal role of foxg1a in directing the dorsoventral patterning of the telencephalon, particularly in subpallium differentiation, mirroring observations in mice. Additionally, reduced expression of neural progenitor maintenance genes was detected in mutants, suggesting the necessity of foxg1a in preserving neural progenitors. Collectively, these findings underscore evolutionarily conserved functions of foxg1 in the development of the subpallium in vertebrate embryos.

脊椎动物的端脑叶由苍白球(背侧)和苍白球下(腹侧)组成。皮质下产生基底节,包括苍白球和纹状体。在小鼠和斑马鱼中,这一区域的发育被认为取决于 Foxg1/Foxg1a 的功能。本研究旨在以斑马鱼为模型,阐明Foxg1a在丘脑下发育过程中控制的遗传调控网络。初步研究对发育中端脑内 foxg1a 的表达梯度进行了半定量检测。随后,我们利用CRISPR/Cas9技术建立了一个foxg1a突变系,并观察了由此产生的表型。形态学评估显示,foxg1a突变体的端脑较薄,视前区(POA)畸形。值得注意的是,在这一区域发现了凋亡细胞的积累。在受精后 24 小时的突变体中,胼胝体标记的表达向腹侧扩展,而胼胝体下标记的表达则明显受到抑制。同时,fgf8a、vax2 和 six3b 的表达也向腹侧移动,导致野生型胚胎中 POA 形成的典型区域出现异常表达。因此,foxg1a 突变导致胼胝体扩张,破坏了胼胝体下和 POA。这凸显了 foxg1a 在引导端脑背腹模式化,尤其是在皮层下分化中的关键作用,这与在小鼠中的观察结果如出一辙。此外,在突变体中还检测到神经祖细胞维持基因的表达减少,这表明 foxg1a 在保存神经祖细胞方面的必要性。总之,这些研究结果强调了foxg1在脊椎动物胚胎皮层下发育过程中的进化保守功能。
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引用次数: 0
FGF-stimulated tendon cells embrace a chondrogenic fate with BMP7 in newt tissue culture 在蝾螈组织培养中,FGF刺激的肌腱细胞在BMP7的作用下接受软骨形成的命运。
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-02-11 DOI: 10.1111/dgd.12913
Nao Sugiura, Kiyokazu Agata

Newts can regenerate functional elbow joints after amputation at the joint level. Previous studies have suggested the potential contribution of cells from residual tendon tissues to joint cartilage regeneration. A serum-free tissue culture system for tendons was established to explore cell dynamics during joint regeneration. Culturing isolated tendons in this system, stimulated by regeneration-related factors, such as fibroblast growth factor (FGF) and platelet-derived growth factor, led to robust cell migration and proliferation. Moreover, cells proliferating in an FGF-rich environment differentiated into Sox9-positive chondrocytes upon BMP7 introduction. These findings suggest that FGF-stimulated cells from tendons may aid in joint cartilage regeneration during functional elbow joint regeneration in newts.

蝾螈可以在关节水平截肢后再生出功能性肘关节。之前的研究表明,残留肌腱组织的细胞可能有助于关节软骨再生。为了探索关节再生过程中的细胞动态,我们建立了一个无血清肌腱组织培养系统。在成纤维细胞生长因子(FGF)和血小板衍生生长因子等再生相关因子的刺激下,在该系统中培养离体肌腱可导致细胞的强力迁移和增殖。此外,在富含 FGF 的环境中增殖的细胞在引入 BMP7 后会分化成 Sox9 阳性的软骨细胞。这些研究结果表明,在蝾螈的肘关节功能再生过程中,来自肌腱的FGF刺激细胞可能有助于关节软骨再生。
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引用次数: 0
Dissection of N-deacetylase and N-sulfotransferase activities of NDST1 and their effects on Wnt8 distribution and signaling in Xenopus embryos 剖析 NDST1 的 N-去乙酰化酶和 N-磺基转移酶活性及其对爪蟾胚胎中 Wnt8 分布和信号传导的影响。
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-02-07 DOI: 10.1111/dgd.12915
Minako Suzuki, Shinji Takada, Yusuke Mii

Wnt is a family of secreted signaling proteins involved in the regulation of cellular processes, including maintenance of stem cells, carcinogenesis, and cell differentiation. In the context of early vertebrate embryogenesis, graded distribution of Wnt proteins has been thought to regulate positional information along the antero-posterior axis. However, understanding of the molecular basis for Wnt spatial distribution remains poor. Modified states of heparan sulfate (HS) proteoglycans are essential for Wnt8 localization, because depletion of N-deacetylase/N-sulfotransferase 1 (NDST1), a modification enzyme of HS chains, decreases Wnt8 levels and NDST1 overexpression increases Wnt8 levels on the cell surface. Since overexpression of NDST1 increases both deacetylation and N-sulfation of HS chains, it is not clear which function of NDST1 is actually involved in Wnt8 localization. In the present study, we generated an NDST1 mutant that specifically increases deacetylation, but not N-sulfation, of HS chains in Xenopus embryos. Unlike wild-type NDST1, this mutant did not increase Wnt8 accumulation on the cell surface, but it reduced canonical Wnt signaling, as determined with the TOP-Flash reporter assay. These results suggest that N-sulfation of HS chains is responsible for localization of Wnt8 and Wnt8 signaling, whereas deacetylation has an inhibitory effect on canonical Wnt signaling. Consistently, overexpression of wild-type NDST1, but not the mutant, resulted in small eyes in Xenopus embryos. Thus, our NDST1 mutant enables us to dissect the regulation of Wnt8 localization and signaling by HS proteoglycans by specifically manipulating the enzymatic activities of NDST1.

Wnt 是一个分泌型信号蛋白家族,参与细胞过程的调控,包括干细胞的维持、癌变和细胞分化。在早期脊椎动物胚胎发生过程中,Wnt 蛋白的分级分布被认为是沿前后轴调节位置信息。然而,人们对 Wnt 空间分布的分子基础仍然缺乏了解。硫酸肝素(HS)蛋白聚糖的修饰状态对Wnt8的定位至关重要,因为硫酸肝素链的修饰酶N-脱乙酰酶/N-磺基转移酶1(NDST1)的缺失会降低Wnt8的水平,而NDST1的过表达会增加细胞表面的Wnt8水平。由于 NDST1 的过表达会同时增加 HS 链的脱乙酰化和 N-硫酸化,因此尚不清楚 NDST1 的哪种功能实际参与了 Wnt8 的定位。在本研究中,我们产生了一种 NDST1 突变体,它能特异性地增加异种胚胎中 HS 链的去乙酰化,但不增加 N-硫酸化。与野生型 NDST1 不同的是,这种突变体不会增加 Wnt8 在细胞表面的积累,但却会减少典型的 Wnt 信号转导,这是由 TOP-Flash 报告实验确定的。这些结果表明,HS 链的 N-硫酸化是 Wnt8 定位和 Wnt8 信号转导的原因,而去乙酰化则对典型的 Wnt 信号转导有抑制作用。同样,过表达野生型 NDST1 而非突变体会导致爪蟾胚胎出现小眼睛。因此,我们的 NDST1 突变体使我们能够通过特异性地操纵 NDST1 的酶活性来剖析 HS 蛋白多糖对 Wnt8 定位和信号传导的调控。
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引用次数: 0
Membrane molecule bouncer regulates sperm binding activity in immature oocytes in the viviparous teleost species Poecilia reticulata (guppy) 膜分子 "保镖 "调控胎生远洋鱼类石斑鱼(Poecilia reticulata)未成熟卵母细胞中的精子结合活性
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-02-01 DOI: 10.1111/dgd.12914
Junki Yoshida, Yuki Tajika, Kazuko Uchida, Makoto Kuwahara, Kaori Sano, Takayuki Suzuki, Eiichi Hondo, Atsuo Iida

Generally, in vertebrates, the first step toward fertilization is the ovulation of mature oocytes, followed by their binding to sperm cells outside of the ovary. Exceptionally, the oocytes of poeciliid fish are fertilized by sperm cells within the follicle, and the developmental embryo is subsequently released into the ovarian lumen before delivery. In the present study, we aimed to identify the factor(s) responsible for intrafollicular fertilization in a viviparous teleost species, Poecilia reticulata (guppy). Sperm tracking analysis in this regard indicated that in this species, sperm cells reached immature oocytes including the germinal vesicle, and the insemination assay indicated that the immature oocytes robustly adhered to the sperm cells; similar binding was not observed in Danio rerio (zebrafish) and Oryzias latipes (medaka). We also identified the Ly6/uPAR protein bouncer as the factor responsible for the observed sperm binding activity of the immature oocytes in this species. The recombinant bouncer peptide acted as an inhibitory decoy for the sperm–oocyte binding in guppy. On the other hand, ectopic expression of guppy bouncer in zebrafish oocytes resulted in interspecific sperm–oocyte binding. These results argue that bouncer is responsible for sperm–immature oocyte binding. Our findings highlight the unique reproductive strategies of guppy fish and enhance our understanding of the diverse reproductive mechanisms in vertebrates.

一般来说,脊椎动物受精的第一步是成熟卵母细胞排卵,然后与卵巢外的精细胞结合。在特殊情况下,poeciliid鱼类的卵母细胞会在卵泡内与精细胞受精,随后发育的胚胎会在分娩前被释放到卵巢腔内。在本研究中,我们的目的是确定在胎生远洋鱼类栉水母(Poecilia reticulata)中卵泡内受精的因素。精子跟踪分析表明,在该物种中,精子细胞可到达未成熟卵母细胞(包括生殖囊),授精试验表明,未成熟卵母细胞与精子细胞紧密结合;而在斑马鱼和青鳉中未观察到类似的结合。我们还发现,Ly6/uPAR 蛋白 bouncer 是导致该物种未成熟卵母细胞具有精子结合活性的因素。重组的 "弹跳者 "多肽对虹鳟的精子-卵母细胞结合具有抑制作用。另一方面,在斑马鱼卵母细胞中异位表达guppy bouncer会导致种间精子-卵细胞结合。这些结果证明,"保镖 "是精子与未成熟卵母细胞结合的元凶。我们的研究结果突显了石首鱼独特的生殖策略,并加深了我们对脊椎动物多样化生殖机制的理解。
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引用次数: 0
Macrophages enhance regeneration of lateral line neuromast derived from interneuromast cells through TGF-β in zebrafish 巨噬细胞通过TGF-β促进斑马鱼由神经间质细胞衍生的侧线神经母细胞再生
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-28 DOI: 10.1111/dgd.12911
Wei-Lin Hsu, Yu-Chi Lin, Meng-Ju Lin, Yi-Wen Wang, Shyh-Jye Lee

Macrophages play a pivotal role in the response to injury, contributing significantly to the repair and regrowth of damaged tissues. The external lateral line system in aquatic organisms offers a practical model for studying regeneration, featuring interneuromast cells connecting sensory neuromasts. Under normal conditions, these cells remain dormant, but their transformation into neuromasts occurs when overcoming inhibitory signals from Schwann cells and posterior lateral line nerves. The mechanism enabling interneuromast cells to evade inhibition by Schwann cells remains unclear. Previous observations suggest that macrophages physically interact with neuromasts, nerves, and Schwann cells during regeneration. This interaction leads to the regeneration of neuromasts in a subset of zebrafish with ablated neuromasts. To explore whether macrophages achieve this effect through secreted cytokines, we conducted experiments involving tail amputation in zebrafish larvae and tested the impact of cytokine inhibitors on neuromast regeneration. Most injured larvae remarkably regenerated a neuromast within 4 days post-amputation. Intriguingly, removal of macrophages and inhibition of the anti-inflammatory cytokine transforming growth factor-beta (TGF-β) significantly delayed neuromast regeneration. Conversely, inhibition of the pro-inflammatory cytokines interleukin-6 (IL-6) and tumor necrosis factor-alpha (TNF-α) had minor effects on the regeneration process. This study provides insights into how macrophages activate interneuromast cells, elucidating the pathways underlying neuromast regeneration.

巨噬细胞在损伤反应中起着关键作用,对受损组织的修复和再生有重大贡献。水生生物的外侧线系统为研究再生提供了一个实用模型,其特点是神经间质细胞连接感觉神经细胞。在正常情况下,这些细胞处于休眠状态,但当它们克服来自许旺细胞和后侧线神经的抑制信号时,就会转变为神经母细胞。神经间质细胞逃避许旺细胞抑制的机制仍不清楚。以前的观察表明,巨噬细胞在再生过程中与神经母细胞、神经和许旺细胞发生物理相互作用。这种相互作用导致部分神经母细胞被切除的斑马鱼的神经母细胞再生。为了探究巨噬细胞是否通过分泌细胞因子达到这一效果,我们对斑马鱼幼体进行了断尾实验,并测试了细胞因子抑制剂对神经母细胞再生的影响。大多数受伤的幼体在断尾后 4 天内显著再生出神经母细胞。耐人寻味的是,清除巨噬细胞和抑制抗炎细胞因子转化生长因子-β(TGF-β)会显著延迟神经母细胞的再生。相反,抑制促炎细胞因子白细胞介素-6(IL-6)和肿瘤坏死因子-α(TNF-α)对再生过程的影响较小。这项研究深入揭示了巨噬细胞如何激活神经间质细胞,阐明了神经间质再生的基本途径。
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引用次数: 0
Involvement of nr2f genes in brain regionalization and eye development during early zebrafish development 在斑马鱼早期发育过程中,nr2f 基因参与了大脑区域化和眼球发育。
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-23 DOI: 10.1111/dgd.12912
Gazlima Chowdhury, Koto Umeda, Takero Ohyanagi, Kouhei Nasu, Kyo Yamasu

Nuclear receptor subfamily 2 group F (Nr2f) proteins are essential for brain development in mice, but little is known about their precise roles and their evolutionary diversification. In the present study, the expression patterns of major nr2f genes (nr2f1a, nr2f1b, and nr2f2) during early brain development were investigated in zebrafish. Comparisons of their expression patterns revealed similar but temporally and spatially distinct patterns after early somite stages in the brain. Frameshift mutations in the three nr2f genes, achieved using the CRISPR/Cas9 method, resulted in a smaller telencephalon and smaller eyes in the nr2f1a mutants; milder forms of those defects were present in the nr2f1b and nr2f2 mutants. Acridine orange staining revealed enhanced cell death in the brain and/or eyes in all nr2f homozygous mutants. The expression of regional markers in the brain did not suggest global defects in brain regionalization; however, shha expression in the preoptic area and hypothalamus, as well as fgf8a expression in the anterior telencephalon, was disturbed in nr2f1a and nr2f1b mutants, potentially leading to a defective telencephalon. Specification of the retina and optic stalk was also significantly affected. The overexpression of nr2f1b by injection of mRNA disrupted the anterior brain at a high dose, and the expression of pax6a in the eyes and fgf8a in the telencephalon at a low dose. The results of these loss- and gain-of-function approaches showed that nr2f genes regulate the development of the telencephalon and eyes in zebrafish embryos.

核受体亚家族 2 F 组(Nr2f)蛋白对小鼠的大脑发育至关重要,但人们对它们的确切作用及其进化多样性知之甚少。本研究调查了斑马鱼早期大脑发育过程中主要 nr2f 基因(nr2f1a、nr2f1b 和 nr2f2)的表达模式。对它们的表达模式进行比较后发现,在大脑早期体节阶段之后,它们的表达模式相似,但在时间和空间上各不相同。利用 CRISPR/Cas9 方法实现了三个 nr2f 基因的帧移位突变,结果发现 nr2f1a 突变体的端脑较小,眼睛也较小;nr2f1b 和 nr2f2 突变体的这些缺陷较轻。吖啶橙染色显示,在所有nr2f同源突变体中,大脑和/或眼睛中的细胞死亡都有所增加。大脑中区域标记物的表达并不表明大脑区域化存在整体缺陷;然而,nr2f1a和nr2f1b突变体视前区和下丘脑中shha的表达以及端脑前部fgf8a的表达受到干扰,可能导致端脑缺陷。视网膜和视茎的规格化也受到显著影响。通过注射mRNA过表达nr2f1b,在高剂量下会破坏前脑,在低剂量下会破坏眼睛中pax6a和端脑中fgf8a的表达。这些功能缺失和功能增益方法的结果表明,nr2f基因调控斑马鱼胚胎端脑和眼睛的发育。
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引用次数: 0
Efficient detection of single nucleotide variants in targeted genomic loci 高效检测目标基因组位点的单核苷酸变异。
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-20 DOI: 10.1111/dgd.12910
Ryota Sone, Saori Fujimaki, Atsuo Kawahara

Single nucleotide variants (SNVs), including single nucleotide polymorphisms, are often associated with morphological and/or physiological abnormalities in various organisms. Targeted genomic DNA can be amplified and directly sequenced to detect these mutations, but this method is relatively time consuming and expensive. We recently established the heteroduplex mobility assay to detect genetic mutations as an easy, low-cost method in genome editing, but detecting such small genetic differences remains difficult. Here, we developed a new, simple method to detect single nucleotide changes in the zebrafish genome by polymerase chain reaction (PCR) and electrophoresis. We first designed a specific single stranded DNA with four tandem guanine nucleotides inserted beside the mutation site, called guanine-inserted primer (GIP). When reannealing, hybridized complexes of GIP and PCR amplicons with or without 1-bp-mutated alleles form different bulge structures, presumably leading to different mobilities on a polyacrylamide gel. This GIP-interacting mobility assay is easy to use; therefore, it could contribute to the detection of SNVs in any organism.

单核苷酸变异(SNV),包括单核苷酸多态性,通常与各种生物的形态和/或生理异常有关。可以通过扩增靶向基因组 DNA 并直接测序来检测这些变异,但这种方法相对耗时且昂贵。我们最近建立了检测基因突变的异质双链迁移率测定法,作为基因组编辑中一种简便、低成本的方法,但检测这种微小的基因差异仍然很困难。在这里,我们开发了一种新的、简单的方法,通过聚合酶链反应(PCR)和电泳来检测斑马鱼基因组中的单核苷酸变化。我们首先设计了一种特定的单链 DNA,在突变位点旁插入四个串联鸟嘌呤核苷酸,称为鸟嘌呤插入引物(GIP)。当重新接合时,GIP 与含有或不含 1-bp 突变等位基因的 PCR 扩增子的杂交复合物会形成不同的隆起结构,这可能会导致聚丙烯酰胺凝胶上不同的流动性。这种 GIP 相互作用迁移率检测方法易于使用,因此有助于检测任何生物体中的 SNV。
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引用次数: 0
Progress in leukodystrophies with zebrafish 斑马鱼白质营养不良症研究进展。
IF 2.5 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2024-01-19 DOI: 10.1111/dgd.12907
Hung-Yu Shih, Quentin Raas, Joshua L. Bonkowsky

Inherited leukodystrophies are genetic disorders characterized by abnormal white matter in the central nervous system. Although individually rare, there are more than 400 distinct types of leukodystrophies with a cumulative incidence of 1 in 4500 live births. The pathophysiology of most leukodystrophies is poorly understood, there are treatments for only a few, and there is significant morbidity and mortality, suggesting a critical need for improvements in this field. A variety of animal, cell, and induced pluripotent stem cell-derived models have been developed for leukodystrophies, but with significant limitations in all models. Many leukodystrophies lack animal models, and extant models often show no or mixed recapitulation of key phenotypes. Zebrafish (Danio rerio) have become increasingly used as disease models for studying leukodystrophies due to their early onset of disease phenotypes and conservation of molecular and neurobiological mechanisms. Here, we focus on reviewing new zebrafish disease models for leukodystrophy or models with recent progress. This includes discussion of leukodystrophy with vanishing white matter disease, X-linked adrenoleukodystrophy, Zellweger spectrum disorders and peroxisomal disorders, PSAP deficiency, metachromatic leukodystrophy, Krabbe disease, hypomyelinating leukodystrophy-8/4H leukodystrophy, Aicardi–Goutières syndrome, RNASET2-deficient cystic leukoencephalopathy, hereditary diffuse leukoencephalopathy with spheroids-1 (CSF1R-related leukoencephalopathy), and ultra-rare leukodystrophies. Zebrafish models offer important potentials for the leukodystrophy field, including testing of new variants in known genes; establishing causation of newly discovered genes; and early lead compound identification for therapies. There are also unrealized opportunities to use humanized zebrafish models which have been sparsely explored.

遗传性白质营养不良症是以中枢神经系统白质异常为特征的遗传性疾病。虽然每种白质营养不良症都很罕见,但目前有超过 400 种不同类型的白质营养不良症,累计发病率为每 4500 个活产婴儿中就有 1 例。人们对大多数白质营养不良症的病理生理学知之甚少,只有少数几种白质营养不良症有治疗方法,而且发病率和死亡率都很高,这表明该领域亟需改进。目前已针对白质营养不良症开发出多种动物、细胞和诱导多能干细胞衍生模型,但所有模型都存在明显的局限性。许多白质营养不良症缺乏动物模型,而现存的模型往往不能重现关键表型或重现程度参差不齐。斑马鱼(Danio rerio)由于发病早、分子和神经生物学机制保持不变,已越来越多地被用作研究白质营养不良症的疾病模型。在此,我们将重点回顾新的斑马鱼白营养不良症疾病模型或最近取得进展的模型。其中包括白质消失性白质营养不良症、X 连锁肾上腺脑白质营养不良症、泽尔韦格谱系障碍和过氧化物酶体障碍、PSAP 缺乏症、变色性白质营养不良症、克拉伯病、8/4H白质营养不良症、艾卡迪-古蒂耶尔综合征、RNASET2缺陷性囊性白质脑病、遗传性弥漫性球形白质脑病-1(CSF1R相关性白质脑病)以及超罕见白质营养不良症。斑马鱼模型为白质营养不良症领域提供了重要的潜力,包括测试已知基因的新变异;确定新发现基因的因果关系;以及早期识别治疗的先导化合物。此外,使用人源化斑马鱼模型还有一些尚未实现的机会,但这方面的探索还很少。
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引用次数: 0
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Development Growth & Differentiation
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