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Ningxiang pig-derived Enterococcus hirae HNAU0516 ameliorates postweaning diarrhoea by promoting intestinal health and modulating the gut microbiota in piglets 宁乡猪源性平肠球菌 HNAU0516 通过促进仔猪肠道健康和调节肠道微生物群改善断奶后腹泻症状
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101220

Early weaning-induced stress precipitates diarrhoea, significantly curtailing the growth performance of piglets. A pivotal contributor to this postweaning affliction is the emergence of gut bacterial dysbiosis. Enterococcus hirae, a promising probiotic, has indicated unclear effects and mechanisms on intestinal health. In this study, we investigated the effects and underlying mechanisms of oral supplementation with Ningxiang pig-derived Enterococcus hirae HNAU0516 orally supplementation on the gut bacterial community, immune response and gut barrier function in piglets. 21 d age Duroc × (Landrace × Yorkshire) piglets with a similar BW were randomly allocated to two groups. The Enterococcus hirae HNAU0516 administration group was inoculated orally with Ningxiang pig-derived Enterococcus hirae HNAU0516 throughout the trial period. Conversely, the control group received the same volume of physiological saline. Our findings revealed that Enterococcus hirae HNAU0516 supplementation effectively reduced diarrhoea rates of piglets (P = 0.010). Notably, this probiotic promoted intestinal development and enhanced intestinal barrier function. It also showed potential anti-inflammatory properties. Furthermore, Enterococcus hirae HNAU0516 supplementation significantly remodelled the colonic microbiota and increased the production of acetate (P = 0.007). In conclusion, our study highlights that Ningxiang pig-derived Enterococcus hirae HNAU0516 improves postweaning diarrhoea by promoting intestinal development, enhancing intestinal barrier function, decreasing intestinal permeability, modulating intestinal microbiota, and increasing short-chain fatty acids production.

早期断奶引起的应激会导致腹泻,严重影响仔猪的生长性能。造成断奶后腹泻的一个关键因素是肠道细菌菌群失调。作为一种很有前景的益生菌,氨糖对肠道健康的影响和机制尚不明确。在本研究中,我们探讨了口服补充宁乡猪源性 HNAU0516 对仔猪肠道细菌群落、免疫应答和肠道屏障功能的影响及其潜在机制。将体重相近的 21 日龄杜洛克×(兰德赛×约克夏)仔猪随机分为两组。HNAU0516 给药组在整个试验期间口服宁乡猪源性 HNAU0516。相反,对照组则接受相同剂量的生理盐水。我们的研究结果表明,添加 HNAU0516 能有效降低仔猪腹泻率 ( = 0.010)。值得注意的是,这种益生菌能促进肠道发育,增强肠道屏障功能。它还具有潜在的抗炎特性。此外,补充 HNAU0516 能显著重塑结肠微生物群,并增加醋酸盐的产量 ( = 0.007)。总之,我们的研究强调,宁乡猪源性 HNAU0516 可通过促进肠道发育、增强肠道屏障功能、降低肠道通透性、调节肠道微生物群和增加短链脂肪酸的产生来改善断奶后腹泻。
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引用次数: 0
Effect of butyrate sources in a high-concentrate diet on rumen structure and function in growing rams 高浓缩日粮中的丁酸盐来源对生长期公羊瘤胃结构和功能的影响
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101285

Dietary butyrate is considered to have mostly positive impacts on the ruminal epithelium. However, its supplementation in a high-concentrate diet may not be justified as excessive ruminal butyrate may negatively affect the rumen. Furthermore, butyrate impact on the rumen may depend on its source. Thirty-two Świniarka growing rams (30.6 ± 2.5 kg; 11–14 months of age) were used to investigate the effect of a high-concentrate diet and sodium butyrate (SB) or tributyrin (TB) supplementation in a high-concentrate diet on the rumen structure and selected functions. The rams were allocated to four treatments and fed diets with: (1) low concentrate inclusion (22.5% of diet DM; L); (2) high concentrate inclusion (60% of diet DM; H); (3) H with SB (3.2% of diet DM; H+SB); and (4) H with TB (2.93% of diet DM; H+TB). The preplanned contrasts were used for treatment comparisons (L vs H treatments (H, H+SB, and H+TB), H vs H+SB, and H vs H+TB). The BW, BW gain and DM intake did not differ between treatments. In the atrium ruminis, epithelium thickness did not differ between the L and H treatments (P = 0.46), tended to be higher for H+SB than for H (P = 0.09) but did not differ between H+TB and H (P = 0.61). The expression of downregulated in adenoma was higher for L than for H treatments (P = 0.03) but was not affected by SB or TB supplementation (P ≥ 0.26). In the ventral rumen, the mucosa surface and epithelium thickness were lower for L than for H treatments (P < 0.01), were or tended to be higher for H+SB than for H (P ≤ 0.06) but did not differ between H+TB and H (P ≥ 0.26). The expression of monocarboxylate transporter 1 was lower for L than for H treatments (P = 0.02) but was not affected by SB or TB supplementation (P ≥ 0.28). The expression of putative anion transporter-1 and downregulated in adenoma did not differ between the L and H treatments (P ≥ 0.76); however, expression of the former tended to be higher and the latter tended to be lower for H+SB than for H (P ≤ 0.09), whereas no differences were observed between H+TB and H (P ≥ 0.14). In summary, SB supplementation, but not TB supplementation, in a high-concentrate diet stimulated ruminal epithelium growth and affected short-chain fatty acid transporters expression in the ruminal epithelium.

膳食中的丁酸盐被认为对瘤胃上皮有积极影响。然而,在高浓缩日粮中补充丁酸盐可能并不合理,因为瘤胃中过量的丁酸盐可能会对瘤胃产生负面影响。此外,丁酸盐对瘤胃的影响可能取决于其来源。研究人员使用 32 只生长中的Świniarka 公羊(30.6 ± 2.5 千克;11-14 月龄)研究高浓缩日粮和在高浓缩日粮中添加丁酸钠(SB)或三丁氰菊酯(TB)对瘤胃结构和某些功能的影响。公羊被分配到四个处理中,分别饲喂以下日粮(1) 低精料添加量(占日粮 DM 的 22.5%;L);(2) 高精料添加量(占日粮 DM 的 60%;H);(3) H 加 SB(占日粮 DM 的 3.2%;H+SB);(4) H 加 TB(占日粮 DM 的 2.93%;H+TB)。预先计划的对比用于处理比较(L 与 H 处理(H、H+SB 和 H+TB)、H 与 H+SB 和 H 与 H+TB)。不同处理的体重、增重和 DM 摄入量没有差异。在反刍动物心房中,L 和 H 处理的上皮厚度没有差异(P = 0.46),H+SB 处理的上皮厚度往往高于 H 处理(P = 0.09),但 H+TB 和 H 处理的上皮厚度没有差异(P = 0.61)。腺瘤中的下调表达在 L 处理中高于 H 处理(P = 0.03),但不受补充 SB 或 TB 的影响(P ≥ 0.26)。在腹侧瘤胃中,L处理的粘膜表面和上皮厚度低于H处理(P <0.01),H+SB处理的粘膜表面和上皮厚度高于H处理(P≤0.06),但H+TB处理与H处理之间没有差异(P≥0.26)。单羧酸盐转运体 1 的表达在 L 处理中低于 H 处理(P = 0.02),但不受补充 SB 或 TB 的影响(P ≥ 0.28)。推定阴离子转运体-1和下调阴离子转运体-1在腺瘤中的表达在L处理和H处理之间没有差异(P≥0.76);但是,前者的表达在H+SB处理中往往比H处理高,后者往往比H处理低(P≤0.09),而在H+TB和H处理之间没有观察到差异(P≥0.14)。总之,在高浓缩日粮中补充 SB(而非 TB)可刺激瘤胃上皮细胞生长并影响瘤胃上皮细胞中短链脂肪酸转运体的表达。
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引用次数: 0
Editorial: The reporting of statistics in research articles is key to the understanding and reproducibility of good research in animal science 社论:在研究文章中报告统计数据是理解和再现动物科学优秀研究成果的关键
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101291
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引用次数: 0
Short communication: The orientation of cubicles plays a role – greater deviation from the north–south direction, more technopathies in dairy cows 简短交流:牛舍的朝向有影响--南北方向偏差越大,奶牛的技术病越多
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101295

Magnetic alignment (MA) is a biological phenomenon denoting spontaneous orientation of an animal’s body at rest, when fleeing a threat, hunting, etc. in relation to the Earth’s magnetic field lines, often parallel to the field lines, i.e. in a north–south (NS) direction. MA has been demonstrated in several animal species, including grazing and resting domestic mammals. Based on the assumption that cows prefer to orientate their bodies in the NS direction when resting and sleeping, we hypothesised that MA could contribute to the incidence of technopathies in dairy cows, i.e. various disorders caused by the stable equipment that pose a serious animal welfare problem. It was hypothesised that the incidence of technopathies increases when the cubicles (resting places) orientation deviates from the NS position. The incidence of technopathies was recorded in 34 free-stall dairy farms. The type (hairless patch, scratch, swelling, wound), location and size of the lesions were recorded in almost 1 200 dairy cows. Based on the number of cubicles available and the number of cows, the cubicle-per-cow index (CC index) was calculated and divided into two groups: CC index ≥ 1 for stables with at least one cubicle per cow and CC index < 1 if the number of cows exceeded the number of cubicles available. The orientation of the cubicles was determined by the azimuth (the angle between north and the chosen clockwise direction). The farms were categorised into two groups according to azimuth: NS (azimuth deviating ± 15° from north or south, i.e. 345-15° and 165-195°) and non-NS (azimuth 15-165° and 195-345°). We found that the frequency of cows with technopathies was 30% lower in the NS-orientated cubicles and the number of technopathies per cow was 40% lower in the NS-orientated cubicles than in the non-NS-orientated cubicles. In addition, a higher number of technopathies per cow was observed when the CC index was ≥ 1, with a significant difference in the non-NS-aligned cubicles. According to our results, cubicle orientation has some influence on the incidence of technopathies. Although biological phenomena such as MA are seemingly unimportant and usually overlooked, they should be considered in livestock production when planning the positioning of stable equipment/ cubicle.

磁对齐(MA)是一种生物现象,表示动物在休息、逃离威胁、狩猎等情况下身体相对于地球磁力线的自发定向,通常与磁力线平行,即南北(NS)方向。在多个动物物种(包括吃草和休息的家养哺乳动物)中都证明了磁场移动。基于奶牛在休息和睡眠时更喜欢将身体朝向 NS 方向的假设,我们推测 MA 可能是奶牛技术病症(即由牛舍设备引起的各种疾病,造成严重的动物福利问题)发病率的原因之一。我们假设,当隔间(休息场所)的朝向偏离 NS 位置时,技术病的发病率就会增加。在 34 个散栏式奶牛场记录了技术病的发病率。记录了近 1200 头奶牛的病变类型(无毛斑块、抓痕、肿胀、伤口)、位置和大小。根据可用的牛舍数量和奶牛数量,计算出每头奶牛的牛舍指数(CC 指数),并将其分为两组:每头奶牛至少拥有一个隔间的牛舍,CC 指数≥ 1;奶牛数量超过可用隔间数量的牛舍,CC 指数< 1。牛舍的朝向由方位角(北方与所选顺时针方向的夹角)决定。根据方位角将牧场分为两组:NS(方位角偏离北方或南方 ± 15°,即 345-15° 和 165-195°)和非 NS(方位角 15-165° 和 195-345°)。我们发现,与非NS方位的隔间相比,NS方位的隔间中奶牛患锝病的频率低30%,每头奶牛患锝病的数量低40%。此外,当CC指数≥1时,每头奶牛的锝病数量较高,在非NS朝向的隔间中差异显著。根据我们的研究结果,牛舍朝向对技术病的发生率有一定影响。虽然MA等生物现象似乎并不重要,通常也会被忽视,但在畜牧生产中,在规划稳定设备/隔间的定位时应考虑到这些生物现象。
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引用次数: 0
Effects of natural oral alternatives to parental iron supplementation on haematological and health-related blood parameters of organic piglets 天然口服替代父母铁补充剂对有机仔猪血液学和健康相关血液参数的影响
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101194

The most common and efficient iron supply to prevent neonatal anaemia in piglets is the injection of iron dextran or gleptoferron. This treatment is problematic in organic farms because organic specifications strictly limit the use of chemically synthesised allopathic drugs. Based on the observation that piglets raised outdoors rarely develop anaemia, we hypothesised that piglets satisfy their iron needs by ingesting soil from their environment. Therefore, we compared the efficacy of a 100-mg intramuscular iron dextran injection (Iron, 8 litters, n = 98 piglets) at 4 days (d) of age (d4), to a daily ad libitum supply of dried soil (Soil, 8 litters, n = 101) or dried peat-like river silt (Peat, 8 litters, n = 102) from d4 to weaning (at 49 days of age, d49). Pigs were raised according to organic farming rules. Blood was collected on three males and three females per litter on d4, 20, 41, 50 and 69. BW was similar in the three groups on d4, 20, 41, 50 and 69 (P > 0.1). During the experiment, piglets were affected by a severe digestive E. coli episode but litter mortality rate between d4 and d69 did not differ between groups (P > 0.1). Blood haemoglobin concentration (Hb) was similar in all groups on d4, 50 and 69. However, on d20, Hb was higher in Peat and Iron groups than in the Soil group (P < 0.001), and on d41 and d50, Hb was higher in the Peat group than in Iron and Soil groups (P < 0.001). Mean red blood cell volume (RBCV) remained stable over time in the Peat group. In comparison, RBCV dropped in the Soil group on d20 and d41 (P < 0.001), and in the Iron group on d41 (P < 0.001). Soil and Iron group RBCV returned values similar to the Peat group by d69 (P > 0.1). In conclusion, soil supply in the pen was not sufficient to ensure a satisfactory iron intake in piglets, unlike peat-like river silt, which enable to reach haemoglobin concentrations above 80 mg/mL for over 90% of the piglets from d20 and, over 100% of piglets at weaning. The daily supply of the silt proved more efficient than the 100-mg iron injection beyond 20 days.

预防仔猪新生儿贫血最常见、最有效的补铁方法是注射右旋糖酐铁或格列卫铁。这种治疗方法在有机农场存在问题,因为有机农场严格限制使用化学合成的对抗疗法药物。根据室外饲养的仔猪很少出现贫血的观察,我们假设仔猪通过摄取环境中的土壤来满足对铁的需求。因此,我们比较了在仔猪 4 日龄(d4)时肌肉注射 100 毫克右旋糖酐铁(铁,8 窝,n = 98 头仔猪)和从 4 日龄到断奶(49 日龄,d49)期间每天自由供给干土(土,8 窝,n = 101 头仔猪)或干泥炭样河道淤泥(泥炭,8 窝,n = 102 头仔猪)的效果。猪只按照有机农业规则饲养。在 d4、20、41、50 和 69 日龄时,每窝采集 3 头雄性猪和 3 头雌性猪的血液。三个组在 d4、20、41、50 和 69 日龄的体重相似(P > 0.1)。实验期间,仔猪受到严重消化道大肠杆菌病的影响,但第 4 d 和第 69 d 的仔猪死亡率在各组之间没有差异(P > 0.1)。第 4 天、第 50 天和第 69 天,各组的血红蛋白浓度(Hb)相似。然而,在第 20 天,泥炭组和铁组的血红蛋白高于土壤组(P < 0.001);在第 41 天和第 50 天,泥炭组的血红蛋白高于铁组和土壤组(P < 0.001)。泥炭组的平均红细胞体积(RBCV)随着时间的推移保持稳定。相比之下,土壤组的红细胞体积在第 20 天和第 41 天下降(P < 0.001),铁组的红细胞体积在第 41 天下降(P < 0.001)。到第 69 天,土壤组和铁组的 RBCV 恢复到与泥炭组相似的数值(P > 0.1)。总之,圈舍中的土壤供应不足以确保仔猪摄入令人满意的铁,而泥炭样河道淤泥则不同,它能使 90% 以上的仔猪从第 20 d 起血红蛋白浓度超过 80 mg/mL,100% 以上的仔猪在断奶时血红蛋白浓度超过 80 mg/mL。事实证明,20 天后,每天供应淤泥比注射 100 毫克铁剂更有效。
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引用次数: 0
Effect of supplemental milk replacer and liquid starter diet for 4 and 11 days postweaning on intestinal parameters of weaned piglets and growth to slaughter 断奶后 4 天和 11 天补充代乳品和液态开食料对断奶仔猪肠道参数和屠宰前生长的影响
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101271

Reduced piglet feed intake immediately postweaning (pw) leads to disruption of small intestine structure and function and reduced growth. Our objective was to evaluate the effect of providing supplemental milk or liquid starter diet for either 4 or 11 days pw, on intestinal parameters of newly weaned piglets and growth to slaughter. At weaning (28 ± 0.6 days old), five hundred and eighty−seven piglets ((Large White × Landrace) × Duroc) were divided into 59 pen groups, each containing 9–10 same sex (entire male or female) piglets. The pen groups were blocked by sex and weaning weight and provided with ad-libitum access to one of five dietary treatments: (1) Dry pelleted starter diet (control; CON); (2) CON+liquid milk replacer for 4 days pw (M4); (3) CON+liquid milk replacer for 11 days pw (M11); (4) CON+liquid starter diet for 4 days pw (S4) and (5) CON+liquid starter diet for 11 days pw (S11). Pen groups were weighed at weaning, days 11, 20, 28, and 47 pw and at target sale weight. Feed disappearance (on a DM basis) was recorded on each weighing day. On day 7 pw, 10 piglets per treatment were euthanised to collect small intestine tissue samples for determination of villus height (VH), crypt depth and brush-border membrane enzyme activity. Data were analysed using SAS-version 9.4. Between days 0 and 11 pw, M11 increased average daily feed intake by 48% and average daily gain (ADG) by 57% compared to CON (P < 0.05), and increased ADG by 54% (P < 0.05) compared to S4. Piglets on M11 also had improved feed conversion efficiency compared with CON piglets between days 0 and 11 pw. Treatment did not affect growth performance after day 28 pw, or carcass parameters at slaughter. At day 7 pw, M11 piglets had 37% higher jejunal VH than CON piglets (P < 0.05) and S11 piglets had 28% higher ileal VH than S4 piglets (P < 0.05). M11 piglets had up to 150% higher ileal sucrase activity than M4, S4 and S11 piglets (P < 0.05) and 180% higher ileal maltase activity than S4 piglets (P < 0.05). In conclusion, M11 reduced the immediate negative effects of weaning, as it was associated with increased feed intake, growth, brush-border membrane enzyme activity and improved intestinal structure early pw. However, there were no carryover effects of any of the liquid supplements on growth or feed efficiency or carcass weight at slaughter.

断奶后仔猪采食量减少会导致小肠结构和功能紊乱,并降低生长速度。我们的目的是评估在断奶后 4 天或 11 天补充牛奶或液体开食料对刚断奶仔猪肠道参数和屠宰前生长的影响。断奶时(28 ± 0.6 日龄),587 头仔猪((大白×陆地赛)×杜洛克)被分成 59 个栏组,每个栏组有 9-10 头相同性别(全雄或全雌)的仔猪。各栏组按性别和断奶体重进行分组,并提供五种日粮处理中的一种:(1)干颗粒开食料(对照组;CON);(2)CON+液体代乳品,4 天龄(M4);(3)CON+液体代乳品,11 天龄(M11);(4)CON+液体开食料,4 天龄(S4);(5)CON+液体开食料,11 天龄(S11)。在断奶、出生后第 11 天、第 20 天、第 28 天和第 47 天以及目标销售体重时,对栏组进行称重。在每个称重日记录饲料消失量(按 DM 计)。在断奶后第 7 天,对每种处理的 10 头仔猪实施安乐死,以收集小肠组织样本,用于测定绒毛高度(VH)、隐窝深度和刷状缘膜酶活性。数据采用 SAS 9.4 版进行分析。在出生后第 0 天至第 11 天期间,与 CON 相比,M11 的平均日采食量提高了 48%,平均日增重提高了 57%(P < 0.05);与 S4 相比,M11 的平均日增重提高了 54%(P < 0.05)。与CON仔猪相比,M11仔猪在出生后第0天至第11天的饲料转化效率也有所提高。第 28 天后的生长性能和屠宰时的胴体参数均未受到影响。在出生后第 7 天,M11 仔猪的空肠 VH 比 CON 仔猪高 37%(P < 0.05),S11 仔猪的回肠 VH 比 S4 仔猪高 28%(P < 0.05)。M11 仔猪的回肠蔗糖酶活性比 M4、S4 和 S11 仔猪高 150%(P < 0.05),回肠麦芽糖酶活性比 S4 仔猪高 180%(P < 0.05)。总之,M11 降低了断奶的直接负面影响,因为它与仔猪早期采食量、生长、刷拭膜酶活性的增加和肠道结构的改善有关。然而,任何液体补充剂都不会对生长或饲料效率或屠宰时的胴体重量产生影响。
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引用次数: 0
Use of birth weight as a predictor of genetic merit of subsequent growth traits in Duroc and Landrace pigs 利用出生体重预测杜洛克猪和兰德猪后续生长性状的遗传优势
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101284

Analysis of correlation between the early testable phenotypes of piglets and the final performance of pigs can serve the early selection for breeding. The objectives of this study were to estimate the genetic parameters for birth weight (BtW), age (AGE) and backfat thickness (BF) up to 115 kg BW and to analyse the relationships among these three traits, and to estimate the accuracy of using BtW to predict estimated breeding values (EBVs) of AGE and BF in Landrace and Duroc pigs. Data on 26 614 Landrace and 19 984 Duroc pigs, born between 2001 and 2018, were collected from the core breeding group of a farm. All pigs were recorded for phenotypes including BtW, AGE and BF. The factors affecting these three traits were analysed using R v4.2.0 Software. The population genetic parameters and breeding values of three traits were estimated by using a multitrait animal model based on AI plate of DMU software. Heritabilities for BtW, AGE and BF were moderate to high for Landrace (0.437, 0.282and 0.137, respectively) and Duroc breeds (0.369, 0.279 and 0.148). BtW was genetically correlated with AGE and BF in Landrace (−0.213, 0.037) and Duroc (−0.214, 0.025). AGE was negatively genetically correlated with BF in both Landrace (−0.036) and Duroc (−0.057) pigs. The heritability of BtW, AGE and BF of Landrace pigs and Duroc pigs were 0.148, 0.182 and 0.075 and 0.168, 0.159 and 0.120, respectively, by taking into account of the litter effect. BtW was genetically correlated with AGE and BF in Landrace (−0.094, 0.002) and Duroc (−0.199, −0.052). AGE was negatively genetically correlated with BF in both Landrace (−0.034) and Duroc (−0.153) pigs. The variances between total individual BtW and AGE and BF were then used to predict the EBV of AGE and BF for individuals with AGE or BF phenotypes missing under 10-fold cross−validation. Prediction accuracy was calculated as the Kendall tau-b correlation coefficient between EBVs and EBVs via 10-fold cross-validation. Prediction accuracy for AGE and BF was 0.655 and 0.611 in Landrace, 0.665 and 0.617 in Duroc. After incorporation of the litter effect, the prediction accuracy for AGE and BF increased to 0.690 and 0.665 in Landrace and to 0.705 and 0.649 in Duroc. So, the EBV of AGE and BF phenotypes missing individuals could be predicted by using the available phenotypic data and the easily measured BtW, and litter effect could boost the accuracy of prediction.

分析仔猪早期可检测表型与猪最终生产性能之间的相关性,有助于早期育种选育。本研究的目的是估算出生体重(BtW)、年龄(AGE)和背膘厚(BF)的遗传参数(最大体重 115 千克),并分析这三个性状之间的关系,同时估算使用 BtW 预测兰德马克猪和杜洛克猪 AGE 和 BF 估计育种值(EBV)的准确性。研究人员从某农场的核心育种群中收集了 2001 年至 2018 年间出生的 26 614 头兰系猪和 19 984 头杜洛克猪的数据。所有猪只的表型均有记录,包括BtW、AGE和BF。使用 R v4.2.0 软件分析了影响这三个性状的因素。使用基于 DMU 软件 AI 板块的多性状动物模型估算了三个性状的群体遗传参数和育种值。BtW、AGE和BF的遗传力在陆地牛(分别为0.437、0.282和0.137)和杜洛克牛(分别为0.369、0.279和0.148)中处于中等至高水平。BtW与AGE和BF的遗传相关性分别为:Landrace(-0.213,0.037)和Duroc(-0.214,0.025)。在兰德猪(-0.036)和杜洛克猪(-0.057)中,AGE 与 BF 呈负遗传相关。考虑到窝产效应,兰德马克猪和杜洛克猪的BtW、AGE和BF的遗传率分别为0.148、0.182和0.075,以及0.168、0.159和0.120。BtW与AGE和BF的遗传相关性分别为:Landrace(-0.094,0.002)和Duroc(-0.199,-0.052)。在兰德猪(-0.034)和杜洛克猪(-0.153)中,AGE 与 BF 呈负遗传相关。然后利用个体总 BtW 与 AGE 和 BF 之间的方差,在 10 倍交叉验证下预测 AGE 或 BF 表型缺失个体的 AGE 和 BF 的 EBV。通过 10 倍交叉验证,以 EBV 与 EBV 之间的 Kendall tau-b 相关系数计算预测准确率。兰德瑞斯的 AGE 和 BF 预测准确率分别为 0.655 和 0.611,杜洛克为 0.665 和 0.617。加入产仔数效应后,AGE 和 BF 的预测准确率在兰德瑞克分别提高到 0.690 和 0.665,在杜洛克分别提高到 0.705 和 0.649。因此,利用现有的表型数据和易于测量的 BtW 可以预测 AGE 和 BF 表型缺失个体的 EBV,而同窝效应可以提高预测的准确性。
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引用次数: 0
Imputation of single nucleotide polymorphism genotypes in ungenotyped sport horses from the genotypes of their progeny 根据运动马后代的基因型推算未获基因分型的运动马的单核苷酸多态性基因型
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101278

Many sport horse studbooks worldwide use microsatellite markers for parentage verification. However, many have expressed a desire to introduce genomic selection using genome-wide dense single nucleotide polymorphism (SNP) genotypes to complement their current breeding programmes. Hence, it does not make sense to genotype the same animal for both microsatellite markers and SNP markers. Transitioning to SNP-based parentage verification is an obvious solution but one barrier to this transition is the lack of SNP data on parents from which to verify parentage against. Therefore, the objective of this study was to assess the ability to impute the SNP genotype of a stallion from the genotypes of its progeny, with or without the consideration of the genotype of the progeny’s dam. Genotype information from 55 935 SNPs was available on 13 327 horses. A total of 98 stallions had genotype data on 10 progeny and the genotypes of these stallions were used as a test population. Genome-wide genotype imputation was undertaken by combining a family- and population-based imputation approach. Several different scenarios were assessed to quantify the ability to accurately impute the genotype of a stallion based on genotype data of incrementally more half-sibling progeny. Using genomic information from four progeny the average genotype concordance of the imputed sire genotype compared to the actual sire’s genotype was 0.932. The average genotype concordance rate increased to 0.960 when the genotypes of 10 progeny were included in the imputation process. The inclusion of the genotypes of the dams of the progeny improved the concordance rate from 0.932 to 0.977 when based on the genotype of just four progeny and their dams and from 0.960 to 0.996 when based on the genotype of 10 progeny and their dams. These results suggest it is possible to impute the genotype of a non-genotyped horse from the genotypes of its progeny and that the inclusion of the genotypes of the dams of the progeny improves this imputation accuracy further.

世界上许多运动马种公马都使用微卫星标记进行亲子鉴定。然而,许多人表示希望利用全基因组高密度单核苷酸多态性(SNP)基因型进行基因组选择,以补充当前的育种计划。因此,对同一动物同时进行微卫星标记和 SNP 标记的基因分型是不合理的。过渡到基于 SNP 的亲子鉴定是一个显而易见的解决方案,但这一过渡的一个障碍是缺乏亲本的 SNP 数据,无法据此进行亲子鉴定。因此,本研究的目的是评估根据公马后代的基因型推算公马 SNP 基因型的能力,无论是否考虑后代母马的基因型。从 13 327 匹马的 55 935 个 SNPs 中获得了基因型信息。共有 98 匹种马拥有 10 个后代的基因型数据,这些种马的基因型被用作测试群体。全基因组基因型估算是通过结合基于家系和群体的估算方法进行的。对几种不同的情况进行了评估,以量化根据逐渐增多的同父异母后代的基因型数据准确推算种马基因型的能力。利用四个后代的基因组信息,推算出的种公马基因型与实际种公马基因型的平均基因型一致性为 0.932。如果将 10 个后代的基因型纳入估算过程,平均基因型吻合率将提高到 0.960。如果只根据 4 个后代及其母本的基因型进行推算,加入后代母本的基因型可使一致性从 0.932 提高到 0.977;如果根据 10 个后代及其母本的基因型进行推算,一致性从 0.960 提高到 0.996。这些结果表明,从一匹未进行基因分型的马的后代基因型中推算出该马的基因型是可能的,而将后代母马的基因型包括在内可进一步提高推算的准确性。
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引用次数: 0
Whole genome sequencing reveals that five genes are related to BW trait in sheep 全基因组测序发现五个基因与绵羊的体重特征有关
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101282

BW is an important economic trait in sheep that influences growth and development. Currently, most studies have used a single approach to screen genes associated with BW traits in sheep. To address this limitation, we conducted a genome-wide association study (GWAS) covering four different BW periods: birth, weaning, 6 months, and 12 months. Five new candidate genes: MAP3K1, ANKRD55, ABCB1, MEF2C and TRNAW-CCA-87 were screened using a combination of GWAS and quantitative trait loci analysis in sheep. Additionally, five genes were subjected to Gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses. These genes were primarily enriched in pathways related to growth hormone and energy metabolism. The results demonstrated that the above genes potentially influenced the growth and development of sheep. The five new candidate genes are closely related to the BW trait in sheep, which will be valuable for understanding the genetic mechanisms underlying BW traits and for guiding sheep breeding.

体重是影响绵羊生长发育的重要经济性状。目前,大多数研究都采用单一方法筛选与绵羊体重性状相关的基因。为了解决这一局限性,我们进行了一项全基因组关联研究(GWAS),涵盖了四个不同的体重期:出生、断奶、6 个月和 12 个月。五个新的候选基因我们结合绵羊的 GWAS 和数量性状位点分析,筛选出了五个新的候选基因:MAP3K1、ANKRD55、ABCB1、MEF2C 和 TRNAW-CCA-87。此外,还对五个基因进行了基因本体和京都基因和基因组百科全书通路富集分析。这些基因主要富集在与生长激素和能量代谢相关的通路中。结果表明,上述基因对绵羊的生长发育有潜在影响。这五个新的候选基因与绵羊的体重性状密切相关,对了解绵羊体重性状的遗传机制和指导绵羊育种具有重要价值。
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引用次数: 0
Feed characteristics and potential effects on ruminal bacteria of ensiled sugar kelp and winged kelp for Holstein dairy cows 饲喂荷斯坦奶牛的糖渍海带和带翅海带的饲料特性及其对瘤胃细菌的潜在影响
IF 4 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-09-01 DOI: 10.1016/j.animal.2024.101274

Seaweed silage has potential as an alternative feed ingredient for dairy cows. This study aims to investigate seaweed’s and seaweed silageś nutrient digestibility as well as their impact on the ruminal bacterial composition. The cultivated S. latissima and A. esculenta were preserved by freezing at − 40 °C or ensiling (16 °C, 3 months) with four different treatments: no additives, 4 g formic acid/kg wet seaweed, lactic acid bacteria (LAB) inoculant, and LAB inoculant in prewilted biomass (ca. 300 g DM/kg wet biomass). The nutrient digestibility was estimated using standard feed evaluation methods. The bacterial composition in ruminal fluid after 48 h in vitro anaerobic incubation with seaweeds and common feedstuffs was analysed using 16S ribosomal RNA (rRNA) amplicon sequencing (V3-V4) and quantitative PCR (qPCR). The results suggest that S. latissima was more digestible than A. esculenta and that the preservation treatments had only a small effect on the nutrient digestibility and ruminal bacteria compositions. The rumen DM degradability of S. latissima was comparable to common perennial and corn forage; however, the total tract CP digestibility of S. latissima (460 g/kg CP) was lower than common forages (620 – 820 g/kg CP) and was not improved by ensiling. There was a lack of insoluble but rumen−degradable CP in A. esculenta, making it unsuitable as a nutrient ingredient for dairy cows. The ruminal bacterial composition changed depending on the seaweed species used as substrate: The dominant bacterial taxa when incubated with S. latissima belonged to the genus Prevotella (relative abundance: 79 – 93%), known for its ability to degrade polysaccharides in various ecosystems. Moreover, the fibrolytic bacteria including Fibrobacter succinogenes and Ruminococcus flavefaciens were > 2.5 Log2FoldChange higher when incubating with S. latissima than with A. esculenta. These bacterial taxa may play an important role in the in vitro organic matter digestibility, noted as 2 times higher in S. latissima compared to A. esculenta. The qPCR results indicated potential methane mitigation properties of the studied seaweed species, with significantly lower gene copies of Archaea 16S rRNA and methyl coenzyme-M reductase subunit A genes when the ruminal fluid was incubated with the seaweed substrates. Our study suggested that ensiled S. latissima biomass can be included in the diet of dairy cows as an alternative forage-like ingredient with the potential of methane mitigation.

海藻青贮具有作为奶牛替代饲料原料的潜力。本研究旨在调查海藻和海藻青贮饲料的营养消化率及其对瘤胃细菌组成的影响。将栽培的 S. latissima 和 A. esculenta 海藻在 - 40 °C 下冷冻保存,或用四种不同的处理方法进行青贮(16 °C,3 个月):无添加剂、4 克甲酸/千克湿海藻、乳酸菌(LAB)接种剂和预晾干生物质(约 300 克 DM/千克湿生物质)中的乳酸菌接种剂。养分消化率采用标准饲料评估方法进行估算。使用 16S 核糖体 RNA(rRNA)扩增片段测序(V3-V4)和定量 PCR(qPCR)分析了海藻和普通饲料体外厌氧培养 48 小时后瘤胃液中的细菌组成。结果表明,S. latissima 的消化率比 A. esculenta 高,保存处理对营养物质消化率和瘤胃细菌组成的影响很小。S. latissima的瘤胃DM降解性与常见的多年生牧草和玉米牧草相当;但是,S. latissima的总道CP消化率(460克/千克CP)低于常见牧草(620 - 820克/千克CP),而且没有通过贮藏得到改善。A. esculenta 中缺乏不溶性但可被瘤胃降解的 CP,因此不适合作为奶牛的营养成分。瘤胃细菌组成随用作基质的海藻种类而变化:与 S. latissima 一起培养时,最主要的细菌类群属于 Prevotella 属(相对丰度:79 - 93%),该属因其在各种生态系统中降解多糖的能力而闻名。此外,与 S. latissima 一起培养时,纤维分解细菌(包括琥珀酸纤维杆菌和 Ruminococcus flavefaciens)的数量比与 A. esculenta 一起培养时高 2.5 Log2FoldChange。这些细菌类群可能在体外有机物消化率中发挥了重要作用,S. latissima 的体外有机物消化率比 A. esculenta 高 2 倍。qPCR 结果表明,当瘤胃液与海藻底物一起培养时,古细菌 16S rRNA 基因拷贝数和甲基辅酶-M 还原酶亚基 A 基因拷贝数显著降低,这表明所研究的海藻物种具有潜在的甲烷减排特性。我们的研究表明,经腌制的 S. latissima 生物质可作为替代性饲料成分添加到奶牛的日粮中,具有缓解甲烷排放的潜力。
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