Animal最新文献

{"title":"Friend or foe: effects of social experience and genetic line on responses of young gilts in a social challenge paired interaction test","authors":"","doi":"10.1016/j.animal.2024.101349","DOIUrl":"10.1016/j.animal.2024.101349","url":null,"abstract":"<div><div>The increased focus on group housing of sows in commercial pig production emphasises the importance of saving appropriate gilts which later become sows that are well-adapted to group housing systems. This study aimed to assess the short-term effects of social mixing experience and genetic line on social and exploration responses of young gilts in standardised 3-min social challenge paired interaction tests. The study included 96 gilts, from 26 litters, of two different genetic lines (Swedish Yorkshire and Dutch Yorkshire). These lines were chosen because the dam lines have been selected in group-housed and individual stall systems, respectively, a background which was hypothesised to have modified their social behaviour over time. The gilts were subjected to different early (opportunity to co-mingle with piglets in the neighbouring farrowing pen vs. no opportunity to co-mingle) and late (mixed with unfamiliar piglets at weaning vs. kept with familiar littermates after weaning) social mixing treatments, to test whether the enhanced social experience was beneficial in a socially challenging situation. Paired interaction tests were conducted at 5 and 20 weeks of age, and social and exploration behaviour of the gilts was recorded and analysed. The results showed that Swedish Yorkshire gilts explored the pen fittings more than Dutch Yorkshire gilts during the 5-week test, whereas Dutch Yorkshire gilts explored the pen fittings more than Swedish Yorkshire gilts during the 20-week test. No differences in play behaviour were found during the 5-week test, but in the 20-week test, gilts with early social mixing experience in their farrowing pen showed more locomotor play behaviour than gilts without this experience. Overall, these results suggest that genetic line and early social mixing experience can influence the social and exploration behaviours of young gilts in paired interaction tests. There was no support for the hypothesis that genetic selection in different housing systems has altered social behaviour, but it may have affected the level of exploration behaviour. There was little support for our prediction that early social experience has beneficial effects in a socially challenging situation.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142568332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Development and validation of a model for early prediction of residual feed intake in beef cattle using plasma biomarkers","authors":"","doi":"10.1016/j.animal.2024.101354","DOIUrl":"10.1016/j.animal.2024.101354","url":null,"abstract":"<div><div>Identification of plasma biomarkers for feed efficiency in growing beef cattle offers a promising opportunity for developing prediction models to improve precision feeding strategies. However, these models must accurately predict feed efficiency at early stages of fattening. Our study aimed to evaluate the reliability of candidate biomarkers previously identified in late-fattening cattle when analysed during early fattening stages and to develop diet-specific prediction equations for residual feed intake (<strong>RFI</strong>). From a total of 364 Charolais bulls across seven cohorts, we selected 64 animals with extreme RFI values. The animals were fed either a corn‑ or grass-silage diets. These animals were chosen from four out of the available seven cohorts. Animals from three cohorts (24 high-RFI and 24 low-RFI, having a mean RFI difference of 1.48 kg/d) were used for biomarker confirmation and prediction model training. Animals from a fourth cohort (8 high-RFI and 8 low-RFI, having a mean RFI difference of 0.98 kg/d) were used for model external validation. Blood samples were collected at the beginning of the feed efficiency test (333 ± 20 days), and plasma underwent targeted metabolomic for 630 metabolites, natural abundance of ¹⁵N (δ¹⁵N), insulin, and IGF-1 analysis. Seven previously identified plasma biomarkers for RFI in late-fattening beef cattle still kept their capability for discriminating low and high RFI animals when analysed during early fattening stages (<em>P</em> &lt; 0.05). Among these confirmed biomarkers, five were common for both grass- and corn-fed animals (creatinine, β-alanine, triglyceride TG18:0_34:2, symmetric dimethyl-arginine and phosphatidylcholine PC aa C30:2) while two were diet-specific (IGF-1 for grass silage-based diet, and isoleucine for corn silage-based diet. No new plasma biomarkers of RFI were identified at early-fattening stages (false discovery rate  &gt; 0.05). Prediction models were developed based on seven confirmed RFI biomarkers analysed during early-fattening. Two logistic regression models incorporating creatinine and either IGF-1 (for grass silage-based diet) or PC aa C30:2 (for corn silage-based diet) effectively distinguished between high− and low-RFI animals with high sensitivity and specificity (area under the curve &gt; 0.80). The biomarkers used in the models showed moderate to high repeatability between early and late fattening stages (0.45 &lt; r &lt; 0.65). The models were successfully externally validated, with more than 85% of animals from the fourth cohort correctly classified. Once validated in larger cohorts and utilising cost-effective and rapid analytical methods, these models could support precision feeding and breeding programmes, aiming to reduce the cost of raising beef cattle.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142577990","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Effects of oxygen levels and temperature on growth and physiology of pikeperch juveniles cultured in a recirculating aquaculture system","authors":"","doi":"10.1016/j.animal.2024.101347","DOIUrl":"10.1016/j.animal.2024.101347","url":null,"abstract":"<div><div>This study aimed to understand how environmental factors, specifically water temperature and oxygen saturation, affect the growth performance and physiology of pikeperch (<em>Sander lucioperca</em>) juveniles in recirculating aquaculture systems (<strong>RASs</strong>). Given the importance of optimising growth conditions in aquaculture to maximise efficiency, it aims to assess whether different combinations of oxygen levels and temperatures can enhance growth while maintaining the physiological health and welfare of the fish. The experimental design included the culturing pikeperch juveniles (22.7 ± 7.1 g) were exposed to hypoxia (78 ± 14%), normoxia (105 ± 12%), and hyperoxia (140 ± 18%) conditions for 72 days. This was conducted at two temperatures, 20 °C and 23 °C, each in a separate but identical RAS. The level of oxygen supply was controlled with micro bubble diffusers on the bottom of each tank. The hyperoxia at 23 °C positively affected total length, BW, specific growth rate, feed intake and feed conservation rate (<strong>FCR</strong>). The slowest growth and feed intake, along with the highest FCR, were observed in hypoxia at 20 °C. Fish reared under 23 °C exhibited significantly higher visceral-somatic index (3.54 ± 0.83 at 23 °C and 2.76 ± 0.73 at 20 °C) regardless of oxygen levels. It was primarily responsible for the observed growth difference (Final BW: 58.3 ± 18.8 g at 23 °C and 53.0 ± 18.3 g at 20 °C). The water temperature also affected haematocrit, haemoglobin, leucocyte count, mean corpuscular haemoglobin, mean corpuscular volume (<strong>MCV</strong>) of the blood cells; the concentration of lymphocytes, neutrophile granulocyte bands and segments. Among biochemical markers, temperature affected cytoplasmic and mitochondrial enzymes, ammonia and triglyceride levels in blood plasma. Elevated antioxidant activity was observed in muscle, intestine and liver tissues. Oxygen levels demonstrated significant effects on growth, feed intake and conversion, the MCV of the blood cells, the concentration of the glucose, lactate and ammonia in blood plasma, and antioxidant biomarkers in the liver tissue. The analysis indicated a significant effect of oxygen on energy metabolism. The results showed hyperoxia under 23 °C create conditions for the highest growth and feed intake, high feed utilisation. There are, however, concerns about the physiological conditions and welfare of intensively cultured pikeperch juveniles, as higher feed intake led to increased visceral fat content in the body, elevated antioxidant activity in the liver, muscle and intestine tissues, morphology of blood cell, and energy metabolism.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142548759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Amylase activity across black soldier fly larvae development and feeding substrates: insights on starch digestibility and external digestion","authors":"","doi":"10.1016/j.animal.2024.101337","DOIUrl":"10.1016/j.animal.2024.101337","url":null,"abstract":"<div><div>Black soldier fly larvae (<strong>BSFL</strong>; <em>Hermetia illucens</em>) hold promise for converting biowaste into proteins and lipids for feed. Dietary starch is efficiently digested by the larvae and influences larval performance, but the mechanisms of starch digestion remain poorly understood. This study investigated changes in individual weight and amylase activity in BSFL after 4, 7 and 11 days of feeding for five substrates varying in starch content and type: chicken feed (<strong>CF</strong>), corn gluten feed (<strong>CGF</strong>), wheat bran (<strong>WB</strong>), wheat distillers grain (<strong>WDG</strong>) and discarded potatoes (<strong>DP</strong>). Substrate amylase activities were also measured with and without larvae (feeding and fermenting trays, respectively) over time in order to explore external digestion. Feed conversion ratio (<strong>FCR</strong>) and estimated digestibility (<strong>ED</strong>) of DM and starch were assessed at the end of the experiment. The ranking for best FCR was CF, WB, CGF, WDG and DP. In feeding trays, ED of DM was 69.8 ± 1.8, 59.5 ± 2.9, 58.6 ± 0.7, 45.4 ± 0.6 and 19.5 ± 0.8% in CF, DP, WB, CGF and WDG, respectively. Estimated digestibility of starch reached 100% with WB and CGF, followed by CF (88.2 ± 2.3%), DP (85.2 ± 1.2%) and WDG (43.1 ± 1.0%). Larval amylase activity increased with growth for all substrates and dropped when approaching pupation. No relationship was found between larval amylase activity and substrate starch or other nutrient content, but a negative correlation was reported with the reducing sugar content of the larvae, suggesting glucose repression of amylase production. Amylase activity decreased with time in all feeding and fermenting substrates except WDG and DP. <em>In vitro</em> degradation assays indicated that BSFL amylase was nine times more efficient on raw corn or wheat starch than on raw potato starch, highlighting that starch structure is a major driver of digestibility. Western blot analysis revealed the presence of BSFL amylase in the feeding substrate, hinting at external digestion. Larval amylase was purified to identify its optimal pH (5.0–6.5) and temperature (70 °C). These results highlight that starch content is not a major driver of amylase activity in BSFL and suggest that other non-investigated factors could have had a crucial impact on the activity of larval digestive enzymes, such as microbial community of the substrate and presence of amylase inhibitors. This study also provides insights into the evolution of BSFL digestive activity during their development and the occurrence of external digestion.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142548748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Comparison of predictive ability of single-trait and multitrait genomic selection models for body growth traits in Maiwa yaks","authors":"","doi":"10.1016/j.animal.2024.101350","DOIUrl":"10.1016/j.animal.2024.101350","url":null,"abstract":"<div><div>Yaks are grazed extensively on the Qinghai–Tibet Plateau, which has a long history of semi-domestication. The predicted weight of yaks over consecutive years helps make strategic decisions when selecting yak calves for breeding. To achieve more accurate predictions of genomic estimated breeding values, we used a dataset comprising the genotype and weight records of 396 Maiwa yaks collected from 2015 to 2020. We compared the predictive accuracy of the genome best linear unbiased prediction (<strong>GBLUP</strong>) model with that of six other models. Based on the GBLUP model, we applied two prediction strategies. In the first strategy, the year was treated as a fixed effect in the GBLUP model, and the kinship from all individuals and the markers were treated as random effects. In the second strategy, all individuals were divided into six age groups, with GBLUP performed for each group, and the phenotypes of the closest age groups were treated as fixed effects. Although the GBLUP model provided better prediction accuracy than other single-trait models, most of the predictive capacity was derived from the best linear unbiased estimation. Additionally, incorporating the phenotype of the closest age group as a factor in multitrait prediction enhanced the accuracy of the model. Our findings provide a robust and credible strategy for predicting continuous economic traits in the presence of strong correlations.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142548749","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Resolving and functional analysis of RNA editing sites in sheep ovaries and associations with litter size","authors":"","doi":"10.1016/j.animal.2024.101342","DOIUrl":"10.1016/j.animal.2024.101342","url":null,"abstract":"<div><div>Sheep litter size is a critical trait in mutton production. While litter size regulation in relation to DNA transcription have been rigorously investigated, the function of RNA editing remains less explored. To elucidate the mechanisms controlling sheep fecundity at the RNA editing level and identify pivotal RNA editing sites, this study scrutinised RNA editing sites (<strong>RESs</strong>) in follicular and luteal phases of ovaries from sheep with high and low fecundity, and the functions of population-specific RESs were subsequently analysed. A total of 2 182 475 RESs, 74.61% of which were A-to-I and C-to-U sites, were identified. These RESs were fairly evenly dispersed over the chromosomes, with 46.8% showing close clustering (inter-site distance &lt; 300 bp). Notably, 93% were primarily situated in intronic and intergenic regions. In the follicular phase, pivotal RESs were found in the introns of genes including LPS responsive beige-like anchor, MCC regulator of Wnt signalling, and RWD domain containing 3, among others, and in the exon region of EvC ciliary complex subunit 2. In the luteal phase, RESs were observed in the introns of genes such as H/ACA ribonucleoprotein assembly factor and SDA1 domain-containing 1, and the exon and 3′UTR regions of polypeptide N-acetylgalactosaminyltransferase 15 and ilvB acetolactate synthase-like, respectively. High-fecundity sheep showed RESs in the follicular phase in genes such as fibrillin 1, cyclin−dependent kinase 6, and roundabout 1, and in genes such as autophagy−related 2B and versican in the luteal phase. Thirteen RESs specific to the follicular phase and eight specific to the luteal phase were identified in high-fecundity sheep ovaries. These RESs offer promising molecular targets and enhance understanding of multiple births in sheep from the perspective of posttranscriptional alterations.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142548760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The birthday problem: repeated sampling of animal populations and ethics of experimental design","authors":"","doi":"10.1016/j.animal.2024.101352","DOIUrl":"10.1016/j.animal.2024.101352","url":null,"abstract":"<div><div>Researchers who use animals in science must balance statistical power with the need to satisfy the three Rs, whereby researchers are required to <em>reduce</em> numbers of animals, <em>refine</em> what they experience, and use alternatives to (<em>replace</em>) higher animals where possible. In repeated sampling over time-series studies, there is potential loss of power as well as ethics implications posed by repeated sampling of individual animals, where this cannot be managed or avoided. Here, we consider the mathematics of repeated sampling from three perspectives: that of the population at large, from the experience of the individual, and the conditional probability of sampled individuals being sampled again. The calculations are illustrated using four theoretical case studies across veterinary epidemiology with different practical implications and a provided R Shiny tool for researchers. Despite the availability of exact calculations, it is necessary to also consider the biological factors which may affect capture and recapture rates in sampling studies such as animal personality and response to capture. Researchers must also choose their question carefully to avoid inappropriate framing of ethical concerns around repeated sampling.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142592028","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Short communication: Do veterinary diagnoses coming from electronic recording system of veterinary treatments have the potential to be used for breeding in small populations? The case of the dual-purpose Alpine Grey cattle breed","authors":"","doi":"10.1016/j.animal.2024.101351","DOIUrl":"10.1016/j.animal.2024.101351","url":null,"abstract":"<div><div>In cattle breeding, emphasis has historically been placed on productive traits, so-called primary traits, while health and fitness traits have been overlooked due to their low heritability and partly negative genetic correlations with productivity. In addition, the recording of phenotypes caused problems due to a lack of high-quality information and / or high costs of recording. This oversight has additionally led to increased incidences of fertility issues and health problems in cattle populations, resulting in economic losses and consumer concerns regarding animal welfare and food safety. This study investigates the potential use of veterinary diagnoses, collected via the Italian electronic recording system of veterinary treatments, for breeding decisions in the local dual-purpose Alpine Grey cattle breed for which the consideration of functional traits in breeding has also become imperative over the last years. The dataset comprised 97 821 records spanning from 2021 to 2023, representing 8 273 individuals and 18 110 lactations of the Alpine Grey breed. Each record documented the administration of treatments for mammary, respiratory, and urogenital pathologies. After data editing and model development, heritability estimates were obtained for each pathology using univariate linear animal models and gibbs sampling algorithms. Results indicate that mammary pathologies affected the highest number of cows (11%), followed by respiratory (4%) and urogenital (5%) pathologies. Heritability estimates ranged from 0.01 to 0.04 across all traits, confirming generally low heritability values. Respiratory pathologies exhibited the highest heritability (0.04; sd 0.04), followed by mammary (0.03; sd 0.01) and urogenital (0.01; sd 0.01) pathologies. This study, although preliminary, provides valuable insights into the health status of local dual-purpose Alpine Grey cattle and highlights the potential of considering veterinary diagnoses for improving animal health and welfare in dairy cattle breeding. However, the low heritability of these traits, which is consistent with literature data, clearly shows the current limitations of using them for breeding. Further, the diagnostic key of the Italian electronic recording system of veterinary treatments should be specified for the use of health data for breeding purposes, as it is formulated in too general manner in its current form. Nevertheless, their significance for animal welfare and economic sustainability underlines the need for their consideration in dairy cattle breeding. Therefore, further research with larger sample sizes and consideration of additional indicators, such as somatic cell counts, is recommended to enhance the accuracy of genetic evaluations and improve breeding strategies for sustainable cattle production.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142529945","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Review: The need for holistic, sector-tailored sustainability assessments for milk- and plant-based beverages.","authors":"E Maree, J N Blignaut, C J L Du Toit, H H Meissner, P Ederer","doi":"10.1016/j.animal.2024.101348","DOIUrl":"https://doi.org/10.1016/j.animal.2024.101348","url":null,"abstract":"<p><p>Sustainable food systems encompass nutrition, the environment and socioeconomics, each aspect requiring unique assessment and consideration. This is especially important in the dairy industry, since livestock contributes 14.5% of global greenhouse emissions while also contributing 49% to global calcium supply and 12% to global protein supply. This necessitates strict measurement to ensure science-based decision-making while producing sustainably, ensuring adequate nutrient supply. This review aimed to identify and evaluate existing measures of sustainability with the goal to generate recommendations for future sustainability measurements. From a nutritional perspective, it identified existing measures such as nutritional life-cycle analysis, hybrid nutrient-rich food index, nutrient-rich food adjusted for adequate intake and nutrient deficiencies, as well as the priority micronutrient density score, as methods which consider broader nutrient profiles and utilise more recent research, and therefore serve as a basis for future models. Major limitations exist in the incorporation of bioavailability or the food matrix effect in such measures, as well as food-group-specific indices. The Prospective Urban Rural Epidemiology healthy diet score also provides promise in serving as an updated version of current dietary guidelines. Environmentally, the life cycle analysis approach forms a detailed basis for environmental footprint assessment, although the practical application thereof in modern agriculture may be cumbersome and may warrant the use of simpler metrics. However, the complexity of sustainability assessments due to differing production methods and system boundaries makes comparisons difficult, which justifies either standardised or contextualised indices. Lastly, socioeconomics which are often measured only via retail price with a focus on economics also deserves consideration of affordability at consumer and producer level by evaluating the effect of the production system on the local and global economy, producer affordability and the potential to improve livelihoods. In conclusion, a localised and holistic measure of sustainability is warranted which is both sector and context-specific and reported in sufficient detail to prevent the masking of poor results due to single metric expressions.</p>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142592026","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genome-wide association studies for milk production traits in two autochthonous Aosta cattle breeds","authors":"","doi":"10.1016/j.animal.2024.101322","DOIUrl":"10.1016/j.animal.2024.101322","url":null,"abstract":"<div><div>Genome-wide association studies (<strong>GWASs</strong>) are used to identify quantitative trait loci for phenotypic traits of interest. The use of multilocus mixed models allows to correct for population stratification and account for long-range linkage disequilibrium. In this study, GWASs were conducted to identify the genetic bases of milk production (milk yield, protein and fat composition, and yield) in two autochthonous dual-purpose cattle breeds from the Aosta Valley. Using either the breeding values or the deregressed proofs, common significative single nucleotide polymorphisms have been identified for milk yield, protein percentage, and fat percentage. Two major quantitative trait loci regions have been identified on the chromosomes 5 and 14 for the fat percentage, harbouring the <em>MGST1, CYHR1, VPS28</em>, and <em>CPSF1</em> genes. For the protein percentage, a candidate region has been identified on BTA 6; in this region, the <em>CSN1S1</em>, <em>CSN2, HSTN, CSN3</em>, and <em>RUFY3</em> genes are annotated. Most of the identified genes have already been associated with milk composition in other studies on cosmopolitan and local cattle. These results show that the genes involved in milk composition quantitative traits in the Aosta cattle are common also in other cattle breeds and they can be further investigated with the use of whole genome sequencing data.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142394996","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}