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Effects of enrichment and heat stress on fluctuating asymmetry and feather structure of broiler chickens. 富集和热应激对肉鸡波动不对称性和羽毛结构的影响。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-04 DOI: 10.1016/j.animal.2026.101795
C L Carvalho, P Soster, B Khalfi, I Khan, K Buyse, C Casteleyn, G Antonissen, F A M Tuyttens

Fluctuating asymmetry (FA) is the small, random difference between the left and right sides of paired traits and is widely used as an indicator of developmental instability and animal welfare. This study investigated whether heat stress (HS) and access to elevated multifunctional platforms influence FA in live birds, carcasses, bones, and feathers, as well as feather morphology and microstructure. In each round, 560 male Ross 308 broilers were reared for 43 days. The facility had two compartments: one under thermoneutral (TN) conditions and the other subjected to HS. Each compartment housed one pen with platforms and one barren pen. HS was applied by raising the temperature to 32 °C for 6 h daily from day 29 to day 40 (except days 34-35). The experiment was conducted over three production cycles. On day 40, 20 birds per group per cycle were selected for live bilateral measurements. On day 42, the same birds were slaughtered and additional bilateral traits were recorded on carcasses and, after cleaning, on bones. First primary feathers from both wings were collected for morphometry and microstructure analyses. Composite FA did not differ for live birds (P = 0.079), carcasses (P = 0.429), or feathers (P = 0.336); however, bones showed a treatment effect (P = 0.029). Bone FA was lower in HS birds with platforms compared with TN birds in barren pens (P = 0.025), but did not differ from TN birds with platforms or HS birds in barren pens. Trait-specific effects were detected for tibiotarsus width (P = 0.026), femur length (P = 0.030) and femur width (P = 0.002). Feather morphometry showed interactions (temperature and enrichment) for rachis length (P < 0.001) and inner vane width (P = 0.001). HS birds in barren pens had the shortest rachises, whereas HS birds with platforms developed longer rachis. For microstructure, interactions were detected for barb width (P < 0.001). Barb width was greater in TN pens with platforms compared to HS pens with platforms. Overall, bone FA was significantly lower in the HS + platform group only when compared with the TN barren group. Feather morphometry and microstructure were highly plastic to treatments, reflecting adaptive responses that may also serve as welfare indicators.

波动不对称(FA)是成对性状左右两侧的小的随机差异,被广泛用作发育不稳定性和动物福利的指标。本研究调查了热应激(HS)和进入高功能平台是否会影响活禽、尸体、骨骼和羽毛的FA,以及羽毛的形态和微观结构。每轮试验选用560只罗斯308雄性肉鸡,饲养43天。该设施有两个隔间:一个处于热中性(TN)条件下,另一个处于HS条件下。每个隔间里有一支有平台的钢笔和一支没有平台的钢笔。从第29天至第40天(除第34-35天外),通过将温度升高至32℃,每天6 h施用HS。实验进行了三个生产周期。第40天,每组每周期选取20只禽鸟进行活体双侧测量。在第42天,同样的鸟被屠宰,并在尸体和清洁后的骨头上记录了额外的两侧特征。采集两翼的初生羽毛进行形态测定和微观结构分析。活禽(P = 0.079)、胴体(P = 0.429)和羽毛(P = 0.336)的复合FA无显著差异;然而,骨骼显示出治疗效果(P = 0.029)。有平台的HS鸟的骨FA低于无平台的TN鸟(P = 0.025),但与有平台的TN鸟和无平台的HS鸟没有差异。胫跗骨宽度(P = 0.026)、股骨长度(P = 0.030)和股骨宽度(P = 0.002)存在性状特异性效应。羽毛形态测定显示温度和富集程度对轴长(P
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引用次数: 0
Postpartum magnesium status as an important risk factor for delayed and persistent subclinical hypocalcaemia in grazing Holstein cattle. 产后镁水平是放牧荷斯坦牛迟发性和持续性亚临床低钙血症的重要危险因素
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-02 DOI: 10.1016/j.animal.2026.101794
P Melendez, B MacKinnon

Subclinical hypocalcaemia (SCH) is a significant metabolic disorder affecting dairy cattle. Research has shown that dairy cows experience three states of SCH, known as transient, delayed, and persistent SCH. Our objective was to identify potential risk factors for dairy cows with delayed and/or persistent SCH that are managed under grazing conditions. Grazing Holstein cows (n = 158) were randomly selected from eighteen farms in southern Chile, of which 39 were in their first lactation (24.7%), 30 were in their second lactation (19.0%), and 89 were in third or more lactations (56.3%). Lactation data and body condition score (BCS) at calving were recorded for each cow. Blood samples were collected at calving and 7 days postpartum to determine concentrations of plasma ionised calcium (iCa) and ionised magnesium (iMg). Using plasma iCa concentration thresholds of ≤ 0.92 mmol/L at calving and ≤ 1.05 mmol/L at 7 days postpartum, cows were classified as normocalcaemic (33.4%), transient SCH (13.3%), delayed SCH (29.3%), and persistent SCH (24.0%). Older cows had significantly higher SCH prevalence at calving compared to younger cows. However, by day 7 postpartum, the proportion of delayed/persistent SCH cases was similar across all three parity groups. The prevalence of SCH over this period remained consistent for first- and second-parity cows. A linear regression model was built to analyse the concentration of plasma iCa at 7 days postpartum. Results showed that plasma iMg concentration at 7 days postpartum, plasma iCa concentration at parturition, parity, and BCS at calving were significant predictors in the final model. A logistic regression model was used to identify risk factors for SCH at 7 days postpartum. The only significant variables in the final model were BCS at calving and plasma iMg concentration at 7 days postpartum. Cows with plasma iMg concentrations ≤ 0.5 mmol/L were 6.26 times more likely to develop persistent or delayed SCH at 7 days postpartum compared to those with plasma iMg concentrations > 0.5 mmol/L. Overall, our results demonstrate that plasma iMg at 7 days postpartum is an important risk factor associated with plasma iCa concentrations and the occurrence of delayed/persistent SCH in grazing dairy cows. Other potential risk factors, such as parity, plasma iCa concentration at calving, and BCS at calving, may also play a role in the presentation of these conditions.

亚临床低钙血症(SCH)是影响奶牛的一种重要代谢紊乱。研究表明,奶牛会经历三种SCH状态,即短暂性SCH、延迟性SCH和持续性SCH。我们的目标是确定在放牧条件下管理延迟性SCH和/或持续性SCH的奶牛的潜在危险因素。从智利南部的18个农场随机选取放牧荷斯坦奶牛158头,其中39头为第一次泌乳(24.7%),30头为第二次泌乳(19.0%),89头为第三次及以上泌乳(56.3%)。记录每头奶牛的泌乳数据和产犊时体况评分(BCS)。产犊和产后7天采集血样,测定血浆离子钙(iCa)和离子镁(iMg)浓度。根据产犊时血浆iCa浓度阈值≤0.92 mmol/L和产后7 d时血浆iCa浓度阈值≤1.05 mmol/L,将奶牛分为正常血钙血症(33.4%)、短暂性SCH(13.3%)、延迟性SCH(29.3%)和持续性SCH(24.0%)。产犊时,老年奶牛的SCH患病率明显高于年轻奶牛。然而,到产后第7天,延迟/持续SCH病例的比例在所有三个胎次组中相似。在此期间,第一胎和第二胎奶牛的SCH患病率保持一致。建立线性回归模型分析产后7 d血浆iCa浓度。结果显示,产后7天的血浆iMg浓度、分娩时的血浆iCa浓度、胎次和产犊时的BCS是最终模型的重要预测因子。采用logistic回归模型确定产后7天发生SCH的危险因素。最终模型中仅有的显著变量是产犊时的BCS和产后7天的血浆iMg浓度。血浆iMg浓度≤0.5 mmol/L的奶牛在产后7天发生持续性或延迟性SCH的可能性是血浆iMg浓度为0.5 mmol/L的奶牛的6.26倍。总之,我们的研究结果表明,产后7天的血浆iMg是与血浆iCa浓度和放牧奶牛发生延迟性/持续性SCH相关的重要危险因素。其他潜在的危险因素,如胎次、产犊时血浆iCa浓度和产犊时BCS,也可能在这些情况的出现中发挥作用。
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引用次数: 0
Effects of undernutrition and hydroxytyrosol supplementation in late pregnancy on cow-calf performance, metabolic and immune status, and newborn vitality in beef herds. 妊娠后期营养不足和补充羟基酪醇对肉牛生产性能、代谢和免疫状态以及新生活力的影响。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-02 DOI: 10.1016/j.animal.2026.101793
L López de Armentia, A Noya, J Álvarez-Rodríguez, D Villalba, B Serrano-Pérez, I Casasús, J L Alabart, A Sanz

In semi-extensive cattle systems, cows may be exposed to undernutrition, which may reduce the productivity of beef herds. The objective of this study was to evaluate the effects of undernutrition and supplementation with hydroxytyrosol (HT, polyphenol derived from olive leaves) during the last third of gestation on cow productivity, metabolic and hormonal profiles, transfer of passive immunity to calves via colostrum, and birth weight and vitality of newborn calves. A total of 109 pregnant beef cows (Parda de Montaña, n = 63; and Pirenaica, n = 46) were assigned into four feeding groups following a 2 × 2 factorial design, according to feeding level (100 vs 60% of nutritional requirements) and dietary HT supplementation (Control vs HT; 0 and 180 mg HT/kg total mixed ration) between 28 and 40 week of gestation. At week 28, all groups (100-Control, 100-HT, 60-Control and 60-HT) were balanced in BW, body condition score (BCS), breed and age. Cow BW and BCS were recorded, and plasma concentrations of non-esterified fatty acids (NEFAs), cholesterol, insulin-like growth factor 1 (IGF-1), glucose, fructosamine and urea were analysed every 3 weeks during the last third of gestation. Cow cortisol was measured in late pregnancy and shortly after parturition. Colostrum and plasma from cows and calves were analysed for immunoglobulin (IgM, IgG) concentrations. At birth, calf weight and a vitality test were recorded. Undernutrition in the last third of pregnancy reduced dam BW at parturition and induced fat mobilisation. Hydroxytyrosol supplementation in the 60-HT group led to a more moderate increase in NEFA and cholesterol levels, along with a lesser decline in IGF-1 levels. Hydroxytyrosol also decreased the dam plasma urea levels. Calves from HT-supplemented dams were heavier at birth. Undernutrition during the last third of gestation resulted in elevated plasma cortisol levels in newborn calves, which persisted for 1 month, while dam cortisol levels were not affected. Plasma IgG concentrations were higher in HT-supplemented dams regardless of feeding level, and higher concentrations of IgM and IgG in colostrum were maintained throughout the first 24 h postpartum in them. Calf vitality was only affected by calving difficulty. Overall, undernutrition during the last third of gestation had negative effects on dam BW, BCS and indicators of metabolic status, partially alleviated by HT supplementation, and increased cortisol levels in newborns. Moreover, HT supplementation increased calf birth weight and helped to maintain colostrum IgM and IgG concentration during the first 24 h after calving.

在半粗放型养牛系统中,奶牛可能会营养不良,这可能会降低肉牛群的生产力。本研究的目的是评估营养不良和在妊娠后期补充羟基酪醇(HT,从橄榄叶中提取的多酚)对奶牛生产力、代谢和激素特征、通过初乳向小牛传递被动免疫以及新生小牛出生体重和活力的影响。采用2 × 2因子设计,将109头妊娠肉牛(Parda de Montaña, n = 63; Pirenaica, n = 46)根据妊娠28 ~ 40周的饲粮水平(100 vs 60%营养需取量)和饲粮羟色胺添加量(对照vs羟色胺;0和180 mg羟色胺/kg混合日粮)分为4个饲喂组。第28周,100-对照、100-HT、60-对照和60-HT各组体重、体况评分(BCS)、品种和年龄平衡。记录奶牛的体重和BCS,并在妊娠后期每3周检测一次血浆非酯化脂肪酸(NEFAs)、胆固醇、胰岛素样生长因子1 (IGF-1)、葡萄糖、果糖胺和尿素的浓度。在妊娠后期和分娩后不久测量奶牛皮质醇。测定奶牛和犊牛初乳和血浆中的免疫球蛋白(IgM、IgG)浓度。出生时,记录小牛体重和活力测试。妊娠后三分之一的营养不良会降低分娩时的体重,并诱发脂肪动员。在60-HT组中补充羟基酪醇导致NEFA和胆固醇水平的适度增加,以及IGF-1水平的较小下降。羟基酪醇也降低了大坝血浆尿素水平。来自ht补充坝的幼崽在出生时更重。妊娠最后三分之一的营养不良导致新生牛犊血浆皮质醇水平升高,持续1个月,而坝皮质醇水平不受影响。无论饲喂水平如何,饲粮中添加ht的母猪血浆IgG浓度均较高,且在产后24 h内初乳中IgM和IgG浓度均保持较高水平。犊牛活力仅受产犊困难的影响。总体而言,妊娠最后三分之一的营养不良会对体重、体重和代谢状态指标产生负面影响,并会增加新生儿的皮质醇水平,而激素补充可以部分缓解这一影响。此外,HT的添加增加了犊牛的初生体重,并有助于维持犊牛后24小时初乳IgM和IgG的浓度。
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引用次数: 0
A study of associations between the salivary metabolite composition, pH, and gastric ulcers in lactating sows 泌乳母猪唾液代谢物组成、pH值与胃溃疡关系的研究。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-01 Epub Date: 2026-01-27 DOI: 10.1016/j.animal.2026.101774
L.C. Salazar , E.M. Baxter , A.B. Lawrence , T. Moses , J.R. Thomson , R.B. D’Eath
Gastric ulcers are highly prevalent in the pig industry and are likely to cause discomfort or pain. However, there are no validated non-invasive methods to diagnose gastric ulcers in living pigs. Such diagnostics may help improve our understanding of gastric ulcers and promote control measures. Saliva protects the buccal mucosa and may play a role in the health of the pars oesophagea (located at the entrance of the stomach). Hence, changes in saliva characteristics could be linked to the occurrence of gastro-oesophageal ulcers. The aim of this feasibility study was to explore two tools that could help with gastric ulcer detection using non-invasive methods in the living pig: salivary metabolite composition and salivary pH. Twenty-six gilts and sows (hereafter sows) designated for culling due to repopulation management participated in this trial. Sows were followed through lactation until weaning to check their general health status. Sows were saliva-sampled prior to euthanasia, which occurred immediately after weaning (at 26 ± 1.5 days after farrowing, mean ± SD). To identify metabolites, global metabolomics and pathway enrichment analysis were performed on individual saliva samples. The salivary pH was measured. Stomachs were assessed postmortem, and stomach integrity was evaluated by assessing the pars oesophagea using two separate scoring systems: (1) a conventional scoring system that assesses the worst lesion present (overall stomach score) and (2) a scoring system that describes each type of lesion present in the pars oesophagea separately (lesion score). All sows had moderate to severe changes in the pars oesophagea, and 69.2% had at least one ulcer. The salivary pH was not related to stomach integrity. Metabolomic analysis identified metabolites that increased or decreased with changes in the pars oesophagea. The pathway enrichment analysis identified various metabolites as part of different metabolic pathways. L-histidine and lipoxin A4, which have been identified in saliva before and may be related to gastric ulceration, were detected. To conclude, this feasibility study identified a small number of salivary metabolites as potential biomarkers of gastric ulceration in lactating sows worthy of investigation in a larger, controlled study. However, the boxplots did not indicate changes in salivary pH with changes in the stomach integrity in these sows. Additionally, this study adds to the existing evidence of gastric ulcers in sows and suggests that it could be an important ‘hidden’ welfare problem.
胃溃疡在养猪业非常普遍,并可能引起不适或疼痛。然而,目前尚无有效的非侵入性方法来诊断生猪胃溃疡。这样的诊断可能有助于提高我们对胃溃疡的认识,并促进控制措施。唾液保护口腔黏膜,并可能在食管部(位于胃入口处)的健康中发挥作用。因此,唾液特征的变化可能与胃食管溃疡的发生有关。本可行性研究的目的是探索两种可以帮助使用无创方法检测活猪胃溃疡的工具:唾液代谢物组成和唾液ph。26只后备母猪和母猪(以下简称母猪)参加了这项试验,这些母猪因种群重新管理而被指定进行扑杀。研究人员对母猪进行了从哺乳到断奶的全程跟踪,以检查母猪的总体健康状况。在断奶后(分娩后26±1.5天,平均±SD)立即对母猪进行安乐死前的唾液取样。为了鉴定代谢物,对个体唾液样本进行了全球代谢组学和途径富集分析。测定唾液pH值。在死后对胃进行评估,并通过使用两种单独的评分系统评估食管部来评估胃的完整性:(1)常规评分系统评估存在的最严重病变(胃总体评分);(2)评分系统分别描述食管部存在的每种病变(病变评分)。所有的母猪都有中度到重度的食管改变,69.2%的母猪至少有一次溃疡。唾液pH值与胃完整性无关。代谢组学分析发现,代谢物随着食管部的变化而增加或减少。途径富集分析确定了各种代谢物作为不同代谢途径的一部分。检测了唾液中可能与胃溃疡有关的l -组氨酸和脂素A4。总之,这项可行性研究确定了少量唾液代谢物作为泌乳母猪胃溃疡的潜在生物标志物,值得在更大规模的对照研究中进行研究。然而,箱线图并没有显示这些母猪唾液pH值的变化和胃完整性的变化。此外,这项研究增加了母猪胃溃疡的现有证据,并表明这可能是一个重要的“隐藏”福利问题。
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引用次数: 0
Homologous seminal plasma addition to thawed goat semen: impact on sperm quality parameters in vitro 在解冻山羊精液中加入同源精浆:对体外精子质量参数的影响。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-01 Epub Date: 2026-01-22 DOI: 10.1016/j.animal.2026.101770
I.C. Esteve , C. Vicente , S. Pérez-Fuentes , M. Cortina , L. Solaro , E.A. Gómez , M.L. Mocé , J. Bernácer , E. Mocé
Seminal plasma is typically removed during the cryopreservation of goat sperm, yet its reintroduction post-thaw has been proposed as a strategy to enhance sperm quality in other species. Despite variable outcomes across species and studies, seminal plasma plays key roles in modulating sperm function and interacting with the female reproductive tract. This study aimed to evaluate the in vitro effects of adding homologous seminal plasma to thawed goat buck semen at different concentrations and from ejaculates of varying initial sperm motility. In the first experiment, thawed samples were diluted with increasing proportions of seminal plasma (1:0, 1:0.25, 1:0.50, 1:0.75, 1:1; volume: volume). After 2 h (h) of incubation at 37 °C, samples with higher proportions of seminal plasma (≥ 1:0.50) showed a significant decrease (P < 0.05) in plasma membrane integrity and a consistent increase in acrosome-reacted sperm compared to controls. In a second experiment, seminal plasma obtained from ejaculates classified by initial motility (very high, high, medium, low) was added to thawed sperm and compared to a control group that received a pooled sample consisting of seminal plasma from ejaculates of all quality categories. Sperm quality decreased when seminal plasma from very high-quality ejaculates was used, while slight improvements were observed with plasma from low-quality ejaculates. These findings suggest that the addition of homologous seminal plasma did not confer significant functional effects related to potential sperm fertility and that ejaculates not suitable for insemination may still serve as viable sources of seminal plasma.
在山羊精子冷冻保存过程中,精浆通常被去除,但在解冻后重新引入精浆被认为是提高其他物种精子质量的一种策略。尽管不同物种和研究的结果不同,但精浆在调节精子功能和与女性生殖道相互作用方面起着关键作用。本研究旨在评价在不同浓度的山羊解冻精液和不同初始精子活力的射精中添加同源精浆的体外效果。在第一个实验中,解冻后的样品用越来越多的精浆稀释(1:0,1:0.25,1:0.50,1:0.75,1:1;体积:体积)。37℃孵育2 h后,精浆比例较高的样品(≥1:0.50)的细胞凋亡率显著降低(P
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引用次数: 0
Genomic insights into egg production in Mahuang chickens: identification of key loci and candidate genes through whole genome sequencing and validation 马黄鸡产蛋的基因组研究:通过全基因组测序和验证鉴定关键位点和候选基因
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-01 Epub Date: 2026-01-20 DOI: 10.1016/j.animal.2026.101762
F. Bordbar , J. Jensen , A.A. Wadood , E. Jebessa , B. Cai , Q. Nie
Genome-wide association studies provide a framework for identifying candidate genes linked to economically significant egg production traits in poultry. This study aimed to elucidate genetic variations influencing key egg production traits, specifically total number of eggs laid, number of eggs laid at 43 weeks, normal egg count, and normal egg rate in Mahuang chickens. Employing a low-coverage whole genome sequencing approach, we generated a comprehensive dataset encompassing 14 million imputed single−nucleotide polymorphisms (SNPs) from 647 individuals, complemented by high-depth sequencing (30×) of 40 chickens. To refine our association signals and address potential linkage disequilibrium (LD), we conducted conditional analyses by incorporating the most significant SNPs within each locus as fixed-effect covariates in the models. This approach allowed us to distinguish independent causal variants from those associated due to LD, leading to more accurate identification of true genetic effects. Our findings uncovered numerous novel SNPs and candidate genes, including the first reported rs7535083 in the LAMC2 gene, which introduces a missense variant (p.Gln726Arg) with potential implications for protein functionality and influence on egg production traits. Enrichment analyses identified significant candidate genes such as HEBP2, LAMC1, and LAMC2, integral to cellular proliferation pathways essential for ovarian follicle development and egg yield. Subsequent validation efforts included Kompetitive Allele Specific PCR (KASP) genotyping and quantitative real-time PCR (qRT-PCR) analysis. KASP assays successfully genotyped 9 out of 11 selected SNPs, confirming allele frequencies consistent with initial findings, particularly highlighting the rs318026917 SNP’s association with the total number of eggs laid. Concurrently, qRT-PCR analysis revealed significant expression variations among candidate genes, emphasising the pivotal roles of LAMC2 and RASA3 in egg production traits. Together, these results identify specific SNPs and candidate genes associated with egg production traits in Mahuang chickens, including a novel missense variant in LAMC2, and establish validated genetic targets for marker-assisted selection and further functional investigation.
全基因组关联研究为鉴定与家禽产蛋性状相关的候选基因提供了一个框架。本研究旨在阐明影响马黄鸡产蛋量关键性状的遗传变异,包括总产蛋量、43周龄产蛋量、正常产蛋量和正常产蛋率。采用低覆盖率全基因组测序方法,我们生成了一个综合数据集,其中包括来自647只鸡的1400万个输入单核苷酸多态性(SNPs),并辅以40只鸡的高深度测序(30倍)。为了完善我们的关联信号并解决潜在的连锁不平衡(LD),我们进行了条件分析,将每个位点内最显著的snp作为模型中的固定效应协变量。这种方法使我们能够将独立的因果变异与LD相关的变异区分开来,从而更准确地识别真正的遗传效应。我们的研究发现了许多新的snp和候选基因,包括LAMC2基因中首次报道的rs7535083,该基因引入了一个错义变体(p.Gln726Arg),可能对蛋白质功能和产蛋性状产生影响。富集分析确定了重要的候选基因,如HEBP2、LAMC1和LAMC2,它们是卵泡发育和卵子产量所必需的细胞增殖途径的组成部分。随后的验证工作包括竞争性等位基因特异性PCR (KASP)基因分型和实时定量PCR (qRT-PCR)分析。KASP分析成功地对11个选择的SNP中的9个进行了基因分型,证实了等位基因频率与最初的发现一致,特别强调了rs318026917 SNP与产卵总数的关联。同时,qRT-PCR分析显示候选基因之间存在显著的表达差异,强调了LAMC2和RASA3在产蛋性状中的关键作用。总之,这些结果确定了与马黄鸡产蛋性状相关的特定snp和候选基因,包括LAMC2的一个新的错义变异,并为标记辅助选择和进一步的功能研究建立了有效的遗传靶点。
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引用次数: 0
Assessing genotype-by-environment interaction in dairy cattle in case of a wide range of production environments, unstructured crossbreeding and no pedigree information 在广泛的生产环境、非结构化杂交和没有系谱信息的情况下,评估奶牛基因型与环境的相互作用
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-01 Epub Date: 2026-01-16 DOI: 10.1016/j.animal.2026.101760
M. Spoelstra , G. Duguma , A. Ebro , J. van der Lee , J. ten Napel
Genetic variation in environmental sensitivity (ES) among breeds underscores the importance of accounting for genotype-by-environment (G × E) interactions in breeding programmes. This is especially true for countries where there is a large variation in location production systems and environmental conditions and where farms use crossbreeding. We present a systematic framework for assessing G × E by combining genomic reconstruction of an individual animal’s breed composition with characterisation of production environment diversity, using factor analysis of mixed data (FAMD) and linear mixed models. Data from 288 farms in Ethiopia were analysed as a case study, which included weekly performance records, household parameters, daily meteorological data, and genotypes from 780 crossbred cows. To test G × E, the following context parameters were considered: agroecological zone (AEZ), market proximity, and farm size. Results showed that the best performances for milk yield (MY), age at first calving (AFC), and calf BW were generally observed on large, urban farms. However, MY, number of services per conception (NSC), and AFC improved with increasing exotic ancestry up to about 60%, beyond which these traits levelled off or declined. Antagonistic relationships among performance traits and their interactions with breed composition were also observed. While MY, calf BW, and AFC generally improved with increasing exotic ancestry, NSC was negatively affected by some ancestral breeds. Specifically, Holsteins exhibited consistently high NSC (3.52–4.66 ± 1.12) across all AEZ and market proximities, highlighting a limitation of their use in crossbreeding strategies with respect to fertility. Our study demonstrates that breed−by−environment interactions can be assessed using field data and genotypes collected from crossbred animals in highly diverse production systems. However, the study design is inevitably unbalanced for breed composition, which limits the ability to assess the performance of breed combinations not well represented in the studied population.
品种间环境敏感性(ES)的遗传变异强调了在育种规划中考虑基因型-环境(gxe)相互作用的重要性。对于地点、生产系统和环境条件差异很大以及农场采用杂交育种的国家尤其如此。本研究利用混合数据因子分析(FAMD)和线性混合模型,将单个动物品种组成的基因组重建与生产环境多样性特征相结合,提出了一个评估gxe的系统框架。作为案例研究,对埃塞俄比亚288个农场的数据进行了分析,其中包括每周业绩记录、家庭参数、每日气象数据和780头杂交奶牛的基因型。为了检验G × E,考虑了以下环境参数:农业生态区(AEZ)、市场邻近程度和农场规模。结果表明,城市大型猪场在产奶量、初产犊龄和犊牛体重方面表现最佳。然而,随着外来血统的增加,MY、每胎服务数(NSC)和AFC提高了约60%,超过这一水平后,这些性状趋于平稳或下降。生产性能性状间的拮抗关系及其与品种组成的相互作用。随着外来血统的增加,MY、犊牛体重和AFC普遍提高,而NSC则受到某些祖先品种的负面影响。具体来说,荷斯坦在所有经济特区和市场附近都表现出一贯的高NSC(3.52-4.66±1.12),这突出了它们在杂交育种策略中使用育性方面的局限性。我们的研究表明,可以利用从高度多样化的生产系统中收集的杂交动物的田间数据和基因型来评估品种与环境的相互作用。然而,品种组成的研究设计不可避免地不平衡,这限制了评估在研究群体中没有很好代表的品种组合的性能的能力。
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引用次数: 0
Incorporating genomic and transcriptomic effects in joint linear and non-linear structural models for predicting complex traits in pigs 结合基因组和转录组效应的联合线性和非线性结构模型预测猪的复杂性状
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-01 Epub Date: 2026-01-20 DOI: 10.1016/j.animal.2026.101765
I-T. Vourlaki, M. Piles, T. Jové-Juncà, Y. Ramayo-Caldas, R. Quintanilla, M. Ballester
Phenotypes in livestock are shaped by genetic variation as well as downstream regulatory mechanisms, making the prediction of complex traits a key challenge for animal breeding. Transcriptomic data represent an intermediate biological layer between genotypes and phenotypes and may capture regulatory signals not fully explained by genomic information alone. The objective of this study was to evaluate the contribution of blood transcriptomic data, alone or combined with genomic information, to predict six immune, stress, and production traits in 255 Duroc pigs. Four traits were closely related to the sampled tissue and timepoint, whereas two were less biologically relevant. Bayesian regression methods (BayesC and RKHS) and a neural network linear mixed model were compared using either all transcripts or subsets selected by Partial Least Squares (PLS). High prediction accuracy was obtained for immunity-related traits, such as gamma delta T cells and leukocyte counts, with correlations of 0.74 and 0.67, respectively, when transcriptomic data were used. Moderate improvements were observed for cortisol prediction (r = 0.39), whereas SNP-based models performed best for carcass weight (r = 0.45). PLS-based feature selection showed that a small subset of features can perform equally well or better than the whole transcriptomic dataset and identified biologically relevant candidate genes, including MAF, SOX13, DDIT4, and FOS. In conclusion, blood transcriptomic data substantially improved prediction performance for traits biologically related to the sampled tissue, whereas SNP-based models performed better for less relevant traits, and combining omics provided only modest and non-significant gains; feature selection was essential to enhance prediction performance, computational efficiency, and to facilitate the identification of immune-related candidate genes.
家畜的表型是由遗传变异和下游调控机制塑造的,这使得复杂性状的预测成为动物育种的一个关键挑战。转录组学数据代表了基因型和表型之间的中间生物学层,并可能捕获无法完全由基因组信息单独解释的调控信号。本研究的目的是评估血液转录组学数据的贡献,单独或结合基因组信息,以预测255头杜洛克猪的6种免疫、应激和生产性状。四个性状与取样组织和时间点密切相关,而两个性状的生物学相关性较低。贝叶斯回归方法(BayesC和RKHS)和神经网络线性混合模型使用所有转录本或偏最小二乘(PLS)选择的子集进行比较。当使用转录组数据时,对免疫相关性状(如γ δ T细胞和白细胞计数)的预测精度很高,相关性分别为0.74和0.67。皮质醇预测有中度改善(r = 0.39),而基于snp的模型对胴体重的预测效果最好(r = 0.45)。基于pls的特征选择表明,一小部分特征的表现与整个转录组数据集一样好,甚至更好,并确定了生物学相关的候选基因,包括MAF、SOX13、DDIT4和FOS。总之,血液转录组学数据大大提高了与样本组织生物学相关的性状的预测性能,而基于snp的模型在相关性较低的性状上表现更好,而结合组学只提供了适度和不显著的收益;特征选择对于提高预测性能、计算效率和促进免疫相关候选基因的识别至关重要。
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引用次数: 0
White and brown layer pullets’ choice of light intensity in relation to their behaviour, age and the time of day 白蛋鸡和褐蛋鸡对光照强度的选择与它们的行为、年龄和一天中的时间有关。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-01 Epub Date: 2026-02-12 DOI: 10.1016/j.animal.2026.101777
J.A.J. van der Eijk , T.G.C.M. van Niekerk , T. Izquierdo Garcia-Faria , M. Wolthuis-Fillerup , J.W. van Riel , D.E. te Beest , I.C. de Jong
For chickens, one of the most important senses is vision and light can influence their behaviour, welfare and productivity. For laying hens, lighting needs will differ depending on the stage of development of the bird, i.e. rearing vs production. The rearing period is essential in the preparation of laying hens for a sustainable laying period with optimal welfare. However, there is little knowledge regarding layer pullet preferences for light intensities. Therefore, we identified white and brown layer pullets’ responses to different light intensities in relation to their behaviour, age and the time of day via preference testing. Day-old chicks from a white (Lohmann LSL Classic) and brown (Lohmann Brown Classic) layer breed were housed till 10 weeks of age (woa) in groups of 24 per pen (8 m2) and seven pens per breed. Pens were divided into four equal sections, with one light intensity per section that switched daily (intended light intensities: 5, 20, 50 and 100 lux, actual light intensities: 8, 35, 80 and 220 lux) and an opening in the centre to all sections. An algorithm automatically counted the number of pullets per section for two days per week (week 2 till week 10) from recordings of each pen. Behaviour was observed via scan sampling at six ages (weeks 1, 2, 4, 6, 8 and 10). White and brown pullets showed more active behaviours (i.e., standing, locomotion and foraging) at higher light intensities, while inactive behaviour was shown more at lower light intensities, suggesting zones for specific behaviours can be created within a pullet house using light intensity. White and brown pullets preferred high light intensities throughout the experimental period, which was more clear for brown than for white pullets, suggesting it may be important to adapt light intensity programmes to each breed. At the start and end of the light period, high light intensities were preferred by white and brown pullets, which was again more clear for brown than white pullets, suggesting it may be important to adapt light intensity programmes to the time of day. Interestingly, pullets from both breeds were always present at each intensity, suggesting that providing pullets a choice in light intensity may improve their welfare.
对于鸡来说,最重要的感官之一是视觉,光线会影响它们的行为、福利和生产力。对于蛋鸡来说,光照需求会根据鸡的发育阶段而有所不同,即饲养和生产。饲养期是为蛋鸡准备可持续的产蛋期和最佳福利的关键。然而,关于层羽状体对光强的偏好知之甚少。因此,我们通过偏好测试确定了白色和棕色蛋鸡对不同光强度的反应与它们的行为、年龄和一天中的时间有关。选用白色(Lohmann LSL Classic)蛋鸡和棕色(Lohmann brown Classic)蛋鸡,以每栏(8 m2) 24只、每栏7只为一组,饲养至10周龄。钢笔被分成四个相等的部分,每个部分有一个光强,每天切换(预期光强:5、20、50和100勒克斯,实际光强:8、35、80和220勒克斯),并在中心打开所有部分。算法每周2天(第2周至第10周)从每只笔的记录中自动计算每切片的幼崽数量。通过扫描取样观察6个年龄段(第1、2、4、6、8和10周)的行为。白色和棕色的小鸡在较高的光照强度下表现出更活跃的行为(即站立、运动和觅食),而在较低的光照强度下表现出更多的不活跃行为,这表明可以在使用光照强度的情况下在小鸡窝中创建特定行为的区域。在整个试验期间,白色和棕色小母鸡更喜欢高光强,棕色小母鸡比白色小母鸡更明显,这表明为每个品种调整光强计划可能很重要。在光照期的开始和结束时,白色和棕色小鸡更喜欢高光强度,棕色小鸡比白色小鸡更明显,这表明根据一天中的时间调整光照强度计划可能很重要。有趣的是,两个品种的幼崽总是出现在每种强度下,这表明为幼崽提供光强度选择可能会改善它们的福利。
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引用次数: 0
Effects of α-ketoglutarate and its calcium salt on growth performance, health, rumen fermentation and microbiota in fattening Hu lambs α-酮戊二酸及其钙盐对育肥湖羊生长性能、健康状况、瘤胃发酵及微生物群的影响
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2026-03-01 Epub Date: 2026-02-10 DOI: 10.1016/j.animal.2026.101776
H.W. Duan , L. Li , H.B. Ye , H. Zhang , T. Sun , J.S. Shen , W.Y. Zhu , S.Y. Mao
Rumen microbes govern energy supply and nitrogen use in sheep. α-Ketoglutarate (AKG) links carbon and nitrogen metabolism and may support microbial synthesis, yet its in vivo effects on fermentation, digestibility, and antioxidant status in fattening lambs remain unclear. This study investigated the effects of AKG and its calcium salt (Ca-AKG) on growth performance, antioxidant capacity, nutrient digestibility, rumen fermentation, and rumen microbiota in fattening Hu lambs. Eighteen 3-month-old male Hu lambs (22.2 ± 1.08 kg) were randomly assigned into three groups (n = 6): (1) control group, fed a basal diet; (2) AKG group, fed the basal diet + 0.5% AKG (DM basis); and (3) Ca-AKG group, fed the basal diet + 0.5% Ca-AKG (DM basis). The experimental period lasted 9 weeks, including a 2-week adaptation phase followed by a 7-week measurement period. No treatment × week interaction was observed for growth performance, rumen fermentation, or blood biochemical parameters (P > 0.05). AKG tended to increase average daily gain (ADG) and gain-to-feed ratio (G: F) in fattening Hu lambs (0.05 < P < 0.10), but did not affect final BW (P > 0.10). In contrast, Ca-AKG improved DM intake, ADG, G: F, and final BW (P < 0.05). AKG increased rumen butyrate concentration and apparent digestibility of NDF, ADF, and ether extract, while Ca-AKG elevated butyrate, total volatile fatty acid (VFA) concentration, and ether extract digestibility (P < 0.05). Neither treatment affected organic matter digestibility nor rumen pH (P > 0.05). Both AKG and Ca-AKG reduced plasma bicarbonate and glucose but increased triglycerides (P < 0.05). Significant treatment × week interactions were observed for plasma superoxide dismutase and catalase (P < 0.05). AKG reduced superoxide dismutase activity at week 4 (P < 0.05), but not at week 7 (P > 0.05). Ca-AKG decreased superoxide dismutase activity (P < 0.05) at week 4 without affecting catalase activity (P > 0.05); however, it enhanced both enzymes at week 7 (P < 0.05). Neither treatment altered alpha or beta diversity of rumen bacteria (P > 0.05). However, Ca-AKG increased Bacteroidetes and decreased Firmicutes at the phylum level (P < 0.05), elevated Prevotella and Prevotellaceae-UCG-003, and reduced Quinella, Christensenellaceae-R-7 group, and Aeromonas at the genus level. In summary, Ca-AKG more effectively promotes VFA synthesis, enhances plasma antioxidant capacity, and improves growth performance than AKG in fattening Hu lambs.
绵羊瘤胃微生物控制着能量供应和氮的利用。α-酮戊二酸(AKG)与碳氮代谢有关,可能支持微生物合成,但其对育肥羔羊体内发酵、消化率和抗氧化状态的影响尚不清楚。本试验研究了AKG及其钙盐(Ca-AKG)对育肥湖羊生长性能、抗氧化能力、营养物质消化率、瘤胃发酵和瘤胃微生物群的影响。选取18只3月龄湖羊公羔(体重22.2±1.08 kg),随机分为3组(n = 6):(1)对照组,饲喂基础饲粮;(2) AKG组,饲喂基础饲粮+ 0.5% AKG (DM基础);(3) Ca-AKG组,饲喂基础饲粮+ 0.5% Ca-AKG (DM基础)。试验期9周,其中预试期2周,测量期7周。各组生长性能、瘤胃发酵和血液生化指标均未见交互作用(P < 0.05)。AKG有提高育肥湖羊羔羊平均日增重(ADG)和料重比(G: F)的趋势(0.05 ~ 0.10)。相比之下,Ca-AKG提高了DM摄入量、平均日增重、G: F和最终体重(p0.05)。AKG和Ca-AKG均降低了血浆碳酸氢盐和葡萄糖,但升高了甘油三酯(p0.05)。Ca-AKG降低了超氧化物歧化酶活性(p0.05);但在第7周时,两种酶均增强(p0.05)。然而,Ca-AKG在门水平上增加拟杆菌门,减少厚壁菌门(P
{"title":"Effects of α-ketoglutarate and its calcium salt on growth performance, health, rumen fermentation and microbiota in fattening Hu lambs","authors":"H.W. Duan ,&nbsp;L. Li ,&nbsp;H.B. Ye ,&nbsp;H. Zhang ,&nbsp;T. Sun ,&nbsp;J.S. Shen ,&nbsp;W.Y. Zhu ,&nbsp;S.Y. Mao","doi":"10.1016/j.animal.2026.101776","DOIUrl":"10.1016/j.animal.2026.101776","url":null,"abstract":"<div><div>Rumen microbes govern energy supply and nitrogen use in sheep. α-Ketoglutarate (<strong>AKG</strong>) links carbon and nitrogen metabolism and may support microbial synthesis, yet its <em>in vivo</em> effects on fermentation, digestibility, and antioxidant status in fattening lambs remain unclear. This study investigated the effects of AKG and its calcium salt (<strong>Ca-AKG</strong>) on growth performance, antioxidant capacity, nutrient digestibility, rumen fermentation, and rumen microbiota in fattening Hu lambs. Eighteen 3-month-old male Hu lambs (22.2 ± 1.08 kg) were randomly assigned into three groups (n = 6): (1) control group, fed a basal diet; (2) AKG group, fed the basal diet + 0.5% AKG (DM basis); and (3) Ca-AKG group, fed the basal diet + 0.5% Ca-AKG (DM basis). The experimental period lasted 9 weeks, including a 2-week adaptation phase followed by a 7-week measurement period. No treatment × week interaction was observed for growth performance, rumen fermentation, or blood biochemical parameters (<em>P</em> &gt; 0.05). AKG tended to increase average daily gain (<strong>ADG</strong>) and gain-to-feed ratio (<strong>G: F</strong>) in fattening Hu lambs (0.05 &lt; <em>P</em> &lt; 0.10), but did not affect final BW (<em>P</em> &gt; 0.10). In contrast, Ca-AKG improved DM intake, ADG, G: F, and final BW (<em>P</em> &lt; 0.05). AKG increased rumen butyrate concentration and apparent digestibility of NDF, ADF, and ether extract, while Ca-AKG elevated butyrate, total volatile fatty acid (<strong>VFA</strong>) concentration, and ether extract digestibility (<em>P</em> &lt; 0.05). Neither treatment affected organic matter digestibility nor rumen pH (<em>P</em> &gt; 0.05). Both AKG and Ca-AKG reduced plasma bicarbonate and glucose but increased triglycerides (<em>P</em> &lt; 0.05). Significant treatment × week interactions were observed for plasma superoxide dismutase and catalase (<em>P</em> &lt; 0.05). AKG reduced superoxide dismutase activity at week 4 (<em>P</em> &lt; 0.05), but not at week 7 (<em>P</em> &gt; 0.05). Ca-AKG decreased superoxide dismutase activity (<em>P</em> &lt; 0.05) at week 4 without affecting catalase activity (<em>P</em> &gt; 0.05); however, it enhanced both enzymes at week 7 (<em>P</em> &lt; 0.05). Neither treatment altered alpha or beta diversity of rumen bacteria (<em>P</em> &gt; 0.05). However, Ca-AKG increased Bacteroidetes and decreased Firmicutes at the phylum level (<em>P</em> &lt; 0.05), elevated <em>Prevotella</em> and <em>Prevotellaceae-UCG-003</em>, and reduced <em>Quinella</em>, <em>Christensenellaceae-R-7</em> group, and <em>Aeromonas</em> at the genus level. In summary, Ca-AKG more effectively promotes VFA synthesis, enhances plasma antioxidant capacity, and improves growth performance than AKG in fattening Hu lambs.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":"20 3","pages":"Article 101776"},"PeriodicalIF":4.2,"publicationDate":"2026-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147327451","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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