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Exploring models of human migration to the Japanese archipelago using genome-wide genetic data 利用全基因组遗传数据探索人类向日本群岛迁移的模型
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-03-31 DOI: 10.1537/ASE.201215
N. Osada, Y. Kawai
The origins of people in the Japanese archipelago are of long-standing interest among anthropologists, archeologists, linguists, and historians studying the history of Japan. While the ‘dualstructure’ model proposed by Hanihara in 1991 has been considered the primary working hypothesis for three decades, recent advances in DNA typing and sequencing technologies provide an unprecedented amount of present-day and ancient human nuclear genome data, which enable us to refine or extend the dual-structure model. In this review, we summarize recent genome sequencing efforts of present-day and ancient people in Asia, mostly focusing on East Asia, and we discuss the possible migration routes and admixture patterns of Japanese ancestors. We also report on a meta-analysis we performed by compiling publicly available datasets to clarify the genetic relationships of present-day and ancient Japanese populations with surrounding populations. Because the ancient genetic data from the Japanese archipelago have not yet been fully analyzed, we have to corroborate models of prehistoric human movement using not only new genetic data but also linguistic and archeological data to reconstruct a more comprehensive history of the Japanese people.
人类学家、考古学家、语言学家和研究日本历史的历史学家长期以来都对日本列岛人的起源感兴趣。虽然Hanihara在1991年提出的“双结构”模型三十年来一直被认为是主要的工作假设,但DNA分型和测序技术的最新进展提供了前所未有的当今和古代人类核基因组数据,使我们能够完善或扩展双结构模型。在这篇综述中,我们总结了亚洲现代人和古代人最近的基因组测序工作,主要集中在东亚,并讨论了日本祖先可能的迁徙路线和混合模式。我们还报告了一项荟萃分析,我们通过汇编公开的数据集来阐明当今和古代日本人口与周围人口的遗传关系。由于日本列岛的古代基因数据尚未得到充分分析,我们必须不仅使用新的基因数据,还使用语言和考古数据来证实史前人类运动的模型,以重建更全面的日本人民历史。
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引用次数: 7
Modern human DNA analyses with special reference to the inner dual-structure model of Yaponesian 现代人类DNA分析——特别是雅波内二元结构模型
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-03-31 DOI: 10.1537/ASE.201217
T. Jinam, Y. Kawai, N. Saitou
Previous studies suggested two major migration events during the Jomon and Yayoi periods that affected the genetic diversity of modern Japanese (Yaponesians). We explored the possibility of a three-wave migration model by examining three datasets of modern human DNA: (1) whole mitochondrial (mt) DNA genomes of 1642 Yaponesians; (2) mtDNA haplogroup frequencies of 59105 Yaponesians from 47 prefectures; and (3) genome-wide SNP data of two Yaponesians (Ainu, Okinawa) and whole-genome sequence data of Yamato individuals, the Funadomari Jomon F23 individual, and three East Asian populations (Korean, northern Chinese, and southern Chinese). Past population size change was estimated based on dataset 1, and we clearly observed a steep population increase after the Yayoi period. Principal-component analysis and phylogenetic network analysis were applied to dataset 2, and we confirmed the pattern consistent with our model. An admixture program was used on dataset 3, and we found that the two- and three-layer migration models are both compatible with these SNP data. Taken together, these three datasets provide support for our three-wave, ‘inner dual-structure’ model.
先前的研究表明,绳文和弥生时期发生了两次主要的迁徙事件,影响了现代日本人的遗传多样性。我们通过检查现代人类DNA的三个数据集来探索三波迁移模型的可能性:(1)1642名亚波人的全线粒体(mt)DNA基因组;(2) 来自47个都道府县的59105名雅坡那人mtDNA单倍群频率;和(3)两个亚波人(阿伊努人、冲绳人)的全基因组SNP数据和大和人、伏那多麻绳文F23人和三个东亚群体(朝鲜人、中国北方人和中国南方人)的整个基因组序列数据。过去的人口规模变化是根据数据集1估计的,我们清楚地观察到弥生时期后人口急剧增加。将主成分分析和系统发育网络分析应用于数据集2,我们证实了该模式与我们的模型一致。在数据集3上使用了一个混合程序,我们发现两层和三层迁移模型都与这些SNP数据兼容。总之,这三个数据集为我们的三波“内部双重结构”模型提供了支持。
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引用次数: 7
The time-dependent evolutionary rate of mitochondrial DNA in small mammals inferred from biogeographic calibration points with reference to the late Quaternary environmental changes in the Japanese archipelago 参考日本列岛晚第四纪环境变化的生物地理校准点推断的小型哺乳动物线粒体DNA的时间依赖进化速率
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-03-31 DOI: 10.1537/ASE.201201
Hitoshi Suzuki
Mitochondrial DNA (mtDNA) sequences have long been the most popular marker for assessing phylogenetic relationships and uncovering population dynamics. However, the mechanism of the nucleotide substitution rate of mtDNA remains unclear. While the evolutionary rate over tens of thousands of years is thought to be time dependent, the overall picture is not fully understood. This article presents recent achievements related to the time-dependent evolutionary rate of mtDNA in small rodents in the Japanese archipelago. The method focuses on rapid expansion events during the late Quaternary, during which there was a prolonged severe cold period and repeated abrupt warm periods, providing multiple calibration points. The global sea level fluctuation and migration to islands help to specify the calibration points. For calibration points at 11000, 15000, 53000, and 130000 years ago, the evolutionary rates were approximately 0.11, 0.11, 0.047, and 0.029 substitutions/site/million years, respectively, in the mitochondrial cytochrome b gene (Cytb). Applying the higher rate to assess the evolutionary history of the commensal house mouse (Mus musculus) and complete mitochondrial genome sequences (~16000 bp) allowed us to trace prehistoric human culture development based on millet and rice agriculture. The pattern of time-dependent evolutionary rates presented here is likely applicable to other small rodents. The Japanese archipelago is ideal for assessing evolutionary rates with biogeographic calibration points in the late Quaternary in species with multiple genetically distinct local populations.
线粒体DNA(mtDNA)序列长期以来一直是评估系统发育关系和揭示种群动态的最受欢迎的标记。然而,mtDNA核苷酸取代率的机制尚不清楚。虽然数万年的进化率被认为是时间依赖性的,但总体情况还不完全清楚。本文介绍了日本群岛小型啮齿动物线粒体DNA时间依赖性进化率的最新研究成果。该方法侧重于第四纪晚期的快速膨胀事件,在这期间有一个延长的严寒期和重复的突然温暖期,提供了多个校准点。全球海平面的波动和向岛屿的迁移有助于指定校准点。对于11000、15000、53000和130000年前的校准点,线粒体细胞色素b基因(Cytb)的进化率分别约为0.11、0.11、0.047和0.029个取代/位点/百万年。将较高的比率应用于评估共生家鼠(Mus musculus)的进化史和完整的线粒体基因组序列(约16000 bp),使我们能够追踪以小米和水稻农业为基础的史前人类文化发展。这里提出的与时间相关的进化率模式可能适用于其他小型啮齿动物。日本群岛是评估第四纪晚期具有多个遗传上不同的当地种群的物种的生物地理学校准点的进化率的理想选择。
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引用次数: 4
Geographical distribution of certain toponyms in the Samguk Sagi Samguk Sagi某些地名的地理分布
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-03-31 DOI: 10.1537/ASE.201229
M. Endo
Kim Busik’s Samguk Sagi 三国史記 , History of the Three Kingdoms , dating from 1145 A.D., is renowned for including Japanese toponyms in the Korean peninsula and the north of Yalujiang district (modern Liaoning and Jilin Provinces). Kim’s work recorded the older, archaic toponyms before they were converted into sinicized (i.e. expressed with Chinese words) place names with two Chinese characters in 757 A.D. by the order of King Kyeongdeok. This paper maps specific words included in the place names of 783 locations for which the corresponding present places are evident. The following were words examined: (1) ‘river’ and its related words; (2) ‘valley’; (3) ‘mountain’ and ‘ridge’; and (4) ‘city’ and ‘burg’. Japonic-sourced toponyms are typically distributed in the central and northern areas of the Yalu River, primarily in the district of Koguryŏ; however, they go beyond these regions. The use of Chi nese loanwords is noted in the southern area, where determining which language was spoken is difficult. In a town near Seoul, the stem of the toponym belongs to the Korean language, whereas the unit word belongs to the Japonic language. This usage may be attributed to bilingualism, whereby Korean-speaking inhabitants used their own language for the stem of the place name. Mongolic and/or Tungusic loanwords are also found. In some cases, determining the language origin of the current toponyms is difficult. Therefore, the minute geographical distribution of the origin languages is displayed word by word. These toponyms reflect the traces of indigenous languages and reveal that Japonic-speaking people still dwelled in the central area of the peninsula and in the northern area of the Yalu River at that period.
金的三段式三国史記 , 《三国史》始于公元1145年,以收录朝鲜半岛和鸭绿江地区(今辽宁省和吉林省)北部的日本地名而闻名。金的作品记录了在公元757年庆德国王下令将这些古老的地名转换为带有两个汉字的中文地名(即用中文单词表达)之前的地名。本文绘制了783个地点的地名中包含的特定单词,其中相应的当前地点是明显的。以下是被检查的单词:(1)“河”及其相关单词;(2) “山谷”;(3) “山”和“脊”;以及(4)“城市”和“堡”。日语来源的地名通常分布在鸭绿江中部和北部地区,主要分布在高句丽区;然而,它们超越了这些区域。在南部地区,汉语借词的使用很常见,在那里很难确定使用哪种语言。在首尔附近的一个城镇,地名的词干属于韩语,而单位词属于日语。这种用法可能归因于双语,讲韩语的居民使用自己的语言作为地名的词干。蒙古语和/或通古斯语借词也有发现。在某些情况下,很难确定当前地名的语言来源。因此,原始语言的微小地理分布是逐字显示的。这些地名反映了土著语言的痕迹,揭示了那个时期讲日语的人仍然居住在半岛中部和鸭绿江北部地区。
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引用次数: 3
Preface to the special issue on the Yaponesia Genome Project 雅本西亚基因组计划特刊前言
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-03-31 DOI: 10.1537/ASE.210114
N. Saitou
© 2021 The Anthropological Society of Nippon We started the five-year ‘Yaponesia Genome Project’ in 2018. This project is one of those funded by a MEXT Grantin-Aid for Scientific Research on Innovative Areas. The project home page is at http://www.yaponesian.jp/index_e. php. I am leader of this project. Please also see the introduction of this project reported by the Yaponesian Genome Project Managing Group (2020) in the new journal iDarwin. There are six research groups in this project as follows (* indicates the principal investigator of each group). Group A01—study modern human genomes. Members: Naruya Saitou*, Ituro Inoue, Koichiro Yoshiura, Timothy A. Jinam, and Masatoshi Matsunami. Group A02—study ancient human genomes. Members: Ken-ichi Shinoda*, Noboru Adachi, Tsuneo Kakuda, Takehiro Sato, and Hideaki Kanzawa-Kiriyama. Group A03—study animal and plant genomes. Members: Hitoshi Suzuki*, Ryuichi Masuda, Takeshi Itoh, and Toshinori Endo. Group B01—study archeological data. Members: Shin’ichiro Fujio*, Naoko Kinoshita, Akira Seike, Yasuhiro Yamada, and Tatsuhiko Hamada. Group B02—study linguistic data. Members: Mitsuaki Endo, Nobuko Kibe, Shigehisa Karimata, Hiroshi Nakagawa, and Shinjiro Kazama. Group B03—study new genome data. Members: Naoki Osada*, Yosuke Kawai, Akihiko Fujimoto, and Jun Gojobori. There are also two-year limited research groups A04 and B04 as follows. Group A04 members: Kosuke Hanada, Kazuyoshi Hosomichi, Tadashi Imanishi, Ryosuke Kimura, Ken Naito, Kazuhiro Nakayama, Jun Ohashi, Hiroki Oota, Yoichi Sato, Kazuhiro Satomura, and Yohey Terai. Group B04 members: Reiko Aso, Kyoko Funahashi, Yuka Hayashi, Masakado Kawata, Takumi Nishiuchi, and Masami Takenaka. Professor Hiroki Oota of The University of Tokyo, who is a member of Group A04, is also editor-in-chief of Anthropological Science. He kindly offered to publish a special issue of Anthropological Science on the Yaponesia Genome Project. I thus asked the principal investigators of the six research groups to contribute either a review or an original investigation of their research area to Anthropological Science. Group B01 declined to contribute an article; however, Professor Oota himself contributed one review article to this issue. Thus, there are six articles, four original investigations and two reviews, in this special issue as follows. Two review articles were contributed by Group B03 (Osada and Kawai) and by Group A04 (Koganebuchi and Oota). Osada and Kawai (2021) reviewed usage of genomewide SNP data for estimating human migrations to Yaponesia. Koganebuchi and Oota (2021) reviewed human paleogenomic studies in East Asia including Yaponesia. Although it is a review article, Osada and Kawai (2021) found a weak but significant genetic tie of Jomon people to ancient North Siberians through meta-analysis of publicly available datasets. Four original articles were contributed by Groups A01 and B03 (Jinam, Kawai, and Saitou), Group A02 (Adachi, Kanzawa-Kiriyama, Nara, Kak
©2021日本人类学学会我们于2018年启动了为期五年的“雅本西亚基因组计划”。本项目为“创新领域科学研究资助计划”资助项目之一。该项目的主页在http://www.yaponesian.jp/index_e。php。我是这个项目的负责人。请参见雅本尼西亚基因组计划管理小组(2020)在新杂志《达尔文》上报道的该项目的介绍。本项目共设6个课题组,具体如下(*表示每个课题组的负责人)。a01组——研究现代人类基因组。成员:齐藤鸣也*、井上伊图郎、吉浦光一郎、提摩太A.吉南、松上正敏。a02组研究古代人类基因组。成员:筱田健一*、安达信郎、角田恒雄、佐藤武宏、金泽秀明。a03组-研究动物和植物基因组。成员:铃木仁*、增田龙一、伊藤武、远藤俊典。小组b01 -研究考古资料。成员:藤尾信一郎*、木下直子、成池明、山田康弘、滨田达彦。小组b02 -研究语言资料。成员:远藤三明、木部信子、Karimata重久、中川宏、Kazama慎次郎。小组b03研究新的基因组数据。成员:大田直树*、川合洋介、藤本明彦、Gojobori君。另外还有为期两年的有限研究小组A04和B04如下。A04组成员:花田光介、细道和吉、今西正、木村良介、内藤健、中山和宏、大桥俊、大田博树、佐藤洋一、中村和宏、寺井洋一。B04组成员:麻生玲子、船桥京子、林由香、川田雅昌、西内拓美、竹中雅美。A04小组成员、东京大学教授大田弘树兼任《人类学》总编辑。他好心地提出要出版一期《人类学科学》关于雅本西亚基因组计划的特刊。因此,我请这六个研究小组的主要研究人员向《人类学科学》提交一份关于其研究领域的综述或原创性调查报告。B01组拒绝发表文章;然而,Oota教授自己为这个问题贡献了一篇评论文章。因此,本期特刊共有六篇文章,四篇原创调查,两篇综述,内容如下。两篇综述文章由B03组(Osada和Kawai)和A04组(Koganebuchi和Oota)贡献。Osada和Kawai(2021)回顾了全基因组SNP数据用于估计人类向雅彭西亚迁移的使用情况。Koganebuchi和Oota(2021)回顾了包括雅本西亚在内的东亚地区的人类古基因组研究。虽然这是一篇综述文章,但Osada和Kawai(2021)通过对公开数据集的荟萃分析,发现绳纹人和古代北西伯利亚人之间存在微弱但重要的遗传联系。四篇原创文章由A01组和B03组(Jinam、Kawai和saiitou)、A02组(Adachi、Kanzawa-Kiriyama、Nara、Kakuda、Nishida和Shinoda)、A03组(Suzuki)和B02组(Endo)贡献。Jinam et al. (2021b)分析了3个现代雅本西亚基因组数据集,结果表明,Saitou(2015、2017)、Saitou和Jinam(2017)以及Jinam et al. (2021a)提出并讨论的雅本西亚“内部二元结构”模型与这些数据集兼容。Adachi et al.(2021)报道了来自九州Higashimyo贝壳堆遗址的第一个绳纹基因组数据,该数据可追溯到约8000年前。他们的主成分分析表明,Kanzawa-Kiriyama等人(2019)报告的北海道绳纹人基因组与Adachi等人(2021)报告的九州绳纹人基因组非常相似,表明绳纹人在很长一段时间内具有惊人的同质性。Suzuki(2021)研究了啮齿动物线粒体DNA (mtDNA)的替代率,并表明这些进化率存在时间依赖性。基于这一发现,并使用Li等人(2020)报道的mtDNA数据,他认为有两波小鼠迁移到雅波onesia:一波是3500 - 3000年前的M. M. castaneus亚种,另一波是2700年前的M. M. musus亚种。这两次迁徙与Saitou(2017)提出的人类第二次和第三次迁徙到雅本西亚非常吻合。远藤(2021)从Busik等人(1145)的朝鲜半岛南部三国历史文献中考察了四种地名。他的结论是,直到公元7世纪的三国时期,讲日语的人仍然居住在半岛中部和鸭绿江北部地区。我希望这六篇文章对研究雅本人的起源和发展有帮助。人类学Vol. 29(1), 1 - 2, 2021
{"title":"Preface to the special issue on the Yaponesia Genome Project","authors":"N. Saitou","doi":"10.1537/ASE.210114","DOIUrl":"https://doi.org/10.1537/ASE.210114","url":null,"abstract":"© 2021 The Anthropological Society of Nippon We started the five-year ‘Yaponesia Genome Project’ in 2018. This project is one of those funded by a MEXT Grantin-Aid for Scientific Research on Innovative Areas. The project home page is at http://www.yaponesian.jp/index_e. php. I am leader of this project. Please also see the introduction of this project reported by the Yaponesian Genome Project Managing Group (2020) in the new journal iDarwin. There are six research groups in this project as follows (* indicates the principal investigator of each group). Group A01—study modern human genomes. Members: Naruya Saitou*, Ituro Inoue, Koichiro Yoshiura, Timothy A. Jinam, and Masatoshi Matsunami. Group A02—study ancient human genomes. Members: Ken-ichi Shinoda*, Noboru Adachi, Tsuneo Kakuda, Takehiro Sato, and Hideaki Kanzawa-Kiriyama. Group A03—study animal and plant genomes. Members: Hitoshi Suzuki*, Ryuichi Masuda, Takeshi Itoh, and Toshinori Endo. Group B01—study archeological data. Members: Shin’ichiro Fujio*, Naoko Kinoshita, Akira Seike, Yasuhiro Yamada, and Tatsuhiko Hamada. Group B02—study linguistic data. Members: Mitsuaki Endo, Nobuko Kibe, Shigehisa Karimata, Hiroshi Nakagawa, and Shinjiro Kazama. Group B03—study new genome data. Members: Naoki Osada*, Yosuke Kawai, Akihiko Fujimoto, and Jun Gojobori. There are also two-year limited research groups A04 and B04 as follows. Group A04 members: Kosuke Hanada, Kazuyoshi Hosomichi, Tadashi Imanishi, Ryosuke Kimura, Ken Naito, Kazuhiro Nakayama, Jun Ohashi, Hiroki Oota, Yoichi Sato, Kazuhiro Satomura, and Yohey Terai. Group B04 members: Reiko Aso, Kyoko Funahashi, Yuka Hayashi, Masakado Kawata, Takumi Nishiuchi, and Masami Takenaka. Professor Hiroki Oota of The University of Tokyo, who is a member of Group A04, is also editor-in-chief of Anthropological Science. He kindly offered to publish a special issue of Anthropological Science on the Yaponesia Genome Project. I thus asked the principal investigators of the six research groups to contribute either a review or an original investigation of their research area to Anthropological Science. Group B01 declined to contribute an article; however, Professor Oota himself contributed one review article to this issue. Thus, there are six articles, four original investigations and two reviews, in this special issue as follows. Two review articles were contributed by Group B03 (Osada and Kawai) and by Group A04 (Koganebuchi and Oota). Osada and Kawai (2021) reviewed usage of genomewide SNP data for estimating human migrations to Yaponesia. Koganebuchi and Oota (2021) reviewed human paleogenomic studies in East Asia including Yaponesia. Although it is a review article, Osada and Kawai (2021) found a weak but significant genetic tie of Jomon people to ancient North Siberians through meta-analysis of publicly available datasets. Four original articles were contributed by Groups A01 and B03 (Jinam, Kawai, and Saitou), Group A02 (Adachi, Kanzawa-Kiriyama, Nara, Kak","PeriodicalId":50751,"journal":{"name":"Anthropological Science","volume":" ","pages":""},"PeriodicalIF":0.7,"publicationDate":"2021-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45544154","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"社会学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Paleogenomics of human remains in East Asia and Yaponesia focusing on current advances and future directions 东亚和雅本西亚地区人类遗骸古基因组学研究进展及未来发展方向
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-03-31 DOI: 10.1537/ASE.2011302
Kae Koganebuchi, Hiroki Oota
Ancient DNA analysis became paleogenomics once high-throughput sequencing technology was applied to ancient DNA sequencing. Paleogenomics based on whole-genome information from Neanderthals and Denisovans showed that small fragments of these genomes remain in the modern human genome, and corresponding studies of anatomical modern humans clarified the history of migration and expansion among Homo sapiens. Due to geographical and environmental conditions, paleogenomic studies have fallen behind in Eastern compared with Western Eurasia. Recently, however, various capture sequencing techniques, which can enrich ancient DNA, have been used in East Eurasia, and the field of paleogenomics has been further developed. This review briefly introduces the history of ancient DNA analysis leading to paleogenomics, outlines three sequencing stages (partial, draft, and complete genome sequencing) and capture methods, and discusses the necessity of high-quality sequencing for paleogenomes of Eastern Eurasia.
一旦高通量测序技术应用于古DNA测序,古DNA分析就成为古基因组学。基于尼安德特人和丹尼索瓦人全基因组信息的古基因组学研究表明,这些基因组的小片段仍然存在于现代人类基因组中,而对现代人类的解剖研究则阐明了智人之间的迁移和扩张历史。由于地理和环境条件的限制,欧亚大陆东部的古基因组学研究相对落后于西部。近年来,各种捕获测序技术在东欧亚大陆的应用,使古基因组学领域得到了进一步的发展。本文简要介绍了古基因组学的历史,概述了古基因组测序的三个阶段(部分、草图和完整基因组测序)和捕获方法,并讨论了对欧亚东部古基因组进行高质量测序的必要性。
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引用次数: 2
New hominoid mandible from the early Late Miocene Irrawaddy Formation in Tebingan area, central Myanmar 缅甸中部德宾甘地区晚中新世早期伊洛瓦底江组新类人猿下颌骨
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-02-27 DOI: 10.1537/ASE.2012131
M. Takai, K. Nyo, Reiko T. Kono, Thaung Htike, Nao Kusuhashi, Z. Thein
A new medium-sized hominoid mandibular fossil was discovered at an early Late Miocene site, Tebingan area, south of Magway city, central Myanmar. The specimen is a left adult mandibular corpus preserving strongly worn M 2 and M 3 , fragmentary roots of P 4 and M 1 , alveoli of canine and P 3 , and the lower half of the mandibular symphysis. In Southeast Asia, two Late Miocene medium-sized hominoids have been discovered so far: Lufengpithecus from the Yunnan Province, southern China, and Khoratpithecus from northern Thailand and central Myanmar. In particular, the mandibular specimen of Khoratpithecus was discovered from the neighboring village of Tebingan. However, the new mandible shows apparent differences from both genera in the shape of the outline of the mandibular symphyseal section. The new Tebingan mandible has a well-developed superior transverse torus, a deep intertoral sulcus (= genioglossal fossa), and a thin, shelf-like inferior transverse torus. In contrast, Lufengpithecus and Khoratpithecus each have very shallow intertoral sulcus and a thick, rounded inferior transverse torus. The characteristic morphology of the mandibular symphysis in the Tebingan specimen suggests a different taxon from Khoratpithecus . In central Myanmar at least two kinds of medium-sized hominoids were likely present in the early Late Miocene.
在缅甸中部马格威市南部泰宾甘地区晚中新世早期遗址发现了一具新的中等大小的类人猿下颌骨化石。该标本为左侧成人下颌骨,保留了强烈磨损的m2和m3, p1和m1的碎片根,犬齿和p3的牙泡,以及下颌骨联合的下半部分。在东南亚,迄今为止已经发现了两种晚中新世的中型人科动物:来自中国南部云南省的陆丰猿人(Lufengpithecus)和来自泰国北部和缅甸中部的Khoratpithecus。特别是,霍拉特古猿的下颌标本是在邻近的Tebingan村发现的。然而,新的下颌骨在下颌骨联合节的轮廓形状上与这两个属有明显的不同。新的Tebingan下颌骨具有发育良好的上横环,深间沟(=颏舌窝)和薄的架子状下横环。相比之下,Lufengpithecus和Khoratpithecus都有很浅的间沟和一个厚的,圆形的下横环。Tebingan标本下颌联合的特征形态表明其与Khoratpithecus属于不同的分类群。在缅甸中部,至少有两种中等大小的人科动物可能出现在晚中新世早期。
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引用次数: 2
Assessment of intra- and inter-assay variation in dried blood spot telomere length measurements by qPCR 用qPCR方法测定干血斑端粒长度的测定内和测定间差异的评估
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-02-13 DOI: 10.1537/ASE.2011301
Yuki Mizuno, K. Hur, M. Umezaki
Telomere length has recently gained popularity as a biomarker of aging-related diseases. Dried blood spot (DBS) samples are commonly used to measure telomere length for human biology research, but studies assessing intraand inter-assay variations are scarce. The objective of the present study was to analyze and elucidate the extent of intraand inter-assay variation of DBS telomere length measurement. The DBS telomere length of a male subject was determined by quantitative polymerase chain reaction (qPCR) using four different protocols with two different container types (96-well plates and 8-well tubes) and two different primer sets (tel1b–tel2b and tel1–tel2). The measurement of telomere length with 8-well tubes and the tel1–tel2 primer set demonstrated the lowest intra-assay coefficient of variation (CV) (6.0%) and gave an inter-assay CV of 5.0%. The protocol for 96-well plates typically resulted in high intra-assay CVs (>27%). Assessment of intra-assay variation is essential when DBS telomere length is measured by qPCR.
端粒长度作为一种与衰老有关的疾病的生物标志物近年来越来越受欢迎。干血斑(DBS)样本通常用于测量人类生物学研究的端粒长度,但评估检测内和检测间变化的研究很少。本研究的目的是分析和阐明DBS端粒长度测量的内部和内部变化的程度。采用定量聚合酶链式反应(qPCR)测定男性受试者DBS端粒长度,采用四种不同的方法,两种不同的容器类型(96孔板和8孔管)和两种不同的引物组合(tel1b-tel2b和tel1-tel2)。用8孔管和tel1-tel2引物组测定端粒长度时,组内变异系数(CV)最低,为6.0%,组间变异系数为5.0%。96孔板的方案通常导致较高的测定内CVs(>27%)。当用qPCR测量DBS端粒长度时,评估测定内变异是必不可少的。
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引用次数: 1
Pediatric mandibular osteomyelitis: a probable case from Okhotsk period (5th–13th century AD) northern Japan 小儿下颌骨髓炎:日本北部鄂霍次克时期(公元5 - 13世纪)一例可能病例
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-01-01 DOI: 10.1537/ase.2108281
A. Lieverse, Daisuke Kubo, R. Bourgeois, H. Matsumura, M. Yoneda, H. Ishida
This paper discusses a probable case of pediatric mandibular osteomyelitis (OM) from the east Hokkaido Okhotsk (5th–13th century AD) site of Moyoro, Japan. The remains of a young child present an unusual mandibular lesion exhibiting two main features: (1) cortical thickening reflecting periosteal new bone formation, and (2) lytic alveolar destruction with associated antemortem tooth loss. The lesion was examined macroscopically, microscopically, and via computed tomography imaging. A differential diagnosis—considering lesion appearance, location, and the age of the child—is most consistent with OM, while alveolar and dental involvement suggest an odontogenic source such as an infected tooth germ. The infection appears to have been active at the time of death and chronic (i.e. of 4+ weeks) in duration, an interpretation supported by enamel hypoplastic evidence of physiological stress in the preceding 12–18 months. The lesion’s unique appearance highlights the diverse manifestation of OM, especially in the jaws and in the absence of modern therapeutic treatment. Despite being considered a relatively common condition among non-adult individuals in the past, surprisingly few cases of pediatric OM have been reported from archaeological contexts. This case, only the second documented on a mandible, contributes to the general paucity of paleopathological literature on OM.
本文讨论了一例可能的小儿下颌骨髓炎(OM)病例,该病例来自日本北海道鄂霍次克东部(公元5 - 13世纪)的莫约罗遗址。一个小孩的下颌骨病变表现出两个主要特征:(1)皮层增厚,反映骨膜新生骨的形成;(2)溶解性牙槽破坏,伴有死前牙齿脱落。对病变进行了宏观、微观和计算机断层成像检查。鉴别诊断-考虑病变的外观,位置和儿童的年龄-与OM最一致,而牙槽和牙齿累及提示牙源性来源,如感染的牙胚。感染在死亡时似乎是活跃的,持续时间为慢性(即4周以上),这一解释得到了之前12-18个月生理应激的牙釉质发育不良证据的支持。病变独特的外观突出了OM的多种表现,特别是在颌骨和缺乏现代治疗方法的情况下。尽管过去在非成人个体中被认为是一种相对常见的疾病,但令人惊讶的是,从考古背景中报道的儿科OM病例很少。这个病例,仅仅是第二个记录在下颌骨上的病例,导致了关于OM的古病理学文献的普遍缺乏。
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引用次数: 1
Complexities of regional and interregional interactions during the Formative Period in northern Peru: new perspectives from Ingatambo, Huancabamba Valley 秘鲁北部形成时期区域和区域间相互作用的复杂性:来自万卡班巴河谷因加坦博的新视角
IF 0.7 4区 社会学 Q3 EVOLUTIONARY BIOLOGY Pub Date : 2021-01-01 DOI: 10.1537/ase.210409
Atsushi Yamamoto
This article describes the changing regional and interregional entanglements in northern Peru during the Middle and Late Formative Periods from a diachronic perspective. Comparing the available archaeological data from major or ‘core’ ceremonial centers such as Kuntur Wasi and Pacopampa, and the contemporaneous center at Ingatambo, located in the northern ‘frontier,’ it seems reasonable to divide the diachronic process of interactions in northern Peru into three distinct phases to better understand its complexities. From this perspective, northern Peru around 1200 BC can be considered as an aggregate of local spheres (at the level of a valley or basin), with each of the local spheres pertaining to the emerging ceremonial centers. However, a major change seems to have occurred around 1000 BC, as regional and interregional interaction became more active in the northern highlands, and regional spheres seem to have expanded in number and geographic scale. Ceremonial centers such as Kuntur Wasi and Pacopampa formed regional-scale spheres beyond a geographically specific area. Around 800 BC, radical socioeconomic changes occurred in the Central Andes, and northern Peru was integrated into a pan-regional network covering the whole of the Central Andes, which overlay the northern interaction spheres developed by important centers such as Kuntur Wasi and Pacopampa. In this context, it seems important to focus on the site of Ingatambo, which is located at a unique geopolitical point where multiple spheres overlap and interact with the two core centers of Kuntur Wasi and Pacopampa simultaneously. Ingatambo formed and maintained its own regional sphere independent of these two centers through its connection with the far north coast and tropical lowlands.
本文从历时的角度描述了中后期形成期秘鲁北部地区和地区间纠缠的变化。比较来自Kuntur Wasi和Pacopampa等主要或“核心”仪式中心的现有考古数据,以及位于北部“边境”的Ingatambo中心,将秘鲁北部互动的历时过程分为三个不同的阶段,以更好地理解其复杂性似乎是合理的。从这个角度来看,公元前1200年左右的秘鲁北部可以被认为是当地球体的集合(在山谷或盆地的水平上),每个地方球体都与新兴的仪式中心有关。然而,一个重大的变化似乎发生在公元前1000年左右,区域和区域间的相互作用在北部高地变得更加活跃,区域范围似乎在数量和地理规模上都有所扩大。像昆图尔瓦西和帕科帕这样的仪式中心形成了超越地理特定区域的区域尺度的球体。公元前800年左右,安第斯山脉中部发生了剧烈的社会经济变化,秘鲁北部被整合到一个覆盖整个安第斯山脉中部的泛区域网络中,覆盖了由昆图尔瓦西和帕科帕等重要中心开发的北部互动领域。在这种背景下,关注Ingatambo遗址似乎很重要,它位于一个独特的地缘政治点,多个领域同时与Kuntur Wasi和Pacopampa两个核心中心重叠和互动。因加坦博通过与远北海岸和热带低地的联系,形成并维持了自己独立于这两个中心的区域范围。
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引用次数: 0
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Anthropological Science
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