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High canola meal in sow diets: effects on reproduction, piglet growth, milk composition, serum metabolites, and nutrient digestibility over two reproductive cycles 母猪日粮中添加高油菜籽粕:对两个繁殖周期内繁殖、仔猪生长、乳成分、血清代谢物和营养物质消化率的影响
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-23 DOI: 10.1016/j.animal.2025.101752
X. Zhang , A. Rogiewicz , E.G. Kiarie , C. Yang , C.M. Nyachoti
Feed costs and global demand for soybean meal are increasing, reducing profitability in pig industry. Canola meal is the second most used protein source in swine diets, but evidence on its long-term effects across successive sow parities is limited. This study investigated the effects of canola meal inclusion as the main protein source in sow diets on sow and litter performance over two reproductive cycles. Sixty-eight sows from two batches were randomly allotted one of two diets on d 80 of pregnancy. The control diet (CON) consisted of corn, barley and soybean meal, and the treatment diet (CSCM) consisted of corn, barley and canola meal, included at 14.50% for gestating and 24.50% for lactating sows. The BW and backfat thickness of sows were measured on d 1, d 35, d 80, and d 111 of pregnancy, and on d 1 and d 21 post-farrowing. On d 1 and d 19 post-farrowing, piglets were weighed and milk and blood samples from sows were collected to determine milk composition and serum metabolites. Fecal samples from sows were collected on d 110 of gestation and d 19 of lactation to determine apparent total digestibility (ATTD) determination. Data were analyzed using a randomized complete block design with repeated measures. Results showed that sow BW and backfat thickness were unaffected by diet. Sows fed the CSCM diet exhibited lower (P < 0.05) BW gain than CON sows during late gestation in the first cycle but not in the second cycle. Litter performance, including weight and size, was unaffected by dietary treatment, though litter weight at birth was higher (P < 0.05) in the second cycle than in the first cycle. The composition of colostrum and milk was generally unaffected by diet or cycle, except for colostrum fat, which showed a significant interaction (P < 0.05) between diet and cycle. Serum metabolites revealed tendencies (P < 0.10) for increased creatinine and gamma-glutamyl transferase (GGT) with the CSCM diet, while reproductive cycle effects were observed for GGT, cholesterol, calcium, protein, and albumin levels. Apparent total tract digestibility of nutrients was not significantly influenced by diet or reproductive cycle, though the CSCM diet tended to reduce (P = 0.06) the ATTD of CP. In conclusion, sow diets containing 14.50% canola meal during gestation and 24.50% during lactation maintained similar sow reproductive and litter performance comparable with soybean meal-based diets across two reproductive cycles.
饲料成本和全球对豆粕的需求正在增加,降低了养猪业的盈利能力。菜籽粕是猪日粮中第二大蛋白质来源,但其对连续母猪胎次的长期影响的证据有限。本试验研究了在母猪日粮中添加油菜籽粕作为主要蛋白质源对两个繁殖周期母猪和产仔生产性能的影响。试验选取两批68头母猪,在妊娠第80天随机分配两种饲粮中的一种。对照饲粮(CON)由玉米、大麦和豆粕组成,处理饲粮(CSCM)由玉米、大麦和菜籽粕组成,其中妊娠母猪占14.50%,泌乳母猪占24.50%。分别于妊娠第1、35、80、111天和分娩后第1、21天测定母猪体重和背膘厚度。在分娩后第1天和第19天对仔猪进行称重,采集母猪的奶和血样本,测定乳汁成分和血清代谢物。分别于妊娠第110天和哺乳第19天采集母猪粪便样品,测定表观总消化率(ATTD)。数据分析采用重复测量的随机完全区组设计。结果表明,母猪体重和背膘厚度不受饲粮影响。饲喂CSCM日粮的母猪(P
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引用次数: 0
Review: A systematic review on the use and effects of postbiotics on the general health, gut health, and performance of sows and piglets 综述:系统综述了后生物制剂的使用及其对母猪和仔猪整体健康、肠道健康和生产性能的影响。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-23 DOI: 10.1016/j.animal.2025.101749
B. Polimeni, F. Correa, P. Trevisi, D. Luise
Growing concerns over antibiotic resistance have led to restrictions on antimicrobial use in various regions, including the European Union, prompting the search for alternative strategies to promote gut health. Of these, postbiotics have emerged as a promising strategy due to their potential immunomodulatory, anti-inflammatory, and gut barrier-enhancing properties. Despite extensive research regarding human health, the application of postbiotics in swine nutrition remains unexplored, with limited and inconclusive findings. The definition of postbiotics has evolved, leading to inconsistencies in the literature regarding their classification and functional properties. This review aimed to clarify the concept, the definition, and classification, and evaluate the types and effects of postbiotic supplementation on the health and performance of pigs. A literature search was conducted using PubMed, Google Scholar, Web of Science, and Scopus, employing search terms mainly related to “postbiotic preparation” (i.e., cell wall fragments, exopolysaccharides, etc.) and “pig category” (gestating and lactating sows, suckling and post-weaning pigs). The search yielded 2 151 articles (published between 1982 and 2025), and 33 fulfilled the eligibility criteria (studies on swine and studies in which the postbiotic respected the latest definition of the International Scientific Association for Probiotics and Prebiotics). The findings indicate that postbiotics derived from Saccharomyces cerevisiae and Lactobacillus species are the most extensively investigated. Based on the explored studies, the mechanisms of action of the various postbiotics appear to be closely linked to their specific bioactive components and, consequently, to the originating microbial strains. Postbiotics derived from both Saccharomyces cerevisiae and Lactobacillus demonstrated beneficial effects on gut health pillars in both sows and piglets. Sows’ supplementation enhanced immunoglobulin concentrations in blood (31%) and milk (58%) while reducing oxidative stress markers (malondialdehyde, 34%). In weaned pigs, postbiotic supplementation reduced pro-inflammatory cytokines (Tumour Necrosis Factor-α, Interleukin 1β and Interleukin 6) along with improvements in gut morphology parameters and α-diversity. These effects collectively contribute to improved overall health and growth performance in the animals. In conclusion, postbiotic supplementation, whether administered to sows or directly to pigs, appears to support and enhance piglet health and growth, even under challenging conditions. The limited characterisation of the postbiotic formulation employed in the studies precluded definitive attribution of the observed mechanisms of action to specific bioactive constituents. Future research should focus on defining the optimal dosage and timing of supplementation to exploit the potential benefits of postbiotics fully.
对抗生素耐药性的担忧日益加剧,导致包括欧盟在内的各个地区限制使用抗菌素,促使人们寻找促进肠道健康的替代策略。其中,由于其潜在的免疫调节、抗炎和肠道屏障增强特性,后生物制剂已成为一种有前途的策略。尽管对人类健康进行了广泛的研究,但后生物制剂在猪营养中的应用仍未得到探索,研究结果有限且不确定。后生物的定义已经演变,导致文献中关于其分类和功能特性的不一致。本文旨在阐明生物后添加物的概念、定义和分类,并评价生物后添加物的种类及其对猪健康和生产性能的影响。使用PubMed、谷歌Scholar、Web of Science和Scopus进行文献检索,检索词主要与“后生物制剂”(即细胞壁片段、胞外多糖等)和“猪类”(妊娠和哺乳母猪、哺乳和断奶后猪)相关。研究人员检索了2151篇文章(发表于1982年至2025年之间),其中33篇符合资格标准(对猪的研究和对益生菌和益生元国际科学协会最新定义的后生物的研究)。研究结果表明,从酿酒酵母和乳杆菌中提取的后生菌是研究最广泛的。根据所探索的研究,各种后生物制剂的作用机制似乎与其特定的生物活性成分密切相关,因此与起源微生物菌株密切相关。从酿酒酵母和乳酸菌中提取的益生菌对母猪和仔猪的肠道健康都有有益的影响。母猪的添加提高了血液(31%)和牛奶(58%)中的免疫球蛋白浓度,同时降低了氧化应激标志物(丙二醛,34%)。在断奶仔猪中,添加益生后可降低促炎细胞因子(肿瘤坏死因子-α、白细胞介素1β和白细胞介素6),同时改善肠道形态参数和α-多样性。这些影响共同有助于改善动物的整体健康和生长性能。综上所述,无论是给母猪还是直接给猪补充后生物制剂,似乎都能支持和促进仔猪的健康和生长,即使在具有挑战性的条件下也是如此。研究中使用的生物后制剂的有限特征排除了观察到的作用机制与特定生物活性成分的明确归因。未来的研究应侧重于确定最佳剂量和补充时间,以充分利用后生物制剂的潜在益处。
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引用次数: 0
Arterial blood ionised calcium activity in periparturient Holstein cows fed an alkaline low-energy density or acidifying high-energy density close-up prepartum rations 饲喂碱性低能量密度或酸化高能量密度近距离预备饲料对围产期荷斯坦奶牛动脉血离子钙活性的影响。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-23 DOI: 10.1016/j.animal.2025.101753
M.B. Samarasinghe , L.E. Hernández-Castellano , N.B. Kristensen , M. Larsen
Periparturient dairy cows often experience metabolic and health challenges due to impaired Ca homeostasis. Therefore, improving Ca metabolism and monitoring functional Ca status are essential during this critical transition phase. The objective was to test the effects of different feeding strategies in the close-up dry period on arterial blood ionised Ca concentration (iCa) of periparturient Holstein cows. A total of 28 Holstein dry cows were fed a common far-off dry cow ration (FAR; grass silage and barley straw-based, dietary cation–anion difference (DCAD) of +300 mEq/kg DM) and randomly allocated to four experimental treatments at the beginning of the close-up period (−21 days relative to expected parturition). The treatments were (1) continuation of FAR ration (FAR; n = 7), (2) high-energy acidifying ration with MgCl2 (MGC-70; maize silage and mechanically expelled rapeseed cake based, DCAD of −70 mEq/kg DM, n = 6), (3) high-energy acidifying ration with MgCl2 and NH4Cl (MGC-100; maize silage and mechanically expelled rapeseed cake based, DCAD of −100 mEq/kg DM, n = 7), (4) a 7 days transition diet (grass silage:MGC-70 ratio of 20:80 DM basis, DCAD of 0 mEq/kg DM), followed by 14 days of MGC-100 feeding (OVE; n = 8). During the close-up period, urine samples were collected weekly. Arterial blood samples were collected on −12, +0.5, +1.5, and +2.5 days relative to parturition by puncturing the arteria auricularis caudalis. On −7 day relative to parturition, urine pH in MGC-70, MGC-100 and OVE was lower than in FAR, indicating metabolic acidosis. Furthermore, MGC-100 and OVE had lower blood pH than FAR on −12 day relative to parturition. Although having higher postpartum arterial blood pH, cows fed acidifying close-up diets had a higher postpartum iCa than FAR. Tendency for an increased arterial iCa was detected in MGC-100 already on +0.5 day postpartum and MGC-70 tended to have an increased iCa on +2.5 day relative to parturition. Plasma total Ca concentration (tCa) was greater in cows fed acidifying close-up diets compared with FAR on +2.5 day, but tCa was not affected by treatments on +0.5 day and +1.5 day relative to parturition. Therefore, the present results indicate that the determination of physiologically active Ca status in periparturient dairy cows can differ depending on the chosen biological indicator (iCa vs tCa). Overall, feeding maize silage-based acidifying close-up rations improved iCa status in periparturient cows. Sampling of arterial blood from the arteria auricularis caudalis is a method to be considered in future studies evaluating functional Ca status.
由于钙稳态受损,围产期奶牛经常经历代谢和健康挑战。因此,在这个关键的过渡阶段,改善钙代谢和监测功能钙状态是必不可少的。目的是测试近距离干燥期不同喂养策略对围产期荷斯坦奶牛动脉血离子钙浓度(iCa)的影响。选取28头荷斯坦干奶牛,在泌乳期开始(相对于预产期-21 d),饲喂普通远房干奶牛日粮(FAR;草青贮和大麦秸秆为基础,饲粮正负离子差(DCAD)为+300 mEq/kg DM),随机分为4个试验处理。处理为(1)继续进行FAR日粮(FAR, n = 7),(2)以MgCl2高能酸化日粮(MGC-70,玉米青贮和机械排油菜籽饼为基础,DCAD为-70 mEq/kg DM, n = 6),(3)以MgCl2和NH4Cl高能酸化日粮(MGC-100;(4)饲喂7 d过渡饲粮(草料青贮:MGC-70比例为20:8 DM, DCAD为0 mEq/kg DM),然后饲喂14 d MGC-100 (OVE, n = 8)。在近距离观察期间,每周采集尿样。分别于分娩前-12、+0.5、+1.5、+2.5 d穿刺耳尾动脉采集动脉血。相对于分娩-7天,MGC-70、MGC-100和OVE的尿液pH值低于FAR,提示代谢性酸中毒。此外,MGC-100和OVE在分娩后第12天的血pH值低于FAR。虽然饲喂酸化近距离日粮的奶牛产后动脉血pH值较高,但其产后iCa高于FAR。MGC-100在产后0.5天就有动脉iCa升高的趋势,MGC-70在产后2.5天就有动脉iCa升高的趋势。与FAR相比,饲喂酸化近距离日粮的奶牛在+2.5天血浆总钙浓度(tCa)更高,但与分娩相比,+0.5天和+1.5天的tCa没有受到不同处理的影响。因此,目前的结果表明,围产期奶牛生理活性钙状态的测定可能因所选择的生物指示剂(iCa和tCa)而异。总体而言,饲喂玉米青贮酸化近距离口粮改善了围产期奶牛的iCa状况。从耳尾动脉采血是未来研究中评估功能钙状态的一种方法。
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引用次数: 0
Genetic parameters of lamb leather and wool traits in Lacaune dairy sheep 拉库恩奶羊羔羊皮革和羊毛性状的遗传参数。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-23 DOI: 10.1016/j.animal.2025.101750
H. Largant , L. Drouilhet , F. Woloszyn , F. Plisson-Petit , S. Lucas , J.-C. Duchêne , D. Allain , H. Larroque
Lacaune lamb skins are well known for their high quality and are widely used in the leather industry and luxury ready-to-wear fashion. However, in France, the quality of this leather has declined over recent decades, primarily due to two major defects: pinhole and straw-like bushiness. The study aimed to estimate the genetic parameters of these defects and wool traits, and to assess the genetic correlations between these traits and traits currently under selection in the Lacaune breed. To investigate the genetic determinism of these defects, around 1 400 Lacaune lambs, from 72 rams, were genotyped using the Illumina OvineSNP50 BeadChip and were phenotyped for both leather defects and four wool traits. Environmental factors affecting each studied trait were determined using ANOVA. Then, heritabilities and genetic correlations were estimated by fitting an animal linear model using an average information REML algorithm. The pinhole defect showed a high heritability (0.59 ± 0.07) and was highly genetically correlated to the wool predicted core bulk (rg = 0.54 ± 0.09). The straw-like bushiness defect had a lower heritability (0.26 ± 0.07) and was genetically correlated to the mean fibre diameter (rg = 0.48 ± 0.14). Importantly, neither of the leather defects was highly genetically correlated with the traits currently included in the breed’s total merit index. Therefore, improving leather quality through genetic selection appears feasible and could be pursued alongside the existing breeding objectives for the Lacaune breed in France, and could also be considered in other countries where the Lacaune genetics are exported.
laacaune羔羊皮以其高品质而闻名,广泛用于皮革工业和奢侈成衣时尚。然而,在法国,近几十年来这种皮革的质量有所下降,主要是由于两个主要缺陷:针孔和稻草状的绒毛。本研究旨在估计这些缺陷和羊毛性状的遗传参数,并评估这些性状与拉贡品种目前正在选择的性状之间的遗传相关性。为了研究这些缺陷的遗传决定论,利用Illumina OvineSNP50珠芯片对72只公羊中的1400只拉卡乌恩羔羊进行了基因分型,并对皮革缺陷和4种羊毛性状进行了表型分析。影响各研究性状的环境因素采用方差分析确定。然后,利用平均信息REML算法拟合动物线性模型,估计遗传力和遗传相关性。针孔缺陷具有较高的遗传力(0.59±0.07),与羊毛预测芯粗(rg = 0.54±0.09)具有较高的遗传相关性。秸秆状浓密缺陷遗传力较低(0.26±0.07),与平均纤维直径遗传相关(rg = 0.48±0.14)。重要的是,这两种皮革缺陷与目前该品种的总优点指数中包含的性状都没有高度的遗传相关性。因此,通过遗传选择提高皮革质量似乎是可行的,可以与法国拉贡品种现有的育种目标一起追求,也可以在拉贡遗传出口的其他国家考虑。
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引用次数: 0
Prelamb shearing and its long-term benefits: behavioural and physiological responses of weaned male lambs to social isolation 羔羊前剪羊毛及其长期效益:断奶公羊羔对社会隔离的行为和生理反应。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-18 DOI: 10.1016/j.animal.2025.101746
A. Freitas-de-Melo , L. Lacuesta , J. Fernández , S. Cowie , R. Ungerfeld
Prelamb shearing enhances neonatal ability to cope with environmental challenges after birth, but there is scarce information on its long-term effects. The aim of the study was to determine whether the physiological and behavioural responses to social isolation in a novel environment differ in weaned male lambs born to ewes shorn or not at mid-gestation (Sh and Con, respectively). On day 80 of gestation (winter), 12 multiparous Merino ewes carrying a single male foetus were shorn, while 9 were left unshorn. Ninety-day-old lambs were subjected to a social isolation test in a novel environment. Lambs’ behaviour was video recorded during the test, and physiological responses were determined before and after the test. A fear index was calculated based on the display of fearful and exploratory behaviours. Serum cortisol, triiodothyronine (T3), total protein, albumin, globulin concentrations, maximum eye IR temperature, and glycemia increased immediately after social isolation ended (P < 0.05). The area under the curve of T3 concentration tended to be greater in Sh than in Con lambs (P = 0.069). However, the other physiological responses did not differ between groups. The mean duration of vocalisations was shorter in Sh than Con lambs (P = 0.0006). The number (P = 0.001) and the total time sniffing were greater in Sh than in Con lambs (P = 0.002). The fear index was greater in Con than in Sh lambs (P = 0.02). Lambs born to shorn ewes exhibited reduced fear and increased exploration when isolated in a novel environment, indicating they cope better with an acute stress challenge.
羔羊前剪羊毛提高了新生儿出生后应对环境挑战的能力,但关于其长期影响的信息很少。该研究的目的是确定在新环境中对社会隔离的生理和行为反应是否不同于在妊娠中期剪短或未剪短的母羊所生的断奶公羊羔(分别为Sh和Con)。在妊娠第80天(冬季),12只多产美利奴母羊剪毛,其中9只母羊不剪毛。90日龄的羔羊在一个新的环境中进行了社会隔离测试。在测试过程中记录羔羊的行为,并在测试前后确定生理反应。恐惧指数是根据恐惧和探索行为的表现来计算的。社会隔离结束后,血清皮质醇、三碘甲状腺原氨酸(T3)、总蛋白、白蛋白、球蛋白浓度、最高眼红外温度和血糖立即升高(P
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引用次数: 0
Using transcriptomic data to improve the prediction of immunity traits in pigs 利用转录组学数据改进猪免疫特性的预测
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-16 DOI: 10.1016/j.animal.2025.101742
T. Jové-Juncà , V.P. Haas , M.P.L. Calus , M. Ballester , R. Quintanilla
Considering health-related traits among breeding selection criteria has been proposed as a way to improve pig robustness. This study investigated the potential of whole blood RNA-sequencing data for predicting immunity-related traits, stress indicators and carcass weight, using data from 255 pigs belonging to a commercial Duroc population. The prediction performance of mixed models fitting either genomic (G), transcriptomic (T) or both effects as independent (GT) was evaluated and compared. Three additional models addressing the redundant information between G and T were also evaluated: the GTC model that subtracts the genetic effect from the transcriptome, the GTCi model that makes this correction based on the estimated heritability of T effects, and a multiomic model that weights G and T effects in a multiomics relationship matrix. The models including gene expression information captured a higher proportion of variance than the genomic model for all studied traits but carcass weight. Adding transcriptomic effects improved both model fit and phenotypic prediction of all immunity traits, particularly those with a high transcriptomic contribution such as the abundance of T helper and γδ T cells, the haptoglobin concentration and the leukocyte counts. Considering the interaction between genomic and transcriptomic effects led to greater prediction accuracies, with the GTCi model performing the best. Our work demonstrates the value of considering gene expression data to predict immunity traits as well as the importance of adequately modelling the interaction between genomic and transcriptomic effects.
在育种选择标准中考虑与健康相关的性状是提高猪健壮性的一种方法。本研究利用255头杜洛克猪的数据,研究了全血rna测序数据在预测免疫相关性状、应激指标和胴体重方面的潜力。对基因组效应(G)、转录组效应(T)或两者均为独立效应(GT)的混合模型的预测性能进行了评估和比较。另外三种处理G和T之间冗余信息的模型也被评估:GTC模型从转录组中减去遗传效应,GTCi模型根据T效应的估计遗传力进行校正,以及在多组学关系矩阵中加权G和T效应的多组学模型。除胴体重外,包含基因表达信息的模型比基因组模型捕获的方差比例更高。加入转录组效应可以改善所有免疫性状的模型拟合和表型预测,特别是那些具有高转录组贡献的性状,如T辅助细胞和γδ T细胞的丰度、触珠蛋白浓度和白细胞计数。考虑到基因组和转录组效应之间的相互作用,预测精度更高,其中GTCi模型表现最好。我们的工作证明了考虑基因表达数据来预测免疫特性的价值,以及充分模拟基因组和转录组效应之间相互作用的重要性。
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引用次数: 0
Integrating genomic selection and genome-wide association study to enhance growth performance in swamp buffalo 整合基因组选择和全基因组关联研究提高沼泽水牛生长性能。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-04 DOI: 10.1016/j.animal.2025.101729
R. Lomngam , M. Duangjinda , W. Kenchaiwong , K. Kuha , K. Sintala , K. Pothikanit , V. Chankitisakul , W. Boonkum
The Thai swamp buffalo (Bubalus bubalis) represents an important genetic resource in Southeast Asia but exhibits slow growth and limited productivity, constraining meat production efficiency. This study aimed to characterise the genetic architecture of growth traits and evaluate the effectiveness of genomic selection in improving growth performance. Data comprised 2 077 phenotypic records (birth weight, weaning weight at 240 days, and BW at 400 days) and 474 genotyped animals analysed using the weighted single-step genomic best linear unbiased prediction (WssGBLUP) and weighted single-step genome-wide association study (WssGWAS) models. Variance components were estimated via multiple-trait animal models. Heritability estimates from WssGBLUP were moderate to high (0.52, 0.59, and 0.41 for the three traits, respectively), confirming strong genetic control. Incorporating genomic information improved prediction accuracy of genomic estimated breeding values (GEBVs) by 3–8% compared with pedigree-based EBVs. Significant genomic regions associated with growth traits were identified on chromosomes 1, 3, 6, and 23, encompassing 17 major SNPs linked to candidate genes including MUSK, SVEP1, ATP1A2, CASQ1, DMBT1, and CUZD1. These genes are involved in muscle development, calcium homeostasis, cellular growth, and immunity, suggesting pleiotropic roles across growth stages. Strong genetic correlations between weaning and post-weaning BWs (0.80) indicate that selection for weaning weight could yield correlated responses in mature weight. Overall, this study demonstrates the potential of WssGBLUP for enhancing genetic evaluation and provides genomic insights that can guide the implementation of sustainable breeding programmes for growth improvement in Thai swamp buffalo.
泰国沼泽水牛(Bubalus bubalis)是东南亚重要的遗传资源,但其生长缓慢,生产力有限,制约了肉类生产效率。本研究旨在描述生长性状的遗传结构,并评估基因组选择在提高生长性能方面的有效性。数据包括2077个表型记录(出生体重、240天断奶体重和400天体重)和474只基因分型动物,使用加权单步基因组最佳线性无偏预测(WssGBLUP)和加权单步全基因组关联研究(WssGWAS)模型进行分析。方差成分通过多性状动物模型估计。WssGBLUP的遗传力估计为中高(分别为0.52、0.59和0.41),证实了较强的遗传控制。与基于家系的ebv相比,纳入基因组信息可将基因组估计育种值(gebv)的预测精度提高3-8%。在染色体1、3、6和23上发现了与生长性状相关的重要基因组区域,包含17个与候选基因相关的主要snp,包括MUSK、SVEP1、ATP1A2、CASQ1、DMBT1和CUZD1。这些基因参与肌肉发育、钙稳态、细胞生长和免疫,表明在生长阶段起着多效性作用。断奶体重与断奶后体重之间存在较强的遗传相关性(0.80),表明断奶体重的选择在成熟体重中也能产生相关的响应。总的来说,本研究证明了WssGBLUP在加强遗传评估方面的潜力,并提供了可以指导实施可持续育种计划以改善泰国沼泽水牛生长的基因组见解。
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引用次数: 0
Predictive ability and mediation effects of the rumen microbiome on feed efficiency and methane traits in Hereford beef cattle 瘤胃微生物组对赫里福德肉牛饲料效率和甲烷性状的预测能力及中介作用
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-04 DOI: 10.1016/j.animal.2025.101730
P. Peraza , G. Martinez-Boggio , H. Naya , J. Sotelo-Silveira , E.A. Navajas
The ruminant genome exerts moderate control over rumen microbial composition, which is a major determinant of feed efficiency and methane emissions. However, the integration of new omics data, whether for phenotypic prediction, selective breeding, or both, is still under discussion. This study aimed to (1) estimate the heritability and microbiability for residual feed intake (RFI), dry matter intake (DMI), BW, and methane yield (MY); (2) assess the predictive ability of models including host genome and microbiome information; and (3) evaluate the mediation effects of the rumen microbiome on feed efficiency and performance traits. The data set consisted of 537 Hereford bulls and steers with RFI, DMI, and BW records, as well as a subset of them (n = 123) with MY records. All animals were genotyped using 100 k single-nucleotide polymorphism panels, and rumen microbial abundances were determined through enzyme-restriction reduced representation sequencing (ER-RRS) analysis. Heritability estimates ranged from 0.18 for RFI to 0.36 for BW, while microbiability values were moderate (0.16–0.32), indicating that both host genetics and the microbiome significantly contribute to trait variation. We found that the use of genome and rumen microbiome information improved predictive ability for BW (r = 0.48–0.52), as assessed by Pearson’s correlation between observed and predicted values, but not for RFI (r = 0.15–0.14), DMI (r = 0.72–0.73), or MY (r = 0.68–0.69). We also identified several amplicon sequence variants (ASVs) with moderate genetic control and potential mediation effects on RFI, DMI, and BW. However, given the large number of tests performed, these findings should be interpreted with caution due to the increased risk of false positives. Interestingly, our findings show better results for the use of rumen microbiome for selective breeding than for phenotypic prediction in beef cattle. Additionally, we highlighted that using genomics and rumen microbiome data within structural equation models provides new biological insights into animal performance. However, the assumption of no environmental covariance between the host and the microbiome is strict but necessary. Further exploration includes the use of instrumental auxiliary variables that allow for the inclusion of the environmental covariance between the traits of interest.
反刍动物基因组对瘤胃微生物组成有一定的控制作用,而瘤胃微生物组成是饲料效率和甲烷排放的主要决定因素。然而,新的组学数据的整合,无论是表型预测,选择育种,还是两者兼而有之,仍在讨论中。本研究旨在(1)评估剩余采食量(RFI)、干物质采食量(DMI)、体重(BW)和甲烷产量(MY)的遗传力和微生物性;(2)评估包括宿主基因组和微生物组信息在内的模型的预测能力;(3)评价瘤胃微生物组对饲料效率和生产性能的中介作用。数据集包括537头赫里福德公牛和阉牛,具有RFI、DMI和BW记录,以及其中的一部分(n = 123)具有MY记录。所有动物使用100 k单核苷酸多态性面板进行基因分型,并通过酶限制减少代表性测序(ER-RRS)分析确定瘤胃微生物丰度。遗传率估计范围从RFI的0.18到体重的0.36,而微生物率值适中(0.16-0.32),表明宿主遗传和微生物组对性状变异都有显著影响。我们发现,基因组和瘤胃微生物组信息的使用提高了对体重的预测能力(r = 0.48-0.52),通过观察值和预测值之间的Pearson相关性评估,但对RFI (r = 0.15-0.14)、DMI (r = 0.72-0.73)或MY (r = 0.68-0.69)没有提高预测能力。我们还发现了几个扩增子序列变异(asv),它们具有中等程度的遗传控制和对RFI、DMI和体重的潜在中介作用。然而,鉴于进行了大量检测,由于假阳性的风险增加,应谨慎解释这些发现。有趣的是,我们的研究结果表明,在肉牛中使用瘤胃微生物组进行选择性育种的结果比用于表型预测的结果更好。此外,我们强调,在结构方程模型中使用基因组学和瘤胃微生物组数据为动物生产性能提供了新的生物学见解。然而,宿主和微生物组之间没有环境协方差的假设是严格但必要的。进一步的探索包括使用工具辅助变量,允许在感兴趣的特征之间包含环境协方差。
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引用次数: 0
Shortening the measurement period decreases precision in the determination of digestibility and nitrogen balance-related traits in growing bulls 缩短测量周期会降低生长公牛消化率和氮平衡相关性状的测定精度
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-01 DOI: 10.1016/j.animal.2025.101677
R. Bellagi, G. Cantalapiedra-Hijar, R. Baumont, P. Nozière
Digestibility and nitrogen (N) balance (NB) are classically measured in animals held in digestibility stalls for several consecutive days. These measurements are essential references for the development of feed evaluation and animal phenotyping, but raise animal welfare issues. This study quantified how the duration of the measurement period affects the precision − assessed via residual error, animal variance, and intra-class correlation (ICC) − of key traits: voluntary DM intake (VDMI), DM excreted in faeces (FDM), DM digestibility (DMd), N intake (NI), N excreted in urine (UN) and in faeces (FN), NB and finally N use efficiency (NUE). Sixteen Charolais bulls previously adapted to their respective experimental diets were submitted to two 15-day experimental periods (repetitions 1 and 2 separated by 63 days) in digestibility stalls with 5 days of adaptation and 10 days of measurement. Eight bulls received a high crude protein diet (HIGH; 173 g/kg DM), and the other eight a low one (LOW; 116 g/kg DM). From d1 to d10 of measurements, VDMI, total faeces and urine excretion were measured daily. Pooled samples representative of d1-d3, d4-d5, d6-d7, d8, d9 and d1-d10 of offered feeds, individual refusals, urine and faeces were analysed for N content to allow calculation of NB and NUE for several period lengths (from 3 to 10 days). Increasing the number of collection days reduced residual error for all traits, especially for NB and NUE (e.g., NB residual error for the HIGH diet: 10.8 vs 5.1 g/d between 3 and 10 days; NUE residual error: 4.19 vs 1.85%). Measured variables (VDMI, NI, UN, FN) were more precise and repeatable (residual error% 6–9%, ICC 38–64%) than calculated ones like NB and NUE (residual error% 15–18%, ICC 12–25%). For the LOW diet, NUE ICC increased markedly with time (from 24 to 66%), while for the HIGH diet, ICC for NB and NUE stabilised after 8 days. These results indicate that at least 8 days are needed to ensure reliable NB and NUE determination, especially in protein-limited contexts, and provide support for the refining of protocols to improve both data quality and animal welfare.
消化率和氮平衡(NB)通常是在连续几天的消化棚里测量的。这些测量对饲料评价和动物表型的发展是重要的参考,但也引起了动物福利问题。本研究通过残差、动物方差和类内相关性(ICC)量化了测量周期的持续时间如何影响关键性状的精度:DM自愿摄入量(VDMI)、粪便中排泄的DM (FDM)、DM消化率(DMd)、N摄入量(NI)、尿中排泄的N (UN)和粪便中排泄的N (FN)、NB和最终的N利用效率(NUE)。选取已适应相应试验饲粮的16头夏来公牛,分别在消化棚内进行2个试验期(15 d,重复1和2,间隔63 d),其中5 d为适应期,10 d为测量期。8头饲喂高粗蛋白质饲粮(high, 173 g/kg DM), 8头饲喂低粗蛋白质饲粮(low, 116 g/kg DM)。从测量的第1 ~第10天,每天测量VDMI、总粪便和尿液排泄量。对所供饲料d1-d3、d4-d5、d6-d7、d8、d9和d1-d10、个别拒绝、尿液和粪便的样本进行了氮含量分析,以便计算几个周期(3至10天)的NB和NUE。增加收集天数减少了所有性状的残差,特别是NB和NUE的残差(例如,高饲粮的NB残差在3至10天期间分别为10.8和5.1 g/d; NUE残差分别为4.19和1.85%)。测量变量(VDMI, NI, UN, FN)比计算变量如NB和NUE(残差% 15-18%,ICC 12-25%)更精确和可重复(残差% 6-9%,ICC 38-64%)。对于低饲粮,NUE的ICC随时间显著增加(从24%增加到66%),而对于高饲粮,NB和NUE的ICC在8天后趋于稳定。这些结果表明,至少需要8天才能确保可靠的NB和NUE测定,特别是在蛋白质有限的情况下,并为改进方案提供支持,以提高数据质量和动物福利。
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引用次数: 0
Associations between foot lesions and carcass traits in young bulls reared indoors 在室内饲养的公牛足部病变与胴体性状之间的关系
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-12-01 DOI: 10.1016/j.animal.2025.101713
S. Ishak , R. Guatteo , A. Lehebel , N. Brisseau , M. Drouet , A. Duvauchelle-Waché , A. Relun
Even if painful foot lesions are frequent in indoor-finished young bulls, little is known about their economic impact. Previous research has primarily focused on their effect on average daily gain, but their potential impact on carcass weight and quality could further increase their economic cost and relevance to producers. This study aimed to investigate the relationships between foot lesions and key carcass characteristics, namely carcass weight, conformation, fat cover, and age at slaughter, in French beef and dairy young bulls. Postmortem data were collected from 2 089 animals across four slaughterhouses during two seasons in 2023. Each bull underwent a comprehensive foot examination, and lesion annotation was assessed using standardised criteria. Slaughter data, including carcass weight, EUROP muscle development scores, fat cover scores, and age at slaughter, were obtained from slaughterhouse records. Mixed multivariable linear and mixed ordinal logistic regression models were used to assess associations between specific foot lesions and carcass traits, adjusting for breed and other confounding factors, and including farm as a random effect to account for clustering. Results revealed that certain lesions, such as interdigital phlegmon and bulb ulcer, were negatively associated with carcass weight, suggesting a detrimental effect on growth. In contrast, heel horn erosion and various forms of sole and white line haemorrhages were associated with higher carcass weight and better conformation scores. For sole and white line haemorrhages, carcass weight increased progressively with lesion severity, further supporting the hypothesis that heavier animals may be more prone to developing these types of lesions. Heel horn erosion was also the only lesion significantly associated with higher slaughter age. The evidence for associations between foot lesions and fat cover, as well as between digital dermatitis and carcass traits, was inconclusive. Breed also significantly influenced carcass traits, with beef-specialised breeds generally achieving higher carcass weights and conformation scores compared to dairy-origin or crossbred animals. These findings suggest that foot lesions, while sometimes detrimental, may also reflect complex interactions between growth dynamics and foot health. They underscore the need for integrated management strategies that consider foot health not only as a welfare issue but also as a factor influencing or related to carcass performance and economic returns in beef systems.
即使在室内完成的年轻公牛中经常出现疼痛的足部病变,但对其经济影响知之甚少。以前的研究主要集中在它们对平均日增重的影响上,但它们对胴体重和质量的潜在影响可能会进一步增加它们的经济成本和对生产者的相关性。本研究旨在探讨法国肉牛和乳公牛足部病变与胴体关键特征(胴体重量、构象、脂肪覆盖和屠宰年龄)之间的关系。在2023年的两个季节,从四个屠宰场的2089头动物收集了死后数据。每只公牛都进行了全面的足部检查,并使用标准化标准评估病变注释。屠宰数据,包括胴体重、EUROP肌肉发育评分、脂肪覆盖评分和屠宰年龄,均从屠宰场记录中获得。使用混合多变量线性和混合有序逻辑回归模型来评估特定足部病变与胴体性状之间的关系,调整品种和其他混杂因素,并将农场作为随机效应来解释聚类。结果显示,某些病变,如指间痰和鳞茎溃疡,与胴体重呈负相关,表明对生长有不利影响。相反,足跟角侵蚀和各种形式的鞋底和白线出血与较高的胴体重和较好的形态评分相关。对于鞋底出血和白线出血,胴体重量随着病变严重程度的增加而逐渐增加,这进一步支持了较重的动物可能更容易发生这类病变的假设。足跟角糜烂也是唯一与屠宰年龄增高显著相关的病变。足部病变与脂肪覆盖之间的关联,以及指性皮炎与胴体特征之间的关联,尚无定论。品种也显著影响胴体性状,与奶牛或杂交动物相比,牛肉专用品种通常具有更高的胴体重量和构象得分。这些发现表明,足部病变虽然有时是有害的,但也可能反映了生长动力学和足部健康之间复杂的相互作用。他们强调需要综合管理战略,考虑足部健康不仅是一个福利问题,而且是一个影响或与牛肉系统的胴体性能和经济回报相关的因素。
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