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Phylogenetic Classification of Living and Fossil Ray-Finned Fishes (Actinopterygii) 活体和化石鳐形鱼类(动角类)的系统发育分类
IF 1.3 4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-18 DOI: 10.3374/014.065.0101
Thomas J. Near, Christine E. Thacker
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引用次数: 1
Inventory and Assessment of the Pongo (Linnaeus, 1760) Skeletal Collection Housed at the Yale Peabody Museum 存放在耶鲁皮博迪博物馆的庞戈(林奈,1760年)骨骼收藏的清单和评估
4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2023-10-10 DOI: 10.3374/014.064.0201
Katharine Walls, Gary P. Aronsen
Museum collections are critical resources for examination of comparative anatomy, developmental biology, and life history hypotheses. Skeletal collections provide insight into spatiotemporal, species, population, and individual variation associated with environmental, social, and epidemiological history. For endangered species such as great apes, these collections provide data nearly impossible to replicate today. In this third in a series of articles reviewing the great ape holdings of the Yale Peabody Museum, we describe the Pongo skeletal collection. Nine catalog numbers in the collection represent nine individuals: two males, five females, and two individuals of indeterminate sex. Evidence of trauma, socioecology, metabolic stressors, infectious disease, and captive management issues are described in detail. The collection exhibits taxonomic diversity as well, with two species present. Our evaluation of the Yale Peabody Museum collection provides a baseline for future research and testable hypotheses for alternate techniques, such as isotopic analyses of dental calculus and noninvasive genetic testing. Museum collections continue to provide new insights into taxonomic and individual variation and environmental context, ultimately allowing for comparisons between modern and historical environmental and behavioral variables.
博物馆藏品是检验比较解剖学、发育生物学和生活史假说的重要资源。骨骼收藏提供了与环境、社会和流行病学历史相关的时空、物种、种群和个体变化的见解。对于类人猿等濒危物种来说,这些收集的数据在今天几乎是不可能复制的。在回顾耶鲁皮博迪博物馆收藏的类人猿系列文章的第三篇中,我们描述了庞戈的骨骼收藏。集合中的九个目录编号代表九个个体:两个男性,五个女性和两个性别不明的个体。详细描述了创伤、社会生态学、代谢应激源、传染病和圈养管理问题的证据。该集合也显示出分类多样性,有两个物种存在。我们对耶鲁皮博迪博物馆藏品的评估为未来的研究和替代技术的可测试假设提供了基线,例如牙结石的同位素分析和非侵入性基因检测。博物馆的藏品继续为分类、个体变异和环境背景提供新的见解,最终允许在现代和历史环境和行为变量之间进行比较。
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引用次数: 0
Lost and Found: Redescription of Chamasaurus dolichognathus Williston 1915 from the Permo-Carboniferous of New Mexico 失物招领:1915年新墨西哥州二叠纪-石炭纪的杜龙威利斯顿Chamasaurus dolichognathus Williston
IF 1.3 4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2023-04-04 DOI: 10.3374/014.064.0101
K. Jenkins, Dalton L. Meyer, Bhart‐Anjan S. Bhullar
Abstract Here we describe the “lost” holotype of Chamasaurus dolichognathus from the Permo-Carboniferous Cutler Group of El Cobre Canyon, New Mexico, USA. While C. dolichognathus has been suggested to be either an amniote or amphibian, we conclude that it is more likely a part of pan-Amniota. We also observe that there is little diagnostic material that would assign this specimen to a more specific clade, although the moderate degree of basal tooth infolding could prove to be of diagnostic utility if additional specimens are discovered. However, we declare the species as nomen dubium until such specimens are found.
摘要本文描述了美国新墨西哥州El Cobre峡谷二叠纪-石炭纪Cutler群中“丢失”的斑龙(Chamasaurus dolichognathus)的全型化石。虽然C. dolichognathus被认为是羊膜动物或两栖动物,但我们认为它更可能是泛羊膜动物的一部分。我们还观察到,很少有诊断材料将该标本分配到一个更具体的分支,尽管中等程度的基牙内折可能被证明是诊断实用,如果发现更多的标本。然而,在找到这样的标本之前,我们宣布该物种为nomen dubi。
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引用次数: 0
Species-Level Recognition and Redescription of the Kentucky Arrow Darter, Etheostoma spilotum Gilbert (Percidae: litocara) 肯塔基箭镖的种级识别与再描述(刺蚊科:刺蛛科)
IF 1.3 4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2023-04-04 DOI: 10.3374/014.064.0103
Matthew R. Thomas, R. Blanton, Ava Ghezelayagh, T. Near
Abstract The Kentucky Arrow Darter, Etheostoma spilotum, endemic to the upper Kentucky River basin of eastern Kentucky, is redescribed and recognized as a distinct species closely related to E. sagitta in the upper Cumberland River basin and E. nianguae in the Osage River drainage (Missouri River basin). Originally described as a subspecies of E. nianguae, it was later considered a full species and then a subspecies of E. sagitta, based on close geographic proximity to Cumberland basin populations and overlapping meristic variation interpreted as character intergradation. We present meristic, morphometric, and genetic data that support species-level recognition of E. spilotum. It differs from E. sagitta by lower counts of total and pored lateral scales, lower counts of caudal peduncle scales, fewer second dorsal-fin rays, and fewer pectoral-fin rays. Interspecific divergence of E. spilotum and E. sagitta is further demonstrated through analyses of variation in the mitochondrial nd2 gene and species delimitation using genome-wide double digest restriction-site associated DNA sequencing. Although allopatrically distributed, both species inhabit upland headwater streams on the Cumberland Plateau and have similar life history characteristics. Endemism, fragmented distributions, and low densities and genetic diversity within populations make these species extremely vulnerable to anthropogenic activities. Etheostoma spilotum was federally listed as threatened in 2016 due to degradation of stream habitat and water quality in the upper Kentucky basin that has eliminated the species from a significant portion of its range.
摘要对肯塔基州东部肯塔基河上游流域特有的肯塔基箭镖(Etheostoma spilotum)进行了重新描述,并将其视为与坎伯兰河上游流域的E. sagitta和密苏里河流域奥塞奇河流域的E. nianguae密切相关的独特物种。最初被描述为E. nianguae的一个亚种,后来被认为是一个完整的物种,然后是E. sagitta的一个亚种,基于与Cumberland盆地种群的密切地理接近和重叠的分生变异被解释为特征整合。我们提出分分,形态计量和遗传数据,支持种水平的识别。它与矢状海蛞蝓的不同之处在于总鳞片和有孔的侧鳞片数量较少,尾端花梗鳞片数量较少,第二背鳍射线较少,胸鳍射线较少。通过线粒体nd2基因的变异分析和使用全基因组双消化限制性位点相关DNA测序的物种划分,进一步证明了散叶蝉和矢状蝉的种间分化。虽然分布在不同的地方,但这两个物种都栖息在坎伯兰高原的高地源头溪流中,具有相似的生活史特征。地方性、分散分布、种群内的低密度和遗传多样性使这些物种极易受到人为活动的影响。2016年,由于肯塔基上游盆地的溪流栖息地和水质退化,该物种被联邦政府列为受威胁物种,这使得该物种从其活动范围的很大一部分中消失。
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引用次数: 0
A New Species of Spottail Darter Endemic to the Clarks River in Kentucky and Tennessee (Percidae: Etheostomatinae: Etheostoma) 肯塔基州和田纳西州克拉克河斑尾镖一新种特有种(鲈鱼科:斑尾目:斑尾鱼科)
IF 1.3 4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2023-04-04 DOI: 10.3374/014.064.0102
J. Wood, Richard C. Harrington, Zachariah D. Alley, Matthew R. Thomas, Jeffrey W. Simmons, T. Near
Abstract Etheostoma xanthovum, the Clarks Darter, is described as a new species endemic to the Clarks River drainage in Kentucky and Tennessee, USA. Etheostoma xanthovum was previously recognized as Etheostoma oophylax based on morphological characters. Subsequent to the description of E. oophylax, molecular phylogenetic analyses consistently resolved specimens from the Clarks River drainage and E. chienense as sister species, which together formed a sister clade to all other sampled populations of E. oophylax. Our analyses of morphological trait data, mitochondrial DNA, and genomic sampling using double digest restriction-site associated DNA sequencing support the distinctiveness of E. xanthovum. Morphologically, E. xanthovum differs slightly from E. oophylax in the modal number of dorsal fin rays (12 versus 11) and in the average number of scale rows around the caudal peduncle (21.8 versus 20.4). Etheostoma xanthovum does not share mitochondrial DNA haplotypes with E. oophylax or E. chienense. Phylogenomic analysis of an average of 28,448 double digest restriction-site associated DNA loci per sampled specimen resolves E. xanthovum and E. chienense as sister species, and assessment of genomic divergence supports the hypothesis that each of these two species represents a distinct and independently evolving lineage. In addition, we report a range extension of E. oophylax in the Obion River drainage, a direct tributary of the Mississippi River.
摘要黄颡鱼是美国肯塔基州和田纳西州Clarks河流域特有的一个新种。在描述卵门E.之后,分子系统发育分析一致地将Clarks河流域的标本和奇能E.作为姐妹物种,它们共同形成了卵门E.所有其他采样种群的姐妹分支。我们使用双消化限制性位点相关DNA测序对形态特征数据、线粒体DNA和基因组取样进行的分析支持了黄曲霉的独特性。从形态学上看,黄颡鱼与卵门鱼在背鳍鳐的模式数量(12对11)和尾梗周围鳞片的平均行数(21.8对20.4)方面略有不同。黄颡虫与卵门或奇能氏线虫不共享线粒体DNA单倍型。对每个样本平均28448个双消化限制性位点相关DNA基因座的系统发育基因组分析表明,黄曲霉和chinense是姐妹物种,对基因组差异的评估支持了这两个物种各自代表一个独特且独立进化的谱系的假设。此外,我们还报告了E.卵门菌在密西西比河的直接支流奥比恩河流域的范围扩展。
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引用次数: 0
Pedal Skeletal Proportions of Bipedal and Potentially Bipedal Dinosaurs and Other Archosaurs: Interpreting the Makers of Early Mesozoic Footprints 两足恐龙和潜在两足恐龙及其他始祖龙的踏板骨骼比例:解读中生代早期足迹的创造者
IF 1.3 4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2022-09-30 DOI: 10.3374/014.063.0201
J. Farlow, J. N. Lallensack, R. Müller, J. Hyatt
Abstract Dinosaur footprints often occur in Late Triassic–Early Jurassic continental sedimentary rocks. While many such tracks can readily be associated with the kinds of dinosaurs that made them, the makers of some footprints have been controversial. Large tridactyl (three-toed) footprints of the ichnogenus Eubrontes are thought by most paleontologists to have been made by theropod dinosaurs, but some workers think their makers were basal sauropodomorph (“prosauropod”) dinosaurs. The four-toed footprint Otozoum is usually interpreted as a prosauropod print, but some workers instead attribute it to an ornithischian (basal thyreophoran) dinosaur or even a pseudosuchian archosaur. These issues prompted us to do a new study of the proportions of the hindfeet of bipedal and potentially bipedal dinosaurs and other archosaurs, adding new measurements to previously available data. Foot skeletons of theropod dinosaurs differ from those of bipedal ornithischian dinosaurs in having relatively longer phalanges from the middle portions of toes, narrower phalanges, relatively shorter unguals, and a relatively shorter inner toe (digit I—but some members of both groups lose digit I altogether). Theropod feet differ from feet of prosauropods in having slightly narrower phalanges, relatively shorter unguals, and a relatively shorter digit I, but some smaller basal sauropodomorphs are harder to distinguish from theropods in these features. Feet of small to medium-sized ornithischians that retain digit I are very similar to those of most basal sauropodomorphs and also some pseudosuchians. Our results suggest that most (but perhaps not all) morphologically well-preserved Eubrontes are more likely to have been made by theropods than bipedal sauropodomorphs. It is more difficult to determine the most likely maker(s) of Otozoum.
摘要恐龙足迹经常出现在三叠纪晚期-侏罗纪早期的大陆沉积岩中。虽然许多这样的足迹很容易与制造它们的恐龙种类联系在一起,但一些足迹的制造者一直存在争议。大多数古生物学家认为,Eubrontes ichnogenus的大型三叉戟(三趾)足迹是由兽脚亚目恐龙制造的,但一些研究人员认为它们的制造者是基底蜥脚类恐龙。Otozoum的四趾足迹通常被解释为原蜥脚类恐龙的足迹,但一些研究人员将其归因于鸟臀目恐龙,甚至是伪苏门长龙。这些问题促使我们对两足恐龙、可能的两足恐龙和其他始祖龙的后脚比例进行了新的研究,为之前可用的数据增加了新的测量值。兽脚亚目恐龙的脚骨架与两足鸟臀目恐龙的不同之处在于,脚趾中部的指骨相对较长,指骨较窄,有蹄类动物相对较短,内脚趾相对较短(趾I,但两组中的一些成员都失去了趾I)。兽脚类与原蜥脚类的脚不同之处在于,它们的指骨略窄,有蹄类相对较短,趾I相对较短。但一些较小的基底蜥脚类在这些特征上更难与兽脚类区分开来。保留第一指的中小型鸟臀目恐龙的脚与大多数基底蜥脚类恐龙和一些假蜥脚类动物的脚非常相似。我们的研究结果表明,大多数(但可能不是全部)形态保存完好的真龙目恐龙更有可能是由兽脚亚目恐龙而非两足蜥脚类恐龙形成的。更难确定Otozoum最有可能的制造商。
{"title":"Pedal Skeletal Proportions of Bipedal and Potentially Bipedal Dinosaurs and Other Archosaurs: Interpreting the Makers of Early Mesozoic Footprints","authors":"J. Farlow, J. N. Lallensack, R. Müller, J. Hyatt","doi":"10.3374/014.063.0201","DOIUrl":"https://doi.org/10.3374/014.063.0201","url":null,"abstract":"Abstract Dinosaur footprints often occur in Late Triassic–Early Jurassic continental sedimentary rocks. While many such tracks can readily be associated with the kinds of dinosaurs that made them, the makers of some footprints have been controversial. Large tridactyl (three-toed) footprints of the ichnogenus Eubrontes are thought by most paleontologists to have been made by theropod dinosaurs, but some workers think their makers were basal sauropodomorph (“prosauropod”) dinosaurs. The four-toed footprint Otozoum is usually interpreted as a prosauropod print, but some workers instead attribute it to an ornithischian (basal thyreophoran) dinosaur or even a pseudosuchian archosaur. These issues prompted us to do a new study of the proportions of the hindfeet of bipedal and potentially bipedal dinosaurs and other archosaurs, adding new measurements to previously available data. Foot skeletons of theropod dinosaurs differ from those of bipedal ornithischian dinosaurs in having relatively longer phalanges from the middle portions of toes, narrower phalanges, relatively shorter unguals, and a relatively shorter inner toe (digit I—but some members of both groups lose digit I altogether). Theropod feet differ from feet of prosauropods in having slightly narrower phalanges, relatively shorter unguals, and a relatively shorter digit I, but some smaller basal sauropodomorphs are harder to distinguish from theropods in these features. Feet of small to medium-sized ornithischians that retain digit I are very similar to those of most basal sauropodomorphs and also some pseudosuchians. Our results suggest that most (but perhaps not all) morphologically well-preserved Eubrontes are more likely to have been made by theropods than bipedal sauropodomorphs. It is more difficult to determine the most likely maker(s) of Otozoum.","PeriodicalId":50719,"journal":{"name":"Bulletin of the Peabody Museum of Natural History","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2022-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41594033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
The Eurypterid Endostoma and Its Homology with Other Chelicerate Structures 泛翅类动物内膜瘤及其与其他螯合结构的同源性
IF 1.3 4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2022-09-30 DOI: 10.3374/014.063.0202
R. Plotnick, R. Bicknell
Abstract The endostoma of eurypterids is a small ventral structure previously known from only 11 specimens and in detail from only a single species, Eurypterus tetraganophthalmus. Four previously undescribed eurypterid specimens from the Samuel J. Ciurca Jr. Collection, Yale Peabody Museum of Natural History, likely belonging to Eurypterus, and a previously documented specimen of the pterygotid Acutiramus cummingsi in the New York State Museum, are considered here to reinterpret the morphology and homologies of the endostoma. We demonstrate that the endostoma is a bilateral, flaplike appendage, with distal margins bearing anteriorly facing setae. An anterior embayment and posterior medial notch are noted. The latter represents the point where the endostoma articulates with an oval sclerite. Here we propose that, contrary to previous interpretations, the endostoma is an appendage, likely of the seventh body segment, and is probably homologous to the xiphosuran chilaria. This has direct implications for the hypotheses of homology for the metastoma, a ventral structure common to eurypterids and chasmataspids.
摘要eurypterids的内瘘是一个小的腹侧结构,以前仅从11个标本中了解到,并且仅从单一物种Eurypterus tetraganophthalmus中详细了解。来自耶鲁皮博迪自然历史博物馆Samuel J. cirurca Jr.收藏的四个先前未被描述的欧翼龙标本,可能属于欧翼龙,以及纽约州博物馆中先前记录的翼龙Acutiramus cummingsi标本,在这里被认为是重新解释内膜瘤的形态和同源性。我们证明,内皮瘤是一个双侧,瓣状附属物,远端边缘承载前面向刚毛。可见前囊膜和后内侧切迹。后者表示内膜瘤与卵形巩膜相连的点。在这里,我们提出,与以往的解释相反,内膜瘤是一个附属物,可能是第七身体节,并可能是同源的剑蜥chilaria。这对转移瘤的同源性假设有直接的影响,转移瘤是一种腹侧结构,常见于泛蝶类和狭蛛类。
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引用次数: 0
A Review of the United States Exploring Expedition Crustacea Type Specimens in the Yale Peabody Museum of Natural History 美国在耶鲁皮博迪自然历史博物馆探索甲壳动物模式标本综述
IF 1.3 4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2022-09-30 DOI: 10.3374/014.063.0203
Daniel J. Drew
Abstract Crustacea type specimens from the United States Exploring Expedition of 1838–1842 present in the Yale Peabody Museum are reviewed and figured. These specimens are of historic and scientific value to the public and research communities. The five lots reviewed consist of a brachyuran crab, a caridean shrimp, and three lots of amphipods described by expedition member James D. Dana. Publishing on these accounts is an attempt to highlight these important specimens while complementing the publicly accessible collections data that is currently available.
摘要对耶鲁皮博迪博物馆收藏的1838–1842年美国探险队的甲壳动物模式标本进行了回顾和描绘。这些标本对公众和研究界具有历史和科学价值。考察的五批包括一只短吻蟹、一只脊虾和探险队员詹姆斯·D·达纳描述的三批片脚类动物。在这些账户上发布是为了突出这些重要标本,同时补充目前可公开获取的收藏数据。
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引用次数: 0
Tooth Implantation and Attachment in Scoloparia glyphanodon (Parareptilia: Procolophonidae) 草甘膦Scoloparia glyphanodon的牙齿植入和附着(副爬行动物:原牙形目)
IF 1.3 4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2022-04-21 DOI: 10.3374/014.063.0103
K. Jenkins, Bhart‐Anjan S. Bhullar
Abstract We describe tooth implantation, replacement, and attachment in a specimen of the procolophonid Scoloparia glyphanodon. Though an earlier description of the specimen made mention of the dentary, splenial, and coronoid, we identify a small sliver of the angular that is also present. We observe two modes of tooth implantation (protothecodonty and acrodonty) and no tooth replacement, though it is likely teeth were added posteriorly over time. Previous interpretations of tooth implantation in procolophonids were conflated with replacement patterns and mode of implantation. Additionally, the combination of dental characters of the specimen suggests Scoloparia glyphanodon had an herbivorous diet.
摘要我们描述了在一个钩吻Scoloparia glyphanodon标本中的牙齿植入、替换和附着。尽管早期对该标本的描述提到了齿状、脾状和冠状,但我们发现了一小部分也存在的棱角。我们观察到两种牙齿植入模式(原牙周和顶牙周),并且没有更换牙齿,尽管随着时间的推移,牙齿很可能是后植入的。先前对直发性息肉的牙齿植入的解释与置换模式和植入方式混为一谈。此外,该标本的牙齿特征组合表明,Scoloparia glyphanodon有草食性饮食。
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引用次数: 3
Using Mitogenomes to Explore the Social and Ecological Contexts of Crocodile Mummification in Ancient Egypt 利用线粒体基因组探索古埃及鳄鱼木乃伊化的社会和生态背景
IF 1.3 4区 哲学 Q2 Agricultural and Biological Sciences Pub Date : 2022-04-21 DOI: 10.3374/014.063.0101
E. Hekkala, R. Colten, Seth W. Cunningham, Oliver Smith, S. Ikram
Abstract We used isotopic and genomic data to explore the ecological and social context of cultural practices associated with the mummification of crocodiles in ancient Egypt. Ancient DNA was recovered from four mummified crocodile hatchlings held in the collections of the Peabody Museum of Natural History, Yale University. Previous genetic analyses of crocodile mummies have indicated that most mummies represent the newly resurrected taxon, Crocodylus suchus Geoffroy Saint-Hilaire, 1807. However, mitogenomic data for the Yale Peabody Museum mummies indicates that these specimens represent the first genomically authenticated representatives of the Nile crocodile (Crocodylus niloticus Laurenti, 1768) in museum collections. We explore these findings within the broader context of modern and historical distributions of both crocodile species and the potential implications for our understanding of funerary practices involving crocodiles in ancient Egypt.
摘要我们使用同位素和基因组数据来探索与古埃及鳄鱼木乃伊化相关的文化实践的生态和社会背景。耶鲁大学皮博迪自然历史博物馆收藏的四只鳄鱼幼崽木乃伊中发现了古代DNA。先前对鳄鱼木乃伊的基因分析表明,大多数木乃伊代表了新复活的分类单元,即鳄鱼分类单元Geoffroy Saint-Hilaire,1807年。然而,耶鲁大学皮博迪博物馆木乃伊的线粒体基因组数据表明,这些标本代表了博物馆藏品中第一批经过基因组鉴定的尼罗河鳄代表(Crocodylus niloticus Laurenti,1768)。我们在更广泛的现代和历史鳄鱼物种分布背景下探索了这些发现,并对我们理解古埃及涉及鳄鱼的葬礼习俗产生了潜在的影响。
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引用次数: 1
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Bulletin of the Peabody Museum of Natural History
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