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GLI3 in Archaic Humans: Possible Contributions to Human Skeletal and Brain Evolution 古人类中的GLI3:对人类骨骼和大脑进化的可能贡献。
IF 1 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-06-23 DOI: 10.1111/dgd.70015
Tadashi Nomura, Ako Agata, Nguyen Thi My Trinh

Neanderthals, an extinct hominid, lived in Eurasia until about 40,000 years ago. According to fossils, Neanderthals had distinctive anatomical features compared to modern humans, including a long front-to-back cranium, low frontal bones, and strong skeletal formation. Furthermore, Neanderthals had large brains similar to those of modern humans, but their brain morphology was different from ours, suggesting that they had different cognitive abilities than modern humans. Recent archaic human genome analysis has unveiled genetic changes underlying Neanderthals' or modern human–specific anatomical and physiological traits. In this review, we focus on the role of GLI3, a key molecule that mediates Hedgehog signaling during vertebrate organogenesis. We discuss possible contributions of GLI3-mediated hedgehog signaling to human anatomical diversifications, including neocortical structures, which provide insights into the genetic and developmental bases for modern human evolution.

尼安德特人是一种已经灭绝的人科动物,一直生活在欧亚大陆,直到大约4万年前。根据化石,与现代人相比,尼安德特人具有独特的解剖特征,包括前后较长的头盖骨,较低的额骨和强壮的骨骼结构。此外,尼安德特人的大脑与现代人相似,但他们的大脑形态与现代人不同,这表明他们的认知能力与现代人不同。最近的古人类基因组分析揭示了尼安德特人或现代人特有的解剖和生理特征的遗传变化。在这篇综述中,我们将重点关注GLI3在脊椎动物器官发生过程中的作用,GLI3是介导Hedgehog信号传导的关键分子。我们讨论了gli3介导的刺猬信号传导对人类解剖分化的可能贡献,包括新皮层结构,这为现代人类进化的遗传和发育基础提供了见解。
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引用次数: 0
Syncytin-1 Is Responsible for the Fusion Between Human Trophoblasts and Endometrial Stromal Cells 合胞素-1参与人滋养细胞与子宫内膜间质细胞的融合。
IF 1.7 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-06-12 DOI: 10.1111/dgd.70014
Akira Oike, Shun Shibata, Takahiro Arima, Hiroaki Okae

Syncytiotrophoblasts (STs) are multinucleated cells formed by the fusion of trophoblasts and play critical roles in placental development and function. Retrovirus-derived fusogenic proteins, known as syncytins, regulate trophoblast fusion by interacting with specific receptors. In humans, two syncytins, Syncytin-1 (Syn1) and Syncytin-2 (Syn2), have been identified. Although both are considered to be involved in ST formation, the expression patterns of Syn1, Syn2, and their receptors differ significantly, suggesting that Syn1 and Syn2 may have distinct roles. To investigate the functional differences of syncytins in human trophoblasts, we generated Syn1 and Syn2 knockout (KO) human trophoblast stem cells (hTSCs). ST differentiation assays revealed that Syn2 plays a predominant role in trophoblast-trophoblast fusion. We also examined the fusion between hTSCs and endometrial stromal cells (EMSCs), as trophoblasts and EMSCs interact directly during implantation, and genes encoding Syn1 and Syn2 receptors are expressed in EMSCs. This analysis revealed that hTSCs do fuse with EMSCs, and in contrast to trophoblast-trophoblast fusion, Syn1 plays a predominant role in trophoblast-EMSC fusion. Given that fusion-capable Syn1 is found only in primates whose embryos invade deep into the uterus, we hypothesize that Syn1 may be more involved in implantation rather than in trophoblast-trophoblast fusion.

合体滋养层细胞是由滋养层细胞融合形成的多核细胞,在胎盘发育和功能中起重要作用。逆转录病毒衍生的融合蛋白,被称为合胞素,通过与特定受体相互作用来调节滋养细胞融合。在人类中,已经鉴定出两种合胞素,Syncytin-1 (Syn1)和Syncytin-2 (Syn2)。虽然两者都被认为参与ST的形成,但Syn1、Syn2及其受体的表达模式存在显著差异,这表明Syn1和Syn2可能具有不同的作用。为了研究人类滋养细胞中合胞素的功能差异,我们制备了Syn1和Syn2敲除(KO)的人类滋养细胞干细胞(hTSCs)。ST分化实验显示Syn2在滋养细胞与滋养细胞融合中起主导作用。我们还研究了hTSCs与子宫内膜基质细胞(EMSCs)之间的融合,因为滋养细胞和EMSCs在植入过程中直接相互作用,并且编码Syn1和Syn2受体的基因在EMSCs中表达。该分析显示hTSCs确实与emsc融合,并且与滋养层-滋养层融合不同,Syn1在滋养层- emsc融合中起主导作用。鉴于具有融合能力的Syn1仅在胚胎侵入子宫深处的灵长类动物中发现,我们假设Syn1可能更多地参与植入而不是滋养层细胞与滋养层细胞的融合。
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引用次数: 0
Step-by-Step Protocol for Making a Knock-In Xenopus laevis to Visualize Endogenous Gene Expression 一步一步的协议,使敲入非洲爪蟾可视化内源性基因表达。
IF 1.7 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-06-09 DOI: 10.1111/dgd.70011
Norie Kagawa, Yoshihiko Umesono, Ken-ichi T. Suzuki, Makoto Mochii

We established a novel knock-in technique, New and Easy Xenopus Targeted integration (NEXTi), to recapitulate endogenous gene expression by reporter expression. NEXTi is a CRISPR-Cas9-based method to integrate a donor DNA containing a reporter gene (egfp) into the target 5′ untranslated region (UTR) of the Xenopus laevis genome. It enables us to track eGFP expression under the regulation of endogenous promoter/enhancer activities. We obtained about 2% to 13% of knock-in vector-injected embryos showing eGFP signal in a tissue-specific manner, targeting krt.12.2.L, myod1.S, sox2.L, and bcan.S loci, as previously reported. In addition, F1 embryos which show stable eGFP signals were obtained by outcrossing the matured injected frogs with wild-type animals. Integrations of donor DNAs into target 5′ UTRs were confirmed by PCR amplification and sequencing. Here, we describe the step-by-step protocol for preparation of donor DNA and single guide RNA, microinjection, and genotyping of F1 animals for the NEXTi procedure.

我们建立了一种新的敲入技术,新的和简单的Xenopus靶向整合(NEXTi),通过报告基因表达来概括内源性基因的表达。NEXTi是一种基于crispr - cas9的方法,将含有报告基因(egfp)的供体DNA整合到非洲爪蟾基因组的目标5'非翻译区(UTR)中。它使我们能够跟踪内源性启动子/增强子活性调控下的eGFP表达。我们获得了约2%至13%的敲入载体注射胚胎,以组织特异性的方式显示eGFP信号,靶向krt.12.2。L myod1。年代,sox2。L和bcan。S位点,如先前报道。此外,将成熟的注射青蛙与野生型动物异种杂交获得了具有稳定eGFP信号的F1胚胎。通过PCR扩增和测序证实供体dna整合到目标5' utr中。在这里,我们描述了一步一步的方案,准备供体DNA和单向导RNA,显微注射,和F1动物的基因分型为nextti程序。
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引用次数: 0
Optimization of Culture and Transfection Methods for Primary Snake Cells 蛇原代细胞培养和转染方法的优化。
IF 1.7 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-06-09 DOI: 10.1111/dgd.70013
Shoma Kuriyama, Keisuke Shigematsu, Seung June Kwon, Ryusei Kuwata, Yuji Atsuta

Snakes serve as important models for understanding how changes in genes and genome sequences drive vertebrate morphological evolution. However, the lack of established primary culture methods and gene delivery techniques for snake cells has hindered functional analyses of evolutionarily modified genes and genomic elements. Here, we optimized primary culture conditions and screened for efficient transfection methods using corn snake embryonic fibroblasts. Our culture optimization experiments revealed that TeSR medium, designed for stem cells, with fetal bovine serum supplementation and incubation at 28°C provided a suitable condition for primary snake fibroblasts. Transcriptome analysis further demonstrated that under this optimized condition, genes associated with cytoskeletal organization, extracellular matrix components, and sterol biosynthetic process were upregulated, likely promoting snake cell proliferation. Additionally, screening of various gene transfection methods identified two chemical transfection reagents and an electroporation technique that yielded high plasmid introduction efficiency in cultured snake fibroblasts. These findings enhance the utility of snake cells and pave the way for functional analyses of genes and genomic elements using snake cell-based systems.

蛇是理解基因和基因组序列变化如何驱动脊椎动物形态进化的重要模型。然而,缺乏成熟的蛇细胞原代培养方法和基因传递技术阻碍了进化修饰基因和基因组元件的功能分析。本研究优化了原代培养条件,筛选了玉米蛇胚成纤维细胞转染的有效方法。我们的培养优化实验表明,为干细胞设计的TeSR培养基,添加胎牛血清并在28°C孵育为原代蛇成纤维细胞提供了合适的条件。转录组分析进一步表明,在此优化条件下,与细胞骨架组织、细胞外基质成分和甾醇生物合成过程相关的基因上调,可能促进了蛇细胞的增殖。此外,筛选了多种基因转染方法,确定了两种化学转染试剂和一种电穿孔技术,在培养的蛇成纤维细胞中产生了高的质粒导入效率。这些发现增强了蛇细胞的效用,并为利用蛇细胞为基础的系统进行基因和基因组元件的功能分析铺平了道路。
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引用次数: 0
Transcriptome Analysis Suggested Striking Transition Around the End of Epiboly in the Gene Regulatory Network Downstream of the Oct4-Type POU Gene in Zebrafish Embryos 转录组分析表明,斑马鱼胚胎中oct4型POU基因下游的基因调控网络在表观代谢末端发生了惊人的转变。
IF 1.7 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-06-09 DOI: 10.1111/dgd.70012
Masaaki Ikeda, Kana Kobayashi, Yukiko Nakayama-Sadakiyo, Yuto Sato, Ayano Tobita, Mika Saito, Kyo Yamasu

Zebrafish pou5f3 encodes a Class V POU transcription factor, Pou5f3, which regulates various developmental processes, including neurogenesis and brain formation. In the current study, we attempted to comprehensively identify the Pou5f3 downstream genes around the end of epiboly, when the competence of the mid-hindbrain region to Pou5f3 suppression changes drastically, by the microarray method and a heat-inducible dominant-interference pou5f3 gene (en-pou5f3) that functionally suppresses pou5f3. At late epiboly and early somitogenesis stages, we identified genes whose expression was altered in en-pou5f3-induced embryos, revealing numerous genes regulated differently by Pou5f3 at the two stages. The validity of the microarray data was confirmed by whole mount in situ hybridization and quantitative RT-PCR. Many of the downstream genes were implicated by the Gene ontology (GO) analyses in transcriptional regulation and neural development and were enriched with sox genes and bHLH genes such as her genes. Interestingly, we noticed a tendency that Notch-dependent her genes were activated, whereas Notch-independent her genes were downregulated by Pou5f3 suppression. Among the Notch-independent her genes, her3, which is orthologous to mammalian Hes3, was suggested to be strongly activated endogenously by Pou5f3. In the upstream DNA of this gene, we found two noncoding conserved sequences (NCRs), which harbored consensus binding sites for Pou5f3, Sox, and Nanog. We further showed in reporter assays that the transcriptional regulatory activity of the her3 upstream DNA was strongly enhanced by SoxB1, and this SoxB1-mediated activation was weakened by Pou5f3. Deletion experiments showed that both upstream NCRs were involved in transcriptional repression.

斑马鱼的pou5f3编码一种V类POU转录因子pou5f3,它调节各种发育过程,包括神经发生和脑形成。在本研究中,我们试图通过微阵列技术和热诱导显性干扰型Pou5f3基因(en-pou5f3),全面鉴定在表观代谢末期,即中后脑区对Pou5f3抑制能力发生剧烈变化时的Pou5f3下游基因。在表观发育晚期和躯体发育早期,我们发现了在en- Pou5f3诱导的胚胎中表达改变的基因,揭示了许多在这两个阶段受到Pou5f3不同调控的基因。通过全载原位杂交和定量RT-PCR验证了芯片数据的有效性。许多下游基因被基因本体(GO)分析涉及转录调控和神经发育,并且富含sox基因和bHLH基因,如她的基因。有趣的是,我们注意到一个趋势,即notch依赖性的her基因被激活,而notch非依赖性的her基因被Pou5f3抑制而下调。在与notch无关的her基因中,与哺乳动物Hes3同源的her3被认为是由Pou5f3内源性强烈激活的。在该基因的上游DNA中,我们发现了两个非编码保守序列(NCRs),其中包含Pou5f3、Sox和Nanog的一致结合位点。我们进一步在报告基因实验中发现,SoxB1强烈增强了her3上游DNA的转录调控活性,而这种SoxB1介导的激活被Pou5f3削弱。缺失实验表明,这两个上游ncr都参与了转录抑制。
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引用次数: 0
Measuring intraventricular pressure in developing mouse embryos: Uncovering a repetitive mechanical cue for brain development 测量发育中的小鼠胚胎的脑室内压力:揭示大脑发育的重复机械线索。
IF 1.7 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-05-13 DOI: 10.1111/dgd.70010
Mami Akaike, Jun Hatakeyama, Yuta Nakashima, Kenji Shimamura

In living organisms, including humans, the developmental processes that construct their morphology from a single fertilized egg are influenced not only by genetic regulation but also by various external factors. One such factor is mechanical stimulation. Although mechanical forces are suggested to contribute to brain formation during development, quantitative information on intraventricular pressure during neurogenesis remains limited. We developed a high time-resolution system efficiently using a piezoresistive sensor to measure brain intraventricular pressure in mouse embryos from E12.5 to E16.5 (embryonic stages in days). Ex utero measurements revealed intraventricular pressure increasing from 53.76 ± 4.16 Pa at E12.5 to 158.10 ± 19.94 Pa by E16.5. In utero analyses uncovered striking periodicity in sync with uterine contractions, reaching up to 1430 ± 195.2 Pa at E12.5, indicating dynamic mechanical stimuli beyond ex utero observations. Additionally, perforation experiments at E9.0–E15.5 showed rapid neuroepithelial thickening and apical surface contraction upon pressure release, indicative of a tensile effect by the positive intraventricular pressure. This effect diminished after E15.5, implying that tension wanes or the neuroepithelium becomes more robust. These results highlight the dynamic nature of embryonic intraventricular pressure, governed by internal fluid production and uterine forces, and emphasize the importance of mechanical cues in neuroepithelial architecture. Our findings provide a steppingstone to clarify how mechanical forces integrate with genetic and molecular processes to shape normal brain development and may render new perspectives on brain evolution.

在包括人类在内的生物体中,从单个受精卵构建其形态的发育过程不仅受到遗传调控的影响,还受到各种外部因素的影响。其中一个因素是机械刺激。虽然机械力被认为在发育过程中有助于大脑的形成,但神经发生过程中脑室内压力的定量信息仍然有限。我们开发了一种高时间分辨率的系统,有效地使用压阻式传感器来测量E12.5至E16.5(胚胎期)的小鼠胚胎的脑室内压力。体外测量显示,脑室内压力从E12.5时的53.76±4.16 Pa增加到E16.5时的158.10±19.94 Pa。在子宫内的分析发现了与子宫收缩同步的惊人周期性,在E12.5时达到1430±195.2 Pa,表明动态机械刺激超出了子宫外观察。此外,E9.0-E15.5的穿孔实验显示,压力释放后神经上皮迅速增厚,根尖表面收缩,表明脑室内正压的拉伸作用。这种效应在E15.5后减弱,这意味着张力减弱或神经上皮变得更加强健。这些结果强调了胚胎脑室内压力的动态性,由内部流体产生和子宫力控制,并强调了机械线索在神经上皮结构中的重要性。我们的发现为阐明机械力如何与遗传和分子过程相结合来塑造正常的大脑发育提供了一个垫脚石,并可能为大脑进化提供新的视角。
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引用次数: 0
The long-term survival of enteroendocrine cells depends on their subtype and is linked to peripheral sensory innervation 肠内分泌细胞的长期存活取决于其亚型,并与外周感觉神经支配有关。
IF 1.7 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-05-07 DOI: 10.1111/dgd.70009
Salsabila Luthfi Sesotyosari, Masato Kinoshita, Mukhamad Sunardi, Mo Lihan, Akimasa Orii, Takaya Abe, Hiroshi Kiyonari, Tatsuya Nakai, Toshihiro Uesaka, Yuzo Kodama, Hideki Enomoto

Enteroendocrine cells (EECs) are sensory epithelial cells that sense the gut luminal environment and convey sensory information to the brain via the visceral afferent pathway. Although EECs are a part of gut epithelial cells, which generally undergo rapid turnover, some EECs have been reported to be long-lived. EECs consist of multiple subtypes, each of which displays distinct hormone production and distribution patterns. It remains unknown whether a long lifespan is a characteristic shared by all EEC subtypes. To address this issue, we conducted genetic pulse labeling of three EEC subtypes expressing serotonin (5-HT), peptide YY (PYY), and gastric inhibitory polypeptide (GIP) in mice and tracked their survival. In the proximal small intestine, all labeled GIP+ EECs disappeared completely within 5 days, whereas some PYY+ EECs survived for more than 7 days. In the proximal colon, some labeled 5-HT+ EECs lived for more than 28 days, whereas no PYY+ cells survived beyond 14 days. These long-lived 5-HT+ EECs were almost exclusively found in the upper half of the crypt in the mucosal fold, where visceral sensory fibers were enriched. This study reveals subtype- and region-dependent survival of EECs and suggests that EEC–nerve communication may underlie the long lifespan of certain EECs.

肠内分泌细胞(EECs)是一种感觉上皮细胞,它能感知肠道环境,并通过内脏传入途径将感觉信息传递给大脑。虽然EECs是肠道上皮细胞的一部分,通常经历快速的更新,但一些EECs有报道是长寿命的。EECs由多个亚型组成,每个亚型都表现出不同的激素产生和分布模式。长寿命是否是所有EEC亚型共有的特征尚不清楚。为了解决这一问题,我们对小鼠中表达5-羟色胺(5-HT)、YY肽(PYY)和胃抑制多肽(GIP)的三种EEC亚型进行了遗传脉冲标记,并追踪了它们的存活情况。在小肠近端,所有标记的GIP+ EECs在5天内完全消失,而一些标记的PYY+ EECs存活超过7天。在近端结肠中,一些标记的5-HT+ EECs存活超过28天,而PYY+细胞没有存活超过14天。这些长寿命的5-HT+ EECs几乎只存在于粘膜褶隐窝的上半部分,在那里内脏感觉纤维丰富。这项研究揭示了脑脊膜细胞的亚型和区域依赖性存活,并表明脑脊膜细胞-神经通讯可能是某些脑脊膜细胞长寿的基础。
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引用次数: 0
Waves of innovation and collaboration: Zebrafish research converges in Kyoto 创新与合作浪潮:斑马鱼研究汇聚京都。
IF 1.7 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-05-05 DOI: 10.1111/dgd.70008
Takuya Kaneko

The 18th International Zebrafish Conference “IZFC2024” was held in Kyoto from August 17 to 21, 2024.

第18届国际斑马鱼大会(IZFC2024)于2024年8月17日至21日在日本京都召开。
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引用次数: 0
Efficient CRISPR/Cas9-mediated knockin of reporter genes in rats at ROSA26 by pronuclear microinjection 原核微注射CRISPR/ cas9介导的ROSA26大鼠报告基因敲入
IF 1.7 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-04-23 DOI: 10.1111/dgd.70007
Takaya Abe, Ken-ichi Inoue, Hiroshi Kiyonari

The genetic modification of rats is a key technology for advancing biomedical research on human diseases. CRISPR/Cas9-mediated genome editing enables the generation of knockout rats in a single step, without the need for embryonic stem cells, by directly injecting genome editing components into zygotes. This simplifies the process, reduces costs, and accelerates gene function analysis in rats. However, the insertion of a gene cassette into a target site has remained inefficient, limiting the generation of knockin (KI) rats. To overcome this issue, we developed an optimized method that covers the entire process from zygote harvesting with superovulation to timed microinjection, ensuring the consistent generation of KI rats. We successfully generated four different fluorescent reporter lines at the ROSA26 locus in rats. Our study provides detailed, step-by-step protocols for donor vector design, zygote collection, microinjection, founder screening, and cryopreservation in rats.

大鼠基因改造是推进人类疾病生物医学研究的一项关键技术。CRISPR/ cas9介导的基因组编辑通过将基因组编辑成分直接注入受精卵,无需胚胎干细胞,即可一步产生基因敲除大鼠。这简化了过程,降低了成本,并加快了对大鼠基因功能的分析。然而,将基因盒插入目标位点仍然效率低下,限制了敲入(KI)大鼠的产生。为了克服这一问题,我们开发了一种优化的方法,该方法涵盖了从超排卵收集受精卵到定时显微注射的整个过程,确保了KI大鼠的一致生成。我们成功地在大鼠的ROSA26位点上生成了四种不同的荧光报告系。我们的研究为供体载体设计、受精卵收集、显微注射、创始人筛选和大鼠冷冻保存提供了详细的、一步一步的方案。
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引用次数: 0
Integrative approaches in Xenopus-based research: A report from the 1st Asian Xenopus Conference 基于章鱼研究的综合方法:第一届亚洲爪蟾大会报告。
IF 1.7 4区 生物学 Q4 CELL BIOLOGY Pub Date : 2025-04-03 DOI: 10.1111/dgd.70006
Dong Gil Jang, Hyo Jung Sim, Keun Yeong Kwon

The first Asian community conference on “Scientific research using Xenopus as an animal model system” was held in Osaka, Japan, from November 24 to 26, 2024. This event was organized by the Korean Society for Xenopus Development of KSMCB (Korean Society for the Molecular and Cellular Biology), Xenopus Community in Japan (XCIJ), KNU G-LAMP Project, National BioResource Project—Clawed frogs/Newts (NBRP), and Osaka University. The conference covered various research topics in biological sciences using Xenopus. The ultimate goal of this conference was to promote collaboration and encourage a new and sustainable relationship among researchers in the Asian region who utilize Xenopus in their studies by sharing scientific findings. The conference not only shared research findings from various biological fields in the Asian region but also provided opportunities to invite global experts in the Xenopus research for “Keynote Lectures” and rising researchers who use other animal models for the “Friends of Xenopus” session to foster interdisciplinary exchange. In addition, organizers planned a luncheon seminar to help trainee students learn how to write a scientific paper and how not to.

2024年11月24日至26日,首届“以非洲爪蟾为动物模型系统的科学研究”亚洲共同体会议在日本大阪举行。此次活动是由韩国分子细胞生物学学会(KSMCB)的韩国爪蟾开发学会、日本爪蟾群落(XCIJ)、KNU G-LAMP计划、国家生物资源计划爪蟾/蝾螈(NBRP)、大阪大学共同举办的。会议涵盖了利用爪蟾进行生物科学的各种研究课题。本次会议的最终目标是通过分享科学发现,促进亚洲地区利用非洲爪蟾进行研究的研究人员之间的合作和鼓励一种新的可持续的关系。会议不仅分享了亚洲地区各生物领域的研究成果,还提供了邀请全球爪蟾研究专家进行“主题演讲”的机会,并邀请了使用其他动物模型的新兴研究人员参加“爪蟾之友”会议,以促进跨学科交流。此外,组织者还计划了一个午餐研讨会,帮助实习学生学习如何写科学论文,以及如何不写。
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引用次数: 0
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Development Growth & Differentiation
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