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Opening the gate: Complexity and modularity of the nuclear pore scaffold and basket. 打开大门:核孔支架和筐的复杂性和模块化。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-01-17 DOI: 10.1016/j.ceb.2024.102461
Elisa Dultz, Valérie Doye

Nuclear pore complexes (NPCs) are giant molecular assemblies that form the gateway between the nucleus and the cytoplasm and accommodate the bidirectional transport of a large variety of cargoes. Recent years have seen tremendous advances in our understanding of their building principles and have in particular called attention to the flexibility and variability of NPC composition and structure. Here, we review these recent advances and discuss how the newest technologies push the boundaries of nuclear pore research forward, with a specific highlight on the NPC scaffold and a prominent pore appendage, the nuclear basket, whose architecture has long been elusive.

核孔复合物(NPCs)是一种巨大的分子组合物,形成细胞核和细胞质之间的通道,并容纳各种货物的双向运输。近年来,我们对NPC建筑原则的理解取得了巨大进步,并特别关注NPC组成和结构的灵活性和可变性。在这里,我们回顾了这些最新的进展,并讨论了最新的技术如何推动核孔研究的边界向前发展,特别强调了NPC支架和一个突出的孔附件,核篮,其结构长期以来一直难以捉摸。
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引用次数: 0
Organization of the chromosomal passenger complex clusters at inner centromeres in mitosis. 有丝分裂中染色体内着丝粒的载客复合体簇的组织。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-01-15 DOI: 10.1016/j.ceb.2024.102462
Saho Matsui, Ryu-Suke Nozawa, Toru Hirota

Stable transmission of the genome during cell division is crucial for all life forms and is universally achieved by Aurora B-mediated error correction of the kinetochore-microtubule attachments. Aurora B is the enzymatic subunit of the tetrameric protein complex called the chromosomal passenger complex (CPC), and its centromeric enrichment is required for Aurora B to ensure accurate chromosome segregation. How cells enrich the CPC at centromeres is therefore an outstanding question to be elucidated. We review our recent understanding of how CPCs are assembled at inner centromeres in mitosis, the mechanism depending on mitotic histone phosphorylations and beyond.

在细胞分裂过程中,基因组的稳定传递对所有生命形式都是至关重要的,并且普遍通过极光b介导的着丝点-微管附着物的错误纠正来实现。Aurora B是四聚体蛋白复合物(称为染色体乘客复合物(CPC))的酶亚基,为了确保准确的染色体分离,Aurora B需要对其进行着丝粒富集。因此,细胞如何在着丝粒富集CPC是一个有待阐明的突出问题。我们回顾了我们最近对有丝分裂中CPCs如何在内部着丝粒组装的理解,其机制取决于有丝分裂组蛋白磷酸化等。
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引用次数: 0
Beyond static snapshots: Mitochondria in action. 超越静态快照:行动中的线粒体
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-12-29 DOI: 10.1016/j.ceb.2024.102460
Julien Cicero, Uri Manor

Mitochondria are dynamic organelles essential for cellular homeostasis, undergoing continuous fission and fusion processes that regulate their morphology, distribution, and function. Disruptions in these dynamics are linked to numerous diseases, including neurodegenerative disorders and cancer. Understanding these processes is vital for developing therapeutic strategies aimed at mitigating mitochondrial dysfunction. This review provides an overview of recent perspectives on mitochondrial dynamics, focusing on the need for live video microscopy imaging in order to fully understand mitochondrial phenotypes and pathology. Advanced imaging tools, such as machine learning-based segmentation and label-free microscopy approaches, have the potential to transform our ability to study mitochondrial dynamics in live cells.

线粒体是对细胞平衡至关重要的动态细胞器,它经历着连续的裂变和融合过程,这些过程调节着线粒体的形态、分布和功能。这些动态过程的破坏与多种疾病有关,包括神经退行性疾病和癌症。了解这些过程对于制定旨在缓解线粒体功能障碍的治疗策略至关重要。本综述概述了有关线粒体动力学的最新观点,重点关注为全面了解线粒体表型和病理而进行实时视频显微成像的必要性。先进的成像工具,如基于机器学习的分割和无标记显微镜方法,有可能改变我们研究活细胞线粒体动力学的能力。
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引用次数: 0
Prolonged mitosis: A key indicator for detecting stressed and damaged cells. 延长有丝分裂:检测受压和受损细胞的关键指标。
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-12-24 DOI: 10.1016/j.ceb.2024.102449
Carmen Sparr, Franz Meitinger

During mitosis, chromosomes condense, align to form a metaphase plate and segregate to the two daughter cells. Mitosis is one of the most complex recurring transformations in the life of a cell and requires a high degree of reliability to ensure the error-free transmission of genetic information to the next cell generation. An abnormally prolonged mitosis indicates potential defects that compromise genomic integrity. The mitotic stopwatch pathway detects even moderately prolonged mitoses by integrating memories of mitotic durations, ultimately leading to p53-mediated cell cycle arrest or death. This mechanism competes with mitogen signaling to stop the proliferation of damaged and potentially dangerous cells at a pre-oncogenic stage. Mitosis is a highly vulnerable phase, which is affected by multiple types of cellular damages and diverse stresses. We discuss the hypothesis that the duration of mitosis serves as an indicator of cell health.

在有丝分裂期间,染色体凝聚,排列形成中期板,并分离成两个子细胞。有丝分裂是细胞生命中最复杂的循环转化之一,需要高度的可靠性来确保遗传信息无错误地传递给下一代细胞。异常延长的有丝分裂表明潜在的缺陷损害了基因组的完整性。有丝分裂秒表通路通过整合有丝分裂持续时间的记忆来检测中度延长的有丝分裂,最终导致p53介导的细胞周期阻滞或死亡。这一机制与丝裂原信号竞争,在癌前阶段阻止受损和潜在危险细胞的增殖。有丝分裂是一个非常脆弱的阶段,它受到多种类型的细胞损伤和多种胁迫的影响。我们讨论了有丝分裂持续时间作为细胞健康指标的假设。
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引用次数: 0
Topological epigenetics: The biophysics of DNA supercoiling and its relation to transcription and genome instability.
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-12-12 DOI: 10.1016/j.ceb.2024.102448
Nick Gilbert, Davide Marenduzzo

Whilst DNA encodes our genetic blueprint as individual nucleobases, as well as epigenetic annotations in the form of biochemical marks, it also carries an extra layer of topological information -, the local over or underwinding of the double helix, known as DNA supercoiling. Supercoiling is a fundamental property of DNA that can be viewed as "topological epigenetics": it stores energy and structural information, and is tightly linked to fundamental processes; however, its quantification and study, by experiments and modelling alike, is challenging. We review experimental and simulation techniques to study supercoiling and its partition into twist and writhe, especially in the context of chromatin. We then discuss the dynamics of transcription-driven supercoiling in vitro and in vivo, and of supercoiling propagation along mammalian genomes. We finally provide evidence from the literature and potential mechanisms linking this ethereal topological mark to gene expression and chromosome instabilities in genetic diseases and cancer.

DNA 以单个核碱基的形式编码我们的遗传蓝图,并以生化标记的形式进行表观遗传注释,它还携带着一层额外的拓扑信息--双螺旋的局部上卷或下卷,即 DNA 超螺旋。超螺旋是 DNA 的一个基本特性,可被视为 "拓扑表观遗传学":它存储能量和结构信息,并与基本过程紧密相连;然而,通过实验和建模对其进行量化和研究却极具挑战性。我们回顾了研究超卷曲及其分为扭曲和缠绕的实验和模拟技术,尤其是在染色质的背景下。然后,我们讨论了体外和体内转录驱动的超卷曲动态,以及超卷曲沿哺乳动物基因组传播的动态。最后,我们将提供文献证据和潜在机制,证明这种虚无缥缈的拓扑标记与遗传疾病和癌症中的基因表达和染色体不稳定性有关。
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引用次数: 0
Unleashing XIST from X-chromosome inactivation 从 X 染色体失活中释放 XIST
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-27 DOI: 10.1016/j.ceb.2024.102446
Céline Morey, Claire Rougeulle, Jean-François Ouimette
Recognition that the most abundant class of genes present in the human genome are those producing long noncoding RNA (lncRNA) has hyped research on this category of transcripts. One such prototypical RNA, Xist, has particularly fueled interest. Initially characterized for its specific expression from the inactive X (Xi), recent studies have uncovered the molecular mechanisms underlying its essential role in the initiation of X-chromosome inactivation, from its exquisitely precise transcriptional regulation to the plethora of protein interactors forming the Xist ribonucleoprotein (RNP) that mediate its gene silencing activity. Here, we will discuss the recent advances that have broadened our knowledge of Xist functions, challenging classical models and revealing unsuspected, unconventional actions of its RNP.
人类基因组中最丰富的一类基因是产生长非编码 RNA(lncRNA)的基因,这一认识催生了对这类转录本的研究。其中一种典型的 RNA--Xist--尤其引起了人们的兴趣。最近的研究揭示了它在启动 X 染色体失活过程中发挥重要作用的分子机制,从其极其精确的转录调控到形成 Xist 核糖核蛋白(RNP)的大量蛋白相互作用者,这些都是其基因沉默活性的介导因素。在这里,我们将讨论最近的研究进展,这些进展拓宽了我们对 Xist 功能的认识,挑战了经典模型,并揭示了其 RNP 未曾预料到的非常规作用。
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引用次数: 0
Interplay between Notch signaling and mechanical forces during developmental patterning processes 发育模式过程中 Notch 信号与机械力之间的相互作用
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-27 DOI: 10.1016/j.ceb.2024.102444
Shahar Kasirer , David Sprinzak
The coordination between biochemical signals and cell mechanics has emerged in recent years as a crucial mechanism driving developmental patterning processes across a variety of developing and homeostatic systems. An important class of such developmental processes relies on local communication between neighboring cells through Notch signaling. Here, we review how the coordination between Notch-mediated differentiation and cell mechanics can give rise to unique cellular patterns. We discuss how global and local mechanical cues can affect, and be affected by, cellular differentiation and reorganization controlled by Notch signaling. We compare recent studies of such developmental processes, including the mammalian inner ear, Drosophila ommatidia, intestinal organoids, and zebrafish myocardium, to draw shared general concepts and their broader implications in biology.
近年来,生化信号和细胞机械之间的协调已成为驱动各种发育和平衡系统中发育模式化过程的重要机制。这类发育过程中的一个重要类别依赖于相邻细胞之间通过 Notch 信号进行的局部交流。在此,我们回顾了 Notch 介导的分化与细胞力学之间的协调如何产生独特的细胞模式。我们讨论了全局和局部机械线索如何影响并被 Notch 信号控制的细胞分化和重组所影响。我们比较了对此类发育过程的最新研究,包括哺乳动物内耳、果蝇膜、肠器官和斑马鱼心肌,从而得出共同的一般概念及其在生物学中的广泛意义。
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引用次数: 0
Design principles of regulatory networks underlying epithelial mesenchymal plasticity in cancer cells 癌细胞上皮间充质可塑性基础调控网络的设计原则
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-27 DOI: 10.1016/j.ceb.2024.102445
Sarthak Sahoo, Kishore Hari , Mohit Kumar Jolly
Phenotypic plasticity is a hallmark of cancer and drives metastatic disease and drug resistance. The dynamics of epithelial mesenchymal plasticity is driven by complex interactions involving multiple feedback loops in underlying networks operating at multiple regulatory levels such as transcriptional and epigenetic. The past decade has witnessed a surge in systems level analysis of structural and dynamical traits of these networks. Here, we highlight the key insights elucidated from such efforts—a) multistability in gene regulatory networks and the co-existence of many hybrid phenotypes, thus enabling a landscape with multiple ‘attractors’, b) mutually antagonistic ‘teams’ of genes in these networks, shaping the rates of cell state transition in this landscape, and c) chromatin level changes that can alter the landscape, thus controlling reversibility of cell state transitions, allowing cellular memory in the context of epithelial mesenchymal plasticity in cancer cells. Such approaches, in close integration with high-throughput longitudinal data, have improved our understanding of the dynamics of cell state transitions implicated in tumor cell plasticity.
表型可塑性是癌症的标志之一,是转移性疾病和耐药性的驱动因素。上皮间充质可塑性的动态是由在转录和表观遗传等多个调控水平上运行的底层网络中涉及多个反馈回路的复杂相互作用驱动的。过去十年间,对这些网络的结构和动态特征进行系统级分析的热潮席卷全球。在此,我们将重点介绍从这些研究中阐明的关键见解--a)基因调控网络的多稳定性和多种混合表型的共存,从而形成了具有多个 "吸引子 "的景观;b)这些网络中相互拮抗的基因 "团队",塑造了这一景观中的细胞状态转换率;c)染色质水平的变化可以改变景观,从而控制细胞状态转换的可逆性,使癌细胞上皮间质可塑性背景下的细胞记忆成为可能。这些方法与高通量纵向数据紧密结合,提高了我们对肿瘤细胞可塑性中细胞状态转换动态的理解。
{"title":"Design principles of regulatory networks underlying epithelial mesenchymal plasticity in cancer cells","authors":"Sarthak Sahoo,&nbsp;Kishore Hari ,&nbsp;Mohit Kumar Jolly","doi":"10.1016/j.ceb.2024.102445","DOIUrl":"10.1016/j.ceb.2024.102445","url":null,"abstract":"<div><div>Phenotypic plasticity is a hallmark of cancer and drives metastatic disease and drug resistance. The dynamics of epithelial mesenchymal plasticity is driven by complex interactions involving multiple feedback loops in underlying networks operating at multiple regulatory levels such as transcriptional and epigenetic. The past decade has witnessed a surge in systems level analysis of structural and dynamical traits of these networks. Here, we highlight the key insights elucidated from such efforts—a) multistability in gene regulatory networks and the co-existence of many hybrid phenotypes, thus enabling a landscape with multiple ‘attractors’, b) mutually antagonistic ‘teams’ of genes in these networks, shaping the rates of cell state transition in this landscape, and c) chromatin level changes that can alter the landscape, thus controlling reversibility of cell state transitions, allowing cellular memory in the context of epithelial mesenchymal plasticity in cancer cells. Such approaches, in close integration with high-throughput longitudinal data, have improved our understanding of the dynamics of cell state transitions implicated in tumor cell plasticity.</div></div>","PeriodicalId":50608,"journal":{"name":"Current Opinion in Cell Biology","volume":"92 ","pages":"Article 102445"},"PeriodicalIF":6.0,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142721374","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SMC-mediated chromosome organization: Does loop extrusion explain it all? SMC 介导的染色体组织:环状挤压能解释这一切吗?
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-26 DOI: 10.1016/j.ceb.2024.102447
Tatsuya Hirano, Kazuhisa Kinoshita
In recent years, loop extrusion has attracted much attention as a general mechanism of chromosome organization mediated by structural maintenance of chromosomes (SMC) protein complexes, such as condensin and cohesin. Despite accumulating evidence in support of this mechanism, it is not fully established whether or how loop extrusion operates under physiological conditions, or whether any alternative or additional SMC-mediated mechanisms operate in the cell. In this review, we summarize non-loop extrusion mechanisms proposed in the literature and clarify unresolved issues to further enrich our understanding of how SMC protein complexes work.
近年来,作为由染色体结构维持蛋白(SMC)复合物(如凝聚素和粘合素)介导的染色体组织的一般机制,环挤压引起了广泛关注。尽管有越来越多的证据支持这一机制,但目前尚未完全确定环挤压是否或如何在生理条件下运行,也未确定细胞中是否有任何替代或额外的 SMC 介导的机制。在这篇综述中,我们总结了文献中提出的非环路挤压机制,并澄清了尚未解决的问题,以进一步丰富我们对 SMC 蛋白复合物如何工作的理解。
{"title":"SMC-mediated chromosome organization: Does loop extrusion explain it all?","authors":"Tatsuya Hirano,&nbsp;Kazuhisa Kinoshita","doi":"10.1016/j.ceb.2024.102447","DOIUrl":"10.1016/j.ceb.2024.102447","url":null,"abstract":"<div><div>In recent years, loop extrusion has attracted much attention as a general mechanism of chromosome organization mediated by structural maintenance of chromosomes (SMC) protein complexes, such as condensin and cohesin. Despite accumulating evidence in support of this mechanism, it is not fully established whether or how loop extrusion operates under physiological conditions, or whether any alternative or additional SMC-mediated mechanisms operate in the cell. In this review, we summarize non-loop extrusion mechanisms proposed in the literature and clarify unresolved issues to further enrich our understanding of how SMC protein complexes work.</div></div>","PeriodicalId":50608,"journal":{"name":"Current Opinion in Cell Biology","volume":"92 ","pages":"Article 102447"},"PeriodicalIF":6.0,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142721373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mechanochemical control systems regulating animal cell size 调节动物细胞大小的机械化学控制系统
IF 6 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2024-11-06 DOI: 10.1016/j.ceb.2024.102443
Heather E. Rizzo , Andy L. Zhang , Margaret L. Gardel
Cell size regulation arises from physical manifestations of cell proliferation and metabolic pathways. On one hand, coordination between these systems yields a constant cell size over generations to maintain cell size homeostasis. However, active regulation of cell size is crucial to physiology and to establish broad variation of cell sizes within an individual organism, and is accomplished via physical and biochemical pathways modulated by myriad intrinsic and extrinsic cues. In this review, we explore recent data elucidating the mechanobiological regulation of the volume of animal cells and its coordination with metabolic and proliferative pathways.
细胞大小的调节来自细胞增殖和新陈代谢途径的物理表现。一方面,这些系统之间的协调产生了世代相传的恒定细胞大小,以维持细胞大小的平衡。然而,细胞大小的主动调控对生理学和在单个生物体内建立细胞大小的广泛差异至关重要,并通过由无数内在和外在线索调控的物理和生化途径来实现。在这篇综述中,我们将探讨阐明动物细胞体积的机械生物学调控及其与新陈代谢和增殖途径的协调的最新数据。
{"title":"Mechanochemical control systems regulating animal cell size","authors":"Heather E. Rizzo ,&nbsp;Andy L. Zhang ,&nbsp;Margaret L. Gardel","doi":"10.1016/j.ceb.2024.102443","DOIUrl":"10.1016/j.ceb.2024.102443","url":null,"abstract":"<div><div>Cell size regulation arises from physical manifestations of cell proliferation and metabolic pathways. On one hand, coordination between these systems yields a constant cell size over generations to maintain cell size homeostasis. However, active regulation of cell size is crucial to physiology and to establish broad variation of cell sizes within an individual organism, and is accomplished via physical and biochemical pathways modulated by myriad intrinsic and extrinsic cues. In this review, we explore recent data elucidating the mechanobiological regulation of the volume of animal cells and its coordination with metabolic and proliferative pathways.</div></div>","PeriodicalId":50608,"journal":{"name":"Current Opinion in Cell Biology","volume":"91 ","pages":"Article 102443"},"PeriodicalIF":6.0,"publicationDate":"2024-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142592009","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Current Opinion in Cell Biology
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